Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCG2	9429	bcgsc.ca	37	4	89020585	89020585	+	Missense_Mutation	SNP	G	G	T	rs143864112	alternate_allele	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ABCG2	NM_004827	exon12	c.C1383A	p.S461R	.	.	79	5	94	0	G|1.000;A|0.000	90
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58517052	58517052	+	Missense_Mutation	SNP	G	G	T	rs75760511		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ACOX2	NM_003500	exon7	c.C745A	p.Q249K	.	.	65	26	99	0	.	90
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41554074	41554074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ANK1	NM_001142446	exon27	c.G2890C	p.G964R	.	.	69	23	90	0	.	716
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89350329	89350329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ANKRD11	NM_001256183	exon9	c.C2621T	p.A874V	.	.	81	21	74	0	.	139
APOB	338	broad.mit.edu	37	2	21228188	21228188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	APOB	NM_000384	exon26	c.A11552G	p.E3851G	.	.	98	2	130	0	.	175
ARHGAP22	58504	broad.mit.edu	37	10	49663046	49663046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ARHGAP22	NM_001256024	exon6	c.A839G	p.E280G	.	.	64	5	97	0	.	228
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	63851284	63851284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ARID5B	NM_032199	exon10	c.T2062C	p.S688P	.	.	159	10	143	0	.	94
ASMTL	8623	broad.mit.edu	37	X	1536917	1536917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ASMTL	NM_004192	exon11	c.G1471A	p.A491T	.	.	315	6	289	0	.	62
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124340448	124340448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ATAD2	NM_014109	exon25	c.G3850A	p.D1284N	.	.	67	17	53	0	.	92
ATN1	1822	ucsc.edu	37	12	7045906	7045906	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ATN1	NM_001007026	exon5	c.G1476A	p.Q492Q	.	.	53	6	83	0	.	139
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160047535	160047535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ATP10B	NM_025153	exon15	c.G2235T	p.Q745H	.	.	179	50	198	0	.	72
BRPF3	27154	broad.mit.edu;ucsc.edu	37	6	36168416	36168416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	BRPF3	NM_015695	exon2	c.A317G	p.H106R	.	.	153	5	154	0	.	92
BSN	8927	broad.mit.edu	37	3	49691439	49691439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	BSN	NM_003458	exon5	c.T4450C	p.S1484P	.	.	36	3	65	0	.	97
C16orf55	124045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89724816	89724816	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	C16orf55	NM_001271910	exon2	c.A198T	p.A66A	.	.	39	24	72	0	.	90
C9orf135	138255	bcgsc.ca	37	9	72472831	72472831	+	Silent	SNP	C	C	T	rs10780682	byfrequency	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	C9orf135	NM_001010940	exon4	c.C387T	p.T129T	.	.	58	4	48	0	C|0.722;T|0.278	69
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94703723	94703723	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CCDC41	NM_016122	exon16	c.A1972T	p.M658L	.	.	147	57	170	0	.	90
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102439885	102439885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_016053	exon3	c.C163G	p.L55V	.	.	194	108	248	0	.	.
CD300C	10871	broad.mit.edu	37	17	72541045	72541045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CD300C	NM_006678	exon2	c.G103C	p.V35L	.	.	89	19	74	8	.	90
CDH4	1002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60318687	60318687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CDH4	NM_001794	exon3	c.G238T	p.G80W	.	.	109	29	147	1	.	282
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109794350	109794350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CELSR2	NM_001408	exon1	c.A1649G	p.D550G	.	.	68	26	147	0	.	526
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189871670	189871670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	COL3A1	NM_000090	exon44	c.C3209A	p.A1070D	.	.	186	98	187	0	.	581
COL7A1	1294	hgsc.bcm.edu	37	3	48624098	48624098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	COL7A1	NM_000094	exon25	c.C3301T	p.R1101W	.	.	90	4	140	0	.	160
CROCCP2	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	T	G	rs10796418		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	.	.	.	.	.	.	36	4	65	0	T|1.000;|0.000	.
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216738	3216738	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CSMD1	NM_033225	exon21	c.C3240T	p.A1080A	.	.	156	41	118	0	.	86
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	G	rs121913403	bycluster	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C110G	p.S37C	.	.	115	49	181	0	.	24361
DMBT1	1755	broad.mit.edu	37	10	124377777	124377777	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	DMBT1	NM_007329	exon38	c.T4749C	p.S1583S	.	.	91	8	100	2	.	494
DNM2	1785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10906053	10906053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	DNM2	NM_001005361	exon9	c.G1134T	p.E378D	.	.	45	29	53	0	.	471
DSPP	1834	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88536880	88536880	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	DSPP	NM_014208	exon5	c.C3066T	p.S1022S	.	.	68	8	90	1	.	90
EMC7	56851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34376643	34376643	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_020154	exon5	c.G621A	p.L207L	.	.	151	44	154	0	.	.
EP400	57634	hgsc.bcm.edu	37	12	132547084	132547084	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	EP400	NM_015409	exon47	c.G8172A	p.Q2724Q	.	.	102	16	114	0	.	520
FAM186A	121006	broad.mit.edu	37	12	50746486	50746486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	FAM186A	NM_001145475	exon4	c.A4129C	p.T1377P	.	.	144	11	155	6	.	68
GAREML	150946	ucsc.edu;bcgsc.ca	37	2	26399314	26399314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_001168241	exon2	c.G214T	p.V72F	.	.	40	4	64	0	.	.
GAS1	2619	mdanderson.org	37	9	89561103	89561103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	GAS1	NM_002048	exon1	c.C592T	p.R198C	.	.	14	3	20	0	.	226
GLI1	2735	broad.mit.edu	37	12	57865725	57865725	+	Missense_Mutation	SNP	C	C	T	rs149870317		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	GLI1	NM_005269	exon12	c.C3202T	p.R1068W	.	.	211	6	255	0	C|1.000;T|0.000	722
GTF2IRD2P1	401375	bcgsc.ca	37	7	72664015	72664015	+	RNA	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	.	.	.	.	.	.	48	1	49	0	.	.
GUCY2F	2986	broad.mit.edu	37	X	108673578	108673578	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	GUCY2F	NM_001522	exon8	c.C1749T	p.D583D	.	.	60	5	56	0	.	540
HLA-DMB	3109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32906517	32906518	+	Frame_Shift_Ins	INS	-	-	GCCCATT	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	HLA-DMB	NM_002118	exon2	c.281_282insAATGGGC	p.L94fs	.	.	148	45	150	0	.	90
HLX	3142	broad.mit.edu	37	1	221057861	221057861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	HLX	NM_021958	exon4	c.G1282A	p.G428S	.	.	135	5	92	1	.	70
HSD3B7	80270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30997473	30997473	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	HSD3B7	NM_025193	exon3	c.270delA	p.V90fs	.	.	162	43	216	0	.	90
IGSF10	285313	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151161484	151161484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	IGSF10	NM_178822	exon5	c.C5251T	p.R1751C	.	.	197	51	173	0	.	102
IL6	3569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22767222	22767222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	IL6	NM_000600	exon2	c.T179A	p.I60N	.	.	84	56	122	0	.	514
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53277343	53277343	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	IQSEC2	NM_001111125	exon7	c.G2535A	p.R845R	.	.	88	79	120	0	.	178
ISG20	3669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89182609	89182609	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ISG20	NM_002201	exon2	c.C12T	p.S4S	.	.	41	29	52	0	.	90
KANSL1	284058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	44109414	44109414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_001193466	exon14	c.A3089G	p.Q1030R	.	.	88	30	64	0	.	.
KRTAP10-2	386679	ucsc.edu	37	21	45971109	45971109	+	Missense_Mutation	SNP	G	G	A	rs77233671		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	KRTAP10-2	NM_198693	exon1	c.C233T	p.S78L	.	.	56	8	55	10	.	135
KRTAP4-3	85290	hgsc.bcm.edu	37	17	39324346	39324347	+	In_Frame_Ins	INS	-	-	TTT	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	KRTAP4-3	NM_033187	exon1	c.79_80insAAA	p.P27delinsKP	.	.	158	38	115	0	.	22
LCE1F	353137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152748923	152748923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	LCE1F	NM_178354	exon1	c.A76G	p.T26A	.	.	695	114	481	0	.	68
LRRC37BP1	147172	broad.mit.edu	37	17	28961033	28961033	+	RNA	SNP	T	T	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	.	.	.	.	.	.	134	3	125	1	.	.
LTK	4058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41800366	41800366	+	Missense_Mutation	SNP	A	A	G	rs55683312		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	LTK	NM_002344	exon9	c.T1150C	p.C384R	.	.	70	22	73	0	A|0.999;G|0.001	1377
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168314939	168314939	+	Missense_Mutation	SNP	G	G	A	rs149079362	byfrequency	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	MLLT4	NM_001040000	exon16	c.G2129A	p.R710Q	.	.	140	63	98	0	G|0.999;A|0.001	685
MROH8	140699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35769604	35769604	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	.	.	.	.	.	.	88	25	120	0	.	.
MUC17	140453	bcgsc.ca	37	7	100681474	100681474	+	Silent	SNP	A	A	G	rs140759809	byfrequency	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	MUC17	NM_001040105	exon3	c.A6777G	p.S2259S	.	.	82	5	110	1	A|1.000;G|0.000	95
MYO16	23026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	109707405	109707405	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	MYO16	NM_001198950	exon26	c.G3060A	p.K1020K	.	.	570	349	336	0	.	142
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46265070	46265070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NCOA3	NM_001174088	exon12	c.A1970G	p.K657R	.	.	93	58	126	0	.	229
NFIC	4782	broad.mit.edu	37	19	3449068	3449068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NFIC	NM_001245004	exon7	c.T1015C	p.S339P	.	.	83	32	121	34	.	226
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156849827	156849827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NTRK1	NM_002529	exon16	c.C2083T	p.P695S	.	.	185	12	124	0	.	1393
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5290351	5290351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NUP88	NM_002532	exon15	c.C1996A	p.Q666K	.	.	46	43	74	0	.	204
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228494331	228494331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OBSCN	NM_001271223	exon55	c.C14789T	p.T4930I	.	.	91	50	91	0	.	403
OR2T2	401992	broad.mit.edu	37	1	248616165	248616165	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OR2T2	NM_001004136	exon1	c.G67C	p.A23P	.	.	2465	50	1619	0	.	23
OR2T4	127074	bcgsc.ca	37	1	248524971	248524971	+	Missense_Mutation	SNP	C	C	A	rs45554631		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OR2T4	NM_001004696	exon1	c.C89A	p.A30D	.	.	51	29	207	4	.	68
OR2T4	127074	bcgsc.ca	37	1	248524975	248524975	+	Silent	SNP	T	T	C	rs45627735		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OR2T4	NM_001004696	exon1	c.T93C	p.N31N	.	.	60	44	218	8	T|0.973;C|0.027	68
OR4M1	441670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	20249255	20249255	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OR4M1	NM_001005500	exon1	c.C774A	p.Y258X	.	.	368	82	355	0	.	68
OR8H2	390151	broad.mit.edu	37	11	55872537	55872537	+	Missense_Mutation	SNP	A	A	G	rs61746549	byfrequency	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OR8H2	NM_001005200	exon1	c.A19G	p.N7D	.	.	109	5	175	2	A|0.999;G|0.001	70
OSR1	130497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	19553505	19553505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OSR1	NM_145260	exon2	c.A62G	p.Y21C	.	.	126	16	138	0	.	257
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72926856	72926856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OTOP2	NM_178160	exon6	c.G1126C	p.A376P	.	.	130	68	122	0	.	134
OTX2	5015	bcgsc.ca	37	14	57268457	57268457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OTX2	NM_001270525	exon3	c.T890C	p.L297S	.	.	85	5	131	0	.	205
PCCA	5095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100925472	100925472	+	Silent	SNP	C	C	A	rs138149179	alternate_allele	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCCA	NM_001178004	exon12	c.C937A	p.R313R	.	.	179	57	88	0	C|0.999;T|0.000	227
PCDHA1	56147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140167835	140167835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCDHA1	NM_031410	exon1	c.C1960G	p.H654D	.	.	61	38	58	0	.	23
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140562669	140562669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCDHB16	NM_020957	exon1	c.C535T	p.R179W	.	.	78	16	64	0	.	92
PCNT	5116	broad.mit.edu	37	21	47769713	47769713	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCNT	NM_006031	exon8	c.C1323T	p.S441S	.	.	76	4	97	0	.	141
PDRG1	81572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30538175	30538175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PDRG1	NM_030815	exon2	c.A103G	p.T35A	.	.	66	44	66	0	.	90
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96416768	96416768	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PHF2	NM_005392	exon7	c.C863G	p.S288C	.	.	59	40	80	0	.	91
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64401788	64401788	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PHF3	NM_015153	exon4	c.C2351G	p.T784S	.	.	215	104	142	0	.	229
PIPOX	51268	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27380528	27380528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PIPOX	NM_016518	exon4	c.G575A	p.S192N	.	.	216	103	185	1	.	90
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71967898	71967898	+	RNA	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PKD1L3	.	.	.	.	.	.	136	48	167	1	.	68
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42378519	42378519	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PLA2G4D	NM_178034	exon4	c.T279C	p.Y93Y	.	.	50	30	65	0	.	136
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74998430	74998430	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	POC5	NM_001099271	exon5	c.G513A	p.K171K	.	.	92	27	69	0	.	45
PRAMEF4	400735	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	12942131	12942131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PRAMEF4	NM_001009611	exon3	c.G419C	p.C140S	.	.	13	9	22	0	.	45
PRNP	5621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4680289	4680289	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PRNP	NM_000311	exon2	c.C423T	p.F141F	.	.	92	23	115	0	.	514
PRRT4	401399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127999248	127999248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_001174164	exon4	c.G712A	p.E238K	.	.	115	71	147	0	.	.
PTMA	5757	broad.mit.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	.	.	48	5	46	0	.	226
PTPN21	11099	broad.mit.edu	37	14	88936355	88936355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PTPN21	NM_007039	exon16	c.C2911A	p.Q971K	.	.	69	3	128	0	.	230
RASA3	22821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114751254	114751254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	RASA3	NM_007368	exon23	c.A2261C	p.K754T	.	.	149	89	117	0	.	658
SENP7	57337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101136470	101136470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SENP7	NM_020654	exon5	c.A449G	p.E150G	.	.	129	34	91	0	.	661
SERBP1	26135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67895954	67895954	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SERBP1	NM_001018067	exon1	c.C30A	p.G10G	.	.	134	50	186	0	.	91
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	7205790	7205790	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SFMBT2	NM_001029880	exon21	c.2627delA	p.K876fs	.	.	68	37	94	0	.	141
SLA2	84174	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35269783	35269783	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLA2	.	.	.	.	.	.	48	26	48	0	.	90
SLC25A12	8604	broad.mit.edu	37	2	172669958	172669958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC25A12	NM_003705	exon11	c.G1062A	p.M354I	.	.	272	6	242	0	.	90
SLC25A5	292	hgsc.bcm.edu	37	X	118603984	118603984	+	Missense_Mutation	SNP	G	G	A	rs199678822		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	SLC25A5,NS,carcinoma,0	SLC25A5	NM_001152	exon2	c.G472A	p.G158S	.	.	60	8	34	1	.	131
SLC29A2	3177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66135014	66135014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC29A2	NM_001532	exon7	c.T654C	p.F218F	.	.	62	56	131	0	.	91
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211749002	211749002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC30A1	NM_021194	exon2	c.C1252A	p.Q418K	.	.	125	120	107	1	.	93
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	101561932	101561932	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC5A8	NM_145913	exon11	c.1262delG	p.G421fs	.	.	207	59	235	0	.	90
SLCO1C1	53919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20858984	20858984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLCO1C1	NM_017435	exon4	c.C373T	p.L125F	.	.	89	19	57	0	.	97
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	20490566	20490566	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLIT2	NM_004787	exon8	c.736delA	p.N246fs	.	.	101	38	191	0	.	521
SMARCA2	6595	broad.mit.edu;bcgsc.ca	37	9	2076305	2076305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SMARCA2	NM_139045	exon13	c.A2012G	p.E671G	.	.	173	6	194	0	.	653
SMUG1	23583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54576393	54576393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SMUG1	NM_001243790	exon4	c.A300C	p.E100D	.	.	73	20	74	0	.	227
SOGA2	23255	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	8783884	8783884	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_015210	exon6	c.C774T	p.S258S	.	.	64	22	110	0	.	.
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104048376	104048376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	STAB2	NM_017564	exon13	c.T1451C	p.V484A	.	.	140	41	158	0	.	104
STX2	2054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	131285985	131285985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	STX2	NM_194356	exon7	c.G512C	p.G171A	.	.	150	12	165	0	.	90
SULT1C3	442038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	108881765	108881765	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SULT1C3	NM_001008743	exon7	c.G873A	p.K291K	.	.	184	62	149	3	.	91
TAAR2	9287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	132938951	132938951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TAAR2	NM_001033080	exon2	c.T394G	p.F132V	.	.	143	9	122	0	.	91
TCEB3B	51224	mdanderson.org	37	18	44561287	44561287	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TCEB3B	NM_016427	exon1	c.A349T	p.T117S	.	.	20	5	61	0	.	156
TCHP	84260	hgsc.bcm.edu	37	12	110353220	110353220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TCHP	NM_001143852	exon12	c.C1333T	p.R445W	.	.	98	4	110	0	.	91
THADA	63892	broad.mit.edu	37	2	43655259	43655259	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	THADA	NM_001083953	exon28	c.T4038C	p.P1346P	.	.	109	4	85	0	.	228
TM6SF1	53346	broad.mit.edu;bcgsc.ca	37	15	83805347	83805347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TM6SF1	NM_023003	exon10	c.C1036T	p.P346S	.	.	247	8	301	0	.	91
TMPRSS15	5651	hgsc.bcm.edu	37	21	19704474	19704474	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TMPRSS15	NM_002772	exon14	c.T1581C	p.P527P	.	.	87	5	93	0	.	160
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652	bycluster	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon7	c.G743A	p.R248Q	.	.	46	42	102	0	C|1.000;|0.000	70225
TRPM2	7226	bcgsc.ca	37	21	45846589	45846589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TRPM2	NM_003307	exon26	c.A3842G	p.K1281R	.	.	65	4	77	1	.	92
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_145301	exon3	c.G152A	p.C51Y	.	.	161	8	245	11	.	.
VENTXP7	391518	bcgsc.ca	37	3	21447560	21447560	+	RNA	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	.	.	.	.	.	.	5	3	17	0	.	.
WASH2P	375260	broad.mit.edu	37	2	114353290	114353290	+	RNA	SNP	T	T	C	rs11267060		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	.	.	.	.	.	.	89	6	62	0	.	.
WDR67	93594	broad.mit.edu	37	8	124140618	124140618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	WDR67	NM_001145088	exon14	c.G1982T	p.S661I	.	.	329	7	226	0	.	226
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39226567	39226567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	XIRP1	NM_194293	exon2	c.C4370A	p.A1457D	.	.	54	23	83	0	.	158
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104195	168104195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	XIRP2	NM_152381	exon9	c.C6293T	p.S2098L	.	.	212	60	221	0	.	104
ZBTB8OS	339487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	33087489	33087489	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZBTB8OS	NM_178547	exon7	c.G514T	p.E172X	.	.	47	24	74	0	.	90
ZC3H11A	9877	broad.mit.edu	37	1	203821424	203821424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZC3H11A	NM_014827	exon20	c.T2330C	p.I777T	.	.	577	5	356	0	.	515
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	.	.	301	5	203	1	.	515
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10445315	10445315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZNF518B	NM_053042	exon3	c.C2638G	p.L880V	.	.	39	5	82	0	.	72
ZNF814	730051	bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	145	43	111	3	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	165	62	117	2	.	.
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57829551	57829551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZNF831	NM_178457	exon5	c.A4787G	p.Y1596C	.	.	194	62	233	0	.	126
ZSCAN21	7589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99662023	99662023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZSCAN21	NM_145914	exon4	c.G1205C	p.G402A	.	.	62	19	60	0	.	93
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44511960	44511960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZSWIM1	NM_080603	exon2	c.C729A	p.H243Q	.	.	41	10	70	0	.	91
OR2T4	127074	bcgsc.ca	37	1	248524967	248524968	+	Missense_Mutation	DNP	AT	AT	GC	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	.	.	.	p.M29A	.	.	.	.	.	.	.	
