Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	ucsc.edu	37	12	9002355	9002355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	A2ML1	NM_144670	exon17	c.G2119A	p.A707T	.	.	39	4	51	0	.	93
AASDHPPT	60496	ucsc.edu	37	11	105950261	105950261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	AASDHPPT	NM_015423	exon2	c.T251C	p.L84S	.	.	32	4	88	0	.	90
ABCB11	8647	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169828460	169828460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ABCB11	NM_003742	exon14	c.T1535C	p.I512T	.	.	78	29	105	1	.	139
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48745041	48745041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ABCC3	NM_003786	exon12	c.G1558A	p.G520S	.	.	29	11	38	0	.	93
ALG1L2	644974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129811015	129811015	+	Missense_Mutation	SNP	C	C	T	rs183887858		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001136152	exon3	c.C203T	p.T68M	.	.	70	25	133	0	C|0.999;T|0.001	.
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41552758	41552758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ANK1	NM_001142446	exon28	c.A3175G	p.K1059E	.	.	21	17	43	0	.	716
AQP11	282679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77301291	77301291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	AQP11	NM_173039	exon1	c.T254C	p.F85S	.	.	65	44	58	1	.	90
ATP10D	57205	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47563023	47563023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ATP10D	NM_020453	exon14	c.A2599T	p.S867C	.	.	44	17	79	2	.	93
BUB1B	701	ucsc.edu	37	15	40492528	40492528	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	BUB1B	NM_001211	exon11	c.C1485A	p.S495S	.	.	47	4	86	0	.	1509
BVES	11149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105577315	105577315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	BVES	NM_001199563	exon3	c.A290G	p.N97S	.	.	78	31	105	1	.	90
C9orf131	138724	ucsc.edu	37	9	35044426	35044426	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	C9orf131	NM_203299	exon2	c.T1800A	p.S600S	.	.	35	4	77	0	.	90
CA11	770	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49143430	49143430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CA11	NM_001217	exon4	c.T393A	p.S131R	.	.	39	17	48	1	.	90
CABIN1	23523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24573522	24573522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CABIN1	NM_001199281	exon36	c.G6256A	p.A2086T	.	.	19	9	27	0	.	94
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40060133	40060133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CACNA1I	NM_021096	exon20	c.C3635A	p.T1212K	.	.	46	16	53	0	.	135
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62467525	62467525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CADPS	NM_003716	exon22	c.C3046A	p.P1016T	.	.	110	34	164	0	.	281
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72540897	72540897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CD300C	NM_006678	exon2	c.T251A	p.I84N	.	.	50	15	96	0	.	90
CD68	968	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7483796	7483796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CD68	NM_001251	exon3	c.T580C	p.S194P	.	.	22	10	45	1	.	90
CDKN1A	1026	broad.mit.edu;bcgsc.ca	37	6	36651926	36651926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CDKN1A	NM_001220778	exon2	c.48delG	p.K16fs	.	.	19	7	44	0	.	872
CEP55	55165	ucsc.edu;bcgsc.ca	37	10	95276895	95276895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CEP55	NM_001127182	exon6	c.G883A	p.E295K	.	.	109	49	155	2	.	90
CHFR	55743	ucsc.edu	37	12	133435727	133435727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CHFR	NM_001161344	exon8	c.G874A	p.A292T	.	.	22	4	43	0	.	227
CHIT1	1118	bcgsc.ca	37	1	203186947	203186947	+	Missense_Mutation	SNP	G	G	C	rs201682373	byfrequency	TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CHIT1	NM_003465	exon10	c.C1076G	p.A359G	.	.	14	4	20	0	G|0.988;C|0.012	90
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175624301	175624301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CHRNA1	NM_001039523	exon2	c.A104C	p.Y35S	.	.	33	9	38	0	.	518
CILP2	148113	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19651990	19651990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CILP2	NM_153221	exon4	c.C527T	p.P176L	.	.	22	9	20	0	.	91
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41594950	41594950	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CYP2A13	NM_000766	exon2	c.C297T	p.S99S	.	.	49	20	92	0	.	93
DDX12P	440081	ucsc.edu	37	12	9585339	9585339	+	RNA	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	.	.	.	.	.	.	62	10	58	0	.	.
DDX41	51428	ucsc.edu	37	5	176943725	176943725	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	DDX41	NM_016222	exon3	c.138+1G>A	.	.	.	37	4	43	0	.	226
DIO1	1733	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	54359901	54359901	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	DIO1	NM_001039715	exon1	c.A18G	p.P6P	.	.	68	19	102	2	.	90
DOCK1	1793	ucsc.edu	37	10	129224199	129224199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	DOCK1	NM_001380	exon47	c.C4775T	p.P1592L	.	.	32	4	63	0	.	698
DROSHA	29102	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31451640	31451640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	DROSHA	NM_013235	exon20	c.G2682T	p.Q894H	.	.	232	111	272	3	.	227
E2F7	144455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	77427753	77427753	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	E2F7	NM_203394	exon8	c.A1193C	p.Q398P	.	.	67	36	113	0	.	228
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	110925746	110925746	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	EGF	NM_001963	exon22	c.G3259T	p.E1087X	.	.	38	11	46	0	.	524
ENOX2	10495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129813524	129813524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ENOX2	NM_182314	exon7	c.A539G	p.Y180C	.	.	49	43	83	0	.	131
FAAH	2166	ucsc.edu	37	1	46878887	46878887	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FAAH	NM_001441	exon14	c.C1606T	p.Q536X	.	.	24	4	45	0	.	154
FADD	8772	bcgsc.ca;mdanderson.org	37	11	70049785	70049785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FADD	NM_003824	exon1	c.G220T	p.D74Y	.	.	116	95	28	1	.	660
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71243558	71243558	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FAM135A	NM_001105531	exon18	c.3377+1G>T	.	.	.	63	16	65	0	.	90
FAM222A	84915	ucsc.edu	37	12	110206342	110206342	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_032829	exon3	c.T608A	p.L203Q	.	.	27	4	24	0	.	.
FIG4	9896	ucsc.edu	37	6	110146392	110146392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FIG4	NM_014845	exon23	c.G2648A	p.S883N	.	.	38	4	65	0	.	69
FOXA3	3171	ucsc.edu	37	19	46375340	46375340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FOXA3	NM_004497	exon2	c.C77T	p.S26L	.	.	22	4	34	0	.	226
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46000930	46000930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FYCO1	NM_024513	exon12	c.A3542G	p.D1181G	.	.	48	14	89	0	.	91
GRPEL1	80273	ucsc.edu	37	4	7062641	7062641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	GRPEL1	NM_025196	exon4	c.T602C	p.L201P	.	.	31	4	39	0	.	90
HFM1	164045	ucsc.edu;bcgsc.ca	37	1	91843964	91843964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	HFM1	NM_001017975	exon10	c.A1232C	p.D411A	.	.	185	67	251	3	.	112
HSPG2	3339	ucsc.edu	37	1	22206909	22206909	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	HSPG2	NM_005529	exon16	c.C2142T	p.T714T	.	.	41	4	55	0	.	141
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94267913	94267913	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IDE	NM_004969	exon8	c.T1110C	p.F370F	.	.	111	41	170	0	.	92
IFI27L2	83982	ucsc.edu;bcgsc.ca	37	14	94594892	94594892	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IFI27L2	NM_032036	exon3	c.G158C	p.G53A	.	.	18	4	35	0	.	90
IL7	3574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	79652259	79652259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IL7	NM_000880	exon3	c.G206T	p.R69I	.	.	690	84	266	1	.	226
IRF4	3662	ucsc.edu	37	6	401711	401711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IRF4	NM_002460	exon7	c.G1033T	p.D345Y	.	.	33	4	51	0	.	659
ITM2A	9452	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78618536	78618536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ITM2A	NM_004867	exon3	c.C344T	p.A115V	.	.	69	54	110	1	.	131
JAZF1	221895	ucsc.edu	37	7	27934930	27934930	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	JAZF1	NM_175061	exon3	c.C294T	p.S98S	.	.	30	4	39	0	.	808
JUNB	3726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12902979	12902979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	JUNB	NM_002229	exon1	c.C394A	p.Q132K	.	.	33	16	35	0	.	846
KIAA0319L	79932	broad.mit.edu	37	1	35920055	35920055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA0319L	NM_024874	exon11	c.C1688T	p.A563V	.	.	69	4	108	2	.	92
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33235673	33235673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA1522	NM_020888	exon6	c.G893T	p.R298L	.	.	37	17	36	0	.	90
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	22471762	22471762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA1967	NM_021174	exon9	c.G862C	p.E288Q	.	.	23	15	70	0	.	92
KIF1A	547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241664710	241664710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIF1A	NM_001244008	exon40	c.G4234A	p.G1412R	.	.	14	6	30	0	.	91
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57957422	57957422	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIF5A	NM_004984	exon3	c.T237C	p.N79N	.	.	116	39	183	2	.	517
KRT6B	3854	broad.mit.edu;bcgsc.ca	37	12	52845423	52845423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KRT6B	NM_005555	exon1	c.C440T	p.P147L	.	.	117	36	187	1	.	92
KRT6B	3854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52845422	52845422	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KRT6B	NM_005555	exon1	c.C441A	p.P147P	.	.	114	34	187	0	.	92
KRTAP5-4	387267	broad.mit.edu	37	11	1643303	1643303	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001012709	exon1	c.T21C	p.S7S	.	.	119	15	127	3	.	.
LIPC	3990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58830682	58830682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	LIPC	NM_000236	exon2	c.C239T	p.S80F	.	.	44	11	80	0	.	91
LYL1	4066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13211948	13211948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	LYL1	NM_005583	exon2	c.C38T	p.T13I	.	.	37	10	35	0	.	658
MAATS1	89876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119466699	119466699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_033364	exon16	c.T2093C	p.V698A	.	.	61	19	95	1	.	.
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	39748038	39748038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	MACF1	NM_012090	exon8	c.C702A	p.H234Q	.	.	50	16	62	0	.	165
MAN2B2	23324	ucsc.edu	37	4	6612812	6612812	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	MAN2B2	NM_015274	exon15	c.2371-1G>T	.	.	.	28	4	45	0	.	92
MAS1L	116511	ucsc.edu	37	6	29455534	29455534	+	Missense_Mutation	SNP	C	C	T	rs147443958	byfrequency	TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	MAS1L	NM_052967	exon1	c.G146A	p.G49D	.	.	36	4	53	0	A|0.000;C|0.998;T|0.002	527
MDGA1	266727	ucsc.edu	37	6	37615014	37615014	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	MDGA1	NM_153487	exon10	c.C1981T	p.Q661X	.	.	30	4	34	0	.	91
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204009591	204009591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NBEAL1	NM_001114132	exon31	c.G5030T	p.C1677F	.	.	81	29	103	0	.	92
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69689669	69689669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NFAT5	NM_001113178	exon6	c.T1163C	p.V388A	.	.	23	15	67	0	.	90
NME8	51314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	37890296	37890296	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_016616	exon5	c.A157T	p.K53X	.	.	88	24	97	0	.	.
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120431544	120431544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NOV	NM_002514	exon4	c.G736A	p.V246M	.	.	84	18	24	0	.	228
NSD1	64324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562319	176562319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NSD1	NM_022455	exon2	c.T215G	p.L72R	.	.	68	35	73	1	.	188
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	226378129	226378129	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_020864	exon3	c.264delG	p.V88fs	.	.	55	26	101	0	.	.
OR13D1	286365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107457526	107457526	+	Missense_Mutation	SNP	C	C	T	rs182904893		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	OR13D1	NM_001004484	exon1	c.C824T	p.A275V	.	.	114	19	150	1	C|0.999;T|0.000	70
OR1L8	138881	ucsc.edu	37	9	125330351	125330351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	OR1L8	NM_001004454	exon1	c.A406G	p.T136A	.	.	42	4	42	0	.	70
OR2M1P	388762	ucsc.edu;bcgsc.ca	37	1	248285557	248285557	+	RNA	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	OR2M1P	.	.	.	.	.	.	90	27	113	0	.	46
PCLO	27445	broad.mit.edu;bcgsc.ca	37	7	82582627	82582636	+	Frame_Shift_Del	DEL	TCACTAAATT	TCACTAAATT	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	TCACTAAATT	TCACTAAATT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PCLO	NM_014510	exon5	c.7633_7642del	p.2545_2548del	.	.	35	8	53	0	.	29
PCP4L1	654790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161254248	161254248	+	Silent	SNP	A	A	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001102566	exon3	c.A184C	p.R62R	.	.	164	53	215	1	.	.
PDE8A	5151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85610300	85610300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDE8A	NM_173454	exon3	c.G299T	p.C100F	.	.	41	17	62	1	.	94
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85610299	85610299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDE8A	NM_173454	exon3	c.T298A	p.C100S	.	.	41	17	61	0	.	94
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73453378	73453378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDZRN3	NM_015009	exon4	c.A1087C	p.T363P	.	.	83	30	109	0	.	232
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	592654	592654	+	Silent	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PHRF1	NM_020901	exon6	c.C600G	p.L200L	.	.	26	8	40	0	.	22
POM121L12	285877	bcgsc.ca	37	7	53103917	53103917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_182595	exon1	c.T553A	p.C185S	.	.	19	4	19	0	.	.
PPP1R14B	26472	ucsc.edu	37	11	64012265	64012265	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PPP1R14B	NM_138689	exon4	c.C405A	p.I135I	.	.	30	4	52	0	.	658
PRKCQ	5588	broad.mit.edu;bcgsc.ca	37	10	6521125	6521125	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRKCQ	NM_006257	exon12	c.C1182A	p.V394V	.	.	99	7	113	0	.	1380
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76063483	76063483	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRKRIR	NM_004705	exon5	c.G711A	p.Q237Q	.	.	313	200	176	0	.	93
PRX	57716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40900384	40900384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRX	NM_181882	exon7	c.A3875T	p.Q1292L	.	.	14	5	26	0	.	92
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40979316	40979316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PTPRT	NM_007050	exon11	c.C1817A	p.T606N	.	.	40	18	48	0	.	664
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220406191	220406191	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	RAB3GAP2	NM_012414	exon2	c.T130G	p.W44G	.	.	174	76	219	0	.	90
RAP1GAP2	23108	bcgsc.ca	37	17	2861087	2861087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	RAP1GAP2	NM_001100398	exon4	c.A200T	p.Q67L	.	.	63	5	116	0	.	1
RHPN2	85415	ucsc.edu	37	19	33493245	33493245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	RHPN2	NM_033103	exon9	c.C1013A	p.P338H	.	.	38	4	65	0	.	516
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	64643503	64643503	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ROR1	NM_005012	exon9	c.G1779T	p.L593L	.	.	48	19	56	0	.	1536
SAMD14	201191	ucsc.edu	37	17	48191664	48191664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SAMD14	NM_174920	exon9	c.A913G	p.T305A	.	.	29	4	57	0	.	68
SATB1	6304	ucsc.edu	37	3	18458530	18458530	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SATB1	NM_002971	exon3	c.A252T	p.E84D	.	.	45	4	53	0	.	228
SC5D	6309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121177921	121177921	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001024956	exon5	c.G600A	p.L200L	.	.	80	22	201	0	.	.
SCLT1	132320	bcgsc.ca	37	4	129878234	129878234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SCLT1	NM_144643	exon13	c.A1093G	p.K365E	.	.	422	151	576	11	.	525
SHANK1	50944	ucsc.edu	37	19	51175274	51175274	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SHANK1	NM_016148	exon22	c.2674+1G>A	.	.	.	28	4	40	0	.	153
SHKBP1	92799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41096160	41096160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SHKBP1	NM_138392	exon16	c.G1600T	p.V534L	.	.	28	7	42	0	.	92
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77676213	77676213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SHROOM3	NM_020859	exon7	c.T4577G	p.L1526R	.	.	25	9	31	0	.	93
SMARCA4	6597	ucsc.edu	37	19	11101849	11101849	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SMARCA4	NM_003072	exon8	c.C1269T	p.C423C	.	.	43	4	57	0	.	1523
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1204797	1204797	+	Silent	SNP	G	G	T	rs141600263	alternate_allele	TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	SNTG2,NS,carcinoma,+1	SNTG2	NM_018968	exon9	c.G600T	p.S200S	.	.	24	12	58	0	G|0.999;A|0.000	136
SOX10	6663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38379513	38379513	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SOX10	NM_006941	exon2	c.C279A	p.R93R	.	.	28	15	67	1	.	650
SPCS3	60559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	177241334	177241334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPCS3	NM_021928	exon1	c.G107A	p.S36N	.	.	30	12	38	0	.	23
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	80911669	80911669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPRY2	NM_005842	exon2	c.G172T	p.G58W	.	.	42	21	95	0	.	659
SPTBN4	57731	ucsc.edu	37	19	41060520	41060520	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPTBN4	NM_020971	exon24	c.C5052T	p.C1684C	.	.	38	4	60	0	.	94
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42149449	42149449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPTBN5	NM_016642	exon51	c.C8503T	p.R2835W	.	.	19	5	34	0	.	91
TBL1X	6907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	9677338	9677338	+	Silent	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TBL1X	NM_001139466	exon14	c.C1287G	p.S429S	.	.	52	33	93	0	.	131
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166981307	166981307	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TLL1	NM_012464	exon15	c.G1974A	p.V658V	.	.	54	17	95	0	.	158
TMEM106B	54664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12269401	12269401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM106B	NM_001134232	exon5	c.C538T	p.R180C	.	.	236	73	309	1	.	90
TMEM129	92305	broad.mit.edu;bcgsc.ca	37	4	1720290	1720298	+	In_Frame_Del	DEL	GGGGCCTGG	GGGGCCTGG	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	GGGGCCTGG	GGGGCCTGG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM129	NM_001127266	exon2	c.261_269del	p.87_90del	.	.	23	8	43	0	.	68
TMEM182	130827	bcgsc.ca;mdanderson.org	37	2	103431388	103431388	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM182	NM_144632	exon5	c.A651G	p.L217L	.	.	88	29	119	3	.	90
TMEM45A	55076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100275609	100275609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM45A	NM_018004	exon3	c.G196T	p.A66S	.	.	91	36	132	1	.	93
TMEM63B	55362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44119668	44119668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TMEM63B	NM_018426	exon19	c.C1759T	p.R587C	.	.	39	6	79	1	.	92
TPM1	7168	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63336290	63336290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TPM1	NM_001018005	exon2	c.A179G	p.Y60C	.	.	42	15	59	1	.	90
TRIM56	81844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100732207	100732207	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TRIM56	NM_030961	exon3	c.C1614T	p.G538G	.	.	25	8	27	0	.	226
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	75013758	75013758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTC18	NM_145170	exon28	c.T3341C	p.V1114A	.	.	41	25	69	0	.	92
TTC38	55020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46677505	46677505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTC38	NM_017931	exon7	c.A625G	p.I209V	.	.	43	14	64	0	.	91
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219614829	219614829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTLL4	NM_014640	exon15	c.A2833G	p.I945V	.	.	42	14	61	0	.	93
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5530137	5530137	+	Missense_Mutation	SNP	G	G	A	rs201719446		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	UBQLN3,NS,carcinoma,0	UBQLN3	NM_017481	exon2	c.C652T	p.R218W	.	.	50	17	64	1	G|0.999;A|0.000	93
UBTD2	92181	bcgsc.ca	37	5	171639164	171639164	+	Silent	SNP	C	C	T	rs77455843	byfrequency	TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	UBTD2	NM_152277	exon3	c.G375A	p.P125P	.	.	129	7	128	0	C|0.991;T|0.009	90
USF1	7391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161011514	161011514	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	USF1	NM_001276373	exon6	c.G399T	p.S133S	.	.	48	28	53	0	.	516
USP42	84132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6185161	6185161	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	USP42	NM_032172	exon10	c.T1005A	p.P335P	.	.	74	21	119	1	.	659
VWA7	80737	ucsc.edu	37	6	31741186	31741186	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_025258	exon6	c.C750T	p.D250D	.	.	24	4	25	0	.	.
XIRP2	129446	bcgsc.ca;mdanderson.org	37	2	168103401	168103401	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	XIRP2	NM_152381	exon9	c.A5499G	p.K1833K	.	.	31	10	58	0	.	104
XPNPEP1	7511	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	111642256	111642256	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	XPNPEP1	NM_001167604	exon10	c.C975T	p.L325L	.	.	41	18	59	1	.	94
ZBTB14	7541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5291933	5291933	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001243702	exon4	c.T274A	p.Y92N	.	.	52	30	149	0	.	.
ZCWPW2	152098	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	28520305	28520305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZCWPW2	NM_001040432	exon4	c.C493A	p.P165T	.	.	162	57	147	1	.	24
ZHX1	11244	ucsc.edu;bcgsc.ca	37	8	124265573	124265573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZHX1	NM_007222	exon3	c.G2614A	p.D872N	.	.	347	277	130	2	.	91
ZHX2	22882	bcgsc.ca;mdanderson.org	37	8	123965871	123965871	+	Silent	SNP	C	C	T	rs186468091		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZHX2	NM_014943	exon3	c.C2121T	p.A707A	.	.	68	52	21	1	C|0.999;T|0.000	227
ZNF284	342909	broad.mit.edu	37	19	44589934	44589934	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001037813	exon5	c.G303A	p.Q101Q	.	.	55	4	86	0	.	.
ZNF438	220929	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31134175	31134175	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZNF438	NM_001143768	exon7	c.G2202A	p.Q734Q	.	.	111	32	154	1	.	154
ZNF708	7562	broad.mit.edu;mdanderson.org	37	19	21477158	21477158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ZNF708	NM_021269	exon4	c.G610A	p.A204T	.	.	31	7	41	1	.	516
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	182	89	190	5	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	141	50	160	1	.	.
POR	5447	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75610852	75610853	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	TC	TC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	.	.	.	p.I271K	.	.	.	.	.	.	.	
