Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109637211	109637211	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ACACB	NM_001093	exon17	c.C2632A	p.R878R	.	.	80	42	115	0	.	98
ADD3	120	bcgsc.ca	37	10	111876151	111876151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ADD3	NM_001121	exon4	c.G469A	p.A157T	.	.	100	6	129	0	.	157
AGBL5	60509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27282078	27282078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	AGBL5	NM_021831	exon11	c.C1895A	p.S632Y	.	.	152	68	235	0	.	154
ALG9	79796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111724383	111724383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ALG9	NM_001077690	exon8	c.A778G	p.I260V	.	.	170	37	292	0	.	91
ANKRD30BL	554226	broad.mit.edu	37	2	132919225	132919225	+	RNA	SNP	C	C	T	rs9750450	bycluster;byfrequency;by1000genomes	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	.	.	.	.	.	.	.	102	5	169	1	C|0.962;T|0.038	.
ANO8	57719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17442017	17442017	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ANO8	NM_020959	exon7	c.C711A	p.I237I	.	.	43	22	59	0	.	93
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201527688	201527688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	AOX1	NM_001159	exon31	c.A3539G	p.H1180R	.	.	54	24	89	0	.	96
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21229749	21229749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	APOB	NM_000384	exon26	c.A9991G	p.I3331V	.	.	147	55	229	0	.	175
ASXL2	55252	bcgsc.ca	37	2	26022304	26022306	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ASXL2	NM_018263	exon4	c.351_353del	p.117_118del	.	.	35	4	112	0	.	23
ATP6V1B2	526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20068787	20068787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ATP6V1B2	NM_001693	exon6	c.A563C	p.K188T	.	.	55	25	86	0	.	90
ATP6V1F	9296	broad.mit.edu	37	7	128502973	128502973	+	Silent	SNP	T	T	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ATP6V1F	NM_001198909	exon1	c.T15G	p.G5G	.	.	67	14	68	13	.	91
BTNL2	56244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32370894	32370894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	BTNL2	NM_019602	exon3	c.A527G	p.Y176C	.	.	170	100	151	0	.	90
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162343882	162343882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	C1orf111	NM_182581	exon3	c.G742A	p.E248K	.	.	117	28	108	0	.	69
C3orf30	152405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	118865730	118865730	+	Missense_Mutation	SNP	G	G	A	rs148898242	byfrequency	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	C3orf30	NM_152539	exon1	c.G694A	p.V232I	.	.	44	25	74	0	G|0.998;A|0.002	92
C6orf58	352999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127899881	127899881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	C6orf58	NM_001010905	exon2	c.G352C	p.D118H	.	.	65	28	99	0	.	90
CBLB	868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	105459455	105459455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CBLB	NM_170662	exon7	c.G866T	p.C289F	.	.	54	21	93	0	.	849
CCDC66	285331	hgsc.bcm.edu	37	3	56650054	56650054	+	Missense_Mutation	SNP	T	T	C	rs111934125		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CCDC66	NM_001141947	exon13	c.T1816C	p.S606P	.	.	70	4	143	0	C|1.000;|0.000	135
CDH1	999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	68849486	68849486	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	CDH1,NS,carcinoma,+2	CDH1	NM_004360	exon10	c.G1389A	p.E463E	.	.	73	34	154	0	.	3377
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6701152	6701152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CHD4	NM_001273	exon20	c.C3020T	p.S1007F	.	.	83	41	133	0	.	228
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	146825914	146825914	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CNTNAP2	NM_014141	exon7	c.G1069T	p.E357X	.	.	115	32	179	0	.	100
COL7A1	1294	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48610318	48610318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	COL7A1	NM_000094	exon86	c.G6808T	p.D2270Y	.	.	79	29	117	1	.	160
CREB3L3	84699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4171379	4171379	+	Splice_Site	SNP	G	G	A	rs112561919	bycluster	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CREB3L3	NM_001271995	exon9	c.973-1G>A	.	.	.	115	27	96	0	C|1.000	92
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43160821	43160821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	CUL9	NM_015089	exon9	c.C2263T	p.L755F	.	.	87	54	75	0	.	529
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52361949	52361949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	DNAH1	NM_015512	exon6	c.A790G	p.M264V	.	.	126	67	200	0	.	67
EML6	400954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55185121	55185121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	.	NM_001039753	exon32	c.G4681T	p.V1561L	.	.	30	11	52	0	.	.
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222428734	222428734	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	EPHA4	NM_004438	exon3	c.G540A	p.G180G	.	.	49	23	92	0	.	1441
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16577608	16577609	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	FBXO42	NM_018994	exon10	c.1711_1712insG	p.P571fs	.	.	31	22	91	0	.	228
FOXD4L3	286380	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	70918928	70918928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	FOXD4L3	NM_199135	exon1	c.C1061T	p.T354I	.	.	406	70	628	0	.	40
FSTL5	56884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	162697194	162697194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	FSTL5	NM_020116	exon5	c.A442C	p.M148L	.	.	92	39	160	1	.	158
GATA6	2627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	19756976	19756976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GATA6	NM_005257	exon3	c.C1196T	p.P399L	.	.	35	14	36	0	.	514
GLYAT	10249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58477472	58477472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GLYAT	NM_201648	exon6	c.G658A	p.D220N	.	.	70	32	107	0	.	90
GPR137B	7107	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	236306038	236306038	+	Missense_Mutation	SNP	C	C	A	rs199613305	alternate_allele	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GPR137B	NM_003272	exon1	c.C116A	p.P39H	.	.	104	31	67	0	C|0.999;T|0.001	90
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	126173751	126173751	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GRM8	NM_000845	exon8	c.C1685G	p.P562R	.	.	110	62	187	0	.	581
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	89318944	89318944	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	GTF2B	NM_001514	exon7	c.903delT	p.P301fs	.	.	40	12	73	0	.	154
HHEX	3087	broad.mit.edu	37	10	94449930	94449930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	HHEX	NM_002729	exon1	c.T187C	p.S63P	.	.	185	6	207	2	.	227
HYDIN	54768	broad.mit.edu	37	16	71103269	71103269	+	Silent	SNP	T	T	C	rs144904028		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	HYDIN	NM_001198542	exon14	c.A1956G	p.P652P	.	.	76	4	106	0	.	92
IKBKB	3551	ucsc.edu;bcgsc.ca	37	8	42146229	42146229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	IKBKB	NM_001556	exon3	c.G183T	p.E61D	.	.	26	4	37	0	.	1164
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35258604	35258604	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ITSN1	NM_003024	exon39	c.G4857A	p.P1619P	.	.	113	51	166	0	.	94
KCNJ4	3761	broad.mit.edu	37	22	38823043	38823043	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	KCNJ4	NM_004981	exon2	c.G1095A	p.P365P	.	.	34	3	59	0	.	90
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26970215	26970215	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	KIAA0100	NM_014680	exon4	c.C363G	p.S121S	.	.	51	21	81	0	.	93
KLF1	10661	broad.mit.edu	37	19	12995787	12995787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	KLF1	NM_006563	exon3	c.C1001T	p.T334M	.	.	45	3	50	0	.	90
KRT76	51350	broad.mit.edu	37	12	53165969	53165969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	KRT76	NM_015848	exon5	c.A1046G	p.D349G	.	.	124	4	175	0	.	154
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49162918	49162918	+	Splice_Site	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	LAMB2	NM_002292	exon20	c.2489-1G>T	.	.	.	121	39	150	0	.	93
LINC00202-2	731789	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	26939568	26939568	+	RNA	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	.	.	.	.	.	.	.	10	4	19	0	.	.
LYST	1130	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235955200	235955200	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	LYST	NM_000081	exon12	c.C4342G	p.L1448V	.	.	164	30	137	0	.	143
MED24	9862	broad.mit.edu	37	17	38209618	38209618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	MED24	NM_014815	exon3	c.A146G	p.Q49R	.	.	72	4	118	0	.	187
MEP1A	4224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46797206	46797206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	MEP1A	NM_005588	exon10	c.T1042C	p.Y348H	.	.	120	34	131	0	.	183
MUC21	394263	broad.mit.edu	37	6	30954534	30954534	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	MUC21	NM_001010909	exon2	c.T582A	p.T194T	.	.	51	6	56	3	.	92
MUC4	4585	bcgsc.ca	37	3	195512460	195512460	+	Silent	SNP	A	A	G	rs201804964	byfrequency	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	MUC4	NM_018406	exon2	c.T5991C	p.H1997H	.	.	213	34	335	5	A|0.986;G|0.013	90
MUC4	4585	bcgsc.ca	37	3	195512501	195512501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	MUC4	NM_018406	exon2	c.C5950T	p.P1984S	.	.	229	18	332	10	.	90
MUC4	4585	broad.mit.edu	37	3	195512493	195512493	+	Silent	SNP	A	A	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	MUC4	NM_018406	exon2	c.T5958G	p.P1986P	.	.	216	7	339	1	.	90
MYO15A	51168	broad.mit.edu	37	17	18052893	18052893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	MYO15A	NM_016239	exon34	c.C7211T	p.A2404V	.	.	60	4	91	0	.	97
NCOA7	135112	broad.mit.edu	37	6	126249788	126249788	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	NCOA7,NS,carcinoma,+1	NCOA7	NM_001199619	exon17	c.A2700T	p.R900R	.	.	49	8	68	9	.	227
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29592294	29592294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	NF1	NM_001042492	exon36	c.G4772A	p.S1591N	.	.	90	34	148	0	.	3353
OSBPL5	114879	ucsc.edu	37	11	3141719	3141719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	OSBPL5	NM_020896	exon6	c.C538A	p.P180T	.	.	39	4	73	0	.	113
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237151	140237151	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PCDHA10	NM_031859	exon1	c.C1518T	p.Y506Y	.	.	63	32	92	0	.	99
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140558018	140558018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PCDHB8	NM_019120	exon1	c.C403A	p.L135M	.	.	963	126	1554	1	.	131
PCLO	27445	hgsc.bcm.edu;bcgsc.ca	37	7	82390054	82390055	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PCLO	NM_033026	exon24	c.15189_15190insA	p.K5063fs	.	.	195	72	325	0	.	29
PDE3A	5139	broad.mit.edu	37	12	20801742	20801742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PDE3A	NM_000921	exon13	c.C2686A	p.H896N	.	.	90	5	133	0	.	94
PLCB4	5332	broad.mit.edu	37	20	9382162	9382162	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PLCB4	NM_182797	exon18	c.C1536T	p.P512P	.	.	59	3	106	0	.	274
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14537872	14537872	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	POTEC	NM_001137671	exon3	c.T738C	p.A246A	.	.	178	81	319	0	.	3
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69030794	69030794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PREX2	NM_024870	exon27	c.C3336A	p.N1112K	.	.	50	24	69	0	.	390
PRF1	5551	ucsc.edu;bcgsc.ca	37	10	72358910	72358910	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PRF1	NM_001083116	exon3	c.G567A	p.L189L	.	.	45	5	89	0	.	578
PSD3	23362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	18730005	18730005	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PSD3	NM_015310	exon3	c.C369T	p.L123L	.	.	73	35	91	0	.	93
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114399229	114399229	+	Missense_Mutation	SNP	G	G	A	rs115552198	byfrequency	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PTPN22	NM_015967	exon6	c.C421T	p.R141C	.	.	117	43	209	0	G|1.000;A|0.000	227
PWP2	5822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45534063	45534063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	PWP2	NM_005049	exon4	c.G230A	p.G77D	.	.	22	14	46	0	.	91
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48953788	48953788	+	Splice_Site	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RB1	NM_000321	exon14	c.1389+2T>C	.	.	.	72	49	310	0	.	3784
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34292616	34292616	+	Missense_Mutation	SNP	T	T	C	rs199587566		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RBM39	NM_184234	exon16	c.A1466G	p.N489S	.	.	127	58	218	0	T|0.999;C|0.000	91
RECQL4	9401	hgsc.bcm.edu	37	8	145742465	145742465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RECQL4	NM_004260	exon4	c.G323T	p.R108L	.	.	57	4	86	0	.	1083
RERGL	79785	hgsc.bcm.edu	37	12	18241889	18242060	+	Frame_Shift_Del	DEL	GGCTGCAAAGCAAACAATCTAGATTTAGGGCTGTTATATTTTAGGAAACAGCTAATTTGGTTATGTGCATAAGGCTTTAGTTCTTAAACCAAAAATATTCAAGAATTAATAAAGACTTTAAAATTAGACCAAATTCTGTTCTAAATAGTAGTTAACAATATTTCCATGGTAC	GGCTGCAAAGCAAACAATCTAGATTTAGGGCTGTTATATTTTAGGAAACAGCTAATTTGGTTATGTGCATAAGGCTTTAGTTCTTAAACCAAAAATATTCAAGAATTAATAAAGACTTTAAAATTAGACCAAATTCTGTTCTAAATAGTAGTTAACAATATTTCCATGGTAC	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	GGCTGCAAAGCAAACAATCTAGATTTAGGGCTGTTATATTTTAGGAAACAGCTAATTTGGTTATGTGCATAAGGCTTTAGTTCTTAAACCAAAAATATTCAAGAATTAATAAAGACTTTAAAATTAGACCAAATTCTGTTCTAAATAGTAGTTAACAATATTTCCATGGTAC	GGCTGCAAAGCAAACAATCTAGATTTAGGGCTGTTATATTTTAGGAAACAGCTAATTTGGTTATGTGCATAAGGCTTTAGTTCTTAAACCAAAAATATTCAAGAATTAATAAAGACTTTAAAATTAGACCAAATTCTGTTCTAAATAGTAGTTAACAATATTTCCATGGTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RERGL	NM_024730	exon3	c.56_57del	p.19_19del	.	.	79	0	137	0	.	659
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	111694495	111694495	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	REV3L	NM_002912	exon13	c.5063delG	p.G1688fs	.	.	62	22	115	0	.	294
RPS6KA3	6197	broad.mit.edu	37	X	20204446	20204446	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RPS6KA3	NM_004586	exon10	c.A813G	p.K271K	.	.	217	4	373	2	.	1504
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237774131	237774131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	RYR2	NM_001035	exon36	c.C4753T	p.R1585C	.	.	133	55	135	0	.	158
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167163101	167163101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	SCN9A	NM_002977	exon4	c.G386T	p.S129I	.	.	59	24	65	0	.	181
SDF4	51150	bcgsc.ca	37	1	1164046	1164069	+	In_Frame_Del	DEL	GACGAGTGGTTGGCAGGCCGTGCA	GACGAGTGGTTGGCAGGCCGTGCA	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	GACGAGTGGTTGGCAGGCCGTGCA	GACGAGTGGTTGGCAGGCCGTGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	SDF4	NM_016547	exon2	c.105_128del	p.35_43del	.	.	22	3	105	0	.	154
SDHAP2	727956	ucsc.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs77981248		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	.	.	.	.	.	.	.	59	7	87	2	A|0.500;G|0.500	.
SETX	23064	bcgsc.ca	37	9	135205059	135205059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	SETX	NM_015046	exon10	c.C1926A	p.S642R	.	.	52	4	90	0	.	93
SMARCC1	6599	bcgsc.ca	37	3	47770519	47770519	+	Missense_Mutation	SNP	G	G	T	rs184251353	alternate_allele	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	SMARCC1	NM_003074	exon6	c.C642A	p.D214E	.	.	61	4	124	1	G|0.999;A|0.000	228
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	98	22	105	0	A|0.000;C|0.697;T|0.303	45
SSUH2	51066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	8665330	8665330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	.	NM_001256748	exon11	c.G886A	p.V296M	.	.	35	9	64	0	.	.
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10783658	10783658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	STYK1	NM_018423	exon5	c.T437C	p.L146P	.	.	87	13	151	0	.	1379
SULT1C3	442038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108872149	108872149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	SULT1C3	NM_001008743	exon4	c.G521C	p.G174A	.	.	37	20	74	0	.	91
TAF15	8148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34149836	34149836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TAF15	NM_139215	exon6	c.A483C	p.Q161H	.	.	144	55	264	0	.	723
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72975718	72975718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TRPA1	NM_007332	exon5	c.T641A	p.M214K	.	.	41	25	69	0	.	230
TTN	7273	hgsc.bcm.edu	37	2	179544684	179544702	+	Frame_Shift_Del	DEL	ACTCTTCTTCTTCTTCTAC	ACTCTTCTTCTTCTTCTAC	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	ACTCTTCTTCTTCTTCTAC	ACTCTTCTTCTTCTTCTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TTN	NM_001267550	exon140	c.33499_33517del	p.11167_11173del	.	.	90	0	130	0	.	636
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179544684	179544699	+	Frame_Shift_Del	DEL	ACTCTTCTTCTTCTTC	ACTCTTCTTCTTCTTC	-	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	ACTCTTCTTCTTCTTC	ACTCTTCTTCTTCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TTN	NM_001267550	exon140	c.33502_33517del	p.11168_11173del	.	.	90	22	130	0	.	636
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179544702	179544702	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TTN	NM_001267550	exon140	c.G33499C	p.V11167L	.	.	85	24	150	0	.	636
TUBAL3	79861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5437418	5437418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	TUBAL3	NM_024803	exon3	c.C268A	p.H90N	.	.	98	38	123	0	.	91
UBXN4	23190	ucsc.edu;bcgsc.ca	37	2	136505940	136505940	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	UBXN4	NM_014607	exon2	c.185+1G>T	.	.	.	33	4	41	0	.	92
VEZF1	7716	hgsc.bcm.edu	37	17	56056604	56056604	+	Silent	SNP	T	T	C	rs138088904	byfrequency	TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	VEZF1	NM_007146	exon5	c.A1047G	p.Q349Q	.	.	59	4	79	0	T|0.999;C|0.001	136
VIPAS39	63894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77895420	77895420	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	.	NM_001193314	exon18	c.A1285C	p.N429H	.	.	42	17	81	0	.	.
VSIG4	11326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65244890	65244890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	VSIG4	NM_001257403	exon6	c.T917C	p.L306P	.	.	269	58	456	0	.	130
ZNF257	113835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22271464	22271464	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ZNF257	NM_033468	exon4	c.T912C	p.T304T	.	.	95	52	114	0	.	90
ZNF350	59348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52468329	52468329	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ZNF350	NM_021632	exon5	c.G1377A	p.G459G	.	.	76	10	100	0	.	227
ZNF703	80139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37553564	37553564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	ZNF703	NM_025069	exon1	c.G67A	p.G23S	.	.	39	27	65	0	.	523
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58520174	58520175	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-RC-A7S9-01A-11D-A33Q-10	TCGA-RC-A7S9-10A-02D-A33Q-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	51aa8270-daf2-45af-b4a7-b80b053bada3	0a31c7e6-f1af-4ff5-8011-67d8e91a85d6	.	.	.	.	.	p.A79N	.	.	.	.	.	.	.	
