Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
GNB1	2782	broad.mit.edu	37	1	1737963	1737963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	77	76	0	0	1
PDPN	10630	broad.mit.edu	37	1	13933776	13933776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	5	5	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
EPHA10	284656	hgsc.bcm.edu	37	1	38227086	38227086	+	Missense_Mutation	SNP	A	A	T	rs4653328	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
KCNQ4	9132	bcgsc.ca	37	1	41288017	41288017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
FOXD3	27022	hgsc.bcm.edu	37	1	63788951	63788951	+	Silent	SNP	C	C	A	rs2274187	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
WNT2B	7482	hgsc.bcm.edu	37	1	113051909	113051909	+	Missense_Mutation	SNP	G	G	A	rs36006679		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
GON4L	54856	broad.mit.edu	37	1	155733245	155733245	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	6	6	0	0	0
GON4L	54856	broad.mit.edu	37	1	155733257	155733257	+	Silent	SNP	T	T	C	rs607834	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	1	0	0	0
F5	2153	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169526030	169526030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	2	1	1	0	0
GPRIN2	9721	ucsc.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs9422022	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
LIPM	340654	broad.mit.edu	37	10	90580144	90580144	+	Silent	SNP	C	C	T	rs10788615	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
METTL10	399818	hgsc.bcm.edu	37	10	126480361	126480361	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	5	4	1	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219036	134219036	+	Silent	SNP	G	G	A	rs11817589	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	10	10	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	8	8	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651189	1651192	+	Frame_Shift_Del	DEL	CCGG	CCGG	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
KRTAP5-5	439915	bcgsc.ca	37	11	1651241	1651241	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
PRKCDBP	112464	hgsc.bcm.edu	37	11	6341365	6341365	+	Silent	SNP	C	C	T	rs11544764	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	107	6	100	0	1
PRKCDBP	112464	hgsc.bcm.edu	37	11	6341397	6341397	+	Missense_Mutation	SNP	C	C	T	rs10839551	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	129	7	122	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751604	+	In_Frame_Del	DEL	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
MTNR1B	4544	hgsc.bcm.edu	37	11	92702962	92702962	+	Missense_Mutation	SNP	G	G	A	rs8192552	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
APOLD1	81575	hgsc.bcm.edu	37	12	12939892	12939892	+	Missense_Mutation	SNP	G	G	A	rs4763876		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ARNTL2	56938	bcgsc.ca	37	12	27553566	27553566	+	Missense_Mutation	SNP	A	A	G	rs1037921	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	3	3	0	0	0
FOXN4	121643	hgsc.bcm.edu	37	12	109719559	109719559	+	Missense_Mutation	SNP	C	C	T	rs61741949	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
CCDC42B	387885	broad.mit.edu	37	12	113589762	113589762	+	Silent	SNP	A	A	G	rs61738692	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124345570	124345570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
C14orf39	317761	bcgsc.ca	37	14	60903757	60903757	+	Missense_Mutation	SNP	G	G	A	rs1254319	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ALDH6A1	4329	hgsc.bcm.edu;bcgsc.ca	37	14	74534125	74534125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	12	11	1	0	0
RIN3	79890	hgsc.bcm.edu	37	14	93154540	93154540	+	Silent	SNP	C	C	T	rs71461983	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	41	25	16	0	0
LGMN	5641	bcgsc.ca	37	14	93170993	93170993	+	Silent	SNP	C	C	T	rs9791	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
CEP170B	283638	ucsc.edu	37	14	105349388	105349388	+	Silent	SNP	A	A	C	rs2028414	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
LOC646214	0	bcgsc.ca	37	15	21937334	21937334	+	RNA	SNP	A	A	G	rs8035380	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	6	6	0	0	0
PHGR1	644844	hgsc.bcm.edu	37	15	40648372	40648372	+	Silent	SNP	T	T	C	rs12900982	byfrequency;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	RNA	SNP	T	T	C	rs79284655	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	52	0	52	0	0
RNU6-76	100873777	bcgsc.ca	37	16	33544213	33544213	+	RNA	SNP	G	G	A	rs28592030	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	rs71395304	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
RILP	83547	hgsc.bcm.edu	37	17	1553040	1553040	+	Missense_Mutation	SNP	C	C	T	rs200942821		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1583078	1583078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	3	3	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
GIT1	28964	bcgsc.ca	37	17	27904711	27904711	+	Silent	SNP	G	G	A	rs11080105	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	11	11	0	0	0
KRTAP4-3	85290	ucsc.edu;bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
SDK2	54549	broad.mit.edu	37	17	71386527	71386527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
NPTX1	4884	hgsc.bcm.edu	37	17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	rs144443274		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
TGIF1	7050	broad.mit.edu	37	18	3452223	3452223	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
POLRMT	5442	hgsc.bcm.edu	37	19	621561	621561	+	Missense_Mutation	SNP	C	C	A	rs10421235		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	5	3	2	0	0
LPPR3	0	hgsc.bcm.edu	37	19	813220	813220	+	Missense_Mutation	SNP	T	T	C	rs351994		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	3	0	3	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	9	9	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	6	6	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619348	1619348	+	Silent	SNP	G	G	A	rs1052696	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	8	8	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619350	1619350	+	Missense_Mutation	SNP	C	C	T	rs1052692	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	8	8	0	0	0
DOT1L	84444	hgsc.bcm.edu	37	19	2220170	2220170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	4	4	0	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4531658	4531658	+	Silent	SNP	G	G	A	rs138772557	by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	1	0	0	0
OR7G1	125962	bcgsc.ca	37	19	9225685	9225685	+	Missense_Mutation	SNP	T	T	C	rs2195951	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
KLF1	10661	hgsc.bcm.edu	37	19	12996500	12996500	+	Missense_Mutation	SNP	A	A	G	rs2072596	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876464	38876464	+	Missense_Mutation	SNP	C	C	G	rs11083455		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	11	6	5	0	0
RNU6-66	100873770	broad.mit.edu	37	19	46808394	46808394	+	RNA	DEL	T	T	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56000809	56000809	+	Silent	SNP	C	C	T	rs142097230	by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56000896	56000896	+	Silent	SNP	G	G	T	rs62130160	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481155	1481155	+	Missense_Mutation	SNP	G	G	T	rs2280132	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	4	0	4	0	0
NT5C1B	93034	hgsc.bcm.edu	37	2	18766156	18766156	+	Nonsense_Mutation	SNP	G	G	T	rs61742596	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	1	0	0	0
TTC31	64427	bcgsc.ca	37	2	74717206	74717206	+	Missense_Mutation	SNP	C	C	T	rs202055795		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	6	6	0	0	0
ATOH8	84913	hgsc.bcm.edu	37	2	85981761	85981761	+	Missense_Mutation	SNP	T	T	C	rs17851881		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	0	1	0	0
TEKT4	150483	hgsc.bcm.edu	37	2	95539855	95539855	+	Splice_Site	SNP	T	T	G	rs201662522	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	0	1	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	2	1	1	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
RAB3GAP1	22930	ucsc.edu	37	2	135926240	135926240	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	41	33	8	0	0
SP5	389058	hgsc.bcm.edu	37	2	171572937	171572937	+	Missense_Mutation	SNP	A	A	T	rs199988182	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	223782837	223782837	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	5	4	1	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274475	233274475	+	Missense_Mutation	SNP	C	C	A	rs56080708	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ESPNL	339768	hgsc.bcm.edu	37	2	239009336	239009336	+	Silent	SNP	G	G	A	rs61744770	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	3	0	3	0	0
FASTKD5	60493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	3128060	3128060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	15	15	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	0	1	0	0
FRG1B	284802	bcgsc.ca	37	20	29623164	29623164	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	128	128	0	0	0
MROH8	140699	bcgsc.ca	37	20	35783494	35783494	+	Missense_Mutation	SNP	T	T	C	rs1615246	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	2	0	2	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	245	245	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	244	243	1	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020669	46020670	+	Splice_Site	DEL	AG	AG	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
MRPL40	64976	hgsc.bcm.edu	37	22	19422330	19422330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	112	112	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388817	1388817	+	Missense_Mutation	SNP	C	C	G	rs71299249	alternate_allele	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	90	90	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	89	89	0	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495095	3495095	+	Missense_Mutation	SNP	G	G	A	rs9684786	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	0	1	0	0
CXCL3	2921	hgsc.bcm.edu	37	4	74904296	74904296	+	Missense_Mutation	SNP	G	G	T	rs182216932		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	35	35	0	0	0
ADH1A	124	ucsc.edu	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	551	1	548	2	0
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160252876	160252876	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	5	2	3	0	0
PDLIM3	27295	broad.mit.edu;bcgsc.ca	37	4	186456520	186456520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	2	2	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	0	1	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	3	0	3	0	0
ADAMTS6	11174	hgsc.bcm.edu;bcgsc.ca	37	5	64468661	64468661	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797105	128797105	+	Silent	SNP	G	G	A	rs72663400	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222697	140222697	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	24	14	10	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574170	140574175	+	In_Frame_Del	DEL	AGGCCG	AGGCCG	-	rs58244182	bycluster;alternate_allele	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
HK3	3101	bcgsc.ca	37	5	176318043	176318043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31323953	31323960	+	Frame_Shift_Del	DEL	CCAGCTTG	CCAGCTTG	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	CCAGCTTG	CCAGCTTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762803	31762803	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	5	3	2	0	0
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44222996	44222996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	18	18	0	0	0
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
LAMA4	3910	hgsc.bcm.edu	37	6	112460964	112460964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
MAP7	9053	hgsc.bcm.edu	37	6	136682172	136682172	+	Missense_Mutation	SNP	G	G	A	rs2076190	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	2	0	1	1	0
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	146678777	146678777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193565	6193565	+	Missense_Mutation	SNP	A	A	G	rs199569334		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	0	1	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
MFHAS1	9258	hgsc.bcm.edu	37	8	8750467	8750467	+	Silent	SNP	A	A	G	rs1062988		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
SDR16C5	195814	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	57221513	57221513	+	Missense_Mutation	SNP	C	C	G	rs140271354	alternate_allele	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	4	1	3	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ESRP1	54845	bcgsc.ca	37	8	95655596	95655596	+	Silent	SNP	T	T	C	rs72676907	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	1	0	1	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	3	0	3	0	0
DMRT1	1761	hgsc.bcm.edu	37	9	841971	841971	+	Missense_Mutation	SNP	T	T	A	rs3739583	byfrequency	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68455187	68455187	+	RNA	SNP	G	G	C	rs201230786		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68455195	68455195	+	RNA	SNP	A	A	T	rs202017544		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
OMD	4958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	95179219	95179219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
GPR144	347088	hgsc.bcm.edu	37	9	127215336	127215336	+	Silent	SNP	G	G	A	rs144326848	by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
NUP214	8021	broad.mit.edu	37	9	134074122	134074122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	13	13	0	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433664	72433666	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
BCAN	63827	broad.mit.edu	37	1	156630180	156630181	+	RNA	INS	-	-	TGTG	rs112762896	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
EIF3J	8669	hgsc.bcm.edu	37	15	44829394	44829395	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	novel		TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
C21orf58	54058	broad.mit.edu	37	21	47721985	47721986	+	In_Frame_Ins	INS	-	-	TGG	rs71318063	bycluster;by1000genomes	TCGA-OR-A5JO-01A-11D-A29I-10	TCGA-OR-A5JO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f124772a-7861-4fc1-a7cd-da437fbccf02	80f11d6b-2e96-4c29-bd49-ea8f1a398129	0	0	0	0	0
