Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SAMD11	148398	hgsc.bcm.edu	37	1	877831	877831	+	Missense_Mutation	SNP	T	T	C	rs6672356		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
FAM132A	388581	bcgsc.ca	37	1	1179800	1179800	+	Silent	SNP	G	G	A	rs115586508	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
PRAMEF1	65121	bcgsc.ca	37	1	12854139	12854139	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu	37	1	22191512	22191512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
EVA1B	55194	hgsc.bcm.edu	37	1	36787970	36787970	+	Missense_Mutation	SNP	C	C	G	rs199975369		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MEAF6	64769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	37979141	37979141	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ATP6V0B	533	hgsc.bcm.edu	37	1	44440769	44440769	+	Silent	SNP	G	G	C	rs2286241		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
DMRTA2	63950	broad.mit.edu	37	1	50886849	50886849	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
FOXD3	27022	hgsc.bcm.edu	37	1	63788951	63788951	+	Silent	SNP	C	C	A	rs2274187	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
POLR3C	10623	broad.mit.edu;bcgsc.ca	37	1	145594075	145594075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SLC27A3	11000	hgsc.bcm.edu	37	1	153748161	153748161	+	Missense_Mutation	SNP	G	G	C	rs34527123	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
LRRC71	149499	broad.mit.edu;bcgsc.ca	37	1	156902292	156902292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196300332	196300332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KIF14	9928	bcgsc.ca	37	1	200558420	200558420	+	Silent	SNP	C	C	T	rs77213709	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
C1orf116	79098	broad.mit.edu	37	1	207198284	207198284	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
DNAH14	127602	broad.mit.edu	37	1	225195164	225195173	+	Frame_Shift_Del	DEL	TACAGCAAGC	TACAGCAAGC	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
NCOA4	8031	broad.mit.edu	37	10	51585241	51585241	+	Missense_Mutation	SNP	A	A	G	rs61754798	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
PCDH15	65217	broad.mit.edu;bcgsc.ca	37	10	55582016	55582016	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103558728	103558728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	108434909	108434909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
AFAP1L2	84632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	116057115	116057115	+	Missense_Mutation	SNP	C	C	T	rs145837129		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CPXM2	119587	broad.mit.edu	37	10	125651141	125651141	+	Missense_Mutation	SNP	G	G	T	rs201350090		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219036	134219036	+	Silent	SNP	G	G	A	rs11817589	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093112	1093112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
EIF3F	8665	hgsc.bcm.edu	37	11	8009015	8009015	+	Missense_Mutation	SNP	C	C	T	rs1043738	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TTC17	55761	broad.mit.edu	37	11	43469578	43469578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
HNRNPUL2-BSCL2	0	bcgsc.ca	37	11	62488918	62488918	+	RNA	SNP	A	A	G	rs77694397	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64607032	64607032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
RAD9A	5883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67161249	67161249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69256542	69256542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
DISP2	85455	hgsc.bcm.edu	37	15	40660192	40660192	+	Silent	SNP	C	C	T	rs8040755	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
LTK	4058	hgsc.bcm.edu	37	15	41803754	41803754	+	Missense_Mutation	SNP	G	G	A	rs55739813	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
C2CD4B	388125	hgsc.bcm.edu	37	15	62456945	62456945	+	Missense_Mutation	SNP	G	G	A	rs8025811		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
COX5A	9377	hgsc.bcm.edu	37	15	75230320	75230320	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu	37	15	79092715	79092715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MESP2	145873	hgsc.bcm.edu	37	15	90320146	90320146	+	Silent	SNP	G	G	A	rs28546919	bycluster	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
FES	2242	hgsc.bcm.edu	37	15	91433508	91433508	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CACNA1H	8912	hgsc.bcm.edu	37	16	1259249	1259249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
APOBR	55911	hgsc.bcm.edu	37	16	28507412	28507412	+	Silent	SNP	A	A	C	rs62034315		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MTSS1L	92154	broad.mit.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346906	89346906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
HIC1	3090	hgsc.bcm.edu	37	17	1960974	1960974	+	Silent	SNP	C	C	T	rs77393586		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu	37	17	18024266	18024266	+	Missense_Mutation	SNP	T	T	G	rs2955367	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KRT33B	3884	broad.mit.edu	37	17	39521201	39521201	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
AKAP1	8165	broad.mit.edu;bcgsc.ca	37	17	55182842	55182842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SLC14A1	6563	bcgsc.ca	37	18	43319519	43319519	+	Missense_Mutation	SNP	G	G	A	rs1058396	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	917526	917526	+	Silent	SNP	A	A	G	rs10407968	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu	37	19	1062277	1062277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
FAM108A1	81926	hgsc.bcm.edu	37	19	1881453	1881453	+	Missense_Mutation	SNP	A	A	C	rs201595201	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8400651	8400651	+	Silent	SNP	C	C	G	rs11669559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SYDE1	85360	hgsc.bcm.edu	37	19	15220850	15220850	+	Missense_Mutation	SNP	G	G	A	rs2240297		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
UPK1A	11045	broad.mit.edu	37	19	36168763	36168763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258619	48258619	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56000896	56000896	+	Silent	SNP	G	G	T	rs62130160	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21233524	21233524	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
NOTO	344022	hgsc.bcm.edu	37	2	73429808	73429808	+	Missense_Mutation	SNP	G	G	C	rs1864492	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
THNSL2	55258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88485425	88485425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KIAA1715	80856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176856974	176856974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
C20orf194	25943	broad.mit.edu	37	20	3268420	3268420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ADAM33	80332	hgsc.bcm.edu	37	20	3654433	3654433	+	Silent	SNP	C	C	T	rs2271511	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623179	29623179	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29633816	29633816	+	RNA	SNP	G	G	A	rs4066205		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43943206	43943206	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KCNQ2	3785	broad.mit.edu	37	20	62038077	62038077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057625	46057625	+	Silent	SNP	T	T	C	rs55677560	bycluster	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SEPT5	5413	hgsc.bcm.edu	37	22	19706333	19706333	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
XBP1	7494	hgsc.bcm.edu	37	22	29196469	29196469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CYP2D7P1	1564	bcgsc.ca	37	22	42538897	42538897	+	RNA	SNP	A	A	G	rs2854740	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MST1	4485	broad.mit.edu	37	3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	rs199969873		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
DZIP3	9666	broad.mit.edu;bcgsc.ca	37	3	108363212	108363212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KIAA2018	205717	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113377864	113377864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ADCY5	111	hgsc.bcm.edu	37	3	123167249	123167249	+	Silent	SNP	G	G	A	rs4678027		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MME	4311	broad.mit.edu	37	3	154884759	154884759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	173322702	173322702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu;ucsc.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TACC3	10460	broad.mit.edu	37	4	1730380	1730380	+	Silent	SNP	G	G	T	rs189023732	alternate_allele	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KIAA1239	57495	broad.mit.edu	37	4	37435529	37435529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
NFXL1	152518	bcgsc.ca	37	4	47887536	47887536	+	Silent	SNP	T	T	C	rs2053404	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
UGT2B11	10720	ucsc.edu	37	4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	rs200919649		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SLC22A5	6584	broad.mit.edu	37	5	131705923	131705923	+	Missense_Mutation	SNP	G	G	C	rs199942468		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SLC22A5	6584	broad.mit.edu	37	5	131705926	131705926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZNF204P	7754	ucsc.edu	37	6	27326863	27326863	+	RNA	SNP	G	G	A	rs2235232	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161015130	161015130	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TNRC18	84629	broad.mit.edu	37	7	5417170	5417170	+	Missense_Mutation	SNP	G	G	A	rs200992316		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu	37	7	11441492	11441492	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
HOXA10	3206	hgsc.bcm.edu	37	7	27213228	27213228	+	Missense_Mutation	SNP	G	G	A	rs201915532		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KCP	375616	hgsc.bcm.edu	37	7	128550681	128550681	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
UBN2	254048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138958801	138958801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KLRG2	346689	hgsc.bcm.edu	37	7	139168063	139168063	+	Missense_Mutation	SNP	G	G	A	rs12707447		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
GPR20	2843	ucsc.edu	37	8	142367335	142367335	+	Missense_Mutation	SNP	T	T	C	rs10875472	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ARHGEF39	84904	broad.mit.edu	37	9	35665121	35665121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
KIF27	55582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86504155	86504155	+	Missense_Mutation	SNP	G	G	A	rs150984973		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
LOC100499484-C9ORF174	0	bcgsc.ca	37	9	100070244	100070244	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TRIM14	9830	hgsc.bcm.edu	37	9	100849946	100849946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069809	141069809	+	RNA	DEL	T	T	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070064	141070064	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
RNR1	6052	bcgsc.ca	37	MT	684	684	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
CDX4	1046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	72674420	72674420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
PCGF6	84108	hgsc.bcm.edu	37	10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC	rs113359610		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
C17orf64	124773	broad.mit.edu	37	17	58499989	58499990	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
LOC100128675	0	broad.mit.edu	37	19	35571470	35571471	+	RNA	INS	-	-	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
AGPAT2	10555	broad.mit.edu	37	9	139581758	139581759	+	In_Frame_Ins	INS	-	-	CAG	rs201504151		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	0	0	0	0	0
