Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SCNN1D	6339	hgsc.bcm.edu	37	1	1226692	1226692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	0	3	0	0
ATAD3B	83858	hgsc.bcm.edu	37	1	1431081	1431081	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CHD5	26038	bcgsc.ca;mdanderson.org	37	1	6194223	6194223	+	Missense_Mutation	SNP	G	G	A	rs200489902		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6534211	6534211	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	0	5	0	0
PER3	8863	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	7887490	7887490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
UBE4B	10277	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	10197164	10197164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MASP2	10747	hgsc.bcm.edu	37	1	11105562	11105562	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	16254767	16254767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MST1P2	11209	bcgsc.ca	37	1	16974510	16974510	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17982377	17982377	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MRTO4	51154	bcgsc.ca	37	1	19584004	19584004	+	Silent	SNP	G	G	A	rs1042380	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
VWA5B1	127731	broad.mit.edu;bcgsc.ca	37	1	20639404	20639404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21276548	21276548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	2	1	0	0
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24993380	24993380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	34	18	16	0	0
C1orf172	126695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27278436	27278436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC9A1	6548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27429001	27429001	+	Silent	SNP	G	G	A	rs144261466		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	1	4	0	0
ZSCAN20	7579	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33954759	33954759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370731	35370731	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	36935323	36935323	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39876656	39876656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39880128	39880128	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TMEM125	128218	hgsc.bcm.edu	37	1	43738798	43738798	+	Silent	SNP	C	C	T	rs139782659		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ARTN	9048	hgsc.bcm.edu	37	1	44402375	44402375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	48701436	48701436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
C8B	732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	57415368	57415368	+	Missense_Mutation	SNP	G	G	A	rs150146785	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62940939	62940939	+	Silent	SNP	G	G	A	rs202231787		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	3	1	0	0
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109273459	109273459	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MYBPHL	343263	ucsc.edu;bcgsc.ca	37	1	109839774	109839774	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CSF1	1435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110467421	110467421	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	113237220	113237220	+	Missense_Mutation	SNP	G	G	A	rs112768939		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	0	3	0	0
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu	37	1	115537601	115537601	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GDAP2	54834	hgsc.bcm.edu;bcgsc.ca	37	1	118439565	118439568	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAAA	GAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SRGAP2D	100996712	broad.mit.edu;bcgsc.ca	37	1	121115862	121115862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	10	9	1	0	0
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150531111	150531111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
HRNR	388697	bcgsc.ca	37	1	152185882	152185882	+	Silent	SNP	G	G	A	rs77559827		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
HRNR	388697	bcgsc.ca	37	1	152187474	152187474	+	Missense_Mutation	SNP	G	G	A	rs143987598	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TPM3	7170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154141804	154141804	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156908212	156908212	+	Missense_Mutation	SNP	G	G	A	rs141649554		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160100011	160100011	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161130593	161130593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	0	6	0	0
DUSP27	92235	bcgsc.ca	37	1	167096395	167096395	+	Missense_Mutation	SNP	C	C	T	rs76205550	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177245455	177245455	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	180914481	180914481	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ATP2B4	493	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203682343	203682343	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
SRGAP2D	100996712	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	206566076	206566076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	10	9	1	0	0
RASSF5	83593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206757996	206757996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
CR2	1380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PLXNA2	5362	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208390432	208390432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CAPN2	824	broad.mit.edu;bcgsc.ca	37	1	223947018	223947018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	11	0	0	0
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237791320	237791320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237811912	237811912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5139659	5139659	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	58	58	0	0	0
CALML3	810	bcgsc.ca	37	10	5567320	5567320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7768994	7768994	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16994285	16994285	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PTPLA	9200	hgsc.bcm.edu	37	10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	rs7895850	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GPR158	57512	hgsc.bcm.edu	37	10	25465062	25465062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PARD3	56288	broad.mit.edu	37	10	34663856	34663856	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BMS1	9790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43285924	43285924	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	7	0	0	0
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43622076	43622076	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	3	3	0	0
PTPN20B	26095	hgsc.bcm.edu	37	10	46584455	46584455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47087520	47087520	+	Missense_Mutation	SNP	G	G	A	rs115443559	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM35DP	439965	ucsc.edu;bcgsc.ca	37	10	47380373	47380373	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	50533416	50533416	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DRGX	644168	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50574313	50574313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55587306	55587306	+	Missense_Mutation	SNP	C	C	T	rs143538460		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61012730	61012730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70967601	70967601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	43	43	0	0	0
H2AFY2	55506	broad.mit.edu	37	10	71871407	71871407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	42	42	0	0	0
SPOCK2	9806	hgsc.bcm.edu	37	10	73848075	73848075	+	Silent	SNP	C	C	T	rs2306324		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
USP54	159195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75290071	75290071	+	Missense_Mutation	SNP	C	C	T	rs150999517		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZSWIM8	23053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75552240	75552240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	17	12	5	0	0
GHITM	27069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85909926	85909926	+	Silent	SNP	G	G	A	rs201995209		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	58	46	12	0	0
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	89469057	89469057	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
LCOR	84458	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98708916	98708916	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RRP12	23223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99129265	99129265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	5	1	0	0
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99145706	99145706	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PDZD7	79955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	102789754	102789754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104359294	104359294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105182858	105182858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
PDCD11	22984	broad.mit.edu;bcgsc.ca	37	10	105185215	105185215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
CALHM1	255022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105215444	105215444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CALHM3	119395	broad.mit.edu;bcgsc.ca	37	10	105233389	105233389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121586489	121586489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ADAM12	8038	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127755329	127755329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PWWP2B	170394	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	134219725	134219725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	60	16	44	0	0
RASSF7	8045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	562158	562158	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	16	16	0	0	0
PHRF1	57661	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	598468	598468	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	0	11	0	0
MUC2	4583	bcgsc.ca	37	11	1093410	1093410	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266085	1266085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MUC5B	727897	mdanderson.org	37	11	1266656	1266656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1267793	1267793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1269600	1269600	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1270826	1270826	+	Missense_Mutation	SNP	T	T	C	rs4046507	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1276467	1276467	+	Silent	SNP	A	A	G	rs56344012		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
OR51F2	119694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4843086	4843086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MICAL2	9645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12234878	12234878	+	Silent	SNP	G	G	A	rs138615174		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
INSC	387755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15262049	15262049	+	Missense_Mutation	SNP	G	G	A	rs201482506		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KCNJ11	3767	bcgsc.ca	37	11	17408630	17408630	+	Missense_Mutation	SNP	C	C	T	rs5215	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18339355	18339355	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LDHA	3939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18422479	18422479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	20075678	20075678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
LRRC4C	57689	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40136451	40136451	+	Silent	SNP	C	C	T	rs116285789	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	1	5	0	0
SLC35C1	55343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45832787	45832787	+	Silent	SNP	C	C	T	rs144046143		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	0	7	0	0
CRY2	1408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45892023	45892023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
ARHGAP1	392	broad.mit.edu	37	11	46703669	46703669	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46914637	46914637	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PACSIN3	29763	hgsc.bcm.edu	37	11	47202120	47202120	+	Silent	SNP	G	G	A	rs2291445	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	0	4	0	0
PTPRJ	5795	broad.mit.edu;bcgsc.ca	37	11	48161171	48161171	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466653	57466653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	8	0	8	0	0
GLYATL1	92292	broad.mit.edu;bcgsc.ca	37	11	58723211	58723211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PRPF19	27339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60666651	60666651	+	Silent	SNP	G	G	A	rs147483370	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	16	1	15	0	0
AHNAK	79026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62298815	62298815	+	Missense_Mutation	SNP	G	G	A	rs201304148	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62561845	62561845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	67	34	33	0	0
SLC22A8	9376	bcgsc.ca	37	11	62782278	62782278	+	Silent	SNP	C	C	T	rs4149180	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
C11orf84	144097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63594410	63594410	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64368361	64368361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu	37	11	64572093	64572093	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
POLA2	23649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65034978	65034978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
PELI3	246330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66243098	66243098	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71718457	71718457	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	51	5	46	0	0
PHOX2A	401	hgsc.bcm.edu	37	11	71951242	71951242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75115215	75115215	+	Missense_Mutation	SNP	G	G	A	rs11546214	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	925	70	855	0	0
MYO7A	4647	bcgsc.ca	37	11	76912590	76912590	+	Silent	SNP	C	C	T	rs80033599	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
INTS4	92105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77614597	77614597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KCTD21	283219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77885166	77885166	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CCDC83	220047	broad.mit.edu	37	11	85597253	85597253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC36A4	120103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92881964	92881964	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93826774	93826774	+	Missense_Mutation	SNP	G	G	A	rs200108606		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FUT4	2526	hgsc.bcm.edu	37	11	94278062	94278062	+	Missense_Mutation	SNP	A	A	G	rs2230273	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111229514	111229514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
HSPB2-C11orf52	100528019	ucsc.edu;bcgsc.ca	37	11	111789615	111789615	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113860305	113860305	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NXPE4	54827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114453402	114453402	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TMPRSS4	56649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117984057	117984057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CD3G	917	hgsc.bcm.edu	37	11	118220583	118220583	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118495742	118495742	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
DDX6	1656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118635947	118635947	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
CXCR5	643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118764716	118764716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
POU2F3	25833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	120175859	120175859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GRAMD1B	57476	broad.mit.edu	37	11	123483504	123483504	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123993793	123993793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
OR8D2	283160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124189576	124189576	+	Missense_Mutation	SNP	G	G	A	rs151287996		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PKNOX2	63876	broad.mit.edu	37	11	125255595	125255595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
WNT5B	81029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1742040	1742040	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	1988971	1988971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2019113	2019113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TSPAN9	10867	bcgsc.ca	37	12	3390495	3390495	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ANO2	57101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	5724430	5724430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GPR162	27239	hgsc.bcm.edu;broad.mit.edu	37	12	6934685	6934685	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
C1R	715	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7187965	7187965	+	Silent	SNP	C	C	T	rs147540938	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	979	701	278	0	0
CLEC4A	50856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	8290774	8290774	+	Missense_Mutation	SNP	G	G	A	rs200191238		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
DDX11	1663	broad.mit.edu;bcgsc.ca	37	12	31254784	31254784	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	12	12	0	0	0
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40422282	40422282	+	Missense_Mutation	SNP	G	G	A	rs200980396	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
VDR	7421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48249477	48249477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
OR8S1	341568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48921823	48921823	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
WNT1	7471	hgsc.bcm.edu	37	12	49374348	49374348	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49434492	49434492	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KCNH3	23416	hgsc.bcm.edu	37	12	49943990	49943990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	9	9	0	0	0
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757424	54757424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PA2G4	5036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56504465	56504465	+	Silent	SNP	G	G	A	rs145895424		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
MYO1A	4640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57432600	57432600	+	Missense_Mutation	SNP	G	G	A	rs141039063		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SHMT2	6472	ucsc.edu;bcgsc.ca	37	12	57624758	57624758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
TMBIM4	51643	hgsc.bcm.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KCNC2	3747	ucsc.edu;bcgsc.ca	37	12	75444415	75444415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	83290288	83290288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85554403	85554403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SCYL2	55681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100732792	100732792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	40	36	4	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109613959	109613959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
OAS2	4939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113442751	113442751	+	Missense_Mutation	SNP	G	G	A	rs143746502		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
OAS2	4939	broad.mit.edu;bcgsc.ca	37	12	113442852	113442852	+	Silent	SNP	C	C	T	rs186647423	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MAP1LC3B2	643246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117013775	117013775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
C12orf49	79794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117160928	117160928	+	Missense_Mutation	SNP	G	G	A	rs149801903		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CAMKK2	10645	hgsc.bcm.edu	37	12	121711941	121711941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
RHOF	54509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	122219074	122219074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	27	25	2	0	0
SETD1B	23067	broad.mit.edu	37	12	122252825	122252825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SNRNP35	11066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123950559	123950559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	50	43	7	0	0
DNAH10	196385	broad.mit.edu	37	12	124417938	124417938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124829305	124829305	+	Missense_Mutation	SNP	A	A	T	rs75902515		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	20	8	12	0	0
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130184571	130184571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EP400	57634	bcgsc.ca	37	12	132547096	132547096	+	Silent	SNP	G	G	A	rs74479394		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	20	17	3	0	0
POLE	5426	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133249853	133249853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24825999	24825999	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	45147753	45147753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95840746	95840746	+	Silent	SNP	G	G	A	rs150945397		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ING1	3621	bcgsc.ca	37	13	111371922	111371922	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	16	1	15	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111938538	111938538	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	19	19	0	0	0
MCF2L	23263	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113741680	113741680	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
TFDP1	7027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114292172	114292172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	24	20	4	0	0
GRK1	6011	broad.mit.edu	37	13	114325865	114325865	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MMP14	4323	hgsc.bcm.edu	37	14	23315160	23315160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	16	10	6	0	0
MMP14	4323	broad.mit.edu	37	14	23315199	23315199	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EFS	10278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23828979	23828979	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	33014537	33014537	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35231352	35231352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	9	2	0	0
MIS18BP1	55320	hgsc.bcm.edu	37	14	45716019	45716019	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NIN	51199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	51237214	51237215	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64644168	64644168	+	Silent	SNP	C	C	T	rs202141038		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	2	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64680991	64680991	+	Missense_Mutation	SNP	G	G	A	rs150629598	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
ACTN1	87	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69371417	69371417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
GALNT16	57452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	69792727	69792727	+	Missense_Mutation	SNP	G	G	A	rs138742665	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71575457	71575457	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	18	17	1	0	0
ACOT2	10965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74040291	74040291	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77845328	77845328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
ZC3H14	79882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89069362	89069362	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	13	7	6	0	0
PSMC1	5700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	90730133	90730137	+	Frame_Shift_Del	DEL	TTTCA	TTTCA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TTTCA	TTTCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PPP4R4	57718	broad.mit.edu;ucsc.edu	37	14	94741742	94741742	+	Silent	SNP	C	C	T	rs114442446	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95884311	95884311	+	Missense_Mutation	SNP	G	G	A	rs142276866	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DEGS2	123099	hgsc.bcm.edu	37	14	100615855	100615855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102793112	102793112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	1	2	0	0
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104205313	104205313	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	21	6	15	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104642489	104642489	+	Missense_Mutation	SNP	G	G	T	rs117573425	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	9	5	4	0	0
HERC2P2	400322	bcgsc.ca	37	15	23299744	23299744	+	RNA	SNP	C	C	T	rs200571380	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	19	10	9	0	0
CASC5	57082	bcgsc.ca	37	15	40914772	40914772	+	Silent	SNP	C	C	T	rs11855334	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SERF2-C15ORF63	0	ucsc.edu;bcgsc.ca	37	15	44093844	44093844	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	8	4	4	0	0
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63433897	63433897	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78466041	78466041	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051801	79051801	+	Missense_Mutation	SNP	C	C	A	rs201472223		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	21	21	0	0	0
AP3B2	8120	bcgsc.ca	37	15	83328678	83328678	+	Missense_Mutation	SNP	C	C	T	rs200505090		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
BNC1	646	broad.mit.edu	37	15	83932513	83932513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ACAN	176	bcgsc.ca	37	15	89398631	89398631	+	Missense_Mutation	SNP	T	T	A	rs938609	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
POLG	5428	bcgsc.ca	37	15	89868870	89868870	+	Missense_Mutation	SNP	G	G	A	rs113994096	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
CRTC3	64784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	91184391	91184391	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	4	3	0	0
SSTR5	6755	hgsc.bcm.edu	37	16	1129594	1129594	+	Silent	SNP	G	G	A	rs201314089		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BAIAP3	8938	broad.mit.edu;bcgsc.ca	37	16	1393394	1393394	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
IGFALS	3483	hgsc.bcm.edu	37	16	1841949	1841949	+	Missense_Mutation	SNP	C	C	T	rs199977317		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TBL3	10607	hgsc.bcm.edu	37	16	2025627	2025627	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	8	5	3	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
PRSS27	83886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2763556	2763556	+	Missense_Mutation	SNP	C	C	T	rs149957191	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4558130	4558130	+	Silent	SNP	C	C	T	rs186971432		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	64	36	28	0	0
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
SMG1	23049	broad.mit.edu	37	16	18887699	18887699	+	Missense_Mutation	SNP	T	T	C	rs1136817	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	15	12	3	0	0
SYT17	51760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19194969	19194969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	0	6	0	0
LOC653786	0	broad.mit.edu	37	16	22579569	22579572	+	RNA	DEL	CATC	CATC	-	rs71860256		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOC653786	0	broad.mit.edu	37	16	22580309	22580309	+	RNA	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ARHGAP17	55114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24950845	24950845	+	Missense_Mutation	SNP	C	C	T	rs145791095	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	3	1	0	0
LCMT1	51451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	25151548	25151548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	16	11	5	0	0
KIAA0556	23247	broad.mit.edu;bcgsc.ca	37	16	27782957	27782957	+	Silent	SNP	G	G	A	rs202124589		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu	37	16	28847350	28847350	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TAOK2	9344	broad.mit.edu;bcgsc.ca	37	16	29994575	29994575	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	11	0	0	0
INO80E	283899	hgsc.bcm.edu	37	16	30016621	30016621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	22	13	9	0	0
PRSS8	5652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31144689	31144689	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890950	32890950	+	RNA	SNP	A	A	G	rs689706	bycluster;by2hit2allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RNU6-76	100873777	bcgsc.ca	37	16	33527812	33527812	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48155704	48155704	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LONP2	83752	hgsc.bcm.edu	37	16	48278491	48278491	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
SNX20	124460	hgsc.bcm.edu	37	16	50707433	50707433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50744753	50744753	+	Missense_Mutation	SNP	C	C	T	rs104895427		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67765468	67765468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70190402	70190402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
VAC14	55697	broad.mit.edu;bcgsc.ca	37	16	70732653	70732653	+	Missense_Mutation	SNP	G	G	A	rs145938865	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	19	19	0	0	0
DHODH	1723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72057466	72057466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	12	6	6	0	0
CTRB2	440387	broad.mit.edu;bcgsc.ca	37	16	75238144	75238144	+	Missense_Mutation	SNP	C	C	T	rs201069805		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TMEM231	79583	broad.mit.edu;bcgsc.ca	37	16	75575345	75575345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84129260	84129260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
ZNF469	84627	broad.mit.edu;bcgsc.ca	37	16	88496389	88496389	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	88706308	88706308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
ACSF3	197322	ucsc.edu	37	16	89167094	89167094	+	Missense_Mutation	SNP	T	T	C	rs7188200	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
ANKRD11	29123	broad.mit.edu	37	16	89345709	89345709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	34	16	18	0	0
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89352532	89352532	+	Silent	SNP	C	C	T	rs149525788	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	16	8	8	0	0
MC1R	4157	hgsc.bcm.edu	37	16	89986317	89986317	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	90	48	42	0	0
RPH3AL	9501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	169309	169309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1371412	1371412	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GSG2	83903	hgsc.bcm.edu	37	17	3627663	3627663	+	Missense_Mutation	SNP	G	G	A	rs55991903		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
VMO1	284013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4688850	4688850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
ASGR1	432	hgsc.bcm.edu	37	17	7077106	7077106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
SPEM1	374768	broad.mit.edu;bcgsc.ca	37	17	7324353	7324353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	bycluster	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
ALOX12B	242	hgsc.bcm.edu;bcgsc.ca	37	17	7982767	7982767	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MYH10	4628	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8424545	8424545	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10614312	10614312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
DNAH9	1770	bcgsc.ca	37	17	11532835	11532835	+	Silent	SNP	A	A	G	rs9895535	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	11778483	11778483	+	Missense_Mutation	SNP	C	C	T	rs145738103	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DNAH9	1770	broad.mit.edu	37	17	11845741	11845741	+	Missense_Mutation	SNP	G	G	A	rs149812805	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CCDC144C	348254	broad.mit.edu;bcgsc.ca	37	17	20224697	20224697	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LGALS9B	284194	broad.mit.edu	37	17	20363687	20363687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KCNJ18	100134444	ucsc.edu	37	17	21319943	21319943	+	Missense_Mutation	SNP	A	A	G	rs5021699	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MIR144	406936	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27188561	27188561	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LHX1	3975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35298051	35298051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOC440434	0	bcgsc.ca	37	17	36352388	36352388	+	RNA	SNP	G	G	A	rs2610288		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOC440434	0	bcgsc.ca	37	17	36352402	36352402	+	RNA	SNP	C	C	T	rs2610289		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37934013	37934013	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RAPGEFL1	51195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38345578	38345578	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	1	2	0	0
SMARCE1	6605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38786977	38786977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39521212	39521212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KRT31	3881	bcgsc.ca	37	17	39551197	39551197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39623234	39623234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KRT14	3861	broad.mit.edu	37	17	39743071	39743071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KRT17	3872	broad.mit.edu;bcgsc.ca	37	17	39775873	39775873	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
STAT5B	6777	hgsc.bcm.edu;bcgsc.ca	37	17	40364022	40364023	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CNTNAP1	8506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40838076	40838076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
WNK4	65266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40948205	40948205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41004636	41004636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42170066	42170066	+	Silent	SNP	G	G	A	rs199980075		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	8	0	8	0	0
TTLL6	284076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46878650	46878650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
ZNF652	22834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47395005	47395005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
YPEL2	388403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57430826	57430826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61780974	61780974	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	15	11	4	0	0
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72843589	72843589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	22	7	15	0	0
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73750779	73750779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
ZACN	353174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74077421	74077421	+	Missense_Mutation	SNP	G	G	A	rs143316623	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	84	73	11	0	0
TNRC6C	57690	bcgsc.ca	37	17	76045635	76045635	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76118720	76118720	+	Missense_Mutation	SNP	C	C	T	rs150505551	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
CYTH1	9267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76695039	76695039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RPTOR	57521	bcgsc.ca	37	17	78599562	78599562	+	Silent	SNP	C	C	G	rs17848685	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BAIAP2	10458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79031712	79031712	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	2	3	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC38A10	124565	hgsc.bcm.edu	37	17	79219637	79219637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	53	5	47	1	0
DUS1L	64118	bcgsc.ca;mdanderson.org	37	17	80019852	80019852	+	Missense_Mutation	SNP	G	G	A	rs138482688		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EMILIN2	84034	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2891551	2891551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29104699	29104699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC25A52	147407	broad.mit.edu;bcgsc.ca	37	18	29340269	29340269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43529494	43529494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MBD1	4152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47796100	47796100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	46	17	29	0	0
MBD1	4152	bcgsc.ca	37	18	47801792	47801792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CNDP2	55748	bcgsc.ca	37	18	72178161	72178161	+	Silent	SNP	T	T	C	rs2278159	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
SHC2	25759	hgsc.bcm.edu;broad.mit.edu	37	19	422360	422360	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SHC2	25759	hgsc.bcm.edu	37	19	436677	436677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CFD	1675	hgsc.bcm.edu	37	19	863169	863169	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1004687	1004687	+	Missense_Mutation	SNP	T	T	C	rs12978900	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1043419	1043419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
C19orf24	55009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1277286	1277286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
REEP6	92840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1496349	1496349	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	181	143	37	1	0
FZR1	51343	hgsc.bcm.edu	37	19	3532525	3532525	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5206812	5206812	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	103	77	26	0	0
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6833562	6833562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
INSR	3643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7267587	7267587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
CAMSAP3	57662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7682925	7682925	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	120	112	8	0	0
CD320	51293	hgsc.bcm.edu	37	19	8369919	8369921	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CD320	51293	hgsc.bcm.edu	37	19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	rs2232775	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	24	1	23	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	8	1	7	0	0
ACTL9	284382	hgsc.bcm.edu	37	19	8807994	8807994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9049154	9049154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
COL5A3	50509	hgsc.bcm.edu	37	19	10077378	10077378	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
EIF3G	8666	broad.mit.edu	37	19	10227826	10227826	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10476463	10476463	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	16	10	6	0	0
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12805414	12805414	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TNPO2	30000	broad.mit.edu;bcgsc.ca	37	19	12816346	12816346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	25	23	2	0	0
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13356010	13356010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13370425	13370425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15276714	15276714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
NOTCH3	4854	ucsc.edu	37	19	15292437	15292437	+	Silent	SNP	T	T	C	rs1043997	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
OR10H1	26539	bcgsc.ca	37	19	15918802	15918802	+	Missense_Mutation	SNP	C	C	G	rs4808383	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
C19orf44	84167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16611814	16611814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16986968	16986968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	45	21	24	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17283599	17283599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
ANO8	57719	hgsc.bcm.edu	37	19	17435647	17435647	+	Silent	SNP	G	G	A	rs150818557	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	28	17	11	0	0
ANO8	57719	broad.mit.edu;bcgsc.ca	37	19	17441307	17441307	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
COLGALT1	79709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17679361	17679361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18279340	18279340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	48	27	20	0	1
ISYNA1	51477	broad.mit.edu	37	19	18546481	18546481	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	12	12	0	0	0
FKBP8	23770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18650417	18650417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	144	85	59	0	0
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19360612	19360612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZNF826P	664701	broad.mit.edu;bcgsc.ca	37	19	20591765	20591765	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21720662	21720662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
GPATCH1	55094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33616095	33616095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOC400685	0	bcgsc.ca	37	19	35316611	35316611	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOC100506469	0	bcgsc.ca	37	19	36034031	36034031	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
MLL4	8085	broad.mit.edu;bcgsc.ca	37	19	36217156	36217156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	14	14	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36222925	36222925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	30	18	12	0	0
LRFN3	79414	hgsc.bcm.edu	37	19	36430696	36430696	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOC644189	0	bcgsc.ca	37	19	36912983	36912983	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZNF781	163115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38160733	38160733	+	Missense_Mutation	SNP	C	C	T	rs12460961	byhapmap	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	1	3	0	0
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38591715	38591715	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DPF1	8193	hgsc.bcm.edu	37	19	38713189	38713189	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RYR1	6261	broad.mit.edu	37	19	38966036	38966036	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu	37	19	38993359	38993359	+	Silent	SNP	G	G	A	rs201827284		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PAK4	10298	hgsc.bcm.edu	37	19	39663757	39663757	+	Missense_Mutation	SNP	G	G	A	rs56099436		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	14	6	8	0	0
SYCN	342898	hgsc.bcm.edu	37	19	39694831	39694831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LRFN1	57622	hgsc.bcm.edu	37	19	39805167	39805167	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	1	4	0	0
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40412003	40412003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FCGBP	8857	hgsc.bcm.edu	37	19	40430566	40430566	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
B3GNT8	374907	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41931793	41931793	+	Silent	SNP	G	G	A	rs147647792		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
IRGC	56269	hgsc.bcm.edu	37	19	44223766	44223766	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZNF296	162979	broad.mit.edu	37	19	45578983	45578983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KLC3	147700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45852157	45852157	+	Missense_Mutation	SNP	G	G	A	rs190310418	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	5	2	0	0
EML2	24139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46129994	46129994	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DMWD	1762	hgsc.bcm.edu	37	19	46289388	46289388	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FKRP	79147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47259950	47259950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	15	4	11	0	0
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47571027	47571027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	3	4	0	0
DHX34	9704	broad.mit.edu;bcgsc.ca	37	19	47856391	47856391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	7	0	0	0
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48204610	48204610	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	33	14	19	0	0
LMTK3	114783	broad.mit.edu;bcgsc.ca	37	19	49013775	49013775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	2	4	0	0
BAX	581	hgsc.bcm.edu;bcgsc.ca	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PPFIA3	8541	broad.mit.edu	37	19	49641518	49641518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
ZNF473	25888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50548675	50548675	+	Silent	SNP	C	C	T	rs146105171		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	1	4	0	0
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52658977	52658977	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	44	35	9	0	0
ZNF701	55762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53086056	53086056	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53668192	53668192	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
NLRP12	91662	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54314363	54314363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54782326	54782326	+	Missense_Mutation	SNP	C	C	T	rs202223934		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KIR3DX1	90011	bcgsc.ca	37	19	55045255	55045255	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55144512	55144512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KIR2DL4	3805	hgsc.bcm.edu	37	19	55324635	55324635	+	Silent	SNP	T	T	C	rs649216	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM71E2	284418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55872251	55872251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56042650	56042650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FIZ1	84922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56105009	56105009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57066397	57066397	+	Missense_Mutation	SNP	G	G	A	rs139300625		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	5	1	0	0
ZNF264	9422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57723746	57723746	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
ZNF805	390980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57765484	57765484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58004983	58004983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	10	8	2	0	0
ZNF135	7694	broad.mit.edu	37	19	58578302	58578302	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	6	0	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58600183	58600183	+	Missense_Mutation	SNP	G	G	A	rs73058515	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	3	3	0	0
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3196229	3196229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	19	16	3	0	0
TRIM54	57159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27505759	27505759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FOSL2	2355	ucsc.edu;bcgsc.ca	37	2	28627094	28627094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	1	4	0	0
FOXN2	3344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48602109	48602109	+	Missense_Mutation	SNP	G	G	A	rs200645756		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	49244660	49244660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NRXN1	9378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50149257	50149257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EML6	400954	hgsc.bcm.edu;bcgsc.ca	37	2	55176077	55176077	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61571010	61571010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74273495	74273495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
WDR54	84058	broad.mit.edu	37	2	74649393	74649393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	9	9	0	0	0
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	121744055	121744055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	0	4	0	0
PROC	5624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128185950	128185950	+	Missense_Mutation	SNP	C	C	T	rs121918154		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CCDC74B	91409	bcgsc.ca	37	2	130897620	130897620	+	Missense_Mutation	SNP	A	A	G	rs76485676	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	167	0	167	0	0
POTEJ	653781	bcgsc.ca	37	2	131414645	131414645	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	157186454	157186454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ERMN	57471	broad.mit.edu;bcgsc.ca	37	2	158182171	158182171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KCNH7	90134	broad.mit.edu;bcgsc.ca	37	2	163302907	163302907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SCN3A	6328	broad.mit.edu;bcgsc.ca	37	2	165947568	165947568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SCN7A	6332	broad.mit.edu	37	2	167298121	167298121	+	Silent	SNP	G	G	A	rs181976611		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
COL5A2	1290	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	189898939	189898939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SDPR	8436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192700699	192700699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
SPATS2L	26010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201342532	201342532	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	5	2	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	81	80	1	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	67	67	0	0	0
MDH1B	130752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207615686	207615686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217300105	217300105	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	0	3	0	0
PLCD4	84812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219498432	219498432	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	0	3	0	0
SLC4A3	6508	bcgsc.ca	37	2	220505265	220505265	+	Silent	SNP	T	T	C	rs684428	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	242	242	0	0	0
SCG2	7857	ucsc.edu	37	2	224462285	224462285	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	20	16	4	0	0
AGFG1	3267	hgsc.bcm.edu;bcgsc.ca	37	2	228384741	228384744	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAAA	GAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
UGT1A3	54659	hgsc.bcm.edu;bcgsc.ca	37	2	234638283	234638283	+	Frame_Shift_Del	DEL	T	T	-	rs45586035		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KLHL30	377007	broad.mit.edu	37	2	239059485	239059485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ANO7	50636	bcgsc.ca	37	2	242157228	242157228	+	Silent	SNP	G	G	C	rs78605785	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CXXC11	285093	hgsc.bcm.edu	37	2	242814035	242814035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PDYN	5173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1961122	1961122	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FASTKD5	60493	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3127458	3127458	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	25	0	25	0	0
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3734755	3734755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	23	19	4	0	0
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	13695562	13695563	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18424085	18424085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CST2	1470	bcgsc.ca	37	20	23805918	23805918	+	Nonsense_Mutation	SNP	G	G	A	rs6049157	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PLAGL2	5326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30785207	30785207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ASXL1	171023	broad.mit.edu	37	20	31022442	31022442	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOC149950	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	31189498	31189498	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34778675	34778675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	24	1	23	0	0
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39793679	39793679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	14	5	9	0	0
CHD6	84181	broad.mit.edu	37	20	40074318	40074318	+	Silent	SNP	G	G	A	rs139410145	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
MYBL2	4605	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42328526	42328526	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CTSA	5476	broad.mit.edu	37	20	44526395	44526395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	431	417	14	0	0
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61522425	61522425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33065781	33065781	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35208767	35208767	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	3	2	0	0
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	38098480	38098480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DSCR6	53820	ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38390297	38390297	+	Silent	SNP	C	C	T	rs138756839	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	40667746	40667746	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
B3GALT5	10317	ucsc.edu;bcgsc.ca	37	21	41033159	41033159	+	Missense_Mutation	SNP	G	G	A	rs144752439		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45736189	45736189	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	12	9	3	0	0
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45744758	45744758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	46	30	16	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOC642852	0	broad.mit.edu	37	21	46713303	46713303	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46900432	46900432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PRMT2	3275	broad.mit.edu;bcgsc.ca	37	21	48068519	48068519	+	Silent	SNP	G	G	A	rs150978784		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	18	16	2	0	0
CECR5	27440	hgsc.bcm.edu	37	22	17640022	17640022	+	Silent	SNP	G	G	C	rs11550530		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PRODH	5625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	18900804	18900804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
GUSBP11	91316	bcgsc.ca	37	22	24057315	24057315	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	1	2	0	0
POM121L9P	29774	ucsc.edu;bcgsc.ca	37	22	24659621	24659621	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
POM121L9P	29774	ucsc.edu;bcgsc.ca	37	22	24659623	24659623	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194988	28194988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TTC28	23331	hgsc.bcm.edu;broad.mit.edu	37	22	28389367	28389367	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29444383	29444383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC35E4	339665	hgsc.bcm.edu	37	22	31032952	31032952	+	Missense_Mutation	SNP	T	T	G	rs150781327	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	0	4	0	0
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37466579	37466579	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BAIAP2L2	80115	broad.mit.edu;bcgsc.ca	37	22	38482353	38482394	+	In_Frame_Del	DEL	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39966861	39966861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	40661638	40661638	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FBLN1	2192	bcgsc.ca	37	22	45959041	45959041	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	14	13	1	0	0
MLC1	23209	hgsc.bcm.edu	37	22	50502469	50502469	+	Silent	SNP	A	A	G	rs11568190	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
THUMPD3	25917	bcgsc.ca	37	3	9422210	9422210	+	Silent	SNP	T	T	C	rs2596916	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14552686	14552686	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NR2C2	7182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15071882	15071882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	2	3	0	0
CTDSPL	10217	bcgsc.ca	37	3	38017252	38017252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39180220	39180220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	0	7	0	0
EIF1B-AS1	440952	bcgsc.ca	37	3	40291690	40291690	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NKTR	4820	bcgsc.ca	37	3	42660604	42660604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42771959	42771959	+	Missense_Mutation	SNP	C	C	T	rs141485184	by1000genomes;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47036641	47036641	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
KIF9	64147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47312930	47312930	+	Missense_Mutation	SNP	G	G	A	rs201201745		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47465429	47465429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	G	C	rs75404373	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	245	245	0	0	0
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49694175	49694175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SEMA3G	56920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52475300	52475300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GNL3	26354	bcgsc.ca	37	3	52727736	52727736	+	Silent	SNP	A	A	G	rs4532127	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	45	45	0	0	0
MAGI1	9223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	65365023	65365023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	1	2	0	0
NXPE3	91775	broad.mit.edu;bcgsc.ca	37	3	101520735	101520735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
PLCXD2	257068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111432936	111432936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TAGLN3	29114	broad.mit.edu	37	3	111718285	111718285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121341510	121341510	+	Missense_Mutation	SNP	G	G	A	rs143415272		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129370538	129370538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132407633	132407633	+	Missense_Mutation	SNP	C	C	T	rs150867534		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134322975	134322975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
IL20RB	53833	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136701009	136701009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC9A9	285195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142987727	142987727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151164728	151164728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164907802	164907802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MYNN	55892	broad.mit.edu;bcgsc.ca	37	3	169500336	169500336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
DCUN1D1	54165	bcgsc.ca	37	3	182681740	182681740	+	Silent	SNP	C	C	T	rs4859146	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
CHRD	8646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	184100913	184100913	+	Missense_Mutation	SNP	G	G	A	rs201032668		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
ETV5	2119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185766567	185766567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	1	3	0	0
SDHAP2	727956	bcgsc.ca	37	3	195395347	195395347	+	RNA	SNP	G	G	A	rs78747381	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM157A	728262	bcgsc.ca	37	3	197880129	197880129	+	Missense_Mutation	SNP	T	T	C	rs28554473		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM157A	728262	bcgsc.ca	37	3	197880139	197880139	+	Missense_Mutation	SNP	A	A	G	rs1820791		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
UVSSA	57654	broad.mit.edu	37	4	1373989	1373989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	1374002	1374002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
MFSD10	10227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2933798	2933798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	47	37	10	0	0
ADRA2C	152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3768709	3768709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
CRMP1	1400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	5844857	5844857	+	Missense_Mutation	SNP	G	G	A	rs142255876		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	5	1	0	0
SORCS2	57537	broad.mit.edu	37	4	7716056	7716056	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7738821	7738821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10086077	10086077	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17636715	17636715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
SLIT2	9353	broad.mit.edu;bcgsc.ca	37	4	20469421	20469421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PPARGC1A	10891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	23803958	23803958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CCDC149	91050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24821571	24821571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	17	4	13	0	0
FRYL	285527	hgsc.bcm.edu;bcgsc.ca	37	4	48555392	48555394	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55973911	55973911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CLOCK	9575	hgsc.bcm.edu	37	4	56336954	56336954	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
HNRPDL	9987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83347682	83347682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	119	79	39	1	0
SEC31A	22872	hgsc.bcm.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PKD2	5311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88996108	88996108	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM13A	10144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89670963	89670963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138442414	138442414	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	5	6	0	0
MAP9	79884	broad.mit.edu	37	4	156273869	156273869	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GUCY1B3	2983	broad.mit.edu;bcgsc.ca	37	4	156680986	156680986	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	123	123	0	0	0
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1339097	1339097	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
ADAMTS16	170690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5146290	5146290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TRIO	7204	hgsc.bcm.edu	37	5	14488142	14488142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	8	3	5	0	0
MYO10	4651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16701081	16701081	+	Silent	SNP	C	C	T	rs150139256	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
DROSHA	29102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31526976	31526976	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
C1QTNF3	114899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34043081	34043081	+	Silent	SNP	G	G	A	rs143587337		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC38A9	153129	broad.mit.edu	37	5	54941671	54941671	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56189493	56189493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
ELOVL7	79993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	60062450	60062450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ELOVL7	79993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60067887	60067887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
ZSWIM6	57688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60839386	60839386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65118697	65118697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74028894	74028894	+	Missense_Mutation	SNP	G	G	A	rs139234343		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	12	11	1	0	0
THBS4	7060	hgsc.bcm.edu	37	5	79331430	79331430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SERINC5	256987	broad.mit.edu	37	5	79473787	79473787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	11	0	0	0
NR2F1	7025	bcgsc.ca	37	5	92924033	92924033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131014837	131014837	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133896521	133896521	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	133896569	133896569	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	12	2	10	0	0
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	135692634	135692634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SIL1	64374	broad.mit.edu	37	5	138282960	138282960	+	Missense_Mutation	SNP	C	C	T	rs192255604		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	219	213	6	0	0
TMEM173	340061	ucsc.edu;bcgsc.ca	37	5	138861257	138861257	+	Silent	SNP	C	C	T	rs149842998	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
WDR55	54853	hgsc.bcm.edu;bcgsc.ca	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140181912	140181912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
PCDHA7	56141	broad.mit.edu;bcgsc.ca	37	5	140214422	140214422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PCDHA13	56136	hgsc.bcm.edu	37	5	140263870	140263870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PCDHB5	26167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140515676	140515676	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
PCDHB12	56124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140589396	140589396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	rs76927815		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	46	41	5	0	0
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140865109	140865109	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141051181	141051181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
SCGB3A2	117156	bcgsc.ca	37	5	147261610	147261610	+	Silent	SNP	G	G	A	rs34212847	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CSF1R	1436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149435889	149435889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	159781908	159781908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NUDCD2	134492	hgsc.bcm.edu	37	5	162886888	162886888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
TENM2	57451	broad.mit.edu;bcgsc.ca	37	5	167643865	167643865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FGFR4	2264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176520335	176520335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176638620	176638620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177669111	177669111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
RNF130	55819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179394008	179394008	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PXDC1	221749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	3738356	3738356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12120284	12120284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327865	16327867	+	In_Frame_Del	DEL	TGC	TGC	-	rs66949327	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327906	16327906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
VARS2	57176	bcgsc.ca	37	6	30890885	30890885	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31323953	31323960	+	Frame_Shift_Del	DEL	CCAGCTTG	CCAGCTTG	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CCAGCTTG	CCAGCTTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	31759412	31759412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
CYP21A2	1589	bcgsc.ca	37	6	32007865	32007865	+	Silent	SNP	T	T	C	rs55695018		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1106	7	1098	1	0
SYNGAP1	8831	broad.mit.edu;bcgsc.ca	37	6	33415649	33415649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	1	2	0	0
C6orf106	64771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34558353	34558353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
SRPK1	6732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35837637	35837637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36175153	36175153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
MDGA1	266727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37619964	37619964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DAAM2	23500	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39835483	39835483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
TREM1	54210	bcgsc.ca	37	6	41243926	41243926	+	Missense_Mutation	SNP	G	G	C	rs2234245	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CRISP2	7180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49660590	49660590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PAQR8	85315	broad.mit.edu	37	6	52268989	52268991	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EYS	346007	broad.mit.edu	37	6	66005970	66005970	+	Silent	SNP	G	G	A	rs9345601	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70423650	70423650	+	Missense_Mutation	SNP	C	C	T	rs143758103		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
C6orf57	135154	bcgsc.ca	37	6	71289189	71289189	+	Missense_Mutation	SNP	A	A	G	rs1048886	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	11	0	0	0
DPPA5	340168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74063857	74063857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BEND3	57673	broad.mit.edu;bcgsc.ca	37	6	107390069	107390069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
TRAF3IP2-AS1	643749	broad.mit.edu	37	6	111922503	111922503	+	RNA	SNP	G	G	C	rs76228616	byfrequency;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
VNN3	55350	ucsc.edu;bcgsc.ca	37	6	133052532	133052532	+	RNA	SNP	C	C	T	rs45590137	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PLAGL1	5325	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	144269186	144269186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	151672365	151672365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TBP	6908	bcgsc.ca	37	6	170871058	170871058	+	Silent	SNP	G	G	A	rs113440919		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	155	155	0	0	0
ELFN1	392617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	1784620	1784620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4799094	4799094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	3	1	0	0
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	5352513	5352515	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GRID2IP	392862	ucsc.edu;bcgsc.ca	37	7	6561142	6561142	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21646323	21646323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
BLVRA	644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43827548	43827548	+	Missense_Mutation	SNP	G	G	A	rs138715080	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	26	18	8	0	0
POLM	27434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44114081	44114081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44747186	44747186	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
H2AFV	94239	ucsc.edu	37	7	44874113	44874113	+	Missense_Mutation	SNP	T	T	C	rs1802437	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	160	159	1	0	0
PKD1L1	168507	bcgsc.ca	37	7	47840387	47840387	+	Missense_Mutation	SNP	C	C	T	rs13231277	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NUPR1L	389493	hgsc.bcm.edu	37	7	56183746	56183760	+	In_Frame_Del	DEL	GCTGGCGCTGGCGGC	GCTGGCGCTGGCGGC	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GCTGGCGCTGGCGGC	GCTGGCGCTGGCGGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PION	54103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76942815	76942815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81637024	81637024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86415919	86415919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97854151	97854151	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98609726	98609726	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	29	22	7	0	0
SRRT	51593	broad.mit.edu	37	7	100479332	100479332	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SERPINE1	5054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100778833	100778833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SPDYE6	729597	bcgsc.ca	37	7	101989090	101989090	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
DNAJB9	4189	broad.mit.edu	37	7	108212318	108212318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
LMOD2	442721	ucsc.edu;bcgsc.ca	37	7	123302045	123302045	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133932369	133932369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135323345	135323345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	18	12	6	0	0
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138417706	138417706	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139818942	139818942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142965205	142965205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	199	79	120	0	0
ZNF425	155054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148801944	148801944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SMARCD3	6604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150938652	150938652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	124	109	15	0	0
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154863297	154863297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155534695	155534695	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
SHH	6469	hgsc.bcm.edu	37	7	155596413	155596413	+	Silent	SNP	C	C	T	rs9333633	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	5	1	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742868	156742868	+	Missense_Mutation	SNP	C	C	A	rs199647631		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
UBE3C	9690	broad.mit.edu;bcgsc.ca	37	7	157000478	157000478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157013470	157013470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3047597	3047597	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CSMD1	64478	broad.mit.edu;bcgsc.ca	37	8	3432588	3432588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10466464	10466464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NUDT18	79873	bcgsc.ca	37	8	21965113	21965113	+	Missense_Mutation	SNP	T	T	C	rs3739435	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	5	5	0	0	0
SORBS3	10174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22421834	22421834	+	Silent	SNP	G	G	A	rs201952170		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LOXL2	4017	broad.mit.edu;bcgsc.ca	37	8	23174525	23174525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35579761	35579761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
UNC5D	137970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35588557	35588557	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41561586	41561586	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
OPRK1	4986	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54147371	54147371	+	Silent	SNP	C	C	T	rs200269505		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
OPRK1	4986	hgsc.bcm.edu	37	8	54163562	54163562	+	Silent	SNP	C	C	A	rs1051660	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
VCPIP1	80124	hgsc.bcm.edu	37	8	67579170	67579170	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ESRP1	54845	hgsc.bcm.edu;bcgsc.ca	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	106814998	106814998	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110587864	110587864	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	32	26	6	0	0
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	133823330	133823330	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ZFAT	57623	broad.mit.edu	37	8	135649757	135649757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	139278014	139278014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GPR20	2843	hgsc.bcm.edu	37	8	142367290	142367290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MROH6	642475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144653155	144653155	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998514	144998514	+	Silent	SNP	C	C	T	rs75586449	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	4	7	0	0
SPATC1	375686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145094825	145094825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu	37	8	145106724	145106724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145620718	145620718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	78	66	12	0	0
KIFC2	90990	hgsc.bcm.edu	37	8	145697835	145697835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	70	21	49	0	0
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145736909	145736909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	89	64	24	0	1
CBWD1	55871	ucsc.edu;bcgsc.ca	37	9	163985	163985	+	Silent	SNP	A	A	G	rs2482169		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	0	1	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	215057	215057	+	Missense_Mutation	SNP	T	T	C	rs481905	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	712006	712006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	738458	738458	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	2	1	0	0
VLDLR	7436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2643347	2643347	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832719	5832719	+	Missense_Mutation	SNP	G	G	C	rs13302671	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BNC2	54796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16419579	16419579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33572324	33572324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34306372	34306372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu	37	9	35715145	35715145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35853771	35853771	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	16	0	16	0	0
GRHPR	9380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37428531	37428531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	75	0	75	0	0
LOC642236	0	bcgsc.ca	37	9	68430383	68430383	+	RNA	SNP	C	C	A	rs192057542		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	4	0	0	0
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71861604	71861604	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TMEM2	23670	broad.mit.edu;bcgsc.ca	37	9	74305086	74305086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79933230	79933230	+	Missense_Mutation	SNP	C	C	T	rs144009026		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96021245	96021245	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	3	0	0	0
WNK2	65268	broad.mit.edu	37	9	96021293	96021293	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CCDC180	0	bcgsc.ca	37	9	100070351	100070351	+	Silent	SNP	G	G	A	rs12683119	byfrequency;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NCBP1	4686	hgsc.bcm.edu;bcgsc.ca	37	9	100409836	100409838	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
INVS	27130	broad.mit.edu	37	9	102888723	102888723	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EPB41L4B	54566	bcgsc.ca	37	9	111956668	111956668	+	Silent	SNP	G	G	A	rs41278379	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EPB41L4B	54566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112042162	112042162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	1	1	0	0
C9orf43	257169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116176059	116176059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RGS3	5998	hgsc.bcm.edu;broad.mit.edu	37	9	116269824	116269824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
DFNB31	25861	hgsc.bcm.edu	37	9	117166245	117166245	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TNC	3371	bcgsc.ca	37	9	117848659	117848659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125861009	125861009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	21	18	3	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135831	126135831	+	Silent	SNP	T	T	C	rs7848449	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM129B	64855	hgsc.bcm.edu	37	9	130269566	130269571	+	In_Frame_Del	DEL	CCGCCC	CCGCCC	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CCGCCC	CCGCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FAM129B	64855	bcgsc.ca	37	9	130289573	130289573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	7	7	0	0	0
DNM1	1759	bcgsc.ca	37	9	130984508	130984508	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	2	0	0	0
FIBCD1	84929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133799257	133799257	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs34222232	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SDCCAG3	10807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139299638	139299638	+	Missense_Mutation	SNP	G	G	A	rs200655256		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	25	0	25	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139400219	139400219	+	Missense_Mutation	SNP	G	G	A	rs61751542	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
LCN10	414332	broad.mit.edu	37	9	139634004	139634004	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RABL6	55684	hgsc.bcm.edu;broad.mit.edu	37	9	139734633	139734635	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MAMDC4	158056	hgsc.bcm.edu;bcgsc.ca	37	9	139748110	139748110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	0	3	0	0
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140373513	140373513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069468	141069468	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
tRNA-Phe	0	bcgsc.ca	37	MT	619	619	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1481	1352	128	0	1
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	1522202	1522202	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
DHRSX	207063	bcgsc.ca	37	X	2184933	2184933	+	Silent	SNP	G	G	A	rs200644172		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	34	20	14	0	0
ARSD	414	broad.mit.edu	37	X	2825437	2825437	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	1	1	0	0	0
TBL1X	6907	ucsc.edu;bcgsc.ca	37	X	9673126	9673126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	2	0	2	0	0
USP9X	8239	hgsc.bcm.edu;broad.mit.edu	37	X	40982957	40982957	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CCDC120	90060	hgsc.bcm.edu	37	X	48921959	48921959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CCDC120	90060	hgsc.bcm.edu	37	X	48925015	48925015	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	3	0	3	0	0
AKAP4	8852	bcgsc.ca	37	X	49955729	49955729	+	Silent	SNP	C	C	T	rs78668179	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	56591874	56591874	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
UQCRBP1	442454	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	56763768	56763768	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	741	740	1	0	0
STARD8	9754	broad.mit.edu	37	X	67941902	67941902	+	Missense_Mutation	SNP	C	C	T	rs61735034	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69902635	69902635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
SLC7A3	84889	broad.mit.edu;bcgsc.ca	37	X	70148709	70148709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BCYRN1	618	bcgsc.ca	37	X	70617393	70617393	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KIAA2022	340533	broad.mit.edu;bcgsc.ca	37	X	73960665	73960665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	73961524	73961524	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PRPS1	5631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106890920	106890920	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	30	14	16	0	0
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141204	114141204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
AGTR2	186	hgsc.bcm.edu;bcgsc.ca	37	X	115303928	115303928	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
NKAP	79576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119059239	119059239	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ATP1B4	23439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	119512613	119512613	+	Silent	SNP	C	C	T	rs148650396		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BCORL1	63035	hgsc.bcm.edu;bcgsc.ca	37	X	129149050	129149050	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135323411	135323411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MAGEA12	4111	broad.mit.edu;bcgsc.ca	37	X	151900357	151900357	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MAGEA12	4111	broad.mit.edu;bcgsc.ca	37	X	151900373	151900373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152807870	152807870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	11	7	4	0	0
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	153042767	153042767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	97	54	43	0	0
PDZD4	57595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153073942	153073942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	6	4	2	0	0
FLNA	2316	bcgsc.ca	37	X	153595114	153595114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	4	0	4	0	0
PRKAA2	5563	broad.mit.edu;bcgsc.ca	37	1	57173340	57173341	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
HIP1R	9026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123339931	123339932	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
EFS	10278	broad.mit.edu	37	14	23826637	23826638	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TMC5	79838	broad.mit.edu	37	16	19452014	19452015	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
KRTAP4-3	85290	broad.mit.edu	37	17	39324139	39324140	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FLT3LG	2323	hgsc.bcm.edu	37	19	49982165	49982166	+	Splice_Site	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CACNG6	59285	broad.mit.edu	37	19	54496174	54496175	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
FILIP1L	11259	hgsc.bcm.edu;bcgsc.ca	37	3	99567122	99567123	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
GCSAM	257144	broad.mit.edu;bcgsc.ca	37	3	111845872	111845873	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
AMTN	401138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71394929	71394930	+	Splice_Site	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
LARP7	51574	hgsc.bcm.edu	37	4	113578482	113578483	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
RAD50	10111	hgsc.bcm.edu	37	5	131931451	131931452	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	rs201732168		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
BOP1	23246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145512978	145512979	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
PRRC2B	84726	broad.mit.edu	37	9	134351684	134351685	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CAMSAP1	157922	hgsc.bcm.edu;broad.mit.edu	37	9	138719314	138719315	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	110496401	110496402	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
MECP2	4204	broad.mit.edu	37	X	153295915	153295916	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
CLTB	1212	hgsc.bcm.edu;mdanderson.org	37	5	175843341	175843342	+	Missense_Mutation	DNP	GA	GA	CG	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	0	0	0	0	0
