Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	18888005	18888005	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADAMTSL1	NM_001040272	exon24	c.4426delG	p.G1476fs	.	.	96	16	109	0	.	230
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100232814	100232814	+	Splice_Site	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADH1B	NM_000668	exon8	c.829-1G>A	.	.	.	59	7	65	0	.	136
ADNP2	22850	broad.mit.edu;bcgsc.ca	37	18	77896513	77896513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADNP2	NM_014913	exon4	c.A3217G	p.I1073V	.	.	62	4	65	0	.	140
AFTPH	54812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	64779926	64779926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	AFTPH	NM_017657	exon2	c.T1318G	p.S440A	.	.	67	5	69	0	.	70
AHNAK	79026	broad.mit.edu	37	11	62292058	62292058	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	AHNAK	NM_001620	exon5	c.A9831G	p.K3277K	.	.	46	3	51	0	.	109
ALS2CR11	151254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	202436741	202436741	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ALS2CR11	NM_001168217	exon8	c.A756G	p.L252L	.	.	54	14	36	0	.	155
AMZ2P1	201283	broad.mit.edu;ucsc.edu	37	17	62969319	62969319	+	RNA	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	.	.	.	20	6	17	0	.	.
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114275909	114275909	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ANK2	NM_001148	exon38	c.A6135G	p.T2045T	.	.	151	40	154	0	.	583
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94022288	94022288	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ANKRD32	NM_032290	exon16	c.A1986G	p.S662S	.	.	67	14	34	0	.	92
AP4B1-AS1	100287722	ucsc.edu	37	1	114442411	114442411	+	RNA	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	.	.	.	17	6	28	0	.	.
APBB1	322	broad.mit.edu	37	11	6417394	6417394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	APBB1	NM_001164	exon12	c.G1724A	p.R575H	.	.	47	3	62	0	.	136
APOBEC2	10930	broad.mit.edu	37	6	41029150	41029150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	APOBEC2	NM_006789	exon2	c.A215G	p.Y72C	.	.	109	4	72	0	.	226
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu	37	2	70188307	70188356	+	Frame_Shift_Del	DEL	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ASPRV1	NM_152792	exon1	c.465_514del	p.155_172del	.	.	70	7	65	0	.	69
ATG4C	84938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63294791	63294791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ATG4C	NM_178221	exon7	c.G877T	p.V293F	.	.	116	27	107	0	.	91
C3orf27	23434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128292489	128292489	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	C3orf27	NM_007354	exon3	c.C84T	p.R28R	.	.	115	24	126	0	.	90
C8B	732	bcgsc.ca	37	1	57411579	57411579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	C8B	NM_000066	exon7	c.T1020G	p.F340L	.	.	129	5	137	0	.	92
CCDC125	202243	hgsc.bcm.edu;bcgsc.ca	37	5	68595919	68595919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CCDC125	NM_176816	exon7	c.C736G	p.L246V	.	.	110	6	71	0	.	90
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550515	167550515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CCR6	NM_004367	exon3	c.G797A	p.C266Y	.	.	77	16	58	0	.	227
CCT6P1	643253	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	.	.	.	77	3	57	1	.	.
CD200R1	131450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112648003	112648003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CD200R1	NM_138939	exon4	c.C554T	p.S185L	.	.	80	11	72	0	.	93
CD69	969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9906144	9906144	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CD69	NM_001781	exon5	c.A533C	p.N178T	.	.	123	15	97	0	.	90
CHST1	8534	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45671573	45671573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CHST1	NM_003654	exon4	c.C901T	p.R301C	.	.	49	13	61	1	.	95
CHST3	9469	broad.mit.edu	37	10	73767898	73767898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CHST3	NM_004273	exon3	c.G1109A	p.R370H	.	.	52	4	65	0	.	90
CLSTN3	9746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	7295867	7295867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CLSTN3	NM_014718	exon12	c.A1807G	p.T603A	.	.	30	12	36	0	.	153
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41422971	41422971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CNTN1	NM_001843	exon23	c.G2930A	p.R977H	.	.	114	33	95	0	.	1149
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7851880	7851898	+	Frame_Shift_Del	DEL	GGGGGGCTCTGCCTGCTGA	GGGGGGCTCTGCCTGCTGA	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	GGGGGGCTCTGCCTGCTGA	GGGGGGCTCTGCCTGCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CNTROB	NM_001037144	exon17	c.2456_2474del	p.819_825del	.	.	91	20	150	0	.	153
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137713941	137713941	+	Splice_Site	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	COL5A1	NM_000093	exon59	c.4555-2A>T	.	.	.	28	9	25	0	.	524
CPA6	57094	hgsc.bcm.edu;bcgsc.ca	37	8	68658304	68658304	+	Missense_Mutation	SNP	A	A	G	rs147067921	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CPA6	NM_020361	exon1	c.T61C	p.F21L	.	.	225	13	126	0	A|1.000;T|0.000	92
CRELD2	79174	ucsc.edu	37	22	50315973	50315973	+	Silent	SNP	G	G	C	rs12160965	byfrequency	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CRELD2	NM_001135101	exon6	c.G621C	p.P207P	.	.	22	8	49	0	G|0.790;C|0.210	90
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	.	.	159	60	129	0	.	24361
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10785358	10785358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CTR9	NM_014633	exon9	c.G1126A	p.E376K	.	.	64	8	55	0	.	92
CYB5D2	124936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4058038	4058038	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CYB5D2	NM_144611	exon3	c.G462A	p.A154A	.	.	110	43	148	0	.	155
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15097	15097	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	ENST00000361789	exon1	c.T351C	p.I117I	.	.	22	4	26	0	.	.
DCAF12	25853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34089528	34089528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DCAF12	NM_015397	exon8	c.T1085C	p.L362P	.	.	52	23	45	0	.	90
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32234735	32234735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DEPDC5	NM_001242896	exon27	c.C2419T	p.L807F	.	.	58	20	87	0	.	519
DHX15	1665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24531241	24531241	+	Silent	SNP	T	T	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DHX15	NM_001358	exon13	c.A2253T	p.T751T	.	.	120	10	94	0	.	91
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38159367	38159367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DLEC1	NM_007337	exon33	c.G4556A	p.R1519Q	.	.	80	19	84	0	.	161
DNAH5	1767	broad.mit.edu	37	5	13759054	13759054	+	Silent	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DNAH5	NM_001369	exon61	c.C10320A	p.A3440A	.	.	99	4	85	0	.	182
DOCK8	81704	bcgsc.ca	37	9	340262	340262	+	Silent	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DOCK8	NM_203447	exon14	c.G1620T	p.P540P	.	.	66	4	62	0	.	517
DPCR1	135656	broad.mit.edu	37	6	30918388	30918388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DPCR1	NM_080870	exon2	c.T2147C	p.L716P	.	.	85	5	94	0	.	90
DPY19L2P2	349152	broad.mit.edu	37	7	102825947	102825947	+	RNA	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	.	.	.	185	8	147	2	.	.
DSPP	1834	hgsc.bcm.edu	37	4	88537513	88537513	+	Missense_Mutation	SNP	A	A	C	rs112275895		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DSPP	NM_014208	exon5	c.A3699C	p.E1233D	.	.	166	24	177	0	A|0.500;C|0.500	90
EFCAB13	124989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45452306	45452306	+	Missense_Mutation	SNP	C	C	T	rs144496511		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_152347	exon12	c.C1346T	p.T449M	.	.	184	8	149	0	C|0.999;T|0.001	.
EGFL8	80864	hgsc.bcm.edu	37	6	32135153	32135153	+	Missense_Mutation	SNP	G	G	T	rs149576421	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	EGFL8	NM_030652	exon7	c.G628T	p.A210S	.	.	116	5	98	0	G|1.000;A|0.000	90
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38409153	38409153	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	EGFLAM	NM_001205301	exon10	c.C1296T	p.H432H	.	.	67	14	66	0	.	187
ELL2	22936	broad.mit.edu	37	5	95297410	95297410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ELL2	NM_012081	exon1	c.A16G	p.T6A	.	.	150	28	103	11	.	90
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15255230	15255230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAM171A1	NM_001010924	exon8	c.C2357T	p.T786M	.	.	101	11	136	0	.	138
FAT4	79633	hgsc.bcm.edu;broad.mit.edu	37	4	126373179	126373179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAT4	NM_024582	exon9	c.T11008C	p.S3670P	.	.	51	5	43	0	.	108
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126241701	126241701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAT4	NM_024582	exon1	c.G4135T	p.D1379Y	.	.	93	21	97	0	.	108
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	157516904	157516904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FCRL5	NM_031281	exon3	c.G136A	p.G46R	.	.	87	5	51	0	.	156
FCRL6	343413	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159778188	159778188	+	Silent	SNP	A	A	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FCRL6	NM_001004310	exon3	c.A273C	p.P91P	.	.	312	139	300	2	.	93
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	1	152279556	152279556	+	Silent	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FLG	NM_002016	exon3	c.C7806A	p.G2602G	.	.	257	61	202	0	.	106
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535273	169535273	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FOXI1	NM_012188	exon2	c.G795A	p.E265E	.	.	161	19	110	0	.	229
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79158773	79158773	+	Splice_Site	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FRAS1	NM_001166133	exon3	c.216+2T>C	.	.	.	42	7	52	0	.	68
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120182071	120182071	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GLUD2	NM_012084	exon1	c.C533G	p.P178R	.	.	46	27	34	0	.	131
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64055851	64055851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GPR137	NM_001170726	exon7	c.G997A	p.V333I	.	.	31	7	50	0	.	68
GPR87	53836	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151012420	151012420	+	Missense_Mutation	SNP	G	G	A	rs35521104	byfrequency	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GPR87	NM_023915	exon3	c.C614T	p.T205M	.	.	118	28	114	0	T|0.001;G|0.728;C|0.268;A|0.003	153
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89979611	89979611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GPR98	NM_032119	exon28	c.C5873T	p.S1958F	.	.	110	39	103	0	.	103
GSR	2936	hgsc.bcm.edu	37	8	30585092	30585092	+	Silent	SNP	A	A	G	rs2280855	bycluster;byfrequency;by1000genomes	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	GSR,NS,NS,0	GSR	NM_001195103	exon1	c.T261C	p.G87G	.	.	14	12	11	2	A|0.925;G|0.075	94
IFNA10	3446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21206860	21206860	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	IFNA10	NM_002171	exon1	c.C237T	p.V79V	.	.	154	14	151	0	.	90
IRF2BPL	64207	bcgsc.ca	37	14	77491961	77491961	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	IRF2BPL	NM_024496	exon1	c.G2175A	p.T725T	.	.	68	5	67	0	.	90
KHDC1L	100129128	broad.mit.edu;bcgsc.ca	37	6	73935081	73935081	+	Silent	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KHDC1L	NM_001126063	exon1	c.C51A	p.P17P	.	.	86	27	81	0	.	1
KHDC1L	100129128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73935082	73935082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KHDC1L	NM_001126063	exon1	c.C50A	p.P17H	.	.	86	27	82	0	.	1
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	138619874	138619874	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KIAA1244	NM_020340	exon22	c.C3780T	p.F1260F	.	.	95	8	72	0	.	228
KIF11	3832	broad.mit.edu;bcgsc.ca	37	10	94376541	94376541	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KIF11	NM_004523	exon9	c.G1080A	p.L360L	.	.	60	5	49	0	.	227
KRTAP5-7	440050	hgsc.bcm.edu	37	11	71238737	71238737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KRTAP5-7	NM_001012503	exon1	c.T391A	p.C131S	.	.	67	5	83	0	.	68
LCE1E	353135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152760020	152760020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCE1E	NM_178353	exon2	c.A245G	p.H82R	.	.	176	82	142	1	.	90
LCMT2	9836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43621087	43621087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCMT2	NM_014793	exon1	c.G1601T	p.R534L	.	.	36	8	22	0	.	90
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169689689	169689689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCP2	NM_005565	exon13	c.A876C	p.E292D	.	.	152	52	119	0	.	23
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44893693	44893693	+	Splice_Site	SNP	T	T	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LDOC1L	.	.	.	.	.	.	48	7	38	0	.	69
LHFPL5	222662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35773531	35773531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LHFPL5	NM_182548	exon1	c.G84A	p.M28I	.	.	136	43	95	0	.	91
LOC100132247	0	broad.mit.edu	37	16	22545897	22545897	+	Missense_Mutation	SNP	G	G	T	rs143579045		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_001135865	exon7	c.G1593T	p.K531N	.	.	51	5	60	1	.	.
LOC727924	0	bcgsc.ca	37	15	22298066	22298066	+	RNA	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	.	.	.	136	24	135	0	.	.
LRRC37A4P	55073	broad.mit.edu;ucsc.edu	37	17	43586019	43586019	+	RNA	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	.	.	.	62	28	63	0	.	.
LRSAM1	90678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	130242226	130242226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LRSAM1	NM_001005373	exon14	c.C1012T	p.R338W	.	.	144	12	166	0	.	90
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	84118684	84118684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MBTPS1	NM_003791	exon10	c.G1190C	p.G397A	.	.	123	11	200	0	.	92
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41075734	41075734	+	Silent	SNP	G	G	T	rs201514957		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MCHR1	NM_005297	exon1	c.G285T	p.S95S	.	.	63	21	65	0	.	90
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190922105	190922105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MSTN	NM_005259	exon3	c.C1007G	p.A336G	.	.	79	18	55	0	.	650
MTMR9	66036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11167038	11167038	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MTMR9	NM_015458	exon6	c.A812T	p.Y271F	.	.	44	15	45	0	.	226
MUC2	4583	mdanderson.org	37	11	1092978	1092978	+	Silent	SNP	C	C	T	rs192998922		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MUC2	NM_002457	exon30	c.C4797T	p.T1599T	.	.	24	6	24	0	.	90
MUC4	4585	broad.mit.edu	37	3	195505863	195505863	+	Silent	SNP	G	G	A	rs113561118		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MUC4	NM_018406	exon2	c.C12588T	p.T4196T	.	.	120	6	104	0	.	90
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	3239233	3239233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MXRA5	NM_015419	exon5	c.C4493A	p.T1498K	.	.	106	5	75	0	.	136
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52652277	52652277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MYO5A	NM_000259	exon25	c.A3311G	p.H1104R	.	.	51	13	54	0	.	93
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3134722	3134722	+	Silent	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MYOM1	NM_003803	exon16	c.G2310T	p.G770G	.	.	196	86	90	0	.	94
NBPF10	100132406	broad.mit.edu	37	1	145323656	145323656	+	Missense_Mutation	SNP	A	A	T	rs75252120	byfrequency	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_001039703	exon27	c.A3493T	p.I1165F	.	.	46	4	46	0	A|0.625;T|0.375	.
NBPF3	84224	broad.mit.edu	37	1	21807427	21807427	+	Silent	SNP	G	G	T	rs1846852	bycluster;byfrequency	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NBPF3	NM_032264	exon12	c.C1386T	p.T462T	.	.	121	4	113	1	G|0.920;T|0.080	92
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134027961	134027961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NCAPD3	NM_015261	exon31	c.C4036T	p.P1346S	.	.	42	12	37	0	.	229
NCAPH	23397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97017638	97017638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NCAPH	NM_015341	exon7	c.A790G	p.T264A	.	.	74	19	72	0	.	228
NEAT1	283131	ucsc.edu	37	11	65190337	65190337	+	RNA	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	.	.	.	14	9	17	1	.	.
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	236193033	236193033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NID1	NM_002508	exon7	c.C1555T	p.Q519X	.	.	61	26	75	0	.	154
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7063785	7063785	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NLRP14	NM_176822	exon4	c.A528G	p.P176P	.	.	100	24	125	0	.	295
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115349517	115349517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NRAP	NM_001261463	exon41	c.G4996A	p.G1666S	.	.	64	7	44	0	.	522
NRP2	8828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	206581088	206581088	+	Silent	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NRP2	NM_201279	exon3	c.C423A	p.I141I	.	.	54	16	66	0	.	93
NSUN5P1	155400	broad.mit.edu	37	7	75044982	75044982	+	RNA	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NSUN5P1	.	.	.	.	.	.	145	3	139	0	.	22
NUBPL	80224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32030678	32030678	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NUBPL	NM_025152	exon1	c.T33C	p.G11G	.	.	31	6	41	0	.	226
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51411561	51411561	+	Silent	SNP	G	G	A	rs5011060		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR4A5	NM_001005272	exon1	c.C835T	p.L279L	.	.	81	15	88	0	.	92
OR4K17	390436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20585954	20585954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR4K17	NM_001004715	exon1	c.C389A	p.T130N	.	.	92	18	85	0	.	71
OR8B4	283162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124294034	124294034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR8B4	NM_001005196	exon1	c.T734A	p.I245N	.	.	55	13	68	1	.	69
PALM	5064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	746557	746557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PALM	NM_002579	exon9	c.A907G	p.M303V	.	.	55	22	83	0	.	68
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138450819	138450819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PCDH18	NM_019035	exon1	c.C2424G	p.I808M	.	.	71	17	74	0	.	185
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140737153	140737153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_018917	exon1	c.G2386T	p.D796Y	.	.	167	58	136	0	.	.
PDCD11	22984	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105183390	105183390	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PDCD11	NM_014976	exon19	c.A2738T	p.D913V	.	.	63	8	63	1	.	275
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209218741	209218741	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PIKFYVE	NM_015040	exon40	c.A5964G	p.L1988L	.	.	95	22	99	0	.	583
PKDREJ	10343	broad.mit.edu	37	22	46656728	46656728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PKDREJ	NM_006071	exon1	c.T2492C	p.F831S	.	.	64	4	75	0	.	156
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42298317	42298317	+	Silent	SNP	G	G	A	rs189566576	by1000genomes	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_001206670	exon4	c.C396T	p.N132N	.	.	96	31	137	0	G|0.997;A|0.003	.
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204192627	204192627	+	Missense_Mutation	SNP	C	C	A	rs201146402	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PLEKHA6	NM_014935	exon22	c.G3118T	p.A1040S	.	.	161	15	157	0	.	654
PLXNA3	55558	broad.mit.edu	37	X	153692550	153692550	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PLXNA3	NM_017514	exon8	c.C1722T	p.C574C	.	.	37	3	38	0	.	132
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74973679	74973679	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	POC5	NM_001099271	exon11	c.A1504C	p.I502L	.	.	104	29	64	0	.	45
POM121L2	94026	broad.mit.edu;bcgsc.ca	37	6	27278073	27278073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_033482	exon1	c.C1877A	p.T626N	.	.	127	7	83	0	.	.
POTEG	404785	broad.mit.edu	37	14	19553750	19553750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	POTEG	NM_001005356	exon1	c.A334G	p.S112G	.	.	989	8	1077	1	.	1
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81747020	81747020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PPFIA2	NM_001220476	exon16	c.T1872A	p.D624E	.	.	117	40	74	0	.	231
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106552731	106552731	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PRDM1	NM_001198	exon5	c.C696T	p.S232S	.	.	60	7	38	0	.	862
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	69020369	69020369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PREX2	NM_024870	exon24	c.C2741T	p.A914V	.	.	94	5	50	0	.	390
PRKDC	5591	broad.mit.edu;mdanderson.org	37	8	48794656	48794656	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PRKDC	.	.	.	.	.	.	56	10	35	0	.	1515
PTGER2	5732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52781678	52781678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PTGER2	NM_000956	exon1	c.A412G	p.I138V	.	.	56	14	72	0	.	658
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70949887	70949887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PTPRB	NM_001109754	exon19	c.T4756C	p.S1586P	.	.	76	6	81	0	.	226
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31438867	31438867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PUM1	NM_014676	exon13	c.C2048T	p.A683V	.	.	135	15	124	0	.	92
RASSF10	644943	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	13031864	13031864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_001080521	exon1	c.C741G	p.H247Q	.	.	117	32	130	0	.	.
RELA	5970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65422089	65422089	+	Silent	SNP	G	G	T	rs150493312	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RELA	NM_021975	exon11	c.C1416A	p.S472S	.	.	73	20	81	0	G|1.000;C|0.000	872
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111732714	111732714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	REV3L	NM_002912	exon3	c.A373G	p.I125V	.	.	234	56	131	0	.	294
RGPD4	285190	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	108487761	108487761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RGPD4	NM_182588	exon20	c.C3301G	p.R1101G	.	.	28	5	14	0	.	2
RNF145	153830	hgsc.bcm.edu	37	5	158630642	158630642	+	Missense_Mutation	SNP	T	T	C	rs202186112		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RNF145	NM_001199380	exon2	c.A74G	p.K25R	.	.	120	5	79	0	.	525
RTKN2	219790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	63976948	63976948	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RTKN2	NM_145307	exon9	c.949delC	p.L317fs	.	.	151	39	174	0	.	68
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33825515	33825515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RYR3	NM_001243996	exon5	c.C358A	p.L120I	.	.	31	7	26	0	.	520
SIK3	23387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116728796	116728796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SIK3	NM_025164	exon20	c.C3067T	p.H1023Y	.	.	80	22	124	0	.	919
SLC22A15	55356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	116574033	116574033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLC22A15	NM_018420	exon6	c.A775C	p.S259R	.	.	100	21	112	0	.	67
SLC25A32	81034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104427069	104427069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLC25A32	NM_030780	exon1	c.G97A	p.G33S	.	.	173	102	113	0	.	91
SLC51A	200931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195953959	195953959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_152672	exon3	c.G257A	p.R86Q	.	.	51	5	43	0	.	.
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168123358	168123358	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLIT3	NM_001271946	exon28	c.C3042T	p.N1014N	.	.	74	32	68	0	.	95
SNX15	29907	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64802558	64802558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SNX15	NM_147777	exon5	c.G400T	p.V134L	.	.	109	9	140	0	.	227
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	104157269	104157269	+	Splice_Site	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	STAB2	NM_017564	exon68	c.7489-1G>C	.	.	.	75	21	69	0	.	104
STXBP4	252983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	53158439	53158439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	STXBP4	NM_178509	exon16	c.A1384G	p.T462A	.	.	131	47	105	0	.	91
SUZ12P1	440423	broad.mit.edu	37	17	29097002	29097002	+	RNA	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	.	.	.	147	5	74	1	.	.
TAMM41	132001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	11858718	11858718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_138807	exon5	c.T656C	p.I219T	.	.	71	16	90	0	.	.
TCF23	150921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	27372096	27372096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TCF23	NM_175769	exon1	c.G95A	p.R32K	.	.	109	6	98	0	.	90
TGOLN2	10618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85554158	85554158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TGOLN2	NM_001206841	exon2	c.G697A	p.D233N	.	.	58	7	78	0	.	22
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129569203	129569203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TMEM132D	NM_133448	exon6	c.G1488T	p.M496I	.	.	95	19	109	0	.	106
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.G824A	p.C275Y	.	.	52	15	84	0	.	70225
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234875362	234875362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TRPM8	NM_024080	exon15	c.C1988T	p.A663V	.	.	73	23	47	0	.	94
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179427137	179427137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TTN	NM_001267550	exon326	c.G83722A	p.E27908K	.	.	64	17	33	0	.	636
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70504723	70504723	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	UGT2A1	NM_001252274	exon3	c.G1239A	p.Q413Q	.	.	196	22	160	0	.	92
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215808006	215808006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	USH2A	NM_206933	exon70	c.G15092T	p.R5031L	.	.	155	18	94	0	.	115
USP32	84669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58260713	58260713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	USP32	NM_032582	exon31	c.G3936T	p.L1312F	.	.	161	84	111	0	.	704
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79820239	79820239	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	VPS13A	NM_001018038	exon4	c.A198G	p.K66K	.	.	235	56	213	0	.	161
WDR96	80217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105932273	105932273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	WDR96	NM_025145	exon20	c.A2481C	p.E827D	.	.	40	11	45	0	.	95
ZC2HC1A	51101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	79598833	79598833	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_016010	exon4	c.T342C	p.S114S	.	.	270	37	127	0	.	.
ZNF683	257101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26694244	26694244	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_173574	exon3	c.T159C	p.H53H	.	.	81	19	101	0	.	.
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23545412	23545412	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ZNF91	NM_003430	exon4	c.A369G	p.R123R	.	.	39	4	40	0	.	90
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47864862	47864862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ZNFX1	NM_021035	exon14	c.A4699G	p.M1567V	.	.	72	35	85	0	.	24
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51233078	51233079	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	p.FL527LM	.	.	.	.	.	.	.	
