Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCP2	0	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	G	A	rs28392876	by1000genomes	TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr1:16946438G>A	ENST00000412962.1	-	0	1081																											GCCTTCCGCCGGGCCAGCAGC	0.672000													4	22					0	0	1	0	0
MFGE8	4240	broad.mit.edu	37	15	89453043	89453043	+	Missense_Mutation	SNP	G	G	A	rs34449331	byFrequency	TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr15:89453043G>A	ENST00000539437.1	-	3	297	c.161C>T	c.(160-162)gCg>gTg	p.A54V	MFGE8_ENST00000566497.1_Missense_Mutation_p.A62V|MFGE8_ENST00000268150.8_Missense_Mutation_p.A62V|MFGE8_ENST00000268151.7_Missense_Mutation_p.A62V|MFGE8_ENST00000542878.1_Intron|MFGE8_ENST00000559997.1_Intron			Q08431	MFGM_HUMAN	milk fat globule-EGF factor 8 protein	62	EGF-like.				angiogenesis|cell adhesion|interspecies interaction between organisms|single fertilization					breast(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(5)|ovary(1)|skin(2)|stomach(4)|upper_aerodigestive_tract(1)	22	Lung NSC(78;0.0392)|all_lung(78;0.077)					GTGGTTGCCCGCGTAGCCCTT	0.557000													5	130					0	0	1	0	0
TELO2	9894	broad.mit.edu	37	16	1550606	1550606	+	Missense_Mutation	SNP	A	A	G			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr16:1550606A>G	ENST00000262319.6	+	9	1466	c.1187A>G	c.(1186-1188)gAc>gGc	p.D396G		NM_016111.3	NP_057195.2	Q9Y4R8	TELO2_HUMAN	telomere maintenance 2	396						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding			NS(1)|endometrium(1)|kidney(5)|lung(9)|ovary(1)|skin(1)|urinary_tract(1)	19		Hepatocellular(780;0.219)				TGCCGCCTGGACAGTAGCCTG	0.701000													3	26					0	0	1	0	0
ATXN7	6314	broad.mit.edu	37	3	63981655	63981655	+	Silent	SNP	C	C	T			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr3:63981655C>T	ENST00000398590.3	+	12	2710	c.2157C>T	c.(2155-2157)tcC>tcT	p.S719S	ATXN7_ENST00000538065.1_Silent_p.S719S|ATXN7_ENST00000484332.1_Silent_p.S574S|ATXN7_ENST00000487717.1_Silent_p.S719S|ATXN7_ENST00000295900.6_Silent_p.S719S	NM_001177387.1	NP_001170858.1	O15265	ATX7_HUMAN	ataxin 7	719	Poly-Ser.|Ser-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding			NS(1)|breast(1)|endometrium(6)|kidney(2)|large_intestine(7)|lung(12)|prostate(2)|stomach(1)|urinary_tract(3)	35		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		Actcttcctcctcctcttcct	0.498000													4	70					0	0	1	0	0
AGAP10	728127	broad.mit.edu	37	10	47207813	47207813	+	Splice_Site	SNP	T	T	C			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr10:47207813T>C	ENST00000355232.3	-	5	3482	c.471_splice	c.e5+1	p.H157_splice	AGAP10_ENST00000452145.2_Splice_Site_p.H132_splice|RP11-144G6.12_ENST00000605970.1_RNA|AGAP10_ENST00000413193.2_Splice_Site_p.H228_splice					ArfGAP with GTPase domain, ankyrin repeat and PH domain 10									p.H228R(20)		endometrium(5)|kidney(3)|lung(1)|prostate(2)|urinary_tract(1)	12						TTTACTTACATGGTTTGTACA	0.294000													5	26					0	0	1	0	0
SDHAP1	0	broad.mit.edu	37	3	195690118	195690118	+	RNA	SNP	G	G	A			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr3:195690118G>A	ENST00000427841.1	-	0	2325					NR_003264.2																						GTGCAGAAGCGTATAAAGACA	0.463000													2	2					0	0	1	0	0
HSD17B7P2	0	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765		TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr10:38654432A>G	ENST00000494540.1	+	0	599					NR_003086.1																						TCATCTCGCAATGCAAGGAAA	0.453000													4	45					0	0	1	0	0
AC079776.3	0	broad.mit.edu	37	2	130697560	130697560	+	RNA	DEL	A	A	-			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr2:130697560delA	ENST00000450840.1	+	0	346																											TATCTTTTGGAAAAAGGCACC	0.403													2	4	---	---	---	---					
CNPY3	10695	broad.mit.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr6:42897358_42897360delTGC	ENST00000372836.4	+	1	421_423	c.50_52delTGC	c.(49-54)ttg>t	p.LL23del	CNPY3_ENST00000394142.3_In_Frame_Del_p.LL23del	NM_006586.3	NP_006577.2	Q9BT09	CNPY3_HUMAN	canopy FGF signaling regulator 3	23					innate immune response	endoplasmic reticulum		p.L25delL(1)		central_nervous_system(1)|endometrium(1)|lung(3)|ovary(1)	6	Colorectal(47;0.196)		all cancers(41;0.000954)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			CTTCTTCCCTtgctgctgctgct	0.695													3	6	---	---	---	---					
LMOD2	442721	broad.mit.edu	37	7	123301995	123301997	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr7:123301995_123301997delGAG	ENST00000458573.2	+	2	512_514	c.355_357delGAG	c.(355-357)del	p.E124del	LMOD2_ENST00000456238.2_Intron	NM_207163.1	NP_997046.1	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	124	Glu-rich.					cytoskeleton	actin binding|tropomyosin binding										AGTGTATACAgaggaggaggagg	0.409													2	4	---	---	---	---					
AGAP6	414189	broad.mit.edu	37	10	51748528	51748529	+	Frame_Shift_Ins	INS	-	-	C			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr10:51748528_51748529insC	ENST00000374056.4	+	1	451_452	c.53_54insC	c.(52-54)gcafs	p.A18fs	AGAP6_ENST00000412531.3_Frame_Shift_Ins_p.A18fs			C9IYN2	C9IYN2_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH domain 6	18					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			NS(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|liver(1)|lung(8)|prostate(3)|skin(1)|stomach(2)	29						CTCGAGTTTGACCAGCAGCAGG	0.604													4	5	---	---	---	---					
