Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AACS	65985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125561142	125561142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AACS	NM_023928	exon3	c.G343T	p.A115S	.	.	78	31	60	0	.	92
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48319312	48319312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ABCA13	NM_152701	exon18	c.A8521G	p.T2841A	.	.	154	57	112	0	.	521
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95858910	95858910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ABCC4	NM_005845	exon8	c.T1037A	p.I346N	.	.	72	28	57	0	.	515
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131298318	131298318	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ACSL6	NM_001009185	exon18	c.G1767A	p.Q589Q	.	.	155	8	122	0	.	229
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178541106	178541106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ADAMTS2	NM_014244	exon22	c.G3398T	p.R1133L	.	.	241	111	192	0	.	228
AHNAK2	113146	broad.mit.edu	37	14	105420327	105420327	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AHNAK2	NM_138420	exon7	c.C1461T	p.H487H	.	.	270	7	195	0	.	47
ANKHD1	54882	broad.mit.edu	37	5	139781730	139781730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ANKHD1	NM_017978	exon1	c.G178A	p.G60S	.	.	118	4	68	0	.	185
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83330629	83330629	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AP3B2	NM_004644	exon24	c.G2907A	p.G969G	.	.	108	50	87	0	.	94
ARF5	381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127230141	127230141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARF5	NM_001662	exon4	c.A280G	p.S94G	.	.	48	17	33	0	.	228
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36273524	36273524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARHGAP33	NM_052948	exon14	c.A1256G	p.E419G	.	.	53	20	38	0	.	229
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80873588	80873588	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARNT2	NM_014862	exon17	c.A1761T	p.P587P	.	.	193	83	161	0	.	175
ASPHD1	253982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29912699	29912699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ASPHD1	NM_181718	exon1	c.C407A	p.P136H	.	.	35	16	31	0	.	68
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105248313	105248313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ATXN7L1	NM_020725	exon12	c.A2572G	p.R858G	.	.	220	73	150	0	.	90
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	69583171	69583171	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AUTS2	NM_001127231	exon3	c.A576T	p.G192G	.	.	194	62	158	0	.	92
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	165548695	165548695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BCHE	NM_000055	exon2	c.G127A	p.G43R	.	.	216	26	168	0	.	94
BID	637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18256445	18256445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BID	NM_197966	exon1	c.G11A	p.G4D	.	.	31	24	72	0	.	1083
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32842852	32842852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BIRC6	NM_016252	exon74	c.C14455A	p.P4819T	.	.	85	30	51	0	.	233
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50530973	50530973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C10orf71	NM_001135196	exon3	c.T383C	p.V128A	.	.	89	36	54	0	.	90
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103783452	103783452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C10orf76	NM_024541	exon7	c.A562T	p.I188L	.	.	207	52	159	0	.	90
C2orf68	388969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85836186	85836186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C2orf68	NM_001013649	exon4	c.A383G	p.D128G	.	.	93	35	71	0	.	90
CACNA1G	8913	bcgsc.ca	37	17	48653551	48653551	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CACNA1G	NM_001256360	exon8	c.1788delC	p.S596fs	.	.	110	51	78	1	.	67
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	57363935	57363935	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CCBE1	NM_133459	exon2	c.C138T	p.I46I	.	.	115	34	113	0	.	93
CCT7	10574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73479859	73479859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CCT7	NM_006429	exon12	c.A1502G	p.N501S	.	.	198	83	119	0	.	90
CDH10	1008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	24487960	24487960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CDH10	NM_006727	exon12	c.G2179A	p.A727T	.	.	114	14	88	0	.	253
CEBPA	1050	hgsc.bcm.edu	37	19	33792919	33792919	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	CEBPA,NS,haematopoietic_neoplasm,0	CEBPA	NM_004364	exon1	c.G402A	p.A134A	.	.	14	9	4	1	.	7558
CERS5	91012	bcgsc.ca	37	12	50560978	50560978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_147190	exon1	c.C103G	p.P35A	.	.	90	5	62	0	.	.
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	57730244	57730244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CGNL1	NM_001252335	exon3	c.G47T	p.G16V	.	.	47	20	23	0	.	100
CHIT1	1118	bcgsc.ca	37	1	203186947	203186947	+	Missense_Mutation	SNP	G	G	C	rs201682373	byfrequency	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CHIT1	NM_003465	exon10	c.C1076G	p.A359G	.	.	49	9	27	0	G|0.988;C|0.012	90
CLK3	1198	hgsc.bcm.edu;bcgsc.ca	37	15	74919878	74919878	+	Splice_Site	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CLK3	NM_003992	exon9	c.913-2A>G	.	.	.	105	37	83	0	.	358
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74919883	74919895	+	Frame_Shift_Del	DEL	TGTGAGGAGAAGT	TGTGAGGAGAAGT	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	TGTGAGGAGAAGT	TGTGAGGAGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CLK3	NM_001130028	exon9	c.1360_1372del	p.454_458del	.	.	113	38	84	0	.	358
CNKSR1	10256	broad.mit.edu;bcgsc.ca	37	1	26514778	26514778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CNKSR1	NM_006314	exon17	c.C1508T	p.A503V	.	.	87	6	39	0	.	846
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177673419	177673419	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	COL23A1	NM_173465	exon23	c.G1332T	p.S444S	.	.	87	35	60	0	.	91
COL27A1	85301	broad.mit.edu;bcgsc.ca	37	9	116931485	116931485	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	COL27A1	NM_032888	exon3	c.1650delC	p.S550fs	.	.	36	20	37	0	.	94
CRHBP	1393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76249897	76249897	+	Silent	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CRHBP	NM_001882	exon3	c.C219G	p.T73T	.	.	99	35	74	0	.	90
CRIP2	1397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105945934	105945934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CRIP2	NM_001270837	exon8	c.G793T	p.G265C	.	.	79	34	60	0	.	226
CYP21A2	1589	broad.mit.edu;ucsc.edu	37	6	31975055	31975055	+	RNA	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CYP21A2	.	.	.	.	.	.	119	52	82	0	.	68
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41386034	41386034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CYP2A7	NM_000764	exon4	c.C609A	p.S203R	.	.	108	46	74	0	.	93
DDHD1	80821	broad.mit.edu	37	14	53513615	53513615	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	DDHD1	NM_001160148	exon13	c.C2574T	p.S858S	.	.	355	6	291	1	.	92
DHX57	90957	broad.mit.edu	37	2	39088561	39088561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	DHX57	NM_198963	exon5	c.G991C	p.V331L	.	.	118	4	91	0	.	228
DMD	1756	broad.mit.edu	37	X	31200869	31200869	+	Silent	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	DMD	NM_004006	exon68	c.A9960G	p.P3320P	.	.	145	5	112	0	.	265
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212576873	212576873	+	Missense_Mutation	SNP	C	C	G	rs149272231	byfrequency;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ERBB4	NM_001042599	exon9	c.G1026C	p.L342F	.	.	140	73	134	0	C|1.000;T|0.000	1461
FAM186A	121006	broad.mit.edu	37	12	50746424	50746424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	FAM186A	NM_001145475	exon4	c.G4191C	p.M1397I	.	.	137	7	104	1	.	68
FERD3L	222894	broad.mit.edu;mdanderson.org	37	7	19184881	19184881	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	FERD3L	NM_152898	exon1	c.C105A	p.P35P	.	.	27	6	26	0	.	153
GABPB1	2553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50596296	50596296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GABPB1	NM_016654	exon3	c.A143G	p.Y48C	.	.	121	44	87	0	.	153
GCN1L1	10985	hgsc.bcm.edu	37	12	120589170	120589174	+	Frame_Shift_Del	DEL	AAGCA	AAGCA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AAGCA	AAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4084_4088del	p.1362_1363del	.	.	72	0	65	0	.	94
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120589170	120589171	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4087_4088del	p.1363_1363del	.	.	72	22	65	0	.	94
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120589173	120589174	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4084_4085del	p.1362_1362del	.	.	66	22	63	0	.	94
GOLGA6A	342096	ucsc.edu	37	15	74368297	74368297	+	Missense_Mutation	SNP	C	C	G	rs58551153	bycluster	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GOLGA6A	NM_001038640	exon8	c.G594C	p.Q198H	.	.	21	4	13	0	C|0.500;G|0.500	44
GPHB5	122876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	63784460	63784460	+	RNA	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GPHB5	.	.	.	.	.	.	108	45	77	0	.	67
GREB1	9687	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11696806	11696806	+	Silent	SNP	C	C	T	rs16857629	byfrequency	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GREB1	NM_148903	exon2	c.C66T	p.I22I	.	.	126	35	75	0	C|0.958;T|0.042	91
GRM3	2913	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	86468656	86468656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GRM3	NM_000840	exon4	c.C1826A	p.A609E	.	.	79	24	46	1	.	528
GTF3C3	9330	broad.mit.edu	37	2	197657782	197657782	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GTF3C3	NM_001206774	exon3	c.G309A	p.E103E	.	.	277	9	272	1	.	97
HAMP	57817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35775694	35775694	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HAMP	NM_021175	exon2	c.G93A	p.T31T	.	.	113	41	74	0	.	90
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240158361	240158361	+	Splice_Site	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HDAC4	NM_006037	exon4	c.23-1G>C	.	.	.	169	86	144	0	.	291
HEPACAM2	253012	hgsc.bcm.edu;broad.mit.edu	37	7	92826814	92826814	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HEPACAM2	NM_001039372	exon5	c.1122delA	p.K374fs	.	.	275	17	218	0	.	157
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	63988457	63988457	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HERC1	NM_003922	exon27	c.A4987T	p.R1663X	.	.	147	58	112	0	.	666
HES1	3280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193854425	193854425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HES1	NM_005524	exon2	c.A128T	p.E43V	.	.	190	87	137	0	.	659
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34329977	34329977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HMGB4	NM_145205	exon2	c.C185A	p.A62D	.	.	117	18	88	0	.	90
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121416684	121416684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HNF1A	NM_000545	exon1	c.T113C	p.L38P	.	.	127	44	112	0	.	1745
IGFL4	444882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46543655	46543655	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	IGFL4	NM_001002923	exon3	c.C90T	p.C30C	.	.	101	45	65	0	.	90
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	121712300	121712300	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ILDR1	NM_001199799	exon7	c.1296delG	p.W432fs	.	.	109	47	66	0	.	91
IRF2BP1	26145	broad.mit.edu	37	19	46388671	46388671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	IRF2BP1	NM_015649	exon1	c.T362C	p.L121P	.	.	70	5	46	0	.	90
IRS1	3667	hgsc.bcm.edu	37	2	227661395	227661396	+	In_Frame_Ins	INS	-	-	TGC	rs138975702	by1000genomes	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	IRS1	NM_005544	exon1	c.2060_2061insGCA	p.N687delinsSN	.	.	79	28	76	0	.	1272
KRT1	3848	hgsc.bcm.edu	37	12	53069229	53069229	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	KRT1	NM_006121	exon9	c.C1683T	p.S561S	.	.	35	4	21	0	.	92
KRT1	3848	hgsc.bcm.edu	37	12	53069235	53069235	+	Silent	SNP	G	G	A	rs11170232	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	KRT1	NM_006121	exon9	c.C1677T	p.Y559Y	.	.	30	23	19	0	G|0.500;A|0.500	92
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	KRT4	NM_002272	exon1	c.T240C	p.F80F	.	.	74	14	50	0	A|1.000;|0.000	96
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	KRT4	NM_002272	exon1	c.C237T	p.G79G	.	.	73	13	50	0	.	96
KTN1	3895	ucsc.edu;bcgsc.ca	37	14	56119582	56119582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	KTN1	NM_004986	exon26	c.A2618T	p.E873V	.	.	416	163	317	3	.	1147
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107704317	107704317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LAMB4	NM_007356	exon22	c.T2950C	p.C984R	.	.	242	92	183	0	.	140
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96360250	96360250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LNPEP	NM_005575	exon15	c.G2587A	p.V863M	.	.	74	8	56	0	.	229
LOC388152	0	broad.mit.edu	37	15	84868602	84868602	+	RNA	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	.	.	.	7	3	9	0	.	.
LOC96610	0	broad.mit.edu	37	22	22664115	22664115	+	RNA	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	.	.	.	41	8	12	0	.	.
LRRC55	219527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56949612	56949612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LRRC55	NM_001005210	exon1	c.C245T	p.P82L	.	.	90	36	60	0	.	90
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33413881	33413881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LTBP1	NM_206943	exon7	c.A1664G	p.Q555R	.	.	103	35	84	0	.	230
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20198542	20198542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MACC1	NM_182762	exon5	c.A1442G	p.H481R	.	.	121	54	98	0	.	93
MAPK14	1432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36075327	36075327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MAPK14	NM_139012	exon11	c.G937A	p.D313N	.	.	128	50	80	0	.	1444
MAPK6	5597	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52357167	52357167	+	Silent	SNP	A	A	T	rs201094277		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MAPK6	NM_002748	exon6	c.A2136T	p.T712T	.	.	180	67	145	1	A|0.999;T|0.001	1403
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60088411	60088411	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MED13	NM_005121	exon9	c.C1467T	p.D489D	.	.	351	34	287	0	.	136
MFN1	55669	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179093112	179093112	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MFN1	NM_033540	exon10	c.G1080T	p.L360L	.	.	229	72	187	1	.	155
MLLT10	8028	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21875225	21875225	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MLLT10	NM_001195626	exon3	c.A243T	p.R81S	.	.	190	39	155	4	.	658
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73009991	73009991	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MLXIPL	NM_032951	exon15	c.G2286T	p.T762T	.	.	126	50	90	0	.	91
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102816423	102816423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MMP13	NM_002427	exon9	c.G1267C	p.D423H	.	.	76	23	67	0	.	229
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102816459	102816459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MMP13	NM_002427	exon9	c.A1231G	p.I411V	.	.	74	23	61	0	.	229
MSH4	4438	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	76262910	76262910	+	Silent	SNP	T	T	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MSH4	NM_002440	exon1	c.T240G	p.A80A	.	.	36	12	28	0	.	660
MUC4	4585	hgsc.bcm.edu	37	3	195518119	195518119	+	Missense_Mutation	SNP	A	A	T	rs201789760		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MUC4	NM_018406	exon2	c.T332A	p.M111K	.	.	218	25	128	0	.	90
MVP	9961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29848051	29848051	+	Silent	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MVP	NM_017458	exon7	c.G681C	p.L227L	.	.	43	10	27	0	.	93
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26422950	26422950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MYO18B	NM_032608	exon43	c.C7010G	p.T2337R	.	.	34	22	23	0	.	142
NAT8	9027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73868638	73868638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NAT8	NM_003960	exon2	c.C118A	p.P40T	.	.	86	36	68	0	.	91
NCOA3	8202	hgsc.bcm.edu	37	20	46279833	46279833	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NCOA3	NM_181659	exon20	c.G3759A	p.Q1253Q	.	.	101	5	77	0	.	229
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33329069	33329069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NCOA6	NM_014071	exon11	c.C4991A	p.S1664Y	.	.	113	31	82	0	.	292
ND2	0	bcgsc.ca	37	MT	5329	5329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	ENST00000361453	exon1	c.T860C	p.L287P	.	.	53	4	43	0	.	.
ND6	0	broad.mit.edu	37	MT	14438	14438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	ENST00000361681	exon1	c.C236T	p.P79L	.	.	63	4	45	0	.	.
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5604082	5604082	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NTF3	NM_001102654	exon2	c.C741T	p.L247L	.	.	55	34	76	0	.	205
OLA1	29789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175111522	175111522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OLA1	NM_013341	exon2	c.G22A	p.D8N	.	.	288	30	138	0	.	132
OLIG1	116448	mdanderson.org	37	21	34442871	34442871	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OLIG1	NM_138983	exon1	c.C319A	p.R107R	.	.	15	3	19	0	.	446
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45799382	45799382	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OR13A1	NM_001004297	exon4	c.C489A	p.A163A	.	.	57	15	37	0	.	68
OR5L2	26338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55594866	55594866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OR5L2	NM_001004739	exon1	c.C172A	p.P58T	.	.	269	109	252	0	.	69
OTOL1	131149	broad.mit.edu	37	3	161221009	161221009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_001080440	exon4	c.T713G	p.M238R	.	.	76	12	50	4	.	.
PCDH11X	27328	ucsc.edu;bcgsc.ca	37	X	91134152	91134152	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCDH11X	NM_001168363	exon2	c.C2913A	p.T971T	.	.	182	147	144	3	.	193
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55583049	55583049	+	Silent	SNP	T	T	C	rs141623033		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCDH15	NM_001142763	exon35	c.A4458G	p.Q1486Q	.	.	130	54	115	0	T|0.999;C|0.000	193
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140203515	140203515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCDHA5	NM_018908	exon1	c.G2155A	p.A719T	.	.	135	16	92	0	.	137
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82544719	82544719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PCLO	NM_014510	exon7	c.C12583A	p.L4195I	.	.	185	66	137	1	.	29
PDZD9	255762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21995863	21995863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PDZD9	NM_173806	exon3	c.C340T	p.H114Y	.	.	247	56	261	0	.	91
PIP	5304	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	142836665	142836665	+	Missense_Mutation	SNP	C	C	T	rs148216903	byfrequency;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PIP	NM_002652	exon4	c.C371T	p.P124L	.	.	240	18	158	0	C|0.997;G|0.003	91
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123498529	123498529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PITPNM2	NM_020845	exon3	c.C139T	p.P47S	.	.	141	64	115	0	.	228
PRIM2	5558	bcgsc.ca	37	6	57393112	57393112	+	RNA	SNP	T	T	C	rs11964288	byfrequency	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRIM2	.	.	.	.	.	.	55	5	39	0	T|0.985;C|0.015	227
PRKX	5613	hgsc.bcm.edu	37	X	3533930	3533930	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.877delG	p.G293fs	.	.	144	0	111	0	.	540
PRKX	5613	hgsc.bcm.edu;bcgsc.ca	37	X	3533926	3533926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.C881A	p.A294E	.	.	141	105	112	0	.	540
PRKX	5613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	3533925	3533925	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.882delG	p.A294fs	.	.	142	102	114	0	.	540
PROSER1	80209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39586338	39586338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_025138	exon12	c.C2594A	p.S865Y	.	.	191	74	144	0	.	.
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40902988	40902988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRX	NM_181882	exon7	c.C1271T	p.S424F	.	.	139	52	85	0	.	92
PSTPIP1	9051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77310567	77310567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PSTPIP1	NM_003978	exon2	c.A115T	p.M39L	.	.	77	31	53	0	.	23
PTCHD3	374308	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27687437	27687437	+	Missense_Mutation	SNP	C	C	A	rs139600575	byfrequency	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTCHD3	NM_001034842	exon4	c.G2090T	p.W697L	.	.	212	76	181	1	C|0.999;A|0.001	94
PTPRF	5792	broad.mit.edu	37	1	44071948	44071948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTPRF	NM_002840	exon20	c.G3521A	p.R1174Q	.	.	59	4	49	0	.	232
PTPRN2	5799	bcgsc.ca;mdanderson.org	37	7	157449210	157449210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTPRN2	NM_002847	exon14	c.C2035A	p.P679T	.	.	74	27	35	1	.	295
PTPRO	5800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15739913	15739913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTPRO	NM_030667	exon24	c.G3338C	p.S1113T	.	.	91	25	120	0	.	271
RAB1B	81876	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66039304	66039304	+	Silent	SNP	A	A	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RAB1B	NM_030981	exon2	c.A51C	p.S17S	.	.	131	52	95	1	.	227
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51661661	51661661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RAD54L2	NM_015106	exon3	c.C232G	p.Q78E	.	.	113	34	93	0	.	93
RELN	5649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	103198496	103198496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RELN	NM_173054	exon37	c.5530delG	p.E1844fs	.	.	285	105	192	0	.	574
RNR2	6053	broad.mit.edu	37	MT	2871	2871	+	RNA	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	.	.	.	33	3	28	0	.	.
SBF1P1	100133234	ucsc.edu	37	8	56367604	56367604	+	RNA	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	.	.	.	14	5	10	0	.	.
SCRT1	83482	broad.mit.edu;mdanderson.org	37	8	145557361	145557361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_031309	exon2	c.C533A	p.A178E	.	.	26	6	21	0	.	.
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83606504	83606504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SEMA3A	NM_006080	exon15	c.G1661T	p.R554I	.	.	345	133	324	0	.	156
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38347895	38347895	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC22A14	NM_004803	exon1	c.C378T	p.G126G	.	.	114	24	122	0	.	90
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19576992	19576992	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC24A2	NM_020344	exon5	c.C1158A	p.L386L	.	.	104	64	118	0	.	517
SLC24A3	57419	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19673903	19673903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC24A3	NM_020689	exon13	c.C1325T	p.S442L	.	.	120	51	97	1	.	91
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66475653	66475653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SPTBN2	NM_006946	exon11	c.C1309T	p.R437W	.	.	146	34	103	0	.	155
SRPK1	6732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35806150	35806150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SRPK1	NM_003137	exon15	c.G1747T	p.A583S	.	.	98	38	64	0	.	359
SUZ12	23512	broad.mit.edu	37	17	30267331	30267331	+	Nonsense_Mutation	SNP	C	C	T	rs2627175		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SUZ12	NM_015355	exon2	c.C301T	p.R101X	.	.	737	6	620	1	.	658
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	30000996	30000997	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TJP1	NM_003257	exon25	c.4616_4617del	p.1539_1539del	.	.	288	107	189	0	.	95
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77714715	77714715	+	Missense_Mutation	SNP	G	G	A	rs180758756	by1000genomes	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_020431	exon19	c.G1627A	p.A543T	.	.	106	40	93	0	G|0.999;A|0.000	.
TOP2A	7153	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38546362	38546362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TOP2A	NM_001067	exon34	c.C4322A	p.T1441N	.	.	248	107	211	1	.	655
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578290	7578290	+	Splice_Site	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	TP53,NS,haematopoietic_neoplasm,0	TP53	NM_000546	exon7	c.560-1G>A	.	.	.	71	41	87	0	.	70225
TRA2B	6434	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185641706	185641706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TRA2B	NM_004593	exon4	c.C400A	p.L134I	.	.	142	52	91	0	.	92
TRIM71	131405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32932669	32932669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TRIM71	NM_001039111	exon4	c.G1973A	p.G658D	.	.	51	17	28	0	.	92
TTC19	54902	bcgsc.ca	37	17	15929937	15929937	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TTC19	NM_017775	exon9	c.A915T	p.A305A	.	.	82	57	87	2	.	91
TTC19	54902	bcgsc.ca	37	17	15929940	15929940	+	Silent	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TTC19	NM_017775	exon9	c.A918G	p.S306S	.	.	79	56	89	2	.	91
TUBBP5	643224	broad.mit.edu	37	9	141070897	141070897	+	RNA	SNP	G	G	A	rs28414745		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	.	.	.	34	5	40	1	G|0.938;A|0.062	.
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19513738	19513738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	UBR4	NM_020765	exon13	c.A1552T	p.I518L	.	.	82	19	60	0	.	612
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76814798	76814798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	USP36	NM_025090	exon10	c.C974G	p.T325S	.	.	162	55	138	0	.	659
WBP1	23559	broad.mit.edu	37	2	74687581	74687581	+	Missense_Mutation	SNP	A	A	C	rs61735753	byfrequency;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	WBP1	NM_012477	exon4	c.A583C	p.T195P	.	.	180	30	83	14	A|0.972;T|0.028	90
WDR17	116966	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177093603	177093603	+	Silent	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	WDR17	NM_170710	exon26	c.A3297G	p.V1099V	.	.	211	21	271	1	.	95
ZFP36L1	677	broad.mit.edu;bcgsc.ca	37	14	69256313	69256313	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ZFP36L1	NM_001244701	exon3	c.C1161T	p.S387S	.	.	94	43	51	1	.	91
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88847522	88847522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ZNF804B	NM_181646	exon2	c.C162A	p.N54K	.	.	114	41	83	0	.	101
UNC13C	440279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54307530	54307531	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AG	AG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	p.V811L	.	.	.	.	.	.	.	
RP11-618P13.1	0	bcgsc.ca	37	17	52031715	52031716	+	RNA	DNP	GG	GG	TT	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	.	.	.	.	.	.	.	.	
BIN2P2	644601	bcgsc.ca	37	5	75206544	75206545	+	RNA	DNP	CT	CT	AA	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	.	.	.	.	.	.	.	.	.	.	.	
