Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20738174	20738174	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ABCB5	NM_001163941	exon17	c.2154+1G>A	.	.	.	65	16	81	0	.	158
ACAN	176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89401573	89401573	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ACAN	NM_001135	exon12	c.G5757A	p.S1919S	.	.	123	64	90	0	.	25
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127797193	127797193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ADAM12	NM_021641	exon8	c.G719A	p.R240Q	.	.	112	12	122	0	.	716
ADAM21P1	145241	ucsc.edu	37	14	70714087	70714087	+	RNA	SNP	T	T	G	rs79122905		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	.	.	.	.	.	.	69	11	94	8	.	.
ADAM28	10863	ucsc.edu	37	8	24168948	24168948	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ADAM28	NM_014265	exon5	c.A381G	p.L127L	.	.	34	4	50	0	.	228
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178562943	178562943	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	ADAMTS2,NS,carcinoma,0	ADAMTS2	NM_014244	exon13	c.C2052T	p.D684D	.	.	94	47	108	1	.	228
ADCK3	56997	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227171267	227171267	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ADCK3	NM_020247	exon9	c.C1095A	p.A365A	.	.	96	57	92	1	.	361
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40746009	40746009	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	AKT2	NM_001626	exon7	c.C582A	p.V194V	.	.	158	123	90	0	.	978
ANKIB1	54467	ucsc.edu	37	7	91936854	91936854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ANKIB1	NM_019004	exon3	c.A370G	p.K124E	.	.	38	4	37	0	.	432
ANKRD30A	91074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37431161	37431161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ANKRD30A	NM_052997	exon7	c.A1168G	p.R390G	.	.	168	60	145	1	.	161
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36278734	36278734	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ARHGAP33	NM_052948	exon21	c.C2784T	p.I928I	.	.	638	30	225	0	.	229
ASB18	401036	broad.mit.edu;bcgsc.ca	37	2	237103519	237103519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ASB18	NM_212556	exon6	c.A1397G	p.H466R	.	.	124	7	171	0	.	227
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31319066	31319066	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ASXL3	NM_030632	exon11	c.G1698C	p.E566D	.	.	89	17	104	0	.	49
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142232443	142232443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ATR	NM_001184	exon26	c.G4541T	p.C1514F	.	.	209	65	297	0	.	1139
BCL7C	9274	bcgsc.ca	37	16	30904586	30904586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	BCL7C	NM_004765	exon2	c.G118A	p.D40N	.	.	60	5	82	0	.	227
BDNF	627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27679589	27679589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	BDNF	NM_001143810	exon3	c.G769C	p.G257R	.	.	63	18	95	0	.	514
C1orf51	148523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150255801	150255801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	C1orf51	NM_144697	exon1	c.C124A	p.H42N	.	.	191	20	162	0	.	90
C22orf34	348645	bcgsc.ca;mdanderson.org	37	22	50016813	50016813	+	RNA	SNP	A	A	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	.	.	.	.	.	.	98	26	107	0	.	.
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121981009	121981009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CASR	NM_001178065	exon4	c.G1127A	p.G376D	.	.	104	47	139	0	.	97
CASS4	57091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55012412	55012412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CASS4	NM_020356	exon2	c.G229C	p.D77H	.	.	149	55	140	1	.	25
CD226	10666	broad.mit.edu	37	18	67563080	67563080	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CD226	NM_006566	exon4	c.T584A	p.I195K	.	.	87	6	87	0	.	90
CDC73	79577	broad.mit.edu;bcgsc.ca	37	1	193094335	193094335	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CDC73	NM_024529	exon2	c.C225A	p.V75V	.	.	119	8	160	0	.	1009
CELSR3	1951	ucsc.edu	37	3	48680509	48680509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CELSR3	NM_001407	exon29	c.C8297A	p.A2766E	.	.	44	4	52	0	.	523
CERS6	253782	broad.mit.edu	37	2	169626072	169626072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_001256126	exon11	c.C1079T	p.S360L	.	.	192	7	153	0	.	.
CFLAR	8837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201994647	201994647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CFLAR	NM_001202516	exon2	c.T59C	p.M20T	.	.	121	73	122	0	.	227
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	443359	443359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CHL1	NM_006614	exon27	c.G3436A	p.D1146N	.	.	57	16	85	0	.	583
CHN2	1124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29407574	29407574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CHN2	NM_004067	exon3	c.C115T	p.R39C	.	.	37	14	32	0	.	229
CLCA2	9635	broad.mit.edu	37	1	86891071	86891071	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CLCA2	NM_006536	exon2	c.G236C	p.R79T	.	.	231	5	239	0	.	155
CNTN3	5067	ucsc.edu	37	3	74535696	74535696	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CNTN3	NM_020872	exon3	c.A269T	p.N90I	.	.	48	4	49	0	.	137
CNTNAP3B	728577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	43816717	43816717	+	Missense_Mutation	SNP	G	G	A	rs201844561	byfrequency	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_001201380	exon6	c.G823A	p.V275I	.	.	551	183	638	1	G|0.993;A|0.007	.
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101748304	101748304	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	COL15A1	NM_001855	exon3	c.C558A	p.P186P	.	.	56	23	67	1	.	96
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32133203	32133203	+	Silent	SNP	G	G	A	rs200246591	alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	COL16A1	NM_001856	exon52	c.C3330T	p.T1110T	.	.	65	17	105	0	G|0.999;T|0.000	98
COPA	1314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160264344	160264344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	COPA	NM_001098398	exon25	c.C2633T	p.A878V	.	.	234	133	212	0	.	92
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207651318	207651318	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CR2	NM_001006658	exon16	c.T2991A	p.T997T	.	.	163	40	196	0	.	232
CRTAM	56253	broad.mit.edu	37	11	122738144	122738144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CRTAM	NM_019604	exon8	c.C845T	p.A282V	.	.	95	6	140	0	.	91
CRYZL1	9946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34994363	34994363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CRYZL1	NM_145858	exon4	c.A156C	p.E52D	.	.	313	119	387	0	.	90
CTU2	348180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88781068	88781068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CTU2	NM_001012759	exon12	c.G1275C	p.E425D	.	.	79	47	132	0	.	23
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225367700	225367700	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CUL3	NM_001257198	exon10	c.A1485G	p.Q495Q	.	.	61	11	94	0	.	229
CUL7	9820	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43005507	43005507	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CUL7	NM_001168370	exon26	c.C5268T	p.T1756T	.	.	75	11	61	0	.	229
DCDC5	100506627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30915799	30915799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DCDC5	NM_020869	exon16	c.C2210A	p.T737K	.	.	78	40	106	1	.	23
DIAPH3	81624	ucsc.edu	37	13	60384964	60384964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DIAPH3	NM_001042517	exon25	c.G3121A	p.E1041K	.	.	38	4	60	0	.	516
DMGDH	29958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78320120	78320120	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DMGDH	NM_013391	exon14	c.C2224T	p.L742L	.	.	239	88	292	0	.	94
DMRTA2	63950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	50886867	50886867	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_032110	exon2	c.G342C	p.A114A	.	.	30	14	31	0	.	.
DNAH10	196385	bcgsc.ca;mdanderson.org	37	12	124409631	124409631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DNAH10	NM_207437	exon67	c.T11447C	p.V3816A	.	.	112	26	147	3	.	95
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11363512	11363512	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DOCK6	NM_020812	exon3	c.G255T	p.L85L	.	.	97	16	100	0	.	93
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63001217	63001217	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DOCK7	NM_001271999	exon29	c.G3558A	p.L1186L	.	.	120	54	126	0	.	92
DRG2	1819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18003031	18003031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DRG2	NM_001388	exon5	c.T461C	p.V154A	.	.	153	65	101	0	.	91
DSCAML1	57453	ucsc.edu	37	11	117329587	117329587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DSCAML1	NM_020693	exon19	c.C3631T	p.R1211W	.	.	37	4	55	0	.	159
DST	667	bcgsc.ca	37	6	56382362	56382362	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DST	NM_015548	exon51	c.G10317A	p.L3439L	.	.	115	18	86	1	.	523
DST	667	bcgsc.ca	37	6	56382379	56382379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DST	NM_015548	exon51	c.G10300A	p.E3434K	.	.	103	20	89	1	.	523
DST	667	bcgsc.ca;mdanderson.org	37	6	56382403	56382403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DST	NM_015548	exon51	c.G10276A	p.D3426N	.	.	98	19	81	1	.	523
DST	667	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	56382415	56382415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DST	NM_015548	exon51	c.G10264A	p.D3422N	.	.	104	21	72	1	.	523
DYTN	391475	broad.mit.edu;ucsc.edu	37	2	207559510	207559510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DYTN	NM_001093730	exon8	c.G811A	p.V271I	.	.	49	5	52	0	.	23
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18393405	18393405	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_001099407	exon13	c.C1317T	p.F439F	.	.	159	42	98	0	.	.
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12905669	12905669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ELAC2	NM_018127	exon14	c.G1226A	p.G409D	.	.	91	50	78	0	.	90
EP400	57634	ucsc.edu	37	12	132547096	132547096	+	Silent	SNP	G	G	A	rs74479394		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	EP400	NM_015409	exon47	c.G8184A	p.Q2728Q	.	.	59	9	98	2	.	520
EXOC3L2	90332	broad.mit.edu	37	19	45731516	45731516	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	EXOC3L2	NM_138568	exon3	c.C99G	p.T33T	.	.	235	8	76	0	.	91
FAM171B	165215	ucsc.edu	37	2	187559047	187559047	+	Silent	SNP	G	G	A	rs73979342		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FAM171B	NM_177454	exon1	c.G147A	p.Q49Q	.	.	71	7	64	1	G|0.500;A|0.500	141
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149696	34149696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FAM47A	NM_203408	exon1	c.C700T	p.H234Y	.	.	101	22	101	0	.	134
FAM91A2	57234	bcgsc.ca	37	1	149647484	149647484	+	RNA	SNP	G	G	A	rs60530143	alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	.	.	.	.	.	.	33	7	35	0	.	.
FREM2	341640	ucsc.edu	37	13	39264240	39264240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FREM2	NM_207361	exon1	c.A2759T	p.D920V	.	.	31	4	41	0	.	100
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48512111	48512111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FRYL	NM_015030	exon59	c.G8359A	p.D2787N	.	.	58	25	70	0	.	69
FXYD4	53828	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43870995	43870995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FXYD4	NM_001184963	exon6	c.C146A	p.A49D	.	.	128	38	96	1	.	90
GGT5	2687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24628913	24628913	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GGT5	NM_001099781	exon4	c.C474G	p.P158P	.	.	78	36	84	0	.	71
GLUD1	2746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88818994	88818994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GLUD1	NM_005271	exon10	c.T1315C	p.Y439H	.	.	141	15	165	0	.	90
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150348392	150348392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GPR50	NM_004224	exon2	c.G337T	p.V113F	.	.	193	93	223	0	.	176
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89990343	89990343	+	Silent	SNP	C	C	T	rs201767905		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GPR98	NM_032119	exon33	c.C7770T	p.S2590S	.	.	64	29	66	0	C|0.999;T|0.000	103
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123474218	123474218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GRAMD1B	NM_020716	exon8	c.G706A	p.V236M	.	.	59	11	101	0	.	69
GREB1	9687	broad.mit.edu	37	2	11716554	11716554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GREB1	NM_148903	exon5	c.T530C	p.L177P	.	.	187	7	126	0	.	91
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122598767	122598767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GRIA3	NM_000828	exon13	c.G2128A	p.E710K	.	.	233	104	317	0	.	134
GRM6	2916	ucsc.edu	37	5	178410213	178410213	+	Missense_Mutation	SNP	T	T	C	rs17078877	byfrequency	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GRM6	NM_000843	exon9	c.A2134G	p.M712V	.	.	31	5	35	0	T|0.960;C|0.040	588
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	7915180	7915180	+	Silent	SNP	C	C	A	rs200105698	alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	HAO1	NM_017545	exon2	c.G240T	p.T80T	.	.	92	17	89	0	C|0.999;G|0.001	93
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26056402	26056402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	HIST1H1C	NM_005319	exon1	c.G255C	p.K85N	.	.	127	15	87	0	.	231
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42041241	42041241	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	HIVEP3	NM_024503	exon5	c.G5181A	p.P1727P	.	.	27	15	64	0	.	157
IGF2-AS	51214	ucsc.edu	37	11	2167646	2167646	+	RNA	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	.	.	.	.	.	.	20	4	46	0	.	.
IVL	3713	ucsc.edu;bcgsc.ca	37	1	152884007	152884007	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	IVL	NM_005547	exon2	c.G1734T	p.V578V	.	.	398	78	211	2	.	93
JAM3	83700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134014848	134014848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	JAM3	NM_032801	exon5	c.C571T	p.R191C	.	.	71	22	200	0	.	91
JUND	3727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18391859	18391859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	JUND	NM_005354	exon1	c.G436A	p.D146N	.	.	44	9	16	0	.	846
KCNE4	23704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223917618	223917618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	KCNE4	NM_080671	exon2	c.C223T	p.R75C	.	.	41	32	46	0	.	91
KIAA1217	56243	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24809143	24809143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	KIAA1217	NM_019590	exon11	c.C2269T	p.L757F	.	.	121	12	101	0	.	98
KLHL36	79786	ucsc.edu	37	16	84691162	84691162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	KLHL36	NM_024731	exon3	c.A749G	p.K250R	.	.	37	4	34	0	.	92
KLK7	5650	ucsc.edu	37	19	51485620	51485620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	KLK7	NM_001243126	exon2	c.A163G	p.T55A	.	.	34	4	72	0	.	650
KRTAP4-11	653240	broad.mit.edu	37	17	39274364	39274364	+	Missense_Mutation	SNP	T	T	G	rs425784		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_033059	exon1	c.A204C	p.R68S	.	.	38	7	25	0	.	.
LCMT1	51451	bcgsc.ca	37	16	25162889	25162889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	LCMT1	NM_016309	exon5	c.T419C	p.L140P	.	.	69	5	88	1	.	22
LRCH2	57631	bcgsc.ca;mdanderson.org	37	X	114468471	114468471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	LRCH2	NM_001243963	exon1	c.C134A	p.T45N	.	.	142	43	163	4	.	131
LRIT1	26103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85994095	85994095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	LRIT1	NM_015613	exon3	c.A629G	p.Y210C	.	.	168	46	163	0	.	90
LRRC14	9684	ucsc.edu	37	8	145746437	145746437	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	LRRC14	NM_001272036	exon5	c.C1057T	p.L353L	.	.	28	4	63	0	.	90
MAP3K15	389840	ucsc.edu	37	X	19391722	19391722	+	Silent	SNP	G	G	T	rs143992275	byfrequency;alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MAP3K15	NM_001001671	exon21	c.C2865A	p.S955S	.	.	38	4	38	0	G|0.998;A|0.002	335
MAP3K5	4217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	137041704	137041704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MAP3K5	NM_005923	exon2	c.G472A	p.D158N	.	.	70	14	84	0	.	982
MAP4K1	11184	broad.mit.edu	37	19	39078446	39078446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MAP4K1	NM_001042600	exon31	c.T2408G	p.V803G	.	.	133	6	58	0	.	980
MARK2	2011	broad.mit.edu;bcgsc.ca	37	11	63662806	63662819	+	Frame_Shift_Del	DEL	AAGAGGTGAGCACT	AAGAGGTGAGCACT	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	AAGAGGTGAGCACT	AAGAGGTGAGCACT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MARK2	NM_001163296	exon2	c.230_234del	p.77_78del	.	.	62	7	124	0	.	766
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84118638	84118638	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MBTPS1	NM_003791	exon10	c.G1236A	p.G412G	.	.	153	39	206	0	.	92
MIA	8190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41281480	41281480	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MIA	NM_001202553	exon2	c.C33T	p.I11I	.	.	122	74	62	0	.	651
MIB2	142678	bcgsc.ca	37	1	1558787	1558787	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MIB2	NM_001170686	exon3	c.C300T	p.P100P	.	.	30	5	55	0	.	90
MICALL2	79778	bcgsc.ca	37	7	1479611	1479611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MICALL2	NM_182924	exon9	c.T1916C	p.V639A	.	.	83	6	97	0	.	90
MIR1256	100302155	ucsc.edu	37	X	103216826	103216826	+	RNA	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	.	.	.	.	.	.	32	4	46	0	.	.
MLL3	58508	ucsc.edu	37	7	151874892	151874892	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MLL3	NM_170606	exon38	c.A7646T	p.Q2549L	.	.	36	4	79	0	.	1398
MOCS1	4337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39895145	39895145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MOCS1	NM_005943	exon1	c.C173T	p.S58F	.	.	49	20	56	0	.	92
MROH1	727957	ucsc.edu	37	8	145223317	145223317	+	Nonsense_Mutation	SNP	G	G	T	rs192159538	alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_001099280	exon4	c.G142T	p.E48X	.	.	17	4	23	0	G|0.999;A|0.000	.
MROH6	642475	mdanderson.org	37	8	144654788	144654788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_001100878	exon1	c.G97A	p.G33R	.	.	12	3	14	0	.	.
MRPL21	219927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	68658837	68658837	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MRPL21	NM_181514	exon7	c.C580A	p.R194R	.	.	47	12	88	0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8999473	8999473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MUC16	NM_024690	exon56	c.T40702C	p.Y13568H	.	.	104	17	100	0	.	566
MUC4	4585	ucsc.edu	37	3	195515290	195515290	+	Missense_Mutation	SNP	C	C	G	rs78535324		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MUC4	NM_018406	exon2	c.G3161C	p.S1054T	.	.	35	5	44	3	.	90
MYBPC2	4606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50957538	50957538	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MYBPC2	NM_004533	exon18	c.G1926A	p.P642P	.	.	44	31	103	0	.	67
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	48586029	48586029	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MYCBPAP	NM_032133	exon1	c.C123T	p.G41G	.	.	242	39	158	0	.	230
NCAPD3	23310	ucsc.edu	37	11	134038934	134038934	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NCAPD3	NM_015261	exon25	c.C3117T	p.C1039C	.	.	30	4	68	0	.	229
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133554289	133554289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_207481	exon12	c.G821A	p.R274H	.	.	48	10	62	0	.	.
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133721442	133721442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_207481	exon8	c.G430A	p.E144K	.	.	50	32	64	0	.	.
NCKAP5L	57701	ucsc.edu	37	12	50187164	50187164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NCKAP5L	NM_001037806	exon10	c.C3311T	p.A1104V	.	.	26	4	20	0	.	68
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46268408	46268408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NCOA3	NM_181659	exon15	c.C2795G	p.P932R	.	.	161	46	102	0	.	229
NEU2	4759	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233899058	233899058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NEU2	NM_005383	exon2	c.C434T	p.A145V	.	.	45	30	81	1	.	90
NFKB2	4791	broad.mit.edu	37	10	104158605	104158605	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NFKB2	NM_002502	exon12	c.C1101T	p.Y367Y	.	.	138	5	154	0	.	522
NIN	51199	broad.mit.edu	37	14	51211022	51211022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NIN	NM_020921	exon23	c.A5126T	p.N1709I	.	.	69	5	65	0	.	229
NINL	22981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25434223	25434223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NINL	NM_025176	exon24	c.C4013G	p.A1338G	.	.	115	26	126	0	.	94
NOG	9241	broad.mit.edu;mdanderson.org	37	17	54671633	54671633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NOG	NM_005450	exon1	c.G49A	p.V17I	.	.	52	11	41	0	.	90
NOL3	8996	broad.mit.edu;ucsc.edu	37	16	67209000	67209000	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NOL3	NM_001185057	exon4	c.G660A	p.X220X	.	.	41	25	56	0	.	227
OR11H12	440153	hgsc.bcm.edu	37	14	19378493	19378493	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	OR11H12	NM_001013354	exon1	c.900delC	p.F300fs	.	.	270	19	333	0	.	24
OR11H1	81061	hgsc.bcm.edu	37	22	16448905	16448905	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	OR11H1	NM_001005239	exon1	c.900delC	p.F300fs	.	.	332	22	355	0	.	22
OR56B1	387748	broad.mit.edu	37	11	5758404	5758404	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	OR56B1	NM_001005180	exon1	c.C658T	p.L220L	.	.	17	3	27	0	.	69
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140181914	140181914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PCDHA3	NM_031497	exon1	c.G1132A	p.D378N	.	.	81	10	116	0	.	98
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	71514665	71514666	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PCNX	NM_014982	exon22	c.4302_4303insT	p.L1434fs	.	.	74	13	63	0	.	91
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165827145	165827145	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PDE10A	NM_001130690	exon13	c.G1122A	p.T374T	.	.	90	57	125	0	.	519
PDE8B	8622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76633096	76633096	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PDE8B	NM_001029852	exon6	c.G753C	p.L251L	.	.	130	18	162	0	.	90
PMS2CL	441194	broad.mit.edu;bcgsc.ca	37	7	6786666	6786666	+	RNA	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NR_002217	exon5	c.1216-1G>C	.	.	.	231	44	235	0	.	.
PNMA2	10687	ucsc.edu	37	8	26366199	26366199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PNMA2	NM_007257	exon3	c.G73T	p.G25W	.	.	42	4	87	0	.	90
POLA2	23649	ucsc.edu;bcgsc.ca	37	11	65062035	65062035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	POLA2	NM_002689	exon15	c.G1372A	p.E458K	.	.	43	5	70	0	.	227
POLH	5429	broad.mit.edu	37	6	43581749	43581749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	POLH	NM_006502	exon11	c.A1597G	p.K533E	.	.	118	4	78	0	.	290
POTEA	340441	ucsc.edu	37	8	43173764	43173764	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	POTEA	NM_001005365	exon9	c.A1186T	p.R396W	.	.	41	4	91	0	.	91
POTEG	404785	broad.mit.edu	37	14	19553750	19553750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	POTEG	NM_001005356	exon1	c.A334G	p.S112G	.	.	617	10	633	3	.	1
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39472733	39472733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	POU6F2	NM_007252	exon8	c.G1084A	p.G362S	.	.	110	28	186	1	.	90
PPM1E	22843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57046925	57046925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PPM1E	NM_014906	exon4	c.C809T	p.A270V	.	.	175	27	141	0	.	291
PPT2-EGFL8	0	ucsc.edu	37	6	32134255	32134255	+	RNA	SNP	A	A	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	.	.	.	.	.	.	137	18	156	0	.	.
PRG3	10394	bcgsc.ca	37	11	57144355	57144355	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PRG3	NM_006093	exon6	c.G646C	p.D216H	.	.	10	4	33	0	.	90
PSMA3	5684	ucsc.edu	37	14	58738693	58738693	+	RNA	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PSMA3	.	.	.	.	.	.	58	1	75	0	.	90
PSMF1	9491	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1145687	1145687	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PSMF1	NM_006814	exon7	c.A779C	p.H260P	.	.	111	66	75	1	.	90
PTPRN2	5799	ucsc.edu	37	7	157985080	157985080	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PTPRN2	NM_130843	exon5	c.A488T	p.Q163L	.	.	34	4	81	0	.	295
PVR	5817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45150523	45150523	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PVR	NM_001135769	exon2	c.G108C	p.Q36H	.	.	83	12	67	0	.	90
PXDNL	137902	ucsc.edu	37	8	52339240	52339240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PXDNL	NM_144651	exon13	c.A1604G	p.Q535R	.	.	32	4	41	0	.	70
RAB4B	53916	bcgsc.ca	37	19	41286374	41286374	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	RAB4B	NM_016154	exon3	c.182delT	p.I61fs	.	.	332	262	132	1	.	181
RNF213	57674	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78319225	78319225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	RNF213	NM_001256071	exon29	c.G7090A	p.D2364N	.	.	82	31	67	1	.	577
RNR2	6053	broad.mit.edu	37	MT	2623	2623	+	RNA	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	.	.	.	.	.	.	7	4	42	0	.	.
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237540701	237540702	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	RYR2	NM_001035	exon8	c.542_543insCA	p.L181fs	.	.	87	18	74	0	.	158
SEMA5B	54437	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122632773	122632773	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SEMA5B	NM_001256347	exon15	c.G2226A	p.Q742Q	.	.	37	5	36	0	.	157
SHBG	6462	ucsc.edu	37	17	7533575	7533575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SHBG	NM_001040	exon1	c.G85A	p.A29T	.	.	42	4	49	0	.	90
SMG7	9887	broad.mit.edu	37	1	183511274	183511274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SMG7	NM_201569	exon14	c.A1479G	p.I493M	.	.	156	5	120	0	.	92
SND1	27044	ucsc.edu	37	7	127528025	127528025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SND1	NM_014390	exon13	c.A1414G	p.R472G	.	.	32	4	61	0	.	92
SNX29P1	100652781	bcgsc.ca	37	16	21396929	21396929	+	RNA	SNP	A	A	T	rs266788	bycluster	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	.	.	.	.	.	.	219	11	284	6	A|0.500;T|0.500	.
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108412294	108412294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SORCS1	NM_001206572	exon18	c.C2321T	p.S774F	.	.	100	49	84	0	.	153
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106976760	106976760	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SORCS3	NM_014978	exon19	c.T2614G	p.F872V	.	.	104	19	82	0	.	99
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158637739	158637739	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SPTA1	NM_003126	exon15	c.G1947A	p.E649E	.	.	106	72	79	0	.	142
ST6GALNAC3	256435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	77093235	77093235	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ST6GALNAC3	NM_152996	exon4	c.722delC	p.T241fs	.	.	31	11	31	0	.	95
SUGP2	10147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19136612	19136612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SUGP2	NM_014884	exon3	c.A545G	p.E182G	.	.	561	96	140	0	.	91
SYT10	341359	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33535289	33535289	+	Silent	SNP	G	G	A	rs10844571	byfrequency	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SYT10	NM_198992	exon5	c.C1365T	p.Y455Y	.	.	34	19	40	0	G|0.800;A|0.200	92
TAS2R43	259289	bcgsc.ca	37	12	11244390	11244390	+	Missense_Mutation	SNP	T	T	C	rs73064966		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TAS2R43	NM_176884	exon1	c.A439G	p.I147V	.	.	20	6	116	2	.	1
TAS2R43	259289	bcgsc.ca	37	12	11244432	11244432	+	Silent	SNP	A	A	G	rs111982292		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TAS2R43	NM_176884	exon1	c.T397C	p.L133L	.	.	19	8	107	4	.	1
TAS2R43	259289	bcgsc.ca	37	12	11244435	11244435	+	Missense_Mutation	SNP	T	T	C	rs111525185	byfrequency	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TAS2R43	NM_176884	exon1	c.A394G	p.M132V	.	.	19	8	108	4	T|0.504;C|0.496	1
TBX1	6899	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19751710	19751710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TBX1	NM_080647	exon5	c.C545T	p.A182V	.	.	55	28	63	2	.	154
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42610029	42610029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TCF20	NM_181492	exon1	c.C1283G	p.P428R	.	.	111	26	119	0	.	95
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30705184	30705184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TEX15	NM_031271	exon1	c.G1350T	p.R450S	.	.	64	47	101	0	.	97
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50683121	50683121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TFAP2D	NM_172238	exon2	c.C332T	p.T111I	.	.	91	55	113	0	.	159
TFF3	7033	ucsc.edu	37	21	43733736	43733736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TFF3	NM_003226	exon2	c.A130T	p.N44Y	.	.	42	4	59	0	.	91
TLL1	7092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166976398	166976398	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TLL1	NM_012464	exon13	c.A1695G	p.A565A	.	.	106	44	119	1	.	158
TMEM131	23505	ucsc.edu	37	2	98409060	98409060	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TMEM131	NM_015348	exon31	c.T3933C	p.P1311P	.	.	48	4	36	0	.	74
TMEM246	84302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104238798	104238798	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_032342	exon2	c.T577G	p.Y193D	.	.	81	19	94	0	.	.
TPRX1	284355	ucsc.edu;bcgsc.ca	37	19	48305646	48305646	+	Missense_Mutation	SNP	G	G	A	rs112842028		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TPRX1	NM_198479	exon2	c.C622T	p.P208S	.	.	20	12	27	1	G|0.500;A|0.500	90
TPSB2	64499	bcgsc.ca;mdanderson.org	37	16	1279574	1279574	+	Missense_Mutation	SNP	C	C	G	rs71384640		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_024164	exon3	c.G226C	p.V76L	.	.	21	9	46	2	G|1.000;|0.000	.
TRIM60	166655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	165962556	165962556	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TRIM60	NM_001258025	exon4	c.C1332T	p.F444F	.	.	82	18	82	1	.	226
TRIM60	166655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	165962559	165962559	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TRIM60	NM_001258025	exon4	c.A1335T	p.T445T	.	.	82	20	84	0	.	226
TRIP11	9321	ucsc.edu	37	14	92470128	92470128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TRIP11	NM_004239	exon11	c.C4192A	p.L1398I	.	.	35	4	75	0	.	1400
UNC79	57578	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94155051	94155051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_020818	exon45	c.C6536A	p.T2179N	.	.	32	10	109	0	.	.
XIRP2	129446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168105658	168105658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	XIRP2	NM_152381	exon9	c.G7756C	p.E2586Q	.	.	260	42	219	1	.	104
XKR7	343702	broad.mit.edu	37	20	30556350	30556350	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	XKR7	NM_001011718	exon1	c.A372C	p.G124G	.	.	31	8	26	6	.	137
XKR7	343702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30584708	30584708	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	XKR7	NM_001011718	exon3	c.C1188T	p.A396A	.	.	78	17	69	0	.	137
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100361668	100361668	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZAN	.	.	.	.	.	.	42	5	41	0	.	142
ZBED5	58486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10874768	10874768	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_021211	exon3	c.A1725G	p.R575R	.	.	41	14	87	0	.	.
ZBTB8OS	339487	ucsc.edu	37	1	33087506	33087506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZBTB8OS	NM_178547	exon7	c.A497G	p.Y166C	.	.	30	4	54	0	.	90
ZFPL1	7542	broad.mit.edu;bcgsc.ca	37	11	64854466	64854466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZFPL1	NM_006782	exon6	c.548delC	p.A183fs	.	.	45	9	63	0	.	91
ZKSCAN3	80317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28333341	28333341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZKSCAN3	NM_024493	exon6	c.G896A	p.G299D	.	.	148	56	103	0	.	92
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130323	45130323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZNF334	NM_018102	exon5	c.C1655G	p.T552S	.	.	77	15	60	0	.	92
ZNF729	100287226	bcgsc.ca	37	19	22499343	22499343	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZNF729	NM_001242680	exon4	c.C3124G	p.H1042D	.	.	53	8	44	0	.	24
ZXDB	158586	bcgsc.ca	37	X	57619517	57619517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZXDB	NM_007157	exon1	c.A1036G	p.T346A	.	.	209	36	295	5	.	130
