Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADAT	51166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170991792	170991792	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AADAT	NM_182662	exon7	c.A666G	p.K222K	.	.	157	69	173	0	.	90
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1051046	1051046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ABCA7	NM_019112	exon19	c.T2679A	p.F893L	.	.	24	14	47	0	.	98
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	146032129	146032129	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ABCE1	NM_002940	exon8	c.623delA	p.H208fs	.	.	122	47	115	0	.	91
ACACA	31	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35545226	35545226	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACACA	NM_198834	exon39	c.G4767A	p.R1589R	.	.	105	43	153	1	.	154
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7254302	7254302	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACAP1	NM_014716	exon21	c.G2106A	p.A702A	.	.	30	20	53	0	.	153
ACIN1	22985	bcgsc.ca	37	14	23549896	23549896	+	Silent	SNP	C	C	T	rs141522105	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACIN1	NM_001164814	exon6	c.G822A	p.E274E	.	.	110	7	166	2	C|1.000;T|0.000	156
ACSM2A	123876	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20476838	20476838	+	Splice_Site	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACSM2A	NM_001010845	exon4	c.178-1G>A	.	.	.	202	73	190	2	.	91
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	148674983	148674983	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACVR2A	NM_001616	exon6	c.A804G	p.A268A	.	.	110	29	127	0	.	831
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123302161	123302161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ADAD1	NM_139243	exon4	c.C187A	p.P63T	.	.	357	96	289	0	.	90
AGAP1	116987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237032735	237032735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AGAP1	NM_001037131	exon18	c.A2543G	p.N848S	.	.	124	26	80	0	.	93
AGO4	192670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36292423	36292423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_017629	exon7	c.G835T	p.A279S	.	.	47	25	59	0	.	.
ANK1	286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	41574509	41574514	+	In_Frame_Del	DEL	AATATT	AATATT	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AATATT	AATATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANK1	NM_001142446	exon13	c.1460_1465del	p.487_489del	.	.	225	49	240	0	.	716
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92015870	92015870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKIB1	NM_019004	exon12	c.T1665G	p.H555Q	.	.	278	51	196	0	.	432
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99640465	99640465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_152788	exon13	c.C1934G	p.P645R	.	.	180	73	206	0	.	.
ANKS6	203286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	101498813	101498813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKS6	NM_173551	exon15	c.C2604G	p.S868R	.	.	38	13	38	0	.	92
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40892391	40892391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APBB2	NM_004307	exon12	c.G1519A	p.D507N	.	.	57	24	64	0	.	92
APC2	10297	hgsc.bcm.edu;broad.mit.edu	37	19	1468353	1468354	+	Nonsense_Mutation	INS	-	-	AGT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APC2	NM_005883	exon15	c.5053_5054insAGT	p.E1685delinsEX	.	.	36	25	50	0	.	290
APEX1	328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20925548	20925548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APEX1	NM_080648	exon5	c.T838A	p.W280R	.	.	156	52	175	0	.	661
ARID3B	10620	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74836589	74836589	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ARID3B	NM_006465	exon2	c.T312C	p.D104D	.	.	144	27	187	0	.	90
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177030375	177030375	+	Missense_Mutation	SNP	G	G	T	rs138326291	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ASTN1	NM_004319	exon2	c.C310A	p.P104T	.	.	63	50	79	0	G|1.000;C|0.000	319
ATP8A2	51761	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	26043153	26043153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ATP8A2	NM_016529	exon2	c.G115T	p.D39Y	.	.	66	20	51	1	.	138
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu	37	20	50292712	50292712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ATP9A	NM_006045	exon10	c.G835C	p.E279Q	.	.	132	7	105	0	.	94
AVL9	23080	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	32623585	32623585	+	RNA	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AVL9	.	.	.	.	.	.	145	60	180	0	.	90
B3GAT1	27087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134252717	134252717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	B3GAT1	NM_054025	exon4	c.A805C	p.S269R	.	.	76	34	76	0	.	91
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	99640967	99640967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BCL11B	NM_138576	exon4	c.C2206A	p.P736T	.	.	33	14	14	0	.	1147
BNIP3	664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	133787338	133787338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BNIP3	NM_004052	exon2	c.T156A	p.H52Q	.	.	40	9	61	0	.	227
BSN	8927	hgsc.bcm.edu;broad.mit.edu	37	3	49690047	49690048	+	In_Frame_Ins	INS	-	-	AGCAGC	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BSN	NM_003458	exon5	c.3058_3059insAGCAGC	p.K1020delinsKQQ	.	.	46	17	44	0	.	97
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29297116	29297116	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	C2orf71	NM_001029883	exon1	c.A12G	p.T4T	.	.	47	17	52	0	.	91
C3	718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6678293	6678293	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	C3	NM_000064	exon40	c.4720delG	p.D1574fs	.	.	51	29	94	0	.	95
CAST	831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96083056	96083056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CAST	NM_001042440	exon16	c.A1169G	p.D390G	.	.	279	77	319	0	.	517
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76889445	76889445	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CCDC146	NM_020879	exon8	c.A878T	p.E293V	.	.	178	31	146	0	.	70
CCDC33	80125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74560789	74560789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	CCDC33,NS,carcinoma,+1	CCDC33	NM_025055	exon5	c.T536C	p.M179T	.	.	25	6	32	0	.	95
CCZ1	51622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5944735	5944735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CCZ1	NM_015622	exon7	c.C533T	p.T178M	.	.	638	208	737	0	.	44
CEACAM3	1084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42301829	42301829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CEACAM3	NM_001815	exon2	c.A373T	p.I125L	.	.	63	38	99	0	.	91
CELA2A	63036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15788106	15788106	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CELA2A	NM_033440	exon3	c.G180T	p.G60G	.	.	122	39	142	0	.	92
CFTR	1080	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117234997	117234997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CFTR	NM_000492	exon15	c.A2504T	p.D835V	.	.	494	73	214	3	.	518
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11056338	11056338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CLEC16A	NM_015226	exon3	c.T236G	p.V79G	.	.	94	38	99	0	.	92
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99013614	99013614	+	Missense_Mutation	SNP	C	C	A	rs183838250		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CNGA3	NM_001298	exon8	c.C1981A	p.R661S	.	.	49	20	48	0	C|0.999;A|0.000	96
CNGA4	1262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6261787	6261787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CNGA4	NM_001037329	exon4	c.G763A	p.V255I	.	.	76	24	60	0	.	91
COL22A1	169044	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139620230	139620230	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	COL22A1	NM_152888	exon57	c.C3981A	p.G1327G	.	.	68	29	54	1	.	103
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37334154	37334154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CSF2RB	NM_000395	exon14	c.G2304T	p.E768D	.	.	36	16	33	0	.	93
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37679220	37679220	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CSNK1A1L	NM_145203	exon1	c.G174C	p.L58L	.	.	48	18	54	0	.	396
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99434099	99434099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYP3A43	NM_057096	exon2	c.T95G	p.L32R	.	.	262	124	151	0	.	92
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	99447235	99447235	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYP3A43	NM_057096	exon7	c.C588T	p.L196L	.	.	246	145	173	0	.	92
CYTIP	9595	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	158283867	158283867	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYTIP	NM_004288	exon6	c.542delT	p.L181X	.	.	97	38	91	0	.	93
DAGLB	221955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6474591	6474591	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DAGLB	NM_139179	exon4	c.G480A	p.G160G	.	.	72	28	61	0	.	70
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176893949	176893949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DBN1	NM_080881	exon8	c.C676T	p.R226C	.	.	31	14	39	0	.	587
DCD	117159	broad.mit.edu;bcgsc.ca	37	12	55039042	55039042	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DCD	NM_053283	exon4	c.A204G	p.K68K	.	.	188	6	217	0	.	91
DEF6	50619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35285774	35285774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DEF6	NM_022047	exon6	c.C914T	p.A305V	.	.	56	20	72	0	.	227
DEFB114	245928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49928115	49928115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DEFB114	NM_001037499	exon2	c.G100C	p.G34R	.	.	121	54	126	0	.	91
DLGAP1	9229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3879551	3879551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DLGAP1	NM_001242761	exon4	c.C518T	p.A173V	.	.	31	11	26	0	.	229
DMBT1	1755	broad.mit.edu	37	10	124361447	124361447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DMBT1	NM_007329	exon29	c.T3478C	p.C1160R	.	.	22	7	33	0	.	494
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76490821	76490821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DNAH17	NM_173628	exon40	c.G6124C	p.A2042P	.	.	33	15	32	0	.	142
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	196771386	196771387	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DNAH7	NM_018897	exon27	c.4332_4333insT	p.L1444fs	.	.	302	106	326	0	.	102
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169111319	169111319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DOCK2	NM_004946	exon8	c.G726C	p.M242I	.	.	147	44	96	0	.	97
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096118	167096118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DUSP27	NM_001080426	exon5	c.G1750A	p.V584I	.	.	46	31	37	0	.	71
EDNRB	1910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	78477336	78477336	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EDNRB	NM_001201397	exon4	c.G1026C	p.L342L	.	.	87	26	130	0	.	522
EFR3B	22979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	25351059	25351060	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_014971	exon6	c.493_494insG	p.M165fs	.	.	63	20	64	0	.	.
EIF4E1B	253314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070686	176070686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001099408	exon5	c.G247T	p.D83Y	.	.	90	25	75	0	.	.
EMP1	2012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	13366481	13366481	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EMP1	NM_001423	exon3	c.C147A	p.C49X	.	.	254	69	294	0	.	90
EP400	57634	bcgsc.ca	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EP400	NM_015409	exon47	c.G8175A	p.Q2725Q	.	.	27	4	33	0	.	520
EP400	57634	broad.mit.edu	37	12	132547138	132547138	+	Silent	SNP	A	A	G	rs111782215	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EP400	NM_015409	exon47	c.A8226G	p.Q2742Q	.	.	35	4	63	1	A|0.995;G|0.005	520
ERC1	23085	broad.mit.edu	37	12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	.	.	339	5	386	1	.	660
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128038082	128038082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERCC3	NM_000122	exon9	c.G1468T	p.E490X	.	.	114	40	107	0	.	723
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23703609	23703609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERN2	NM_033266	exon18	c.A2288G	p.Y763C	.	.	21	8	21	0	.	322
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74014610	74014611	+	Frame_Shift_Ins	INS	-	-	CCCT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EVPL	NM_001988	exon12	c.1356_1357insAGGG	p.G452fs	.	.	124	26	77	0	.	93
EXT1	2131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118817113	118817113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EXT1	NM_000127	exon10	c.T1903G	p.S635A	.	.	177	74	101	0	.	660
F2RL3	9002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	17001135	17001135	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	F2RL3	NM_003950	exon2	c.G861T	p.V287V	.	.	36	19	18	0	.	226
FAM182A	284800	broad.mit.edu	37	20	26061803	26061803	+	RNA	SNP	C	C	A	rs78281752	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	.	.	.	43	8	37	1	C|0.649;A|0.351	.
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	.	.	.	46	4	45	0	G|0.994;C|0.006	.
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149528	34149528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FAM47A	NM_203408	exon1	c.C868G	p.P290A	.	.	71	56	70	0	.	134
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126367528	126367528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FAT4	NM_024582	exon8	c.G7274A	p.R2425K	.	.	69	30	92	0	.	108
FBXL5	26234	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15613952	15613952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FBXL5	NM_012161	exon10	c.G1936T	p.D646Y	.	.	204	88	230	1	.	226
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123274695	123274695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FGFR2	NM_022970	exon9	c.A1226G	p.D409G	.	.	158	31	172	0	.	2607
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131007517	131007517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FNIP1	NM_133372	exon14	c.T2620A	p.C874S	.	.	135	58	110	0	.	92
FTMT	94033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121188325	121188325	+	Missense_Mutation	SNP	G	G	A	rs149286328	byfrequency;alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FTMT	NM_177478	exon1	c.G667A	p.A223T	.	.	76	24	57	0	G|0.999;T|0.001	91
GAS7	8522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9846500	9846500	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GAS7	NM_201433	exon7	c.G669T	p.L223L	.	.	36	24	84	0	.	1083
GGT8P	645367	ucsc.edu	37	2	91969196	91969196	+	RNA	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	.	.	.	165	59	181	2	.	.
GIMAP4	55303	hgsc.bcm.edu;bcgsc.ca	37	7	150269571	150269571	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GIMAP4	NM_018326	exon3	c.T413A	p.L138Q	.	.	66	18	91	0	.	91
GPR114	221188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	57604440	57604440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GPR114	NM_153837	exon10	c.A1201T	p.M401L	.	.	20	8	18	0	.	90
GPR124	25960	broad.mit.edu	37	8	37692843	37692843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GPR124	NM_032777	exon12	c.C1760A	p.P587Q	.	.	32	4	32	0	.	157
GPR15	2838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98251158	98251158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GPR15	NM_005290	exon1	c.C281A	p.A94E	.	.	85	32	115	0	.	91
GSE1	23199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	85696964	85696964	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_014615	exon11	c.G2388A	p.L796L	.	.	20	9	20	0	.	.
GTPBP1	9567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39125539	39125539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GTPBP1	NM_004286	exon11	c.G1789T	p.G597C	.	.	70	18	76	0	.	91
GUCY1A2	2977	hgsc.bcm.edu	37	11	106888608	106888608	+	Silent	SNP	G	G	A	rs3107973		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GUCY1A2	NM_000855	exon1	c.C174T	p.A58A	.	.	11	7	2	0	G|0.762;A|0.238	589
HAP1	9001	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39881005	39881005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HAP1	NM_177977	exon11	c.A1808C	p.H603P	.	.	17	5	36	1	.	92
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240056268	240056268	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HDAC4	NM_006037	exon10	c.C1050T	p.S350S	.	.	71	16	52	0	.	291
HLA-DMA	3108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32918508	32918508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HLA-DMA	NM_006120	exon2	c.G161A	p.S54N	.	.	46	13	45	0	.	90
HPDL	84842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45793225	45793225	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HPDL	NM_032756	exon1	c.C405T	p.R135R	.	.	104	40	80	0	.	90
HPR	3250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72108240	72108240	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HPR	NM_020995	exon3	c.149delG	p.R50fs	.	.	347	106	355	0	.	515
ICAM5	7087	broad.mit.edu	37	19	10406059	10406059	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ICAM5	NM_003259	exon10	c.T2268C	p.P756P	.	.	49	8	61	6	.	153
IL12B	3593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	158753702	158753702	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IL12B	NM_002187	exon3	c.88+1G>A	.	.	.	111	31	69	1	.	90
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	3596419	3596419	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IRX1	NM_024337	exon1	c.200delC	p.A67fs	.	.	38	13	28	0	.	228
ISM1	140862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13269286	13269286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ISM1	NM_080826	exon4	c.G743A	p.C248Y	.	.	67	28	49	1	.	68
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15688879	15688879	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ITGA8	NM_003638	exon12	c.A1173C	p.A391A	.	.	79	26	80	0	.	230
ITIH2	3698	hgsc.bcm.edu	37	10	7786905	7786905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ITIH2	NM_002216	exon19	c.C2560T	p.P854S	.	.	146	13	98	0	.	93
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59961929	59961929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	JKAMP	NM_016475	exon4	c.G445T	p.A149S	.	.	190	69	211	0	.	67
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10610444	10610444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KEAP1	NM_012289	exon2	c.C266T	p.P89L	.	.	38	30	54	0	.	637
KIAA1024	23251	bcgsc.ca	37	15	79750294	79750294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIAA1024	NM_015206	exon2	c.G1805T	p.R602M	.	.	56	4	86	0	.	183
KIAA1211L	343990	hgsc.bcm.edu;broad.mit.edu	37	2	99439712	99439712	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_207362	exon7	c.1024delG	p.A342fs	.	.	19	11	12	0	.	.
KIAA1407	57577	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113724658	113724658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIAA1407	NM_020817	exon10	c.C1565T	p.T522I	.	.	198	69	210	2	.	92
KIAA1609	57707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84514214	84514214	+	Missense_Mutation	SNP	G	G	A	rs149378530	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIAA1609	NM_020947	exon7	c.C1178T	p.P393L	.	.	91	43	88	0	G|1.000;T|0.000	92
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10408742	10408742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIF1B	NM_015074	exon35	c.T3762A	p.H1254Q	.	.	79	25	78	0	.	93
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245530263	245530263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIF26B	NM_018012	exon3	c.C593A	p.A198D	.	.	67	29	69	0	.	25
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	39723992	39723992	+	Nonsense_Mutation	SNP	C	C	A	rs201817471	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KRT9	NM_000226	exon7	c.G1405T	p.G469X	.	.	29	17	32	0	C|0.999;G|0.000	92
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21523852	21523852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LAMA3	NM_198129	exon69	c.C9127A	p.R3043S	.	.	74	31	85	0	.	100
LATS1	9113	hgsc.bcm.edu	37	6	150004716	150004717	+	Nonsense_Mutation	INS	-	-	ACACGCATACTTTTCACAGGCTGTTGAATAGG	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LATS1	NM_004690	exon4	c.1509_1510insCCTATTCAACAGCCTGTGAAAAGTATGCGTGT	p.V503_L504delinsVLFNSLX	.	.	59	0	127	0	.	992
LENG8	114823	broad.mit.edu	37	19	54967251	54967251	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LENG8	NM_052925	exon9	c.T1131G	p.G377G	.	.	124	18	84	9	.	91
LHX1	3975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35298050	35298050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LHX1	NM_005568	exon3	c.C541T	p.R181W	.	.	39	14	28	0	.	92
LMBR1	64327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156619307	156619308	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LMBR1	NM_022458	exon4	c.311_312insC	p.L104fs	.	.	41	29	60	0	.	90
LOC442028	0	broad.mit.edu;bcgsc.ca	37	2	95552701	95552701	+	RNA	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	.	.	.	46	21	54	0	.	.
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40360374	40360374	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRFN2	NM_020737	exon3	c.T1678A	p.C560S	.	.	51	21	52	0	.	93
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44162019	44162019	+	Splice_Site	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRPPRC	NM_133259	exon25	c.2505-2A>T	.	.	.	108	43	144	0	.	93
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51021453	51021453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRRC4B	NM_001080457	exon3	c.C1517T	p.P506L	.	.	15	14	15	0	.	205
MAP3K19	80122	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135744289	135744289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_025052	exon7	c.A2153G	p.Q718R	.	.	303	119	312	2	.	.
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3783884	3783884	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MATK	NM_002378	exon6	c.C513T	p.R171R	.	.	59	39	80	0	.	521
MATN3	4148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20202976	20202976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_002381	exon3	c.C862T	p.H288Y	.	.	89	39	68	0	.	.
MDM1	56890	broad.mit.edu;bcgsc.ca	37	12	68707452	68707452	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MDM1	NM_017440	exon10	c.T1581C	p.T527T	.	.	154	5	154	0	.	95
METTL21B	25895	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58166537	58166537	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	METTL21B	NM_015433	exon1	c.T30A	p.S10S	.	.	73	26	52	0	.	514
MFSD1	64747	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	158519925	158519925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MFSD1	NM_022736	exon1	c.C131G	p.P44R	.	.	74	25	59	0	.	90
MKRN9P	400058	bcgsc.ca	37	12	88177142	88177142	+	RNA	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	.	.	.	33	8	29	0	.	.
MLL3	58508	hgsc.bcm.edu;broad.mit.edu	37	7	151927092	151927092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MLL3	NM_170606	exon18	c.2892delC	p.G964fs	.	.	575	44	738	0	.	1398
MMACHC	25974	broad.mit.edu;ucsc.edu	37	1	45966041	45966041	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MMACHC	NM_015506	exon1	c.G37T	p.E13X	.	.	120	49	123	1	.	90
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158817562	158817562	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MNDA	NM_002432	exon6	c.T1032C	p.N344N	.	.	42	36	58	0	.	94
MS4A2	2206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59861474	59861474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MS4A2	NM_000139	exon6	c.G575T	p.G192V	.	.	89	38	113	0	.	91
MUC17	140453	bcgsc.ca	37	7	100683020	100683020	+	Missense_Mutation	SNP	G	G	C	rs150509322	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.G8323C	p.A2775P	.	.	72	6	55	2	G|1.000;C|0.000	95
MUC17	140453	bcgsc.ca	37	7	100683036	100683036	+	Missense_Mutation	SNP	T	T	C	rs78879527	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.T8339C	p.I2780T	.	.	71	6	49	0	T|0.957;C|0.043	95
MUC17	140453	hgsc.bcm.edu;bcgsc.ca	37	7	100682890	100682890	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.T8193C	p.S2731S	.	.	75	5	58	0	.	95
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100682876	100682876	+	Missense_Mutation	SNP	G	G	A	rs143199514		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.G8179A	p.A2727T	.	.	78	9	55	0	G|1.000;A|0.000	95
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10411951	10411951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYH1	NM_005963	exon16	c.G1626A	p.M542I	.	.	46	33	81	0	.	171
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10307807	10307807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYH8	NM_002472	exon22	c.T2528A	p.L843H	.	.	257	169	411	1	.	101
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76925722	76925722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYO7A	NM_000260	exon49	c.G6629T	p.G2210V	.	.	60	26	66	0	.	138
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50071174	50071174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NFATC2	NM_012340	exon6	c.G1760A	p.S587N	.	.	120	71	74	0	.	92
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247588229	247588229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NLRP3	NM_183395	exon3	c.A1484G	p.Q495R	.	.	40	28	21	0	.	674
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103917282	103917282	+	Missense_Mutation	SNP	T	T	G	rs139625185	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NOLC1	NM_004741	exon4	c.T411G	p.D137E	.	.	50	21	54	0	T|0.999;G|0.001	91
NOP14-AS1	317648	ucsc.edu	37	4	2940347	2940347	+	RNA	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	.	.	.	19	1	16	0	.	.
NPR1	4881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153653014	153653014	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NPR1	NM_000906	exon2	c.C759T	p.T253T	.	.	97	82	88	0	.	393
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	106532406	106532406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NUAK1	NM_014840	exon1	c.C26A	p.A9E	.	.	25	17	23	0	.	359
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	106532400	106532400	+	Missense_Mutation	SNP	T	T	G	rs201298691	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NUAK1	NM_014840	exon1	c.A32C	p.D11A	.	.	24	15	26	0	.	359
OR14A16	284532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247978654	247978654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR14A16	NM_001001966	exon1	c.C378A	p.H126Q	.	.	60	46	88	0	.	46
OR2M1P	388762	ucsc.edu;bcgsc.ca	37	1	248285634	248285634	+	RNA	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR2M1P	.	.	.	.	.	.	125	96	179	1	.	46
OR2T8	343172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248085221	248085221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR2T8	NM_001005522	exon1	c.G902T	p.R301M	.	.	70	52	86	0	.	68
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20215690	20215690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR4Q3	NM_172194	exon1	c.A104C	p.Y35S	.	.	311	63	348	0	.	71
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20216358	20216358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR4Q3	NM_172194	exon1	c.A772T	p.I258F	.	.	164	19	189	0	.	71
OR51M1	390059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5410935	5410935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR51M1	NM_001004756	exon1	c.A307T	p.S103C	.	.	66	30	104	0	.	68
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55579638	55579638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5L1	NM_001004738	exon1	c.G696T	p.E232D	.	.	85	34	96	1	.	73
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56000068	56000068	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5T2	NM_001004746	exon1	c.T594C	p.H198H	.	.	133	58	139	0	.	70
OR5V1	81696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29323327	29323327	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5V1	NM_030876	exon1	c.C646G	p.L216V	.	.	34	10	38	0	.	72
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669510	158669510	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR6K2	NM_001005279	exon1	c.A933T	p.I311I	.	.	117	42	130	0	.	69
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669512	158669512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR6K2	NM_001005279	exon1	c.A931T	p.I311L	.	.	115	41	130	0	.	69
PALLD	23022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169825044	169825044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PALLD	NM_001166108	exon15	c.C2609A	p.A870D	.	.	81	38	88	0	.	94
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222105	140222105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCDHA8	NM_031856	exon1	c.C1199T	p.T400I	.	.	184	68	192	0	.	92
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140558291	140558291	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCDHB8	NM_019120	exon1	c.A676T	p.T226S	.	.	301	77	340	0	.	131
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82895887	82895887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCF11	NM_015885	exon16	c.C4619T	p.A1540V	.	.	70	24	65	0	.	23
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47856895	47856895	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCNT	NM_006031	exon40	c.A9000T	p.T3000T	.	.	25	11	39	0	.	141
PDCD11	22984	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105173039	105173039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDCD11	NM_014976	exon9	c.C1145A	p.A382D	.	.	118	33	118	1	.	275
PDCD1	5133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242793440	242793440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDCD1	NM_005018	exon5	c.C637T	p.P213S	.	.	44	20	46	0	.	69
PDGFRA	5156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55133851	55133851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDGFRA	NM_006206	exon7	c.C1064T	p.T355I	.	.	136	58	163	2	.	9497
PDXK	8566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45175644	45175644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDXK	NM_003681	exon10	c.A825T	p.K275N	.	.	14	8	24	0	.	205
PGC	5225	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	41712472	41712472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PGC	NM_002630	exon2	c.C134T	p.T45I	.	.	50	14	58	1	.	90
PIGO	84720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35094331	35094331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PIGO	NM_001201484	exon4	c.T537G	p.D179E	.	.	43	23	42	0	.	290
PIGQ	9091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	625870	625870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PIGQ	NM_148920	exon3	c.G721A	p.G241R	.	.	18	14	33	0	.	226
PITPNM2	57605	hgsc.bcm.edu	37	12	123470586	123470586	+	Silent	SNP	C	C	T	rs12828755	bycluster;byfrequency;by1000genomes	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PITPNM2	NM_020845	exon25	c.G4038A	p.A1346A	.	.	6	5	4	0	C|0.870;G|0.000;T|0.130	228
PLOD3	8985	bcgsc.ca;mdanderson.org	37	7	100855190	100855190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PLOD3	NM_001084	exon11	c.G1169T	p.S390I	.	.	59	43	33	1	.	92
PMS2P5	5383	ucsc.edu	37	7	74306962	74306962	+	RNA	SNP	G	G	C	rs201591143	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PMS2P5	.	.	.	.	.	.	23	8	13	0	G|0.970;C|0.030	63
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118360697	118360697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PNLIPRP1	NM_006229	exon10	c.G1047T	p.E349D	.	.	57	22	55	0	.	154
PNPLA4	8228	broad.mit.edu	37	X	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	.	.	191	4	208	0	.	130
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127379537	127379537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PODXL2	NM_015720	exon3	c.T666A	p.H222Q	.	.	85	26	67	0	.	91
POF1B	79983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84561303	84561303	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	POF1B	NM_024921	exon12	c.T1201C	p.L401L	.	.	87	67	113	0	.	130
POTEG	404785	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	19553734	19553734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	POTEG	NM_001005356	exon1	c.C318A	p.F106L	.	.	487	78	531	1	.	1
PPIL2	23759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	22025285	22025298	+	Frame_Shift_Del	DEL	GTCTCTCTCTGCAG	GTCTCTCTCTGCAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GTCTCTCTCTGCAG	GTCTCTCTCTGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PPIL2	NM_014337	exon4	c.129_141del	p.43_47del	.	.	140	10	209	0	.	92
PPP4C	5531	broad.mit.edu	37	16	30095000	30095000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PPP4C	NM_002720	exon7	c.T502C	p.S168P	.	.	59	3	60	3	.	226
PRDM2	7799	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	14105627	14105627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRDM2	NM_015866	exon8	c.C1337T	p.S446L	.	.	93	8	102	1	.	116
PRDM9	56979	bcgsc.ca	37	5	23527637	23527637	+	Missense_Mutation	SNP	A	A	C	rs61051796		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRDM9	NM_020227	exon11	c.A2440C	p.S814R	.	.	79	13	104	2	A|0.999;C|0.001	139
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	45879477	45879477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRKCE	NM_005400	exon1	c.G238T	p.E80X	.	.	30	15	27	0	.	1019
PRPF31	26121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54626868	54626868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRPF31	NM_015629	exon6	c.T456A	p.N152K	.	.	81	44	74	0	.	91
PRPF39	55015	broad.mit.edu	37	14	45578856	45578856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRPF39	NM_017922	exon8	c.A1049G	p.K350R	.	.	106	4	96	0	.	70
PRR14L	253143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32112941	32112941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRR14L	NM_173566	exon4	c.G884A	p.G295E	.	.	181	39	201	0	.	91
PRSS57	400668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	687104	687104	+	Missense_Mutation	SNP	G	G	A	rs201377261		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRSS57	NM_214710	exon4	c.C466T	p.R156W	.	.	59	38	83	0	G|0.999;A|0.000	90
PTPRR	5801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71054875	71054875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PTPRR	NM_002849	exon12	c.A1611C	p.Q537H	.	.	62	20	84	0	.	652
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1537527	1537527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PTX4	NM_001013658	exon2	c.C571A	p.P191T	.	.	55	34	71	0	.	90
PYROXD1	79912	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21609022	21609022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PYROXD1	NM_024854	exon7	c.C743A	p.T248K	.	.	111	39	157	1	.	23
RAB19	401409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140111745	140111745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RAB19	NM_001008749	exon3	c.C273G	p.H91Q	.	.	46	21	39	0	.	22
RABL6	55684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139722950	139722951	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001173989	exon4	c.318_319insAG	p.K106fs	.	.	69	46	27	0	.	.
RAPGEF3	10411	hgsc.bcm.edu	37	12	48134734	48134734	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RAPGEF3	NM_001098531	exon20	c.G2013T	p.T671T	.	.	84	4	79	0	.	660
RASSF10	644943	hgsc.bcm.edu;bcgsc.ca	37	11	13031752	13031752	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001080521	exon1	c.629delG	p.C210fs	.	.	90	28	68	0	.	.
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167666934	167666934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RCSD1	NM_052862	exon6	c.G1073T	p.G358V	.	.	29	27	37	0	.	517
RGMB	285704	hgsc.bcm.edu;broad.mit.edu	37	5	98109681	98109682	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001012761	exon3	c.30_31insC	p.A10fs	.	.	28	14	9	0	.	.
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130929724	130929724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIMBP2	NM_015347	exon7	c.T621A	p.D207E	.	.	33	25	63	0	.	142
RIMBP3	85376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20458090	20458090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_015672	exon1	c.C3212A	p.T1071N	.	.	408	94	466	1	.	.
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24807239	24807239	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIPK3	NM_006871	exon6	c.C672A	p.T224T	.	.	80	36	77	0	.	946
RPS23	6228	broad.mit.edu	37	5	81571982	81571982	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RPS23	NM_001025	exon4	c.C378T	p.A126A	.	.	313	5	311	0	.	22
RTTN	25914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67802444	67802444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RTTN	NM_173630	exon22	c.A2861G	p.D954G	.	.	193	42	171	0	.	141
SAMD9L	219285	broad.mit.edu	37	7	92764827	92764827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SAMD9L	NM_152703	exon5	c.A458G	p.K153R	.	.	564	4	340	1	.	94
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83014738	83014738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SEMA3E	NM_012431	exon16	c.G1747T	p.D583Y	.	.	255	63	213	0	.	93
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48063978	48063978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SEMA6D	NM_153618	exon19	c.A3218G	p.Y1073C	.	.	86	26	67	1	.	138
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185318578	185318578	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SENP2	NM_021627	exon5	c.384delT	p.S128fs	.	.	155	56	137	0	.	658
SERINC4	619189	broad.mit.edu;bcgsc.ca	37	15	44087217	44087217	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SERINC4	NM_001258031	exon12	c.1538delA	p.N513fs	.	.	14	9	22	0	.	90
SHISA3	152573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42400220	42400220	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SHISA3	NM_001080505	exon1	c.C147T	p.D49D	.	.	75	21	53	0	.	70
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75705361	75705361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SIN3A	NM_001145358	exon5	c.C499T	p.R167C	.	.	123	41	108	0	.	230
SLC45A3	85414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205628667	205628667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC45A3	NM_033102	exon5	c.C1357A	p.L453M	.	.	76	60	73	0	.	98
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220500505	220500505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC4A3	NM_201574	exon14	c.C2164T	p.H722Y	.	.	66	31	63	0	.	157
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	335639	335639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A13	NM_016615	exon9	c.T977G	p.F326C	.	.	31	11	47	0	.	90
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1422073	1422073	+	Missense_Mutation	SNP	C	C	T	rs6345	bycluster;by1000genomes	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A3	NM_001044	exon5	c.G710A	p.R237Q	.	.	42	19	40	0	C|0.001;G|0.998	157
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1422086	1422086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A3	NM_001044	exon5	c.C697A	p.L233M	.	.	40	15	38	0	.	157
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu	37	2	103121886	103121912	+	In_Frame_Del	DEL	TCATCTGCTTCACCCTGGCCTTCTGCC	TCATCTGCTTCACCCTGGCCTTCTGCC	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TCATCTGCTTCACCCTGGCCTTCTGCC	TCATCTGCTTCACCCTGGCCTTCTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC9A4	NM_001011552	exon4	c.1154_1180del	p.385_394del	.	.	41	10	47	0	.	92
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164908256	164908256	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLITRK3	NM_014926	exon2	c.C363T	p.F121F	.	.	80	34	80	0	.	100
SORD	6652	broad.mit.edu	37	15	45365673	45365673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SORD	NM_003104	exon9	c.A1019G	p.K340R	.	.	871	7	784	0	.	90
SPATA20	64847	broad.mit.edu	37	17	48627459	48627459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPATA20	NM_022827	exon8	c.C976T	p.R326W	.	.	45	3	27	0	.	90
SPEG	10290	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220354472	220354472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon36	c.C8732A	p.P2911Q	.	.	89	38	117	1	.	383
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220326629	220326631	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon7	c.2466_2468del	p.822_823del	.	.	65	24	60	0	.	383
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	220348586	220348586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon30	c.G6401T	p.G2134V	.	.	11	5	13	0	.	383
SPIRE1	56907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12454401	12454401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPIRE1	NM_001128626	exon13	c.G1720A	p.E574K	.	.	174	63	183	0	.	90
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131369944	131369944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPTAN1	NM_003127	exon32	c.G4108T	p.D1370Y	.	.	56	15	98	0	.	158
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52553354	52553354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	STAB1	NM_015136	exon49	c.C5109A	p.F1703L	.	.	74	50	99	0	.	139
STAC3	246329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57640644	57640644	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	STAC3	NM_145064	exon6	c.C546T	p.R182R	.	.	125	40	122	0	.	93
SUPT20HL1	100130302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24383090	24383090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001136234	exon1	c.C2213A	p.A738D	.	.	124	96	113	0	.	.
SYT17	51760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19234475	19234475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SYT17	NM_016524	exon6	c.A1060T	p.S354C	.	.	89	33	91	0	.	69
TCTE1	202500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44254246	44254246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TCTE1	NM_182539	exon3	c.C301G	p.L101V	.	.	73	17	87	0	.	94
TDP1	55775	broad.mit.edu	37	14	90509453	90509453	+	Missense_Mutation	SNP	C	C	T	rs113382706		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TDP1	NM_018319	exon17	c.C1793T	p.P598L	.	.	68	3	67	0	.	92
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123540198	123540198	+	Silent	SNP	C	C	T	rs148101479		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001163278	exon26	c.G5124A	p.T1708T	.	.	76	59	83	0	C|1.000;T|0.000	.
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41658400	41658400	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TFEB	NM_007162	exon5	c.468+1G>A	.	.	.	19	8	27	0	.	659
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133935646	133935646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TG	NM_003235	exon22	c.C4592G	p.A1531G	.	.	101	51	65	0	.	145
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164394657	164394657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TKTL2	NM_032136	exon1	c.G230A	p.G77E	.	.	129	47	148	0	.	95
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76120809	76120809	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TMC6	NM_001127198	exon8	c.G687A	p.P229P	.	.	89	26	50	0	.	90
TNFRSF11B	4982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	119936632	119936632	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TNFRSF11B	NM_002546	exon5	c.T1187G	p.V396G	.	.	151	55	111	0	.	651
TNK2	10188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195610026	195610026	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TNK2	NM_005781	exon6	c.609+2T>A	.	.	.	12	6	23	0	.	957
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577064	7577064	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	TP53,NS,carcinoma,+1	TP53	NM_000546	exon8	c.A874T	p.K292X	.	.	35	17	60	0	.	70225
TRIM13	10206	hgsc.bcm.edu	37	13	50588496	50588497	+	RNA	INS	-	-	AC	rs10676627	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRIM13	.	.	.	.	.	.	37	18	52	0	.	228
TRIM39	56658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30298592	30298593	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRIM39	NM_172016	exon4	c.488_489del	p.163_163del	.	.	70	21	72	0	.	161
TRUB2	26995	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131072114	131072114	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRUB2	NM_015679	exon8	c.G711A	p.K237K	.	.	80	17	108	1	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179472259	179472259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TTN	NM_001267550	exon277	c.T53156A	p.V17719E	.	.	165	57	152	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179501228	179501228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TTN	NM_001267550	exon225	c.G41226T	p.K13742N	.	.	148	54	146	0	.	636
TUBB8	347688	broad.mit.edu;mdanderson.org	37	10	94664	94664	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TUBB8	NM_177987	exon3	c.T168A	p.G56G	.	.	38	8	34	1	.	69
TUBGCP6	85378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50656529	50656539	+	Frame_Shift_Del	DEL	TTCTCCGTGAG	TTCTCCGTGAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TTCTCCGTGAG	TTCTCCGTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TUBGCP6	NM_020461	exon24	c.5176_5186del	p.1726_1729del	.	.	34	12	37	0	.	93
UBD	10537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29524084	29524084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	UBD	NM_006398	exon2	c.C71G	p.A24G	.	.	69	23	86	0	.	90
UBE2O	63893	broad.mit.edu	37	17	74395640	74395640	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	UBE2O	NM_022066	exon9	c.C1518T	p.S506S	.	.	256	4	187	0	.	272
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17544442	17544442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	USH1C	NM_153676	exon12	c.G908T	p.R303L	.	.	69	28	61	0	.	91
VAC14	55697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70778459	70778459	+	Silent	SNP	C	C	A	rs145571853	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	VAC14	NM_018052	exon13	c.G1395T	p.V465V	.	.	64	16	54	0	C|1.000;T|0.000	227
VPREB3	29802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24096504	24096504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	VPREB3	NM_013378	exon1	c.C47T	p.S16L	.	.	74	24	100	0	.	90
WDR96	80217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105944803	105944803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	WDR96	NM_025145	exon16	c.T2112A	p.D704E	.	.	65	12	83	0	.	95
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32414292	32414292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	WT1	NM_024424	exon8	c.C1259G	p.P420R	.	.	81	28	90	0	.	6891
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39228092	39228092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP1	NM_001198621	exon2	c.C2845T	p.P949S	.	.	53	38	63	0	.	158
XIRP2	129446	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	168110643	168110643	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_001199143	exon10	c.C1377A	p.C459X	.	.	311	106	290	1	.	104
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	168102891	168102891	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_152381	exon9	c.4989delA	p.I1663fs	.	.	217	95	208	0	.	104
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	168105997	168105997	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_152381	exon9	c.8095delC	p.P2699fs	.	.	128	43	137	0	.	104
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56436755	56436757	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XKR4	NM_052898	exon3	c.1922_1924del	p.641_642del	.	.	41	11	33	0	.	92
ZBTB48	3104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6642352	6642352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZBTB48	NM_005341	exon3	c.C925T	p.H309Y	.	.	63	27	84	0	.	514
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	99999574	99999574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZCWPW1	NM_017984	exon17	c.C1562G	p.A521G	.	.	268	17	142	0	.	90
ZMYM1	79830	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35563033	35563033	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZMYM1	NM_024772	exon4	c.T285A	p.I95I	.	.	231	92	243	1	.	90
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20657109	20657109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZMYM2	NM_001190964	exon24	c.A3757G	p.T1253A	.	.	229	100	249	0	.	685
ZNF107	51427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	64166839	64166839	+	Nonsense_Mutation	SNP	G	G	T	rs201422104	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF107	NM_016220	exon7	c.G157T	p.E53X	.	.	208	67	176	0	.	69
ZNF250	58500	broad.mit.edu;bcgsc.ca	37	8	146108000	146108000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_021061	exon6	c.G583A	p.G195R	.	.	538	40	146	1	.	.
ZNF300P1	134466	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150322171	150322171	+	RNA	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	.	.	.	60	9	46	0	.	.
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52376841	52376841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF577	NM_032679	exon7	c.A402T	p.R134S	.	.	60	37	135	0	.	91
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52376925	52376925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF577	NM_032679	exon7	c.A318T	p.K106N	.	.	49	33	93	0	.	91
ZNF667	63934	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952664	56952664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF667	NM_022103	exon5	c.G1700T	p.G567V	.	.	128	72	108	1	.	91
ZNF670	93474	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247201663	247201663	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF670	NM_033213	exon4	c.G258A	p.Q86Q	.	.	69	61	73	1	.	91
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	375	129	254	3	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	313	77	214	2	.	.
ZNF862	643641	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149558298	149558298	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF862	NM_001099220	exon7	c.C2049A	p.I683I	.	.	74	19	77	1	.	69
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22574550	22574550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF98	NM_001098626	exon4	c.G1487C	p.G496A	.	.	330	85	257	0	.	24
MS4A2	2206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59861471	59861472	+	Missense_Mutation	DNP	TG	TG	AT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.L191H	.	.	.	.	.	.	.	
IRAK4	51135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	44165082	44165083	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.W74F	.	.	.	.	.	.	.	
LINGO2	158038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27949553	27949554	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.L373M	.	.	.	.	.	.	.	
