Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	19	0	19	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
RRAGC	64121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39321479	39321479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	7	7	0	0	0
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52943488	52943488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	1	1	0	0	0
SSBP3	23648	broad.mit.edu	37	1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	10	10	0	0	0
C1orf173	127254	broad.mit.edu	37	1	75036922	75036922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
NBPF14	25832	bcgsc.ca	37	1	148004732	148004732	+	Missense_Mutation	SNP	A	A	C	rs77570381		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	88	0	88	0	0
NBPF14	25832	bcgsc.ca	37	1	148004749	148004749	+	Silent	SNP	C	C	T	rs77143638	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	150	131	19	0	0
PEA15	8682	broad.mit.edu;bcgsc.ca	37	1	160182974	160182974	+	Silent	SNP	A	A	C	rs61756023	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	56	53	3	0	0
SWT1	54823	bcgsc.ca	37	1	185240474	185240474	+	Missense_Mutation	SNP	A	A	G	rs12041704	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	2	2	0	0	0
SLC30A1	7779	broad.mit.edu;ucsc.edu	37	1	211749518	211749518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	17	15	2	0	0
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237754280	237754280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70644430	70644430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
OR52K2	119774	broad.mit.edu	37	11	4470956	4470956	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
OR10W1	81341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	58034971	58034971	+	Silent	SNP	C	C	T	rs200368241		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	29	0	29	0	0
TRIM49C	642612	broad.mit.edu	37	11	89774252	89774252	+	Missense_Mutation	SNP	G	G	A	rs672762	bycluster;bysubmitter	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
B4GALNT3	283358	bcgsc.ca	37	12	657404	657404	+	Missense_Mutation	SNP	G	G	A	rs11063529	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
CLEC4C	170482	bcgsc.ca	37	12	7894056	7894056	+	Missense_Mutation	SNP	G	G	A	rs73056605	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
TBX5	6910	broad.mit.edu	37	12	114793360	114793360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	6	0	6	0	0
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23906646	23906646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	1	1	0	0	0
PABPC3	5042	bcgsc.ca	37	13	25671027	25671027	+	Missense_Mutation	SNP	A	A	G	rs78826513	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	158	158	0	0	0
FRY	10129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32810275	32810275	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	5	5	0	0	0
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	72	72	0	0	0
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	96579505	96579505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
ACIN1	22985	broad.mit.edu	37	14	23528502	23528503	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
NDUFB1	4707	bcgsc.ca	37	14	92588002	92588002	+	Silent	SNP	T	T	G	rs3818263	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	443	443	0	0	0
ARNT2	9915	bcgsc.ca	37	15	80884025	80884025	+	Missense_Mutation	SNP	G	G	A	rs4072568	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	2	2	0	0	0
SRRM2	23524	broad.mit.edu	37	16	2820442	2820442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	327	327	0	0	0
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31477224	31477224	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
RNU6-76	100873777	bcgsc.ca	37	16	33544137	33544137	+	RNA	SNP	C	C	T	rs12931403	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
CES1P2	0	bcgsc.ca	37	16	55776456	55776456	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
KIFC3	3801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	57793684	57793684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	20	20	0	0	0
CSNK2A2	1459	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58200519	58200519	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	23	16	7	0	0
KCNG4	93107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84271024	84271024	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	263682	263682	+	Missense_Mutation	SNP	G	G	A	rs181299622		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	70	52	18	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
POLR2A	5430	bcgsc.ca	37	17	7399866	7399866	+	Silent	SNP	G	G	A	rs2301609	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	2	2	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830459	36830459	+	Missense_Mutation	SNP	G	G	A	rs111565436		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
BTBD17	388419	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72356326	72356326	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
LLGL2	3993	broad.mit.edu	37	17	73565071	73565071	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
DNAH17	8632	broad.mit.edu	37	17	76433833	76433833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
ZNF271	10778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	32886662	32886662	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	6	0	6	0	0
WDR7	23335	broad.mit.edu	37	18	54424373	54424373	+	Missense_Mutation	SNP	G	G	C	rs200902295		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	7	7	0	0	0
DOHH	83475	hgsc.bcm.edu	37	19	3492318	3492318	+	Silent	SNP	G	G	C	rs78287632	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	12	6	6	0	0
FUT3	2525	broad.mit.edu;bcgsc.ca	37	19	5844265	5844265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	13	9	4	0	0
HAPLN4	404037	hgsc.bcm.edu	37	19	19373528	19373553	+	Frame_Shift_Del	DEL	GCCCCACTTACCATCTTGCCCGCGCG	GCCCCACTTACCATCTTGCCCGCGCG	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	GCCCCACTTACCATCTTGCCCGCGCG	GCCCCACTTACCATCTTGCCCGCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	2	0	2	0	0
ZNF229	7772	broad.mit.edu;bcgsc.ca	37	19	44933163	44933163	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	10	10	0	0	0
LMTK3	114783	broad.mit.edu	37	19	49004261	49004261	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
SIGLEC16	400709	broad.mit.edu	37	19	50474960	50474960	+	RNA	SNP	C	C	G	rs201054007	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
DNMT3A	1788	broad.mit.edu	37	2	25469926	25469926	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
DYSF	8291	bcgsc.ca	37	2	71780215	71780215	+	Silent	SNP	T	T	C	rs2303596	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	6	6	0	0	0
LRP2	4036	bcgsc.ca	37	2	170096095	170096095	+	Silent	SNP	C	C	G	rs34915742	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
HOXD4	3233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	177016766	177016766	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124357	217124357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
TIGD1	200765	hgsc.bcm.edu;broad.mit.edu	37	2	233414422	233414422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	6	6	0	0	0
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241066032	241066032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	101	54	47	0	0
ATF4	468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39918189	39918189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	312	27	285	0	0
KLHDC8B	200942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49211828	49211828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	4	1	3	0	0
AMIGO3	386724	broad.mit.edu	37	3	49755684	49755684	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	5	3	2	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554839	52554839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	43	43	0	0	0
EEFSEC	60678	hgsc.bcm.edu	37	3	127872602	127872602	+	Silent	SNP	A	A	G	rs11719546	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	2	0	2	0	0
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132245070	132245070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	45	23	22	0	0
IDUA	3425	hgsc.bcm.edu	37	4	996888	996888	+	Silent	SNP	C	C	T	rs115929690	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56737029	56737029	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	9	8	1	0	0
STBD1	8987	broad.mit.edu	37	4	77231087	77231087	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	42	42	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
FBXO8	26269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175158607	175158607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	36	18	18	0	0
PDZD2	23037	bcgsc.ca	37	5	32074509	32074509	+	Silent	SNP	G	G	A	rs2291113	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
NUP155	9631	broad.mit.edu;bcgsc.ca	37	5	37328505	37328505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	7	6	1	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573548	140573548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	18	18	0	0	0
C5orf52	100190949	broad.mit.edu	37	5	157102159	157102159	+	Missense_Mutation	SNP	G	G	A	rs10051838	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
GPLD1	2822	bcgsc.ca	37	6	24437408	24437408	+	Silent	SNP	G	G	A	rs61733145	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
COL11A2	1302	ucsc.edu;bcgsc.ca	37	6	33138677	33138677	+	Silent	SNP	G	G	A	rs1799911	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
MICAL1	64780	broad.mit.edu;bcgsc.ca	37	6	109767928	109767928	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	1	1	0	0	0
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	7	21892238	21892238	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
HOTTIP	100316868	broad.mit.edu	37	7	27245996	27245997	+	RNA	DEL	CA	CA	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
GHRHR	2692	broad.mit.edu;bcgsc.ca	37	7	31016898	31016898	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
NACAD	23148	broad.mit.edu	37	7	45123900	45123900	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu	37	7	45125700	45125700	+	Missense_Mutation	SNP	C	C	T	rs141784618		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99092230	99092230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	6	1	5	0	0
FAM22F	54754	broad.mit.edu	37	9	97080947	97080948	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
FAM22F	54754	broad.mit.edu	37	9	97080951	97080951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
ND5	0	bcgsc.ca	37	MT	12418	12418	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3229333	3229333	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
ASB12	142689	broad.mit.edu	37	X	63444868	63444868	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	4	4	0	0	0
ARMCX1	51309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100808269	100808269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	36	36	0	0	0
ATP11C	286410	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138901556	138901556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	4	4	0	0	0
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153035385	153035385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
HCFC1	3054	bcgsc.ca	37	X	153215839	153215839	+	Silent	SNP	G	G	A	rs3027875		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	21	21	0	0	0
ESPNP	284729	broad.mit.edu	37	1	17029905	17029906	+	RNA	INS	-	-	A	rs142569124	bycluster	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
NACAD	23148	broad.mit.edu	37	7	45123894	45123895	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
CHMP4C	92421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	82667643	82667644	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
SLC25A37	51312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	23429210	23429211	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	0	0	0	0	0
