Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
DDX11L1	100287102	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	G	A	rs75175547		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu	37	1	6530886	6530886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8557547	8557547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	2	1	0	0
ANGPTL7	10218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11249964	11249964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KAZN	23254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15390118	15390118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MST1P2	11209	bcgsc.ca	37	1	16976187	16976187	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	4	3	0	0
IFI6	2537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27995817	27995817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	260	204	56	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NCDN	23154	broad.mit.edu;bcgsc.ca	37	1	36026523	36026523	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	12	0	0	0
FOXJ3	22887	broad.mit.edu;bcgsc.ca	37	1	42657323	42657323	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	5	0	0	0
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43055014	43055014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	6	1	0	0
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	44685801	44685801	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	80	76	4	0	0
MAST2	23139	broad.mit.edu	37	1	46493447	46493447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NSUN4	387338	bcgsc.ca	37	1	46810498	46810498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	6	0	0	0
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	50659584	50659584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZFYVE9	9372	bcgsc.ca	37	1	52704417	52704417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CYP2J2	1573	broad.mit.edu;bcgsc.ca	37	1	60377418	60377418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
LEPR	3953	hgsc.bcm.edu;broad.mit.edu	37	1	66098847	66098847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
IL23R	149233	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67724387	67724387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NEXN	91624	broad.mit.edu	37	1	78401561	78401561	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LPHN2	23266	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	82409449	82409449	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85592293	85592293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92187701	92187701	+	Missense_Mutation	SNP	C	C	A	rs140100898	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC44A3	126969	broad.mit.edu;bcgsc.ca	37	1	95310885	95310885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	1	3	0	0
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110561730	110561730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111862838	111862838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KCND3	3752	broad.mit.edu	37	1	112525124	112525126	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAGI3	260425	broad.mit.edu;ucsc.edu	37	1	114225611	114225611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	5	0	0	0
SPAG17	200162	broad.mit.edu;bcgsc.ca	37	1	118539252	118539252	+	Missense_Mutation	SNP	G	G	T	rs150351466	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TBX15	6913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	119427957	119427957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
MRPL9	65005	bcgsc.ca	37	1	151735532	151735532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	25	20	5	0	0
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151787731	151787731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	1	1	0	0
LCE6A	448835	broad.mit.edu	37	1	152816014	152816014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SPRR2A	6700	broad.mit.edu	37	1	153029123	153029123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	61	61	0	0	0
IL6R	3570	broad.mit.edu;bcgsc.ca	37	1	154427044	154427044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154841756	154841756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
YY1AP1	55249	broad.mit.edu;bcgsc.ca	37	1	155630075	155630075	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	32	27	5	0	0
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156841476	156841476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FCRL3	115352	broad.mit.edu;bcgsc.ca	37	1	157665960	157665960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LOC100505633	0	bcgsc.ca	37	1	159942893	159942893	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LY9	4063	bcgsc.ca	37	1	160784476	160784476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LOC440700	0	broad.mit.edu;bcgsc.ca	37	1	165677840	165677840	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
FMO1	2326	ucsc.edu	37	1	171227313	171227313	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
RGSL1	353299	broad.mit.edu	37	1	182443145	182443145	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HMCN1	83872	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186050464	186050464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TPR	7175	hgsc.bcm.edu;bcgsc.ca	37	1	186301382	186301382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	12	0	0	0
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	186909138	186909138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
CFHR4	10877	ucsc.edu;bcgsc.ca	37	1	196883674	196883674	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CACNA1S	779	broad.mit.edu;bcgsc.ca	37	1	201058470	201058470	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
IGFN1	91156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201193916	201193916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TMEM183A	92703	bcgsc.ca	37	1	202985162	202985162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	31	19	12	0	0
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204588338	204588338	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DSTYK	25778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205156626	205156626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ACBD3	64746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226347014	226347014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	6	3	0	0
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232144789	232144789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NTPCR	84284	ucsc.edu	37	1	233105834	233105834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	40	37	3	0	0
FH	2271	ucsc.edu	37	1	241667408	241667408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	116	95	21	0	0
EXO1	9156	broad.mit.edu	37	1	242042620	242042620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	2	2	0	0
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7214601	7214601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GATA3	2625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8115981	8115981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
DHTKD1	55526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	12148305	12148305	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21962834	21962834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
COMMD3-BMI1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	22618192	22618192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	5	7	0	0
GPR158	57512	ucsc.edu;bcgsc.ca	37	10	25839971	25839971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SVIL	6840	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	29818653	29818653	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GJD4	219770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	35897531	35897531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BMS1	9790	broad.mit.edu	37	10	43292520	43292520	+	Nonsense_Mutation	SNP	G	G	T	rs146520651	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	7	0	0	0
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50531426	50531426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AGAP7	653268	bcgsc.ca	37	10	51464918	51464918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	17	9	8	0	0
FLJ31813	0	bcgsc.ca	37	10	51786032	51786032	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DKK1	22943	broad.mit.edu	37	10	54076186	54076186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63845627	63845627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	1	2	0	0
CDH23	64072	broad.mit.edu	37	10	73437259	73437259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
SEC24C	9632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75528805	75528805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	22	17	5	0	0
KCNMA1	3778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	78761184	78761184	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CYP2C9	1559	bcgsc.ca	37	10	96748656	96748656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99126277	99126277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	60	56	4	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	0	9	0	0
AS3MT	57412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104638614	104638614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	20	15	5	0	0
CCDC172	374355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	118101581	118101581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TACC2	10579	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123846988	123846988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129903482	129903482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	2	4	0	0
MTG1	92170	hgsc.bcm.edu	37	10	135207754	135207754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	18	0	18	0	0
MUC5B	727897	bcgsc.ca	37	11	1262202	1262202	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4945010	4945010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OR51B2	79345	bcgsc.ca	37	11	5345495	5345495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OR51I2	390064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5475467	5475467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
UBQLN3	50613	broad.mit.edu;bcgsc.ca	37	11	5530029	5530029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PDE3B	5140	broad.mit.edu;bcgsc.ca	37	11	14865507	14865507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SPTY2D1	144108	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18636678	18636678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20907034	20907034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	24784833	24784833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30930510	30930510	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CCDC73	493860	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	32739646	32739646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36597790	36597790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DGKZ	8525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	46397072	46397072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	2	4	0	0
OR4X2	119764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48267186	48267186	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TRIM49B	283116	bcgsc.ca	37	11	49053853	49053853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TRIM49B	283116	bcgsc.ca	37	11	49055732	49055732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OR4A16	81327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55110948	55110948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OR5M10	390167	broad.mit.edu;bcgsc.ca	37	11	56344908	56344908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57087809	57087809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	17	9	8	0	0
OR5B12	390191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58206901	58206901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	54	0	54	0	0
RPLP0P2	113157	broad.mit.edu;bcgsc.ca	37	11	61404570	61404570	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	6	1	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64574692	64574692	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
PACS1	55690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66001334	66001334	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	4	4	0	0
CD248	57124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66083700	66083700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	9	0	0	0
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67167109	67167110	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FGF19	9965	hgsc.bcm.edu	37	11	69518485	69518485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NADSYN1	55191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71184625	71184625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RNF169	254225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74546991	74546991	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
MYO7A	4647	broad.mit.edu	37	11	76905570	76905570	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
USP35	57558	broad.mit.edu	37	11	77920580	77920580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	10	0	0	0
DLG2	1740	bcgsc.ca	37	11	83641481	83641481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
TRIM53AP	642569	bcgsc.ca	37	11	89730490	89730490	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108380726	108380726	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OR10G4	390264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123886949	123886949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BARX2	8538	broad.mit.edu;bcgsc.ca	37	11	129306690	129306690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ADAMTS8	11095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130275863	130275863	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SPATA19	219938	bcgsc.ca	37	11	133715405	133715405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
IQSEC3	440073	hgsc.bcm.edu	37	12	247900	247900	+	Silent	SNP	G	G	A	rs7313003		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CACNA2D4	93589	ucsc.edu;bcgsc.ca	37	12	1902879	1902879	+	Missense_Mutation	SNP	G	G	T	rs145150489	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ANO2	57101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	5685071	5685071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PIANP	196500	broad.mit.edu;ucsc.edu	37	12	6805620	6805620	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CD163	9332	broad.mit.edu;bcgsc.ca	37	12	7653770	7653770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
PHC1	1911	broad.mit.edu	37	12	9085175	9085175	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	6	0	0	0
GABARAPL1	23710	broad.mit.edu;bcgsc.ca	37	12	10365807	10365807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	121	68	53	0	0
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10777358	10777358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GPRC5D	55507	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13102863	13102863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HTR7P1	93164	bcgsc.ca	37	12	13154948	13154948	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	1	3	0	0
GRIN2B	2904	bcgsc.ca	37	12	13761624	13761624	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PLEKHA5	54477	bcgsc.ca	37	12	19475524	19475524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	17	17	0	0	0
ASUN	55726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27066421	27066421	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	50	46	4	0	0
KLHL42	57542	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	27933962	27933962	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	5	4	0	0
LRRK2	120892	broad.mit.edu	37	12	40689345	40689345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
KANSL2	54934	broad.mit.edu;ucsc.edu	37	12	49075169	49075169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RND1	27289	broad.mit.edu	37	12	49254807	49254807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ASIC1	41	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50471033	50471033	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FAM186A	121006	bcgsc.ca	37	12	50727696	50727696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRT74	121391	broad.mit.edu;bcgsc.ca	37	12	52967318	52967318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRT72	140807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52992834	52992834	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53189266	53189266	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HNRNPA1P10	664709	ucsc.edu;bcgsc.ca	37	12	54676577	54676577	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	1	5	0	0
GPR84	53831	ucsc.edu	37	12	54756471	54756471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LACRT	90070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55025610	55025610	+	Missense_Mutation	SNP	C	C	A	rs201410599	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56522216	56522216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	26	18	8	0	0
PAN2	9924	ucsc.edu;bcgsc.ca	37	12	56716450	56716450	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	8	4	0	0
MIP	4284	broad.mit.edu;bcgsc.ca	37	12	56845152	56845152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72017939	72017939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	2	4	0	0
GLIPR1L1	256710	broad.mit.edu	37	12	75737704	75737704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GLIPR1L2	144321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75804245	75804245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZDHHC17	23390	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	77209691	77209691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
SLC6A15	55117	broad.mit.edu;bcgsc.ca	37	12	85266932	85266932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DCN	1634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	91545457	91545457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	8	0	0	0
DCN	1634	broad.mit.edu	37	12	91546934	91546934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	8	0	0	0
PLEKHG7	440107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93149662	93149662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NR2C1	7181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	95434275	95434275	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	13	12	1	0	0
USP44	84101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	95911959	95911959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PGAM1P5	100132594	bcgsc.ca	37	12	96066722	96066722	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PRDM4	11108	broad.mit.edu;bcgsc.ca	37	12	108133237	108133237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	34	32	2	0	0
SART3	9733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108931880	108931880	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	18	8	10	0	0
ACACB	32	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109660636	109660636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	11	6	5	0	0
TRPV4	59341	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110230204	110230204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
HVCN1	84329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111098996	111098996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
MAP1LC3B2	643246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117013934	117013934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	248	247	1	0	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120567240	120567240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	68	54	14	0	0
SIRT4	23409	broad.mit.edu	37	12	120750304	120750304	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	14	14	0	0	0
MLXIP	22877	bcgsc.ca	37	12	122623075	122623075	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	15	14	1	0	0
SBNO1	55206	broad.mit.edu	37	12	123782680	123782680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	29	29	0	0	0
DNAH10	196385	broad.mit.edu;ucsc.edu	37	12	124256213	124256213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124317840	124317840	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124399087	124399087	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DHX37	57647	broad.mit.edu;bcgsc.ca	37	12	125448959	125448959	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129028583	129028583	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TMEM132D	121256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	129559056	129559056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
EP400NL	347918	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132599038	132599038	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PARP4	143	hgsc.bcm.edu;broad.mit.edu	37	13	25016806	25016806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	15	15	0	0	0
ATP8A2	51761	broad.mit.edu	37	13	26411330	26411330	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
B3GALTL	145173	bcgsc.ca	37	13	31843387	31843387	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
PDS5B	23047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33316808	33316808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	2	1	0	0
MIR548F5	100302239	bcgsc.ca	37	13	36125180	36125180	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MIR548F5	100302239	bcgsc.ca	37	13	36229712	36229712	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MIR548F5	100302239	bcgsc.ca	37	13	36241463	36241463	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ENOX1	55068	ucsc.edu	37	13	43986176	43986176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TPT1-AS1	100190939	bcgsc.ca	37	13	45964930	45964930	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	19	12	7	0	0
UTP14C	9724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52604696	52604696	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	3	1	0	0
THSD1	55901	bcgsc.ca	37	13	52951587	52951587	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
PCDH9	5101	ucsc.edu;bcgsc.ca	37	13	67800034	67800034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GPR183	1880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99947317	99947317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	5	0	0	0
MIR548AN	100616144	bcgsc.ca	37	13	100048978	100048978	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103399003	103399003	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113909353	113909353	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	14	13	1	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	7	0	0	0
OR4K15	81127	broad.mit.edu	37	14	20443680	20443680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23521682	23521682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	0	3	0	0
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23791464	23791464	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	135	91	44	0	0
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24731331	24731331	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KHNYN	23351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24901482	24901482	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	15	15	0	0	0
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	33291762	33291762	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36191028	36191028	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	0	4	0	0
SOS2	6655	bcgsc.ca	37	14	50616832	50616832	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	12	0	0	0
NID2	22795	broad.mit.edu	37	14	52508850	52508850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
ERO1L	30001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53110333	53110333	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	77	66	11	0	0
FERMT2	10979	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53386013	53386013	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PELI2	57161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	56755230	56755230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TMEM260	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57103241	57103241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	10	0	0	0
RTN1	6252	ucsc.edu;bcgsc.ca	37	14	60212795	60212795	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64580141	64580141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ADAM21	8747	broad.mit.edu	37	14	70924812	70924812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RBM25	58517	broad.mit.edu	37	14	73572607	73572608	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DLST	1743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75359678	75359678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101011394	101011394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HSP90AA1	3320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102551693	102551693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	194	137	57	0	0
SIVA1	10572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105222044	105222044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	185	127	58	0	0
BRF1	2972	broad.mit.edu;ucsc.edu	37	14	105688210	105688210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	17	14	3	0	0
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28441707	28441707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TJP1	7082	broad.mit.edu;ucsc.edu	37	15	30018654	30018654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
FAN1	22909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31217483	31217483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	2	2	0	0
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31342674	31342674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
EMC4	51234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	34517318	34517318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	129	113	16	0	0
FAM98B	283742	broad.mit.edu;bcgsc.ca	37	15	38762452	38762452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	11	10	1	0	0
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38808534	38808534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CHP1	11261	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41523643	41523643	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41861213	41861213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54825158	54825158	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CGNL1	84952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	57731629	57731629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
VPS13C	54832	bcgsc.ca	37	15	62209759	62209759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	2	1	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63017258	63017258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CLPX	10845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65443246	65443246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SNAPC5	10302	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66787699	66787699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	20	17	3	0	0
CD276	80381	broad.mit.edu	37	15	73994904	73994904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	112	107	5	0	0
CSK	1445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75091628	75091628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	31	27	4	0	0
SNUPN	10073	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75890858	75890858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	43	33	10	0	0
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	78732221	78732221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MESDC1	59274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81295513	81295513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	28	15	13	0	0
AGBL1	123624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86806035	86806035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KIF7	374654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90190829	90190829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HAGHL	84264	hgsc.bcm.edu	37	16	778414	778414	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1537885	1537885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CREBBP	1387	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3843582	3843582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	2	1	0	0
RSL1D1	26156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11940360	11940360	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PDXDC1	23042	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15102644	15102644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ABCC6P1	653190	broad.mit.edu;ucsc.edu	37	16	18586363	18586363	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20787314	20787314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	125	121	4	0	0
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23491135	23491135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	60	43	17	0	0
IL21R	50615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27454345	27454345	+	Missense_Mutation	SNP	C	C	A	rs146177564	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
KCTD13	253980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29918291	29918291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	51	45	6	0	0
GDPD3	79153	broad.mit.edu	37	16	30123477	30123477	+	Silent	SNP	C	C	A	rs150465018	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
CORO1A	11151	broad.mit.edu	37	16	30198031	30198031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF768	79724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30535865	30535865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	139	90	49	0	0
BCKDK	10295	broad.mit.edu;bcgsc.ca	37	16	31121421	31121421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	137	134	3	0	0
ITGAM	3684	ucsc.edu;bcgsc.ca	37	16	31336693	31336693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	1	2	0	0
ZNF267	10308	hgsc.bcm.edu	37	16	31927495	31927495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	11	11	0	0	0
SLC6A10P	386757	bcgsc.ca	37	16	32890847	32890847	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RNU6-76	100873777	bcgsc.ca	37	16	33544247	33544247	+	RNA	SNP	C	C	T	rs28502114	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CES1P2	0	bcgsc.ca	37	16	55776508	55776508	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	2	3	0	0
CCDC135	84229	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57732903	57732903	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57935280	57935280	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LRRC29	26231	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67241849	67241849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
KCTD19	146212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67333415	67333415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
VAC14	55697	bcgsc.ca	37	16	70726795	70726795	+	Silent	SNP	C	C	A	rs2278983	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	76	76	0	0	0
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	71209570	71209570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
RFWD3	55159	bcgsc.ca	37	16	74670456	74670456	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	7	1	0	0
PKD1L2	114780	bcgsc.ca	37	16	81249935	81249935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FOXC2	2303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	86601196	86601196	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TP53	7157	hgsc.bcm.edu	37	17	7579521	7579521	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	10	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7579722	7579722	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	0	4	0	0
LOC284023	0	broad.mit.edu	37	17	7819093	7819093	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ARHGAP44	9912	hgsc.bcm.edu;broad.mit.edu	37	17	12853032	12853032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LOC339240	0	broad.mit.edu	37	17	18328133	18328133	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAP2K3	5606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	21215491	21215491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	50	48	2	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
BLMH	642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28601155	28601155	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	9	0	0	0
RAB11FIP4	84440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29848225	29848225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
RAB11FIP4	84440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29848320	29848320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
SLFN14	342618	broad.mit.edu;bcgsc.ca	37	17	33880003	33880003	+	Silent	SNP	C	C	G	rs28498569	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GAS2L2	246176	broad.mit.edu;ucsc.edu	37	17	34072812	34072812	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35468526	35468526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	15	15	0	0	0
LRRC37A11P	342666	bcgsc.ca	37	17	37201531	37201531	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRT39	390792	bcgsc.ca	37	17	39116728	39116728	+	Missense_Mutation	SNP	G	G	A	rs17843021	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39140279	39140279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRTAP1-3	81850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39190809	39190809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRTAP4-3	85290	bcgsc.ca	37	17	39324355	39324355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRT33B	3884	broad.mit.edu	37	17	39520197	39520197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RND2	8153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41180515	41180515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	5	0	0	0
FMNL1	752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43322367	43322367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	1	1	0	0
MAP3K14-AS1	100133991	bcgsc.ca	37	17	43342325	43342325	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NPEPPS	9520	broad.mit.edu;bcgsc.ca	37	17	45668234	45668234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	45	39	6	0	0
SNF8	11267	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47007866	47007866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	42	38	4	0	0
BZRAP1-AS1	100506779	bcgsc.ca	37	17	56404161	56404161	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PRKAR1A	5573	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66526420	66526420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAP2K6	5608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67515498	67515498	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KCNJ2	3759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	68171641	68171641	+	Missense_Mutation	SNP	G	G	T	rs199473380		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SSTR2	6752	ucsc.edu;bcgsc.ca	37	17	71166384	71166384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MRPS7	51081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73258729	73258729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	43	24	19	0	0
MRPL38	64978	broad.mit.edu;bcgsc.ca	37	17	73898152	73898152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	45	42	3	0	0
AFMID	125061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76202078	76202078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	14	12	2	0	0
LOC100653515	0	broad.mit.edu	37	17	76886822	76886822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TBC1D16	125058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77984098	77984098	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
FSCN2	25794	hgsc.bcm.edu	37	17	79504073	79504073	+	Silent	SNP	C	C	T	rs143561119	by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	rs7506026		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TWSG1	57045	broad.mit.edu	37	18	9399488	9399488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	5	0	0	0
ANKRD30B	374860	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14748544	14748544	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ROCK1	6093	broad.mit.edu	37	18	18586509	18586509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	3	3	0	0
DSC3	1825	broad.mit.edu	37	18	28610987	28610987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	34320707	34320707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	27	24	3	0	0
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43221304	43221304	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SKA1	220134	ucsc.edu	37	18	47908517	47908517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
ALPK2	115701	broad.mit.edu	37	18	56171296	56171296	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60036497	60036497	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CCDC102B	79839	broad.mit.edu	37	18	66505987	66505987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NFATC1	4772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77246918	77246918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1047284	1047284	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912817	1912817	+	Silent	SNP	C	C	T	rs35870594	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	1	1	0	0
LMNB2	84823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2434856	2434856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	10	2	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3644184	3644184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	13	12	1	0	0
TICAM1	148022	bcgsc.ca	37	19	4817397	4817397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7516148	7516148	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
STXBP2	6813	broad.mit.edu;bcgsc.ca	37	19	7708095	7708095	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	44	36	8	0	0
LRRC8E	80131	broad.mit.edu	37	19	7964190	7964190	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	2	3	0	0
CDC37	11140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10503780	10503780	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	375	297	78	0	0
PDE4A	5141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10574513	10574513	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	17	15	2	0	0
CNN1	1264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11657510	11657510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	10	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	rs16022	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PALM3	342979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14169968	14169968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF333	84449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14815966	14815966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	1	1	0	0
AKAP8	10270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15482785	15482785	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	13	12	1	0	0
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15507978	15507978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	203	174	29	0	0
CYP4F12	66002	broad.mit.edu;ucsc.edu	37	19	15789193	15789193	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CYP4F2	8529	ucsc.edu;bcgsc.ca	37	19	16000335	16000335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17394631	17394631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC27A1	376497	ucsc.edu;bcgsc.ca	37	19	17599870	17599870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	2	5	0	0
FAM129C	199786	broad.mit.edu	37	19	17648324	17648324	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAST3	23031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18241370	18241370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu	37	19	22363229	22363229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	24309378	24309378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	7	1	0	0
LRP3	4037	hgsc.bcm.edu;broad.mit.edu	37	19	33696766	33696766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	27	19	8	0	0
FFAR3	2865	broad.mit.edu;mdanderson.org	37	19	35850698	35850698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36831144	36831144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38378662	38378662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu	37	19	38573333	38573333	+	Silent	SNP	C	C	T	rs61729132	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
CATSPERG	57828	bcgsc.ca;mdanderson.org	37	19	38858328	38858328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RAB4B-EGLN2	100529264	ucsc.edu;bcgsc.ca	37	19	41313793	41313793	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	186	181	5	0	0
CYP2B6	1555	broad.mit.edu;ucsc.edu	37	19	41518259	41518259	+	Missense_Mutation	SNP	C	C	A	rs138030127	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ARHGEF1	9138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42410903	42410903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	37	30	7	0	0
CKM	1158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45822926	45822926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
RASIP1	54922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49227597	49227597	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC6A16	28968	broad.mit.edu;bcgsc.ca	37	19	49793931	49793931	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SCAF1	58506	broad.mit.edu;bcgsc.ca	37	19	50157655	50157655	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	110	104	5	1	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
VSIG10L	147645	broad.mit.edu	37	19	51844464	51844464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NKG7	4818	hgsc.bcm.edu;broad.mit.edu	37	19	51875493	51875493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ZNF880	400713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52888417	52888417	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	23	21	2	0	0
ZNF525	170958	bcgsc.ca	37	19	53886527	53886527	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	2	1	0	0
CNOT3	4849	ucsc.edu;bcgsc.ca	37	19	54656063	54656063	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	1	2	0	0
RPS9	6203	broad.mit.edu	37	19	54705408	54705408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1906	1903	0	1	2
LILRA3	11026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803031	54803031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
SYT5	6861	hgsc.bcm.edu	37	19	55684927	55684927	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SSC5D	284297	broad.mit.edu;bcgsc.ca	37	19	56024505	56024505	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NLRP13	126204	broad.mit.edu	37	19	56410249	56410249	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF667	63934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952598	56952598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	13	7	6	0	0
ZNF835	90485	hgsc.bcm.edu	37	19	57175988	57175988	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58004403	58004403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	6	2	0	0
ZNF814	730051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58384936	58384936	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	2	3	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
C19orf18	147685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58485719	58485719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RPS5	6193	broad.mit.edu;bcgsc.ca	37	19	58905869	58905869	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
ZNF584	201514	bcgsc.ca	37	19	58929136	58929136	+	Missense_Mutation	SNP	G	G	T	rs3764534	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	44	39	5	0	0
C2orf50	130813	bcgsc.ca	37	2	11284210	11284210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AGBL5	60509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27290394	27290394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	2	3	0	0
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu	37	2	36583544	36583544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
HEATR5B	54497	broad.mit.edu	37	2	37215999	37215999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40657111	40657111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ASPRV1	151516	ucsc.edu;bcgsc.ca	37	2	70188113	70188113	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
ANKRD53	79998	hgsc.bcm.edu	37	2	71206267	71206267	+	Missense_Mutation	SNP	G	G	A	rs57527165	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LOC442028	0	ucsc.edu	37	2	95539093	95539093	+	RNA	SNP	C	C	A	rs112056322		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96948949	96948949	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102964457	102964457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MRPS9	64965	broad.mit.edu	37	2	105654631	105654631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	6	3	0	0
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105886085	105886085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	2	5	0	0
SLC5A7	60482	ucsc.edu;bcgsc.ca	37	2	108609540	108609540	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GCC2	9648	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109087646	109087646	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MERTK	10461	ucsc.edu;bcgsc.ca	37	2	112740485	112740485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	17	4	13	0	0
WDR33	55339	broad.mit.edu	37	2	128477187	128477187	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	5	1	0	0
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128631584	128631584	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	2	2	0	0
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130898834	130898834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	99	99	0	0	0
RNU6-81	100873780	bcgsc.ca	37	2	132219550	132219550	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
NEB	4703	bcgsc.ca	37	2	152515607	152515607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SCN2A	6326	broad.mit.edu;bcgsc.ca	37	2	166166936	166166936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	167129186	167129186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DHRS9	10170	bcgsc.ca	37	2	169939886	169939886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DCAF17	80067	ucsc.edu;bcgsc.ca	37	2	172330394	172330394	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	173338941	173338941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
WIPF1	7456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	175427307	175427307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179477034	179477034	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179482553	179482553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ITGA4	3676	broad.mit.edu;bcgsc.ca	37	2	182360586	182360586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ITGA4	3676	broad.mit.edu;bcgsc.ca	37	2	182399023	182399023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ZNF804A	91752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	185803043	185803043	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CALCRL	10203	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	188250272	188250272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
COL5A2	1290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189917495	189917495	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
CCDC150	284992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197541324	197541324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SGOL2	151246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201397779	201397779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CFLAR	8837	ucsc.edu;bcgsc.ca	37	2	201994606	201994606	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	4	2	0	0
INO80D	54891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	206869265	206869265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174885	207174885	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KLF7	8609	bcgsc.ca	37	2	207988945	207988945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	1	1	0	0
CXCR2P1	3580	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218924436	218924436	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TTLL4	9654	broad.mit.edu	37	2	219602615	219602615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223773830	223773830	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	13	13	0	0	0
DAW1	164781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228770995	228770995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SP140	11262	ucsc.edu;bcgsc.ca	37	2	231155258	231155258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
EIF4E2	9470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233431658	233431658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	51	22	29	0	0
DGKD	8527	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234344974	234344974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
UGT1A3	54659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234638397	234638397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MSL3P1	151507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234775230	234775230	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	15	12	3	0	0
COL6A3	1293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238275811	238275811	+	Silent	SNP	G	G	A	rs140516220		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
UBOX5	22888	broad.mit.edu;bcgsc.ca	37	20	3090889	3090889	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	21	14	7	0	0
ADAM33	80332	broad.mit.edu;bcgsc.ca	37	20	3654768	3654768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SNAP25-AS1	100131208	bcgsc.ca	37	20	10025200	10025200	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
SEC23B	10483	ucsc.edu;bcgsc.ca	37	20	18491542	18491542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	15	11	3	1	0
CST9	128822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23584241	23584241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29625842	29625842	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29626000	29626000	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628209	29628209	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NECAB3	63941	broad.mit.edu	37	20	32248098	32248098	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	38	28	10	0	0
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33328359	33328359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	22	10	12	0	0
DHX35	60625	mdanderson.org	37	20	37630412	37630412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	5	1	0	0
PLCG1	5335	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39794149	39794149	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	1	7	0	0
SDC4	6385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43956014	43956014	+	Missense_Mutation	SNP	A	A	G	rs149518436		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	71	26	45	0	0
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	54961553	54961553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	2	6	0	0
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62616311	62616311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	25	17	8	0	0
NPBWR2	2832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62737957	62737957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SAMSN1	64092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15893519	15893519	+	Missense_Mutation	SNP	G	G	T	rs192978628	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAP3K7CL	56911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	30464777	30464777	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
SCAF4	57466	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	33043911	33043911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	35	12	23	0	0
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34011381	34011381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
TRPM2	7226	broad.mit.edu;bcgsc.ca	37	21	45838383	45838383	+	Nonsense_Mutation	SNP	C	C	T	rs143493112	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
KRTAP10-3	386682	bcgsc.ca	37	21	45978319	45978319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
POTEH	23784	broad.mit.edu	37	22	16266963	16266963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CLDN5	7122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19511638	19511638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
DGCR8	54487	broad.mit.edu;bcgsc.ca	37	22	20080378	20080378	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	13	12	1	0	0
SERPIND1	3053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140341	21140341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
THAP7-AS1	439931	broad.mit.edu;bcgsc.ca	37	22	21363364	21363364	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
IGLL1	3543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	23915564	23915564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	12	0	0	0
MMP11	4320	broad.mit.edu;bcgsc.ca	37	22	24121481	24121481	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
UPB1	51733	hgsc.bcm.edu;broad.mit.edu	37	22	24911294	24911294	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423258	26423258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DEPDC5	9681	ucsc.edu;bcgsc.ca	37	22	32266663	32266663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TEX33	339669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37397950	37397950	+	Silent	SNP	G	G	T	rs200772582	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TAB1	10454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39811035	39811035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	6	0	0	0
TNRC6B	23112	ucsc.edu;bcgsc.ca	37	22	40657846	40657846	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TNRC6B	23112	bcgsc.ca;mdanderson.org	37	22	40666127	40666127	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MOV10L1	54456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50552817	50552817	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
IRAK2	3656	hgsc.bcm.edu;bcgsc.ca	37	3	10255048	10255048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
GADL1	339896	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30875737	30875737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TTC21A	199223	bcgsc.ca	37	3	39156157	39156157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
LARS2	23395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45589017	45589017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	15	12	3	0	0
SETD2	29072	broad.mit.edu;bcgsc.ca	37	3	47161746	47161746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	3	2	0	0
KIF9-AS1	285352	bcgsc.ca	37	3	47284747	47284747	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47454406	47454406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
COL7A1	1294	broad.mit.edu;bcgsc.ca	37	3	48632594	48632594	+	Translation_Start_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49147976	49147976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	27	24	3	0	0
MST1	4485	bcgsc.ca	37	3	49722288	49722288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	23	23	0	0	0
SLC38A3	10991	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50256024	50256024	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PBRM1	55193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52643651	52643651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
ITIH3	3699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52841088	52841088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	2	1	0	0
FAM208A	23272	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56702515	56702515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57616535	57616535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FLNB	2317	broad.mit.edu	37	3	58145372	58145372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	100	78	22	0	0
EPHA6	285220	ucsc.edu;bcgsc.ca	37	3	96706665	96706665	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
EPHA6	285220	broad.mit.edu;bcgsc.ca	37	3	97194260	97194260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ATG3	64422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112257000	112257000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LRRC58	116064	hgsc.bcm.edu	37	3	120068022	120068022	+	Silent	SNP	C	C	G	rs6770482		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
POLQ	10721	ucsc.edu;bcgsc.ca	37	3	121178920	121178920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
CASR	846	broad.mit.edu	37	3	121976121	121976121	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
BFSP2	8419	broad.mit.edu	37	3	133169164	133169164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PIK3CB	5291	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138478043	138478043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NMNAT3	349565	ucsc.edu;bcgsc.ca	37	3	139292460	139292460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	0	7	0	0
PAQR9	344838	ucsc.edu;bcgsc.ca	37	3	142681441	142681441	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZIC1	7545	hgsc.bcm.edu	37	3	147127937	147127937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	148575243	148575243	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
TSC22D2	9819	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150128968	150128968	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	1	7	0	0
PTX3	5806	broad.mit.edu;ucsc.edu	37	3	157160724	157160724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
IQCJ-SCHIP1	100505385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	159605617	159605617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
KPNA4	3840	broad.mit.edu	37	3	160243877	160243877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	8	1	0	0
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160804280	160804280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZBBX	79740	ucsc.edu;bcgsc.ca	37	3	167033573	167033573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LRRC34	151827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169514567	169514567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198352	170198352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TNIK	23043	broad.mit.edu	37	3	170928941	170928941	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
ECT2	1894	broad.mit.edu	37	3	172520657	172520657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NAALADL2	254827	bcgsc.ca	37	3	175189492	175189492	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
USP13	8975	ucsc.edu	37	3	179483602	179483602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	5	2	0	0
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	180324359	180324359	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184910464	184910464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
CEP19	84984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196434499	196434499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	3	2	0	0
GAK	2580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	882712	882712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	30	23	7	0	0
TMEM175	84286	broad.mit.edu;ucsc.edu	37	4	947039	947039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	98	92	6	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	55	18	37	0	0
TACC3	10460	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1742615	1742615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	90	82	8	0	0
FAM86EP	348926	bcgsc.ca	37	4	3950045	3950045	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HTRA3	94031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8293280	8293280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DEFB131	644414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	9452101	9452101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FAM184B	27146	broad.mit.edu	37	4	17706724	17706724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZCCHC4	29063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25351214	25351214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	37903767	37903767	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
WDR19	57728	bcgsc.ca	37	4	39188188	39188188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	0	4	0	0
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	47746504	47746504	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SCFD2	152579	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	54011642	54011642	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	23	21	2	0	0
SRP72	6731	ucsc.edu;bcgsc.ca	37	4	57352563	57352563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	72363343	72363343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	73941997	73941997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ANKRD17	26057	broad.mit.edu	37	4	74005860	74005860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
CXCL1	2919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74735403	74735403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PARM1	25849	broad.mit.edu;bcgsc.ca	37	4	75938041	75938041	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
CDKL2	8999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76522169	76522169	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
COQ2	27235	broad.mit.edu	37	4	84205941	84205941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DAPP1	27071	bcgsc.ca	37	4	100738081	100738081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104082566	104082566	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
ARHGEF38	54848	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	106534599	106534599	+	Nonsense_Mutation	SNP	C	C	A	rs61751053	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CYP2U1	113612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	108866353	108866353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
HADH	3033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	108944697	108944697	+	Missense_Mutation	SNP	G	G	T	rs144699575	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	86	74	12	0	0
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	111441505	111441505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
ANK2	287	broad.mit.edu;bcgsc.ca	37	4	114257869	114257869	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120182880	120182880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ANXA5	308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122607510	122607510	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	716	629	87	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126329878	126329878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126329907	126329907	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FAT4	79633	broad.mit.edu;bcgsc.ca	37	4	126336106	126336106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FAT4	79633	broad.mit.edu;bcgsc.ca	37	4	126373173	126373173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
GYPE	2996	ucsc.edu;bcgsc.ca	37	4	144797985	144797985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HHIP	64399	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	145628246	145628246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147830262	147830262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TENM3	55714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	183696223	183696223	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PDLIM3	27295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186427748	186427748	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	7	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187534440	187534440	+	Missense_Mutation	SNP	G	G	T	rs200812915	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	5	5	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187629193	187629193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	480044	480044	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	25	20	5	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10258587	10258587	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	160	125	35	0	0
CDH18	1016	ucsc.edu;bcgsc.ca	37	5	19721543	19721543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
PDZD2	23037	ucsc.edu;bcgsc.ca	37	5	32088697	32088697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38966809	38966809	+	Silent	SNP	C	C	A	rs149142099	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
SKIV2L2	23517	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54619984	54619984	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	6	2	0	0
KIF2A	3796	bcgsc.ca	37	5	61673487	61673487	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LOC647859	0	bcgsc.ca	37	5	70370106	70370106	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ARHGEF28	64283	ucsc.edu	37	5	73142221	73142221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CRHBP	1393	ucsc.edu;bcgsc.ca	37	5	76264679	76264679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89923239	89923239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90106472	90106472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SPATA9	83890	ucsc.edu;bcgsc.ca	37	5	95018528	95018528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SEMA6A	57556	broad.mit.edu;bcgsc.ca	37	5	115837909	115837909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132087879	132087879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SEPT8	23176	hgsc.bcm.edu;bcgsc.ca	37	5	132097158	132097158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132272803	132272803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138728147	138728147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140207893	140207893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
PCDHB13	56123	ucsc.edu	37	5	140594815	140594815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	4	4	0	0
PCDHGA7	56108	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140763290	140763290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142264925	142264925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ITK	3702	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156671402	156671402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CYFIP2	26999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156753261	156753261	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
IL12B	3593	bcgsc.ca	37	5	158750252	158750252	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170668124	170668124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	6	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
COL23A1	91522	broad.mit.edu;ucsc.edu	37	5	177690260	177690260	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BTNL3	10917	broad.mit.edu	37	5	180432368	180432368	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BTNL9	153579	broad.mit.edu;bcgsc.ca	37	5	180477228	180477228	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
OR2V2	285659	broad.mit.edu;bcgsc.ca	37	5	180582781	180582781	+	Missense_Mutation	SNP	C	C	T	rs200222451		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NQO2	4835	broad.mit.edu	37	6	3012810	3012810	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	163	162	1	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12121200	12121200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12163624	12163624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	7	3	0	0
NRSN1	140767	ucsc.edu	37	6	24145937	24145937	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OR2W1	26692	broad.mit.edu	37	6	29012545	29012545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OR2H1	26716	ucsc.edu;bcgsc.ca	37	6	29429993	29429993	+	Missense_Mutation	SNP	G	G	T	rs139057187	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GABBR1	2550	broad.mit.edu;bcgsc.ca	37	6	29591685	29591685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	rs11753382		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	6	0	0	0
ABCF1	23	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30552279	30552279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	36	36	0	0	0
EHMT2	10919	broad.mit.edu;ucsc.edu	37	6	31856281	31856281	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CFB	629	broad.mit.edu	37	6	31917321	31917321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PSMB9	5698	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32825820	32825820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	47	36	11	0	0
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33630346	33630346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
BTBD9	114781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38561778	38561778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38800136	38800136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KCNK17	89822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39271826	39271826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PRPH2	5961	broad.mit.edu;ucsc.edu	37	6	42689604	42689604	+	Missense_Mutation	SNP	C	C	A	rs61755787	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CNPY3	10695	broad.mit.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42957364	42957364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	8	2	0	0
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607338	46607338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
OPN5	221391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47754293	47754293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GLYATL3	389396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	49485158	49485158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51612798	51612798	+	Missense_Mutation	SNP	C	C	A	rs141507554		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ELOVL5	60481	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53139932	53139932	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	92	82	10	0	0
TINAG	27283	bcgsc.ca;mdanderson.org	37	6	54172881	54172881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FAM83B	222584	broad.mit.edu;bcgsc.ca	37	6	54805222	54805222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56033011	56033011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RNU6-71	100873774	bcgsc.ca	37	6	56354218	56354218	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RNU6-71	100873774	broad.mit.edu;bcgsc.ca	37	6	56569107	56569107	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	63991038	63991038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65301109	65301109	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
COL19A1	1310	bcgsc.ca	37	6	70916977	70916977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MB21D1	115004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74161347	74161347	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PRSS35	167681	broad.mit.edu	37	6	84234143	84234143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84292059	84292059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
NT5E	4907	ucsc.edu;bcgsc.ca	37	6	86181104	86181104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	2	1	0	0
NT5E	4907	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	86195053	86195053	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	1	1	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
USP45	85015	bcgsc.ca	37	6	99956553	99956553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
SIM1	6492	hgsc.bcm.edu;bcgsc.ca	37	6	100898139	100898139	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102503296	102503296	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AIM1	202	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106975232	106975232	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AKD1	221264	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	109850273	109850273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FIG4	9896	broad.mit.edu	37	6	110112598	110112598	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	7	0	0	0
GOPC	57120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117923266	117923266	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	119285913	119285913	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
GJA1	2697	ucsc.edu	37	6	121768481	121768481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	55	51	4	0	0
NCOA7	135112	broad.mit.edu	37	6	126210486	126210486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131927695	131927695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	1	4	0	0
TAAR5	9038	bcgsc.ca	37	6	132910431	132910431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MYB	4602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	135513461	135513461	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MYB	4602	bcgsc.ca	37	6	135517036	135517036	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HECA	51696	broad.mit.edu	37	6	139487898	139487898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HIVEP2	3097	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	143094923	143094923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GRM1	2911	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	146708064	146708064	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146708146	146708146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151055067	151055067	+	Missense_Mutation	SNP	G	G	A	rs199980034		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151647016	151647016	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152551838	152551838	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155566830	155566830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	5	3	0	0
SLC22A2	6582	hgsc.bcm.edu	37	6	160663410	160663410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC22A2	6582	bcgsc.ca	37	6	160663410	160663422	+	Frame_Shift_Del	DEL	ATAATAATTTTTA	ATAATAATTTTTA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	ATAATAATTTTTA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC22A2	6582	hgsc.bcm.edu	37	6	160663414	160663438	+	In_Frame_Del	DEL	TAATTTTTAGCCATTGTAGATCTAA	TAATTTTTAGCCATTGTAGATCTAA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TAATTTTTAGCCATTGTAGATCTAA	TAATTTTTAGCCATTGTAGATCTAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC22A2	6582	bcgsc.ca	37	6	160663424	160663435	+	Frame_Shift_Del	DEL	CCATTGTAGATC	CCATTGTAGATC	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	CCATTGTAGATC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
C6orf123	26238	broad.mit.edu;bcgsc.ca	37	6	168188273	168188273	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MLLT4-AS1	653483	broad.mit.edu;bcgsc.ca	37	6	168226966	168226966	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2752257	2752257	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
AP5Z1	9907	broad.mit.edu	37	7	4828476	4828476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
C1GALT1	56913	broad.mit.edu;bcgsc.ca	37	7	7283285	7283285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	46	25	21	0	0
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20180669	20180669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NUPL2	11097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23240027	23240027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	32	29	3	0	0
KIAA0087	9808	bcgsc.ca	37	7	26577985	26577985	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
WIPF3	644150	broad.mit.edu	37	7	29923681	29923681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33423320	33423320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	8	1	0	0
EGFR-AS1	100507500	ucsc.edu;bcgsc.ca	37	7	55248936	55248936	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SEPT14	346288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	55910667	55910667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF680	340252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63982292	63982292	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	21	11	10	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	70255405	70255405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RHBDD2	57414	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	75508485	75508485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	211	149	62	0	0
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77764344	77764344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	77814971	77814971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86394717	86394717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ABCB4	5244	broad.mit.edu;bcgsc.ca	37	7	87069022	87069022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	90003657	90003657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	91792948	91792948	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LRRD1	401387	ucsc.edu	37	7	91793876	91793876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRIT1	889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91864777	91864777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	6	2	0	0
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99023158	99023158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	4	1	0	0
PVRIG	79037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99817600	99817600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	2	1	0	0
MUC17	140453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100674469	100674469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MUC17	140453	ucsc.edu;bcgsc.ca	37	7	100681947	100681947	+	Missense_Mutation	SNP	A	A	T	rs139220229	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103180836	103180836	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103243894	103243894	+	Missense_Mutation	SNP	C	C	G	rs114389730	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF277	11179	ucsc.edu	37	7	111927088	111927088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	6	0	0	0
IFRD1	3475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	112090794	112090794	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	13	8	5	0	0
TFEC	22797	ucsc.edu;bcgsc.ca	37	7	115580883	115580883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
IQUB	154865	bcgsc.ca	37	7	123109376	123109376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
POT1	25913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124491967	124491967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	4	1	0	0
GRM8	2918	broad.mit.edu;ucsc.edu	37	7	126410002	126410002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127631020	127631020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	94	64	30	0	0
PLXNA4	91584	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	131872275	131872275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139727101	139727101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	17	10	7	0	0
TAS2R4	50832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141478815	141478815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
EPHA1	2041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143098540	143098540	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ZNF212	7988	hgsc.bcm.edu	37	7	148936892	148936892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	7	149499235	149499235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SSPO	23145	broad.mit.edu;bcgsc.ca	37	7	149503951	149503951	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151879463	151879463	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	1	1	0	0
EFHA2	286097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	16944544	16944544	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BMP1	649	broad.mit.edu;bcgsc.ca	37	8	22064484	22064484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23294562	23294562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	6	4	0	0
NEFM	4741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	24774959	24774959	+	Nonsense_Mutation	SNP	G	G	T	rs138461187	by1000genomes;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	11	10	1	0	0
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48790325	48790325	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	0	2	0	0
PCMTD1	115294	bcgsc.ca	37	8	52733102	52733102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	5	0	0	0
PCMTD1	115294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52744112	52744112	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	7	0	0	0
SLCO5A1	81796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70591644	70591644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LOC100132891	0	broad.mit.edu	37	8	72755814	72755814	+	RNA	SNP	G	G	T	rs10101759	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	72973992	72973992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PI15	51050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	75737605	75737605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SLC10A5	347051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82607084	82607084	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
RMDN1	51115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87519275	87519275	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	7	0	0	0
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95538629	95538629	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	1	2	0	0
GDF6	392255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	97157039	97157039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100733234	100733234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	2	0	0	0
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103284937	103284937	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	2	1	1	0	0
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116632191	116632191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SQLE	6713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126030309	126030309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
THEM6	51337	broad.mit.edu;bcgsc.ca	37	8	143816819	143816819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	16	7	9	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PYCRL	65263	bcgsc.ca	37	8	144687947	144687947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	20	4	16	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	18	0	18	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144996263	144996263	+	Silent	SNP	G	G	A	rs11988293	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	1	11	0	0
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4583052	4583052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
RANBP6	26953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6013222	6013222	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	14	6	8	0	0
LURAP1L	286343	hgsc.bcm.edu	37	9	12775864	12775864	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12821687	12821687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	12	8	4	0	0
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	13176296	13176296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	13188983	13188983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BNC2	54796	broad.mit.edu;ucsc.edu	37	9	16437424	16437424	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MLLT3	4300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20414048	20414048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	5	3	0	0
FOCAD	54914	broad.mit.edu	37	9	20929356	20929356	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
IFNW1	3467	broad.mit.edu	37	9	21141179	21141179	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	10	3	7	0	0
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32430444	32430444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	27	24	3	0	0
CNTFR	1271	broad.mit.edu;ucsc.edu	37	9	34568922	34568922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35682151	35682151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	9	8	1	0	0
SPAG8	26206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35810505	35810505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
RECK	8434	broad.mit.edu;bcgsc.ca	37	9	36102095	36102095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GLIPR2	152007	ucsc.edu	37	9	36147782	36147782	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SPATA31A3	727830	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	40705691	40705691	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
APBA1	320	hgsc.bcm.edu	37	9	72131953	72131953	+	Silent	SNP	C	C	T	rs149995729		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAMDC2	256691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72741314	72741314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
TRPM3	80036	broad.mit.edu	37	9	73240174	73240174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TRPM6	140803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77411734	77411734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
VPS13A	23230	ucsc.edu	37	9	79968553	79968553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SPATA31D5P	347127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84531593	84531593	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ANKRD19P	138649	broad.mit.edu;bcgsc.ca	37	9	95572091	95572091	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
C9orf3	84909	broad.mit.edu	37	9	97522087	97522087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ERCC6L2	375748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98728916	98728916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
TDRD7	23424	broad.mit.edu;bcgsc.ca	37	9	100234690	100234690	+	Silent	SNP	G	G	T	rs200338871	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	8	0	0	0
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	101606450	101606450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MRPL50	54534	broad.mit.edu;bcgsc.ca	37	9	104152827	104152827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	62	60	2	0	0
OR13C5	138799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107361140	107361140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TAL2	6887	broad.mit.edu	37	9	108425002	108425002	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
DNAJC25-GNG10	552891	hgsc.bcm.edu	37	9	114393784	114393784	+	Missense_Mutation	SNP	G	G	A	rs10980984	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	3	2	0	0
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114508596	114508596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
AMBP	259	broad.mit.edu	37	9	116840418	116840418	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
PAPPA	5069	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	118950037	118950037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PSMD5	5711	broad.mit.edu	37	9	123580434	123580434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PHF19	26147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123624881	123624881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	4	4	0	0	0
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130427557	130427557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	15	13	2	0	0
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131559410	131559410	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	23	20	3	0	0
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134501621	134501621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	22	18	4	0	0
VAV2	7410	broad.mit.edu;bcgsc.ca	37	9	136648640	136648640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	38	38	0	0	0
ARSH	347527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2942061	2942061	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MXRA5	25878	broad.mit.edu;bcgsc.ca	37	X	3241451	3241451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	3	3	0	0	0
MXRA5	25878	bcgsc.ca	37	X	3242694	3242694	+	Missense_Mutation	SNP	C	C	A	rs112265369	bycluster;byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	10106875	10106875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	7	7	0	0	0
MID1	4281	ucsc.edu;bcgsc.ca	37	X	10535274	10535274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
FRMPD4	9758	bcgsc.ca	37	X	12736870	12736870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23019100	23019100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SUPT20HL1	100130302	ucsc.edu;bcgsc.ca	37	X	24382644	24382644	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAGEB10	139422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	27840275	27840275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MAGEB2	4113	broad.mit.edu;bcgsc.ca	37	X	30237541	30237541	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DMD	1756	broad.mit.edu	37	X	31697546	31697546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DMD	1756	broad.mit.edu;bcgsc.ca	37	X	32407761	32407761	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	40568698	40568698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	8	0	0	0
GPR34	2857	broad.mit.edu;bcgsc.ca	37	X	41554930	41554930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
MAOA	4128	bcgsc.ca	37	X	43590512	43590512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	80	70	10	0	0
CDK16	5127	ucsc.edu;bcgsc.ca	37	X	47086026	47086026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	118	91	27	0	0
ZNF182	7569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47836739	47836739	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	6	3	3	0	0
TBC1D25	4943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48417292	48417292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
WDR45	11152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48934319	48934319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	114	114	0	0	0
USP27X	389856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49646192	49646192	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	17	17	0	0	0
CCNB3	85417	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50052072	50052072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
SSX8	280659	bcgsc.ca	37	X	52657537	52657537	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53607986	53607986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AMER1	139285	ucsc.edu	37	X	63409906	63409906	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
MTMR8	55613	broad.mit.edu	37	X	63579298	63579298	+	Missense_Mutation	SNP	C	C	A	rs201096276	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
AR	367	broad.mit.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	rs200185441		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
YIPF6	286451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	67741213	67741213	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
YIPF6	286451	broad.mit.edu	37	X	67751770	67751770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	21	8	13	0	0
STARD8	9754	ucsc.edu;bcgsc.ca	37	X	67940921	67940921	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	0	1	0	0
MED12	9968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70352313	70352313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	26	24	2	0	0
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70596893	70596893	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	70598293	70598293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BCYRN1	618	bcgsc.ca	37	X	70779394	70779394	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
BCYRN1	618	bcgsc.ca	37	X	70883453	70883453	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
CDX4	1046	hgsc.bcm.edu;broad.mit.edu	37	X	72667507	72667507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
ATRX	546	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	76918898	76918898	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
SATL1	340562	bcgsc.ca	37	X	84362768	84362768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
SYTL4	94121	bcgsc.ca	37	X	99941088	99941088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
NOX1	27035	ucsc.edu;bcgsc.ca	37	X	100105369	100105369	+	Missense_Mutation	SNP	T	T	C	rs35468984	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
XKRX	402415	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100169962	100169962	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
DRP2	1821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100500030	100500030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
VSIG1	340547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107320376	107320376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	X	107829959	107829959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ALG13	79868	ucsc.edu;bcgsc.ca	37	X	110980045	110980045	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	5	0	0	0
ZBTB33	10009	broad.mit.edu;bcgsc.ca	37	X	119387850	119387850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ELF4	2000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	129205092	129205092	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	8	3	5	0	0
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	130411109	130411109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
TFDP3	51270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	132352122	132352122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GPR112	139378	bcgsc.ca	37	X	135427145	135427145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
GABRQ	55879	bcgsc.ca	37	X	151821117	151821117	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PNMA3	29944	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152226031	152226031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	5	5	0	0	0
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152827696	152827696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PLXNB3	5365	bcgsc.ca	37	X	153042778	153042778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	1	1	0	0	0
ARHGAP4	393	bcgsc.ca	37	X	153184648	153184648	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
KRTAP4-3	85290	bcgsc.ca	37	17	39324229	39324230	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42907077	42907078	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	0	0	0	0	0
