Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
GABRD	2563	bcgsc.ca	37	1	1957037	1957037	+	Silent	SNP	T	T	C	rs2229110	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PEX10	5192	bcgsc.ca	37	1	2338015	2338015	+	Missense_Mutation	SNP	T	T	C	rs34154371	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	18	2	16	0	0
SPRR3	6707	bcgsc.ca	37	1	152975763	152975763	+	Silent	SNP	C	C	A	rs1977734	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	29	20	0	0	9
CHIT1	1118	bcgsc.ca	37	1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	rs201320385	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	2	2	0	0	0
IKBKE	9641	bcgsc.ca	37	1	206650065	206650065	+	Silent	SNP	A	A	G	rs41296034	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
OR2T11	127077	ucsc.edu;bcgsc.ca	37	1	248789753	248789753	+	Missense_Mutation	SNP	G	G	C	rs28555577	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
OR2T27	403239	bcgsc.ca	37	1	248813280	248813280	+	Silent	SNP	C	C	T	rs116125618	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
TUBB8	347688	broad.mit.edu	37	10	95170	95170	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
MYO3A	53904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26357698	26357698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
AGAP11	119385	bcgsc.ca	37	10	88768253	88768253	+	Missense_Mutation	SNP	A	A	G	rs2641563	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	1	1	0	0	0
LGI1	9211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95537350	95537350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
CTBP2	1488	ucsc.edu	37	10	126715075	126715075	+	Silent	SNP	T	T	C	rs3781413	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
MUC6	4588	bcgsc.ca	37	11	1017710	1017710	+	Missense_Mutation	SNP	G	G	T	rs113964902		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
OR52E6	390078	broad.mit.edu	37	11	5862278	5862278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
DNHD1	144132	broad.mit.edu	37	11	6569896	6569896	+	Missense_Mutation	SNP	G	G	A	rs11606889	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
LOC494141	0	bcgsc.ca	37	11	18231915	18231915	+	RNA	SNP	T	T	C	rs2251440	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
SAA2-SAA4	100528017	broad.mit.edu	37	11	18257405	18257405	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	2	2	0	0	0
TENM4	26011	bcgsc.ca	37	11	78372536	78372536	+	Silent	SNP	G	G	A	rs2277277	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	1	1	0	0	0
MTMR2	8898	hgsc.bcm.edu	37	11	95595266	95595434	+	Frame_Shift_Del	DEL	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
ZC3H12C	85463	bcgsc.ca	37	11	110035301	110035301	+	Silent	SNP	A	A	G	rs1026607	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	1	1	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	806	506	299	0	1
PA2G4	5036	broad.mit.edu;bcgsc.ca	37	12	56504205	56504205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	178	175	3	0	0
CCDC62	84660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123273380	123273380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
NCOR2	9612	ucsc.edu	37	12	124856618	124856618	+	Silent	SNP	A	A	G	rs7961196	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	3	1	2	0	0
PABPC3	5042	bcgsc.ca	37	13	25671122	25671122	+	Silent	SNP	C	C	T	rs79072440	bycluster;byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	265	0	265	0	0
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295677	20295677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295722	20295722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20295790	20295790	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295819	20295819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
OR4N2	390429	hgsc.bcm.edu;bcgsc.ca	37	14	20295862	20295862	+	Silent	SNP	C	C	T	rs139052676	byfrequency;alternate_allele	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23456429	23456429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	2	2	0	0	0
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24799400	24799400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	2	2	0	0	0
INSM2	84684	broad.mit.edu	37	14	36004658	36004658	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45564512	45564512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PRKCH	5583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61917623	61917623	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
WDR25	79446	bcgsc.ca	37	14	100996312	100996312	+	Silent	SNP	T	T	C	rs13065	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	23	23	0	0	0
LOC727924	0	bcgsc.ca	37	15	22297880	22297880	+	RNA	SNP	A	A	G	rs11853641	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
LOC646278	0	bcgsc.ca	37	15	29060661	29060661	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
SPTBN5	51332	broad.mit.edu	37	15	42167249	42167249	+	Silent	SNP	T	T	C	rs62002142		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100871168	100871168	+	Missense_Mutation	SNP	C	C	T	rs143689354	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	2	2	0	0	0
MLST8	64223	ucsc.edu	37	16	2256104	2256104	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	15	10	5	0	0
NLRC5	84166	broad.mit.edu;bcgsc.ca	37	16	57101716	57101716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	14	13	1	0	0
SPG7	6687	hgsc.bcm.edu	37	16	89574945	89574945	+	Silent	SNP	G	G	A	rs187330648	by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	2	1	1	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	1	0	1	0	0
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9501596	9501596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
MYOCD	93649	hgsc.bcm.edu;bcgsc.ca	37	17	12626174	12626174	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
CIDEA	1149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12274230	12274230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50976874	50976874	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
TMEM259	91304	hgsc.bcm.edu	37	19	1010396	1010396	+	Missense_Mutation	SNP	G	G	C	rs77868901		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	139	0	139	0	0
TJP3	27134	hgsc.bcm.edu	37	19	3739077	3739077	+	Missense_Mutation	SNP	C	C	T	rs138219655		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
TJP3	27134	hgsc.bcm.edu	37	19	3739107	3739107	+	Missense_Mutation	SNP	C	C	T	rs35628485	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13319693	13319693	+	Silent	SNP	A	A	G	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
DYRK1B	9149	broad.mit.edu	37	19	40316857	40316857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	54	54	0	0	0
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	1	1	0	0	0
GPR32	2854	bcgsc.ca	37	19	51274851	51274851	+	Missense_Mutation	SNP	A	A	C	rs78840344		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	4	4	0	0	0
MIR520C	574476	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54210730	54210730	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PRKD3	23683	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	37543587	37543587	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
SIX3	6496	hgsc.bcm.edu	37	2	45171842	45171842	+	Silent	SNP	A	A	G	rs62840660	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PRR21	643905	bcgsc.ca	37	2	240982103	240982103	+	Silent	SNP	A	A	G	rs74344384	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
SNPH	9751	hgsc.bcm.edu	37	20	1286662	1286662	+	Silent	SNP	G	G	A	rs62187495	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	1	1	0	0	0
PLCB4	5332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9353694	9353694	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623943	29623943	+	RNA	SNP	C	C	A	rs71271361		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
KIF3B	9371	bcgsc.ca	37	20	30915461	30915461	+	Silent	SNP	T	T	C	rs1129012	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
COL20A1	57642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61957493	61957493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46929331	46929331	+	Missense_Mutation	SNP	C	C	G	rs187670025		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	22	14	8	0	0
NEFH	4744	bcgsc.ca	37	22	29885861	29885861	+	Silent	SNP	T	T	C	rs165923	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	11	11	0	0	0
FBXO7	25793	bcgsc.ca	37	22	32875190	32875190	+	Missense_Mutation	SNP	G	G	A	rs11107	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	3	3	0	0	0
GRM7	2917	bcgsc.ca	37	3	7620789	7620789	+	Silent	SNP	T	T	C	rs1485175	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395586	49395586	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	110	109	1	0	0
DPPA2	151871	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	109027035	109027035	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
ADPRH	141	broad.mit.edu	37	3	119306669	119306669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
MAATS1	89876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119462961	119462961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	3	3	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
COL6A6	131873	bcgsc.ca	37	3	130361856	130361856	+	Missense_Mutation	SNP	G	G	A	rs16830494	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
MUC20	200958	bcgsc.ca	37	3	195453257	195453257	+	Missense_Mutation	SNP	G	G	A	rs3828406	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	3	3	0	0	0
PAK2	5062	bcgsc.ca	37	3	196509544	196509544	+	Silent	SNP	T	T	C	rs79361419	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PAK2	5062	bcgsc.ca	37	3	196509577	196509577	+	Missense_Mutation	SNP	C	C	G	rs76714248	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	11	7	4	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389130	1389130	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	9	6	3	0	0
ANKRD17	26057	ucsc.edu;bcgsc.ca	37	4	73956553	73956553	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	17	14	3	0	0
SDAD1	55153	bcgsc.ca	37	4	76878716	76878716	+	Missense_Mutation	SNP	G	G	C	rs2242471	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	21	21	0	0	0
PDLIM4	8572	hgsc.bcm.edu	37	5	131607588	131607588	+	Missense_Mutation	SNP	G	G	T	rs4877	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PCDHA8	56140	broad.mit.edu;bcgsc.ca	37	5	140221312	140221312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PCDHB8	56128	hgsc.bcm.edu	37	5	140559342	140559342	+	Missense_Mutation	SNP	T	T	C	rs138970173	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	29	28	1	0	0
PCDHB12	56124	hgsc.bcm.edu	37	5	140590139	140590139	+	Missense_Mutation	SNP	G	G	A	rs61741192	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	61	60	1	0	0
C6orf136	221545	hgsc.bcm.edu	37	6	30615260	30615260	+	Silent	SNP	C	C	T	rs3132594	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	3	1	2	0	0
C6orf15	29113	bcgsc.ca	37	6	31079994	31079994	+	Missense_Mutation	SNP	C	C	T	rs2233976	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
HLA-B	3106	bcgsc.ca;mdanderson.org	37	6	31324100	31324100	+	Missense_Mutation	SNP	G	G	T	rs1050654	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	384	384	0	0	0
HLA-B	3106	broad.mit.edu	37	6	31324604	31324604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PBX2	5089	hgsc.bcm.edu	37	6	32157639	32157639	+	Silent	SNP	C	C	T	rs169503	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	1	0	1	0	0
CNPY3	10695	hgsc.bcm.edu;broad.mit.edu	37	6	42897358	42897363	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	TGCTGC	TGCTGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
HTR1B	3351	bcgsc.ca	37	6	78172260	78172260	+	Silent	SNP	C	C	G	rs6296	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	2	2	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	144878365	144878365	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
SYNE1	23345	bcgsc.ca	37	6	152576080	152576080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	153296478	153296481	+	Frame_Shift_Del	DEL	TAAG	TAAG	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	TAAG	TAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
LPAL2	80350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160903734	160903734	+	RNA	SNP	G	G	A	rs147325355	by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	4	0	4	0	0
OR2AE1	81392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99473846	99473846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
ZC3HC1	51530	ucsc.edu;bcgsc.ca	37	7	129664312	129664312	+	Missense_Mutation	SNP	T	T	C	rs1464890	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	20	20	0	0	0
TAS2R38	5726	bcgsc.ca	37	7	141672705	141672705	+	Missense_Mutation	SNP	G	G	A	rs1726866	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216707	3216707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
EGR3	1960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22548147	22548147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998514	144998514	+	Silent	SNP	C	C	T	rs75586449	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	7	1	6	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998793	144998793	+	Silent	SNP	C	C	T	rs186670912	by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	9	3	6	0	0
KIAA1045	23349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34976195	34976195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
FRMPD1	22844	ucsc.edu;bcgsc.ca	37	9	37745413	37745413	+	Silent	SNP	G	G	A	rs3747541	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PTGER4P2-CDK2AP2P2	442421	bcgsc.ca	37	9	66499739	66499739	+	RNA	SNP	G	G	A	rs199935942		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
SLC34A3	142680	hgsc.bcm.edu	37	9	140130532	140130532	+	Silent	SNP	T	T	C	rs144666114	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069468	141069468	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069495	141069495	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
ASMTL	8623	broad.mit.edu;bcgsc.ca	37	X	1538001	1538001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	1	1	0	0	0
PDK3	5165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24517001	24517001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
PCSK1N	27344	hgsc.bcm.edu	37	X	48690749	48690749	+	Silent	SNP	C	C	T	rs11538178		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
TTC3P1	286495	bcgsc.ca	37	X	74961968	74961968	+	RNA	SNP	G	G	A	rs5938183	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
KIAA1210	57481	broad.mit.edu	37	X	118219366	118219366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
HLA-B	3106	broad.mit.edu	37	6	31324601	31324602	+	Frame_Shift_Ins	INS	-	-	G	rs9281379	bycluster	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	rs139315731	bycluster;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150884636	150884637	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	0	0	0	0	0
