Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57219583	57219583	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	AASDH	NM_181806	exon9	c.A1563G	p.P521P	.	.	66	16	104	0	.	94
ADAM21P1	145241	broad.mit.edu	37	14	70714300	70714300	+	RNA	SNP	A	A	G	rs61738695	byfrequency	TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	.	.	.	.	.	.	93	4	80	0	A|0.221;G|0.779	.
ADAM21P1	145241	broad.mit.edu	37	14	70714357	70714357	+	RNA	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	.	.	.	.	.	.	80	6	54	0	.	.
ADH1A	124	ucsc.edu	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ADH1A	NM_000667	exon6	c.G759A	p.E253E	.	.	205	4	250	7	.	227
ANKRD20A8P	729171	bcgsc.ca	37	2	95501867	95501867	+	RNA	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	.	.	.	.	.	.	350	111	317	1	.	.
ANO8	57719	broad.mit.edu	37	19	17438622	17438622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ANO8	NM_020959	exon14	c.T2294C	p.F765S	.	.	298	5	289	1	.	93
AQR	9716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	35149307	35149307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	AQR	NM_014691	exon35	c.A4144T	p.T1382S	.	.	44	15	47	0	.	135
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	8216406	8216417	+	In_Frame_Del	DEL	CGGTCACCCTGC	CGGTCACCCTGC	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	CGGTCACCCTGC	CGGTCACCCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARHGEF15	NM_025014	exon3	c.768_779del	p.256_260del	.	.	33	11	58	0	.	230
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27094294	27094294	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARID1A	NM_006015	exon11	c.C3002G	p.S1001C	.	.	69	33	76	0	.	584
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	968403	968403	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARID3A	NM_005224	exon8	c.1496-2A>T	.	.	.	152	56	153	0	.	90
ARNT	405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150788840	150788840	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARNT	NM_001668	exon19	c.A1845T	p.S615S	.	.	124	21	66	0	.	1085
ARPC2	10109	hgsc.bcm.edu	37	2	219110174	219110174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARPC2	NM_005731	exon7	c.C581T	p.T194I	.	.	83	4	74	0	.	91
ART5	116969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	3661593	3661593	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ART5	NM_001079536	exon3	c.T66A	p.A22A	.	.	52	27	33	0	.	91
BBS12	166379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123664496	123664496	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BBS12	NM_001178007	exon3	c.T1449C	p.D483D	.	.	54	15	108	0	.	92
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	99641808	99641808	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BCL11B	NM_138576	exon4	c.C1365G	p.Y455X	.	.	44	5	47	0	.	1147
BMP5	653	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55620351	55620351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BMP5	NM_021073	exon7	c.C1345T	p.R449C	.	.	430	142	327	2	.	516
C14orf39	317761	broad.mit.edu	37	14	60928082	60928082	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	C14orf39	NM_174978	exon13	c.A1107G	p.K369K	.	.	246	4	175	0	.	94
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159776435	159776435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	C1QTNF2	NM_031908	exon3	c.G733A	p.D245N	.	.	77	19	67	0	.	91
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20257971	20257971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	C20orf26	NM_015585	exon22	c.G2665A	p.A889T	.	.	105	21	101	0	.	94
CAGE1	285782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7334305	7334305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CAGE1	NM_001170692	exon12	c.A2388T	p.K796N	.	.	76	32	49	0	.	22
CAMKV	79012	broad.mit.edu	37	3	49898156	49898156	+	Silent	SNP	C	C	T	rs147195969		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CAMKV	NM_024046	exon8	c.G768A	p.S256S	.	.	81	3	77	0	C|1.000;T|0.000	613
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	90573432	90573432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CASP8AP2	NM_001137667	exon7	c.G2004T	p.M668I	.	.	89	30	93	0	.	24
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112357309	112357309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CCDC80	NM_199511	exon2	c.C1444T	p.P482S	.	.	66	22	67	0	.	92
CCT6P1	643253	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	.	.	.	.	.	.	167	5	86	1	.	.
CDKN1B	1027	broad.mit.edu	37	12	12870941	12870941	+	Silent	SNP	C	C	T	rs35456792	byfrequency	TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CDKN1B	NM_004064	exon1	c.C168T	p.S56S	.	.	217	5	149	0	C|0.995;T|0.005	1271
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104084644	104084644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CENPE	NM_001813	exon17	c.G1714T	p.D572Y	.	.	327	77	319	0	.	277
CEP89	84902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33378692	33378692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CEP89	NM_032816	exon17	c.A1931T	p.N644I	.	.	86	31	76	0	.	94
COL13A1	1305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71692351	71692351	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	COL13A1	NM_001130103	exon30	c.A1686T	p.P562P	.	.	91	20	86	0	.	91
CPD	1362	broad.mit.edu	37	17	28772820	28772820	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CPD	NM_001304	exon12	c.A2655G	p.K885K	.	.	279	5	209	1	.	92
CSHL1	1444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61987890	61987890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CSHL1	NM_022579	exon3	c.T196A	p.Y66N	.	.	97	44	94	0	.	90
CST5	1473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	23856826	23856826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CST5	NM_001900	exon3	c.A428T	p.X143L	.	.	142	56	97	0	.	90
CXCR2	3579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218999787	218999787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CXCR2	NM_001168298	exon4	c.T263A	p.L88Q	.	.	190	76	188	0	.	658
CYP2J2	1573	broad.mit.edu	37	1	60392393	60392393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CYP2J2	NM_000775	exon1	c.C26T	p.A9V	.	.	155	5	136	0	.	91
CYP8B1	1582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42916188	42916188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CYP8B1	NM_004391	exon1	c.A1121G	p.Y374C	.	.	144	16	127	0	.	92
DEFB119	245932	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	29978247	29978247	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	DEFB119	NM_001271209	exon1	c.A40T	p.I14L	.	.	190	50	126	1	.	90
DHX57	90957	broad.mit.edu	37	2	39095413	39095413	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	DHX57	NM_198963	exon2	c.T135A	p.G45G	.	.	74	3	71	1	.	228
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95557445	95557445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	DICER1	NM_030621	exon27	c.A5529T	p.E1843D	.	.	124	27	103	0	.	961
DNAH7	56171	broad.mit.edu	37	2	196851853	196851853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	DNAH7	NM_018897	exon14	c.C1691A	p.A564E	.	.	270	4	223	1	.	102
EFCAB14	9813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47154101	47154101	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_014774	exon7	c.A911T	p.Q304L	.	.	130	21	131	0	.	.
EML6	400954	broad.mit.edu	37	2	55106753	55106753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_001039753	exon16	c.A2414G	p.K805R	.	.	177	4	167	0	.	.
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	65707540	65707540	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	EYS	NM_001142800	exon14	c.C2194T	p.Q732X	.	.	557	54	244	0	.	660
FAM169B	283777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99023922	99023922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_182562	exon4	c.G91A	p.D31N	.	.	137	24	116	0	.	.
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80039126	80039126	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FASN	NM_004104	exon38	c.6509delT	p.L2170fs	.	.	48	15	46	0	.	90
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207655393	207655393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FASTKD2	NM_001136193	exon11	c.G1996T	p.G666C	.	.	65	13	53	0	.	118
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5945116	5945116	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FBXO18	NM_032807	exon3	c.G288C	p.P96P	.	.	114	37	76	0	.	228
FBXO7	25793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32881139	32881139	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FBXO7	NM_012179	exon4	c.G730C	p.E244Q	.	.	151	25	112	0	.	228
FGF18	8817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170876191	170876191	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FGF18	NM_003862	exon4	c.C291T	p.V97V	.	.	136	24	147	0	.	522
FLG	2312	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	152276112	152276112	+	Silent	SNP	C	C	T	rs201725426		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FLG	NM_002016	exon3	c.G11250A	p.A3750A	.	.	238	26	143	0	C|0.999;T|0.001	106
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152278842	152278842	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FLG	NM_002016	exon3	c.A8520T	p.T2840T	.	.	350	80	187	0	.	106
FOLH1	2346	ucsc.edu	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	rs116795343	byfrequency	TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FOLH1	NM_004476	exon7	c.G842A	p.R281H	.	.	301	28	196	3	C|0.974;T|0.026	579
FRG1	2483	bcgsc.ca	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FRG1	NM_004477	exon5	c.C409A	p.Q137K	.	.	213	13	183	4	.	90
G2E3	55632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31077159	31077159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	G2E3	NM_017769	exon12	c.C1384T	p.P462S	.	.	178	19	89	0	.	660
GFI1	2672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	92946582	92946582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GFI1	NM_005263	exon4	c.C362T	p.P121L	.	.	152	29	164	0	.	514
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131296078	131296078	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GLE1	NM_001499	exon11	c.A1494T	p.A498A	.	.	120	49	131	0	.	22
GRK7	131890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141535712	141535712	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GRK7	NM_139209	exon4	c.G1482T	p.G494G	.	.	101	22	98	0	.	522
HSCB	150274	broad.mit.edu	37	22	29138126	29138126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	HSCB	NM_172002	exon1	c.T43G	p.F15V	.	.	81	17	65	14	.	226
IL20	50604	broad.mit.edu	37	1	207039939	207039939	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	IL20	NM_018724	exon3	c.C336T	p.L112L	.	.	281	7	207	0	.	90
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57179476	57179476	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KIAA1211	NM_020722	exon7	c.C468A	p.A156A	.	.	71	15	84	0	.	70
KIAA1755	85449	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36856566	36856566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KIAA1755	NM_001029864	exon6	c.G1948A	p.A650T	.	.	27	4	32	0	.	95
KRTAP10-12	386685	bcgsc.ca	37	21	46117561	46117561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KRTAP10-12	NM_198699	exon1	c.C445G	p.Q149E	.	.	28	13	27	0	.	90
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46117560	46117561	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KRTAP10-12	NM_198699	exon1	c.444_445insTT	p.Q148fs	.	.	28	13	27	0	.	90
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_033059	exon1	c.C481G	p.L161V	.	.	88	13	62	1	G|0.500;C|0.500	.
KRTAP4-6	81871	ucsc.edu	37	17	39296254	39296254	+	Silent	SNP	C	C	T	rs72483263		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_030976	exon1	c.G486A	p.P162P	.	.	103	25	92	14	C|0.500;T|0.500	.
KRTAP5-5	439915	ucsc.edu	37	11	1651613	1651613	+	Silent	SNP	T	T	C	rs76143925	byfrequency	TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KRTAP5-5	NM_001001480	exon1	c.T543C	p.P181P	.	.	104	28	62	3	T|0.671;C|0.329	23
KRTAP5-5	439915	ucsc.edu	37	11	1651615	1651615	+	Missense_Mutation	SNP	A	A	G	rs74396270		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KRTAP5-5	NM_001001480	exon1	c.A545G	p.Y182C	.	.	103	28	62	3	.	23
KRTAP5-5	439915	ucsc.edu	37	11	1651645	1651645	+	Missense_Mutation	SNP	A	A	G	rs77039648		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KRTAP5-5	NM_001001480	exon1	c.A575G	p.Y192C	.	.	101	29	63	6	A|0.999;G|0.001	23
KXD1	79036	broad.mit.edu	37	19	18672903	18672903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_001171948	exon3	c.G37T	p.G13C	.	.	84	3	78	0	.	.
LMNB2	84823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2435009	2435009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	LMNB2	NM_032737	exon5	c.A845T	p.Y282F	.	.	15	5	17	0	.	290
LOC729121	0	broad.mit.edu	37	2	108443281	108443281	+	RNA	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	.	.	.	.	.	.	21	8	15	0	.	.
LRRC41	10489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46746117	46746117	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	LRRC41	NM_006369	exon6	c.C1872T	p.A624A	.	.	308	65	309	0	.	156
LRRCC1	85444	broad.mit.edu	37	8	86019547	86019547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	LRRCC1	NM_033402	exon1	c.C17T	p.A6V	.	.	161	4	90	1	.	90
MAP2K3	5606	broad.mit.edu	37	17	21206497	21206497	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MAP2K3	NM_145109	exon7	c.C519A	p.I173I	.	.	117	4	132	0	.	790
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53879187	53879187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MAP3K12	NM_001193511	exon5	c.C894A	p.S298R	.	.	97	38	74	0	.	604
MAPK6	5597	ucsc.edu;bcgsc.ca	37	15	52342222	52342222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MAPK6	NM_002748	exon3	c.G588T	p.W196C	.	.	37	4	33	0	.	1403
MATN4	8785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43929960	43929960	+	Splice_Site	DEL	C	C	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MATN4	NM_003833	exon5	c.766+1G>-	.	.	.	112	26	48	0	.	90
MED28	80306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17625401	17625401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MED28	NM_025205	exon4	c.G517T	p.A173S	.	.	171	57	265	0	.	90
MFAP5	8076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8807070	8807070	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MFAP5	NM_003480	exon6	c.T180A	p.A60A	.	.	197	63	168	0	.	577
MLLT3	4300	broad.mit.edu	37	9	20414346	20414346	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MLLT3	NM_004529	exon5	c.C498T	p.S166S	.	.	49	3	42	1	.	660
MRC1	4360	broad.mit.edu	37	10	18145269	18145269	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MRC1	NM_002438	exon9	c.A1506G	p.K502K	.	.	567	6	406	1	.	68
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085994	9085994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MUC16	NM_024690	exon1	c.A5821T	p.I1941F	.	.	69	35	60	0	.	566
MUC4	4585	broad.mit.edu	37	3	195513285	195513285	+	Silent	SNP	G	G	T	rs200293322	byfrequency	TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MUC4	NM_018406	exon2	c.C5166A	p.S1722S	.	.	407	7	385	0	G|0.988;T|0.013	90
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50789947	50789947	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MYH14	NM_001145809	exon34	c.A4748T	p.K1583M	.	.	95	29	94	0	.	23
NAP1L1	4673	broad.mit.edu	37	12	76449901	76449901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NAP1L1	NM_004537	exon7	c.A470G	p.K157R	.	.	207	3	145	0	.	92
NAPB	63908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23360527	23360527	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NAPB	NM_022080	exon9	c.T712G	p.S238A	.	.	447	108	350	0	.	91
NCOA7	135112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126196071	126196071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NCOA7	NM_001199619	exon5	c.A308C	p.K103T	.	.	118	29	128	0	.	227
NLGN1	22871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173996849	173996849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NLGN1	NM_014932	exon6	c.A1058T	p.H353L	.	.	181	43	155	1	.	231
OBSCN	84033	broad.mit.edu	37	1	228538587	228538587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	OBSCN	NM_001271223	exon88	c.A21233G	p.E7078G	.	.	491	5	340	0	.	403
OGFR	11054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	61443964	61443964	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	OGFR	NM_007346	exon7	c.G997C	p.E333Q	.	.	113	45	70	0	.	68
OSBPL3	26031	ucsc.edu;bcgsc.ca	37	7	24881964	24881964	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	OSBPL3	NM_015550	exon13	c.T1335A	p.T445T	.	.	182	57	142	2	.	204
PABPC5	140886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	90691012	90691012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	PABPC5,NS,carcinoma,-1	PABPC5	NM_080832	exon2	c.G436T	p.G146C	.	.	110	75	76	0	.	110
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140562737	140562737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PCDHB16	NM_020957	exon1	c.T603A	p.D201E	.	.	80	25	78	0	.	92
PCYT2	5833	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79865686	79865686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PCYT2	NM_002861	exon5	c.G455T	p.R152L	.	.	54	8	55	0	.	68
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20792858	20792858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PDE3A	NM_000921	exon10	c.C2218A	p.H740N	.	.	91	17	64	0	.	94
PMFBP1	83449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72198720	72198720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PMFBP1	NM_031293	exon3	c.G108T	p.Q36H	.	.	62	8	50	0	.	92
PNLIPRP3	119548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118202641	118202641	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PNLIPRP3	NM_001011709	exon3	c.A279T	p.I93I	.	.	88	15	90	0	.	91
POTEG	404785	broad.mit.edu	37	14	19553528	19553528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	POTEG	NM_001005356	exon1	c.A112G	p.S38G	.	.	1112	12	641	2	.	1
PRG4	10216	ucsc.edu	37	1	186276285	186276285	+	Silent	SNP	T	T	C	rs145095882	byfrequency	TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PRG4	NM_005807	exon7	c.T1434C	p.T478T	.	.	87	23	48	3	T|0.998;C|0.002	91
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125141054	125141054	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PTGS1	NM_000962	exon5	c.T353G	p.V118G	.	.	107	15	116	0	.	228
RAB3GAP1	22930	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	135878431	135878431	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RAB3GAP1	NM_001172435	exon8	c.C691T	p.R231X	.	.	139	26	107	1	.	92
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37117219	37117219	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RALGAPB	NM_020336	exon2	c.T144G	p.P48P	.	.	179	41	92	0	.	92
RBM12	10137	bcgsc.ca	37	20	34241800	34241800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RBM12	NM_001198840	exon2	c.C1445A	p.A482D	.	.	114	5	64	0	.	93
RIMS2	9699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104927768	104927768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RIMS2	NM_001100117	exon7	c.A1858G	p.I620V	.	.	151	81	85	1	.	279
RIOK2	55781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96503531	96503531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RIOK2	NM_001159749	exon8	c.A1037G	p.E346G	.	.	89	14	108	0	.	419
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86616085	86616085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RMI1	NM_024945	exon3	c.A184T	p.R62W	.	.	123	37	146	0	.	90
RP1	6101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55534080	55534080	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RP1	NM_006269	exon2	c.A554T	p.Q185L	.	.	198	107	140	1	.	102
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75115172	75115172	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RPS3	NM_001260506	exon5	c.G507A	p.V169V	.	.	177	19	98	0	.	90
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71656987	71656987	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RUFY3	NM_014961	exon13	c.A1383T	p.A461A	.	.	501	108	580	1	.	90
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38945876	38945876	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RYR1	NM_001042723	exon14	c.G1442C	p.G481A	.	.	67	25	91	0	.	100
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237872824	237872824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RYR2	NM_001035	exon70	c.T10187G	p.F3396C	.	.	159	68	79	1	.	158
SEC14L1	6397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	75186883	75186883	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SEC14L1	NM_001204408	exon6	c.64-2A>T	.	.	.	39	12	41	0	.	92
SERPINB10	5273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61584734	61584734	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB10	NM_005024	exon2	c.A213C	p.E71D	.	.	304	107	238	0	.	227
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61323009	61323009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB3	NM_006919	exon8	c.T1055A	p.F352Y	.	.	128	58	137	0	.	228
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61323101	61323101	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB3	NM_006919	exon8	c.C963T	p.R321R	.	.	133	32	109	0	.	228
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148388485	148388485	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SH3TC2	NM_024577	exon15	c.A3407T	p.Q1136L	.	.	153	61	131	0	.	92
SH3YL1	26751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234273	234273	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SH3YL1	NM_001159597	exon6	c.292-1G>A	.	.	.	83	17	63	0	.	91
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44837443	44837443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SIK1	NM_173354	exon13	c.G1956T	p.E652D	.	.	80	20	65	0	.	346
SKOR1	390598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68126112	68126112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SKOR1	NM_001258024	exon15	c.A2545C	p.K849Q	.	.	69	17	57	0	.	90
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73273550	73273550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC25A19	NM_001126122	exon6	c.C658G	p.L220V	.	.	59	20	66	0	.	91
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	92330525	92330525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC26A7	NM_134266	exon5	c.G559T	p.A187S	.	.	176	22	74	0	.	92
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46633498	46633498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC38A1	NM_030674	exon3	c.A86G	p.N29S	.	.	108	20	96	0	.	518
SLC6A17	388662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	110714799	110714799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC6A17	NM_001010898	exon3	c.T404A	p.I135K	.	.	25	4	45	0	.	92
SLC6A19	340024	hgsc.bcm.edu	37	5	1201802	1201802	+	Missense_Mutation	SNP	G	G	T	rs200291939	alternate_allele	TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC6A19	NM_001003841	exon1	c.G37T	p.A13S	.	.	71	4	62	0	G|0.999;A|0.001	90
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31484509	31484509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SMTN	NM_001207018	exon3	c.C379T	p.R127W	.	.	103	19	73	0	.	154
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88396229	88396229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SMYD1	NM_198274	exon6	c.T814A	p.F272I	.	.	119	20	132	0	.	229
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41021261	41021261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SPTBN4	NM_020971	exon15	c.G2809A	p.V937I	.	.	105	20	64	0	.	94
SRCRB4D	136853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76023205	76023205	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SRCRB4D	NM_080744	exon8	c.C963G	p.P321P	.	.	205	37	117	0	.	91
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2812757	2812757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SRRM2	NM_016333	exon11	c.C2228T	p.S743F	.	.	103	25	92	0	.	93
TCEA1	6917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54882968	54882968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TCEA1	NM_006756	exon9	c.G881A	p.C294Y	.	.	397	56	236	0	.	661
TCIRG1	10312	broad.mit.edu	37	11	67810850	67810850	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TCIRG1	NM_006019	exon6	c.T516G	p.G172G	.	.	53	17	25	9	.	227
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128134892	128134892	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	THEMIS	NM_001010923	exon4	c.A894T	p.Q298H	.	.	103	24	120	0	.	94
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54672012	54672012	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TMC4	NM_001145303	exon5	c.C700T	p.L234L	.	.	130	38	136	0	.	91
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140086995	140086995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TPRN	NM_001128228	exon2	c.C1874T	p.S625L	.	.	59	6	65	0	.	90
TRIO	7204	broad.mit.edu	37	5	14391018	14391018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TRIO	NM_007118	exon27	c.G4137T	p.K1379N	.	.	248	5	154	2	.	562
TTC13	79573	broad.mit.edu	37	1	231097015	231097015	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TTC13	NM_001122835	exon2	c.C306T	p.C102C	.	.	151	6	82	0	.	92
TTI1	9675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36642105	36642105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TTI1	NM_014657	exon3	c.A114T	p.Q38H	.	.	188	55	109	0	.	94
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94088446	94088446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_020818	exon30	c.A4336G	p.I1446V	.	.	103	24	85	0	.	.
USP43	124739	broad.mit.edu	37	17	9615298	9615298	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	USP43	NM_153210	exon14	c.C2184T	p.S728S	.	.	47	5	63	0	.	637
USP48	84196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22021689	22021689	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	USP48	NM_032236	exon23	c.2753delA	p.K918fs	.	.	56	16	50	0	.	659
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41069765	41069765	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	USP9X	NM_001039591	exon33	c.T5019A	p.L1673L	.	.	178	55	108	0	.	563
VWA8	23078	broad.mit.edu	37	13	42266012	42266012	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_015058	exon31	c.A3738G	p.K1246K	.	.	490	5	427	0	.	.
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61026465	61026465	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	VWCE	NM_152718	exon20	c.C2550G	p.T850T	.	.	50	18	49	0	.	91
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	1	43687775	43687775	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	WDR65	NM_001195831	exon15	c.2342-1G>A	.	.	.	182	34	192	0	.	91
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168103964	168103964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	XIRP2	NM_152381	exon9	c.C6062A	p.A2021D	.	.	287	48	204	0	.	104
ZC3H11A	9877	broad.mit.edu	37	1	203821424	203821424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZC3H11A	NM_014827	exon20	c.T2330C	p.I777T	.	.	481	4	238	0	.	515
ZC3H11A	9877	broad.mit.edu	37	1	203821496	203821496	+	Missense_Mutation	SNP	T	T	C	rs3911885		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZC3H11A	NM_014827	exon20	c.T2402C	p.L801P	.	.	349	7	172	0	.	515
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	.	.	302	8	155	0	.	515
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19823308	19823308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF14	NM_021030	exon4	c.G782A	p.S261N	.	.	109	26	66	0	.	517
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45129982	45129982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF334	NM_018102	exon5	c.C1996T	p.R666C	.	.	221	20	116	0	.	92
ZNF383	163087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37734528	37734528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF383	NM_152604	exon5	c.G1390C	p.D464H	.	.	127	18	104	0	.	92
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31039817	31039817	+	Silent	SNP	C	C	T	rs202189721		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF536	NM_014717	exon4	c.C3291T	p.T1097T	.	.	108	18	77	0	C|0.999;T|0.001	144
ZNF576	79177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44103150	44103150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF576	NM_001145347	exon3	c.G253A	p.A85T	.	.	128	36	73	0	.	90
PRG4	10216	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	186276282	186276283	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	.	.	.	p.T478A	.	.	.	.	.	.	.	
