Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ESPNP	284729	bcgsc.ca	37	1	17031276	17031276	+	RNA	SNP	T	T	C	rs11260892	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
FAM46B	115572	hgsc.bcm.edu	37	1	27339105	27339105	+	Silent	SNP	C	C	T	rs35810604	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
CLCA3P	9629	bcgsc.ca	37	1	87101375	87101375	+	RNA	SNP	C	C	G	rs2292830	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
DENND2C	163259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115168233	115168233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ANKRD34A	284615	hgsc.bcm.edu;bcgsc.ca	37	1	145474257	145474258	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
HRNR	388697	broad.mit.edu;bcgsc.ca	37	1	152188235	152188235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
RRNAD1	51093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156703977	156703979	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
PEAR1	375033	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156878718	156878718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	6	2	4	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767904	181767904	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
RASSF5	83593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206730911	206730911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	4	4	0	0	0
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226566961	226566961	+	Missense_Mutation	SNP	C	C	T	rs200485374		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	96	75	21	0	0
JMJD4	65094	hgsc.bcm.edu	37	1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	rs7419238		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	2	0	2	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
OR2T2	401992	broad.mit.edu	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ANKRD16	54522	hgsc.bcm.edu	37	10	5931230	5931230	+	Missense_Mutation	SNP	C	C	T	rs3750659	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	0	1	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73571772	73571772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	2	0	2	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	0	1	0	0
ENTPD1-AS1	0	bcgsc.ca	37	10	97816803	97816803	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	0	1	0	0
ZDHHC6	64429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114193036	114193036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	5	5	0	0	0
ENO4	387712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118639436	118639436	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	1	0	0	0
FANK1	92565	hgsc.bcm.edu	37	10	127585212	127585212	+	Missense_Mutation	SNP	A	A	T	rs145156460		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu;bcgsc.ca	37	11	1651116	1651127	+	In_Frame_Del	DEL	GGCCGTGGCTCC	GGCCGTGGCTCC	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
OR51F1	256892	bcgsc.ca	37	11	4790948	4790948	+	Missense_Mutation	SNP	C	C	A	rs11033800	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
OR51F1	256892	bcgsc.ca	37	11	4790951	4790951	+	Missense_Mutation	SNP	A	A	G	rs11033801	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
AGBL2	79841	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47712028	47712028	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56310464	56310464	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
LRRC10B	390205	hgsc.bcm.edu	37	11	61277031	61277031	+	Silent	SNP	C	C	T	rs1139011	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
PACS1	55690	broad.mit.edu	37	11	65988664	65988664	+	Silent	SNP	G	G	A	rs149576765		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	15	15	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KIAA1731	85459	broad.mit.edu;ucsc.edu	37	11	93462779	93462779	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	2	0	2	0	0
ATM	472	broad.mit.edu	37	11	108124536	108124540	+	Splice_Site	DEL	TGAAG	TGAAG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
CADM1	23705	hgsc.bcm.edu	37	11	115375100	115375100	+	Missense_Mutation	SNP	C	C	G	rs112835318		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	63	21	42	0	0
NECAP1	25977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8242868	8242868	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	52	44	8	0	0
GPR19	2842	broad.mit.edu;bcgsc.ca	37	12	12815088	12815088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	1	0	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18641552	18641552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
PDE3A	5139	broad.mit.edu	37	12	20522082	20522084	+	RNA	DEL	AGA	AGA	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	64813853	64813853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
PTPN11	5781	bcgsc.ca	37	12	112940034	112940034	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	29	29	0	0	0
GCN1L1	10985	broad.mit.edu	37	12	120595802	120595804	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	7	5	2	0	0
APEX1	328	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20925557	20925557	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	400	213	186	0	1
AJUBA	84962	broad.mit.edu	37	14	23451230	23451230	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	0	1	0	0
KIAA0586	9786	hgsc.bcm.edu	37	14	58949383	58949383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	3	3	0	0	0
COQ6	51004	bcgsc.ca	37	14	74424938	74424938	+	Silent	SNP	T	T	C	rs3180946	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	13	12	1	0	0
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81743692	81743692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	1	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	56	0	56	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	0	1	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1823054	1823054	+	Missense_Mutation	SNP	C	C	G	rs11552432		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	5	0	5	0	0
NTN3	4917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2523112	2523112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
LOC653786	0	broad.mit.edu	37	16	22588087	22588087	+	RNA	SNP	G	G	C	rs458947		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SCNN1B	6338	ucsc.edu;bcgsc.ca	37	16	23388659	23388659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZNF423	23090	bcgsc.ca	37	16	49672520	49672520	+	Silent	SNP	A	A	G	rs3803665	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
NDRG4	65009	bcgsc.ca	37	16	58545426	58545426	+	Silent	SNP	A	A	G	rs42945	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	14	14	0	0	0
TSNAXIP1	55815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67859153	67859153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZNF23	7571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	71482631	71482631	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	5	4	1	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ATP2C2	9914	broad.mit.edu	37	16	84456017	84456017	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1487	2	1479	1	5
PELP1	27043	bcgsc.ca	37	17	4576620	4576620	+	Silent	SNP	C	C	T	rs55677157	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	16	16	0	0	0
FLJ36000	0	broad.mit.edu	37	17	21911267	21911268	+	RNA	DEL	TG	TG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
NUFIP2	57532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27614591	27614591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	10	6	4	0	0
NR1D1	9572	hgsc.bcm.edu;bcgsc.ca	37	17	38252715	38252716	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39346567	39346567	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KRT33A	3883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39505635	39505635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42288160	42288162	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
CBX4	8535	hgsc.bcm.edu;broad.mit.edu	37	17	77807927	77807927	+	Missense_Mutation	SNP	A	A	G	rs200965379		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	9	9	0	0	0
CARD14	79092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78172210	78172210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SEH1L	81929	hgsc.bcm.edu	37	18	12955467	12955467	+	Silent	SNP	T	T	C	rs2015378		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
IMPACT	55364	broad.mit.edu	37	18	22023012	22023012	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
DSC3	1825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	28605791	28605791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	917526	917526	+	Silent	SNP	A	A	G	rs10407968	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	2	0	2	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	3	0	3	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	39	28	11	0	0
UHRF1	29128	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4950704	4950704	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	14	11	3	0	0
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	5832103	5832103	+	Missense_Mutation	SNP	C	C	T	rs140726017		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11598309	11598309	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	16	16	0	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837417	17837417	+	Silent	SNP	G	G	A	rs138676223		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	14	6	8	0	0
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17838767	17838767	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	37	31	6	0	0
ZNF737	100129842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	20728340	20728340	+	Silent	SNP	A	A	G	rs187919890	by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	2	2	0	0	0
LGI4	163175	hgsc.bcm.edu	37	19	35617513	35617513	+	Silent	SNP	G	G	C	rs77635806		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36211355	36211357	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
LOC100996307	0	bcgsc.ca	37	19	42906271	42906271	+	RNA	SNP	G	G	C	rs35595562	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	20	20	0	0	0
LOC100996307	0	bcgsc.ca	37	19	42906273	42906273	+	RNA	SNP	C	C	G	rs35639038	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	18	18	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	25	12	13	0	0
GPR4	2828	broad.mit.edu	37	19	46094763	46094763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	5	4	1	0	0
PNMAL2	57469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46997582	46997582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	8	5	3	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	34	0	34	0	0
IZUMO2	126123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50666247	50666247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KIR3DX1	90011	ucsc.edu;bcgsc.ca	37	19	55054818	55054818	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	0	1	0	0
FEZ2	9637	hgsc.bcm.edu	37	2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	rs1544655		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	19	0	19	0	0
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74710496	74710496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	14	14	0	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
FAHD2CP	729234	broad.mit.edu	37	2	96687427	96687427	+	RNA	DEL	T	T	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SNRNP200	23020	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	96965141	96965141	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166032830	166032830	+	Silent	SNP	G	G	T	rs112118503	alternate_allele	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
PDE11A	50940	bcgsc.ca	37	2	178762824	178762824	+	Silent	SNP	T	T	C	rs71423514	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179586707	179586707	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	187626567	187626567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	2	2	0	0	0
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	189963460	189963460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
CST3	1471	hgsc.bcm.edu	37	20	23618488	23618488	+	Silent	SNP	G	G	A	rs1055084		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	254	58	196	0	0
VSX1	30813	bcgsc.ca	37	20	25059546	25059546	+	Silent	SNP	T	T	C	rs12480307	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26062225	26062234	+	RNA	DEL	TGCAGACCAG	TGCAGACCAG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	123	99	24	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	92	92	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	89	89	0	0	0
CECR5	27440	hgsc.bcm.edu	37	22	17640022	17640022	+	Silent	SNP	G	G	C	rs11550530		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
CHEK2	11200	broad.mit.edu	37	22	29091840	29091840	+	Missense_Mutation	SNP	T	T	C	rs74751600		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	25	25	0	0	0
SH3BP1	23616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38051288	38051288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38122417	38122417	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	2	2	0	0	0
LMF2	91289	broad.mit.edu;bcgsc.ca	37	22	50946029	50946029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	37	34	3	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266134	41266136	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
NKTR	4820	hgsc.bcm.edu;broad.mit.edu	37	3	42679924	42679926	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
QARS	5859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49136628	49136628	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	197	122	75	0	0
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49155468	49155468	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	8	7	1	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
OR5K3	403277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98110047	98110047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
CCDC14	64770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123633689	123633689	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	28	17	11	0	0
EFCC1	79825	hgsc.bcm.edu	37	3	128720487	128720487	+	Missense_Mutation	SNP	A	A	G	rs1871951	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
PLXND1	23129	hgsc.bcm.edu	37	3	129324982	129324982	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	5	5	0	0	0
MSX1	4487	hgsc.bcm.edu	37	4	4861745	4861745	+	Missense_Mutation	SNP	C	C	G	rs36059701		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	3	2	1	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	0	1	0	0
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	22390318	22390319	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
LOC344967	0	broad.mit.edu	37	4	40045340	40045340	+	RNA	SNP	G	G	C	rs17439810	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KIAA1211	57482	bcgsc.ca	37	4	57190356	57190356	+	Silent	SNP	G	G	A	rs7695701	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	1	0	0	0
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138442524	138442524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	3	3	0	0	0
FAM149A	25854	hgsc.bcm.edu	37	4	187077240	187077240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	5	5	0	0	0
FAT1	2195	bcgsc.ca	37	4	187522528	187522528	+	Silent	SNP	C	C	T	rs2289550	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	44	44	0	0	0
PLK2	10769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	57755592	57755592	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	37	26	11	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
HSPA4	3308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132406071	132406072	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
PCDHA3	56145	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182806	140182806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
PWWP2A	114825	hgsc.bcm.edu	37	5	159546013	159546013	+	Missense_Mutation	SNP	T	T	C	rs56806495	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	0	1	0	0
ECI2	10455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4116248	4116248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	552	418	134	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	8	0	8	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	8	0	8	0	0
RNF144B	255488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	18459916	18459916	+	Silent	SNP	C	C	A	rs139497819		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
BTN2A2	10385	broad.mit.edu	37	6	26392515	26392515	+	Missense_Mutation	SNP	G	G	C	rs2072803	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	3	3	0	0	0
LY6G5C	80741	broad.mit.edu	37	6	31646904	31646904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
MSH5-SAPCD1	100532732	broad.mit.edu	37	6	31733223	31733225	+	RNA	DEL	AAC	AAC	-	rs72186188	alternate_allele	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31922199	31922199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	121	93	28	0	0
PKHD1	5314	broad.mit.edu	37	6	51720866	51720866	+	Missense_Mutation	SNP	G	G	T	rs78361537	byfrequency;alternate_allele	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KHDC1L	100129128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	73935030	73935032	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
KIAA1009	22832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	84896081	84896083	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130762220	130762220	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	8	4	4	0	0
TAAR9	134860	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132860125	132860125	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SERAC1	84947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158569912	158569912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	8	8	0	0	0
TCP10	6953	broad.mit.edu;bcgsc.ca	37	6	167787940	167787940	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SUN1	23353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	900013	900014	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	8	0	8	0	0
RBAK	57786	broad.mit.edu	37	7	5104585	5104585	+	Missense_Mutation	SNP	G	G	A	rs149739845	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	5	5	0	0	0
TNRC18	84629	bcgsc.ca	37	7	5347914	5347914	+	Silent	SNP	G	G	A	rs11554710	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	40	40	0	0	0
USP42	84132	bcgsc.ca	37	7	6189780	6189780	+	Silent	SNP	T	T	C	rs3764814	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	7	7	0	0	0
WIPF3	644150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	29923752	29923752	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	1	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	14	0	14	0	0
AVL9	23080	bcgsc.ca	37	7	32598630	32598630	+	Missense_Mutation	SNP	T	T	A	rs2290213	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	14	14	0	0	0
NT5C3A	0	bcgsc.ca	37	7	33060946	33060946	+	Silent	SNP	A	A	G	rs3750117	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	21	21	0	0	0
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43916339	43916340	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91793979	91793979	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
EPHB4	2050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100416169	100416169	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	16	11	5	0	0
UFSP1	402682	broad.mit.edu	37	7	100486576	100486576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	2	2	0	0	0
RBM33	155435	bcgsc.ca	37	7	155530954	155530954	+	Silent	SNP	T	T	C	rs2178428	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	1	0	0	0
DLC1	10395	hgsc.bcm.edu;broad.mit.edu	37	8	12943918	12943919	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
OPRK1	4986	hgsc.bcm.edu	37	8	54163562	54163562	+	Silent	SNP	C	C	A	rs1051660	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ANKRD46	157567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101540156	101540156	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	18	18	0	0	0
TMEM74	157753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109796810	109796810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	48	0	48	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	4	0	4	0	0
CDKN2A	1029	broad.mit.edu;bcgsc.ca	37	9	21974723	21974738	+	Frame_Shift_Del	DEL	CCCGCCTCCAGCAGCG	CCCGCCTCCAGCAGCG	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SPATA31D5P	347127	broad.mit.edu	37	9	84533206	84533206	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88938270	88938270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	1	0	0	0
CCDC180	0	broad.mit.edu	37	9	100079354	100079354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
GABBR2	9568	bcgsc.ca	37	9	101068580	101068580	+	Silent	SNP	G	G	A	rs2304389	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs34222232	alternate_allele	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
MAP3K15	389840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19428068	19428068	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	5	5	0	0	0
SUPT20HL1	100130302	bcgsc.ca	37	X	24382429	24382443	+	In_Frame_Del	DEL	CCTGCTCCTGCTCTA	CCTGCTCCTGCTCTA	-	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	CCTGCTCCTGCTCTA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SUPT20HL1	100130302	bcgsc.ca	37	X	24382453	24382453	+	Missense_Mutation	SNP	G	G	C	rs112697166		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37028425	37028425	+	Missense_Mutation	SNP	A	A	G	rs145580328	byfrequency	TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	56591776	56591776	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	40	40	0	0	0
FLJ44635	0	bcgsc.ca	37	X	71379853	71379853	+	Silent	SNP	C	C	T	rs7880917		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	3	3	0	0	0
RBM41	55285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106358708	106358708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	1	1	0	0	0
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110395637	110395637	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
AVPR2	554	broad.mit.edu	37	X	153171451	153171451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26062257	26062258	+	RNA	INS	-	-	GGCC	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	51144507	51144508	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
SNORD35A	26816	bcgsc.ca	37	19	49994439	49994440	+	RNA	DNP	GA	GA	AT	novel		TCGA-OR-A5JM-01A-11D-A29I-10	TCGA-OR-A5JM-10B-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a8935e4c-a863-4168-82a5-bcaaaf194e6d	4f8cbee5-63de-4167-8bd7-530ad1d3d2a0	0	0	0	0	0
