Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MTHFR	4524	bcgsc.ca	37	1	11863057	11863057	+	Silent	SNP	G	G	A	rs2066470	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CELA2B	51032	bcgsc.ca	37	1	15808767	15808767	+	Missense_Mutation	SNP	G	G	A	rs3820071	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
HSPG2	3339	bcgsc.ca	37	1	22165987	22165987	+	Missense_Mutation	SNP	G	G	A	rs2291827	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	4	4	0	0	0
AP4B1	10717	bcgsc.ca	37	1	114438951	114438951	+	Missense_Mutation	SNP	A	A	G	rs1217401	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	4	4	0	0	0
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145560086	145560086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ATP1A4	480	bcgsc.ca	37	1	160134056	160134056	+	Missense_Mutation	SNP	G	G	A	rs17368402	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TOR1AIP1	26092	bcgsc.ca	37	1	179877780	179877780	+	Missense_Mutation	SNP	A	A	C	rs17279712	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	3	3	0	0	0
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193119482	193119482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	2	0	2	0	0
CFHR1	3078	bcgsc.ca	37	1	196801042	196801042	+	Silent	SNP	G	G	T	rs4230	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	6	6	0	0	0
CFHR1	3078	bcgsc.ca	37	1	196801078	196801078	+	Silent	SNP	A	A	T	rs61743621	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	26	26	0	0	0
AVPR1B	553	broad.mit.edu	37	1	206224853	206224853	+	Missense_Mutation	SNP	A	A	C	rs148831426	alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
HLX	3142	hgsc.bcm.edu	37	1	221057963	221057963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	15	11	4	0	0
DNAH14	127602	bcgsc.ca	37	1	225534219	225534219	+	Missense_Mutation	SNP	T	T	C	rs7527925	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
RPS7P5	645884	bcgsc.ca	37	1	240176294	240176294	+	RNA	SNP	C	C	A	rs61830784	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
PROSER2	254427	hgsc.bcm.edu	37	10	11912332	11912332	+	Missense_Mutation	SNP	C	C	T	rs12253554		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
NFKB2	4791	broad.mit.edu	37	10	104160223	104160223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	59	53	6	0	0
GPAM	57678	bcgsc.ca	37	10	113920465	113920465	+	Silent	SNP	G	G	A	rs2277207	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	1	0	0	0
JAKMIP3	282973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	133951636	133951636	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
MUC6	4588	bcgsc.ca	37	11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
RAPSN	5913	ucsc.edu	37	11	47469439	47469439	+	Silent	SNP	A	A	G	rs7111873	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CCDC88B	283234	hgsc.bcm.edu	37	11	64112394	64112394	+	Missense_Mutation	SNP	G	G	A	rs143386417		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73829294	73829294	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73829313	73829313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
PDZRN4	29951	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41966628	41966628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
RACGAP1	29127	broad.mit.edu	37	12	50400412	50400412	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
HOXC11	3227	hgsc.bcm.edu	37	12	54367597	54367597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
GLIPR1	11010	broad.mit.edu	37	12	75892747	75892747	+	Missense_Mutation	SNP	C	C	G	rs200527675	alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	29	29	0	0	0
PARP4	143	ucsc.edu;bcgsc.ca	37	13	25016762	25016762	+	Missense_Mutation	SNP	G	G	A	rs113301501	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	4	4	0	0	0
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42874405	42874405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CYSLTR2	57105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	49281360	49281360	+	Missense_Mutation	SNP	G	G	A	rs201503697		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
KLHL28	54813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45403706	45403706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	1	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45639809	45639809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
FBXO34	55030	bcgsc.ca	37	14	55818706	55818706	+	Missense_Mutation	SNP	T	T	C	rs3742569	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	1	0	0	0
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96800204	96800204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
MIR323B	574410	bcgsc.ca	37	14	101522556	101522556	+	RNA	SNP	T	T	C	rs56103835	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
EIF2AK4	440275	bcgsc.ca	37	15	40259848	40259848	+	Missense_Mutation	SNP	A	A	C	rs2291627	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ZNF205	7755	hgsc.bcm.edu;broad.mit.edu	37	16	3169885	3169896	+	In_Frame_Del	DEL	CACCCACCAGGG	CACCCACCAGGG	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	CACCCACCAGGG	CACCCACCAGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19492710	19492710	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CDH5	1003	bcgsc.ca	37	16	66432424	66432424	+	Silent	SNP	C	C	T	rs3826229	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ALOX15	246	bcgsc.ca	37	17	4536241	4536241	+	Silent	SNP	T	T	C	rs743646	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CCDC144C	348254	bcgsc.ca	37	17	20254226	20254226	+	RNA	SNP	G	G	A	rs2543805		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904837	21904837	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254133	39254133	+	Missense_Mutation	SNP	G	G	T	rs200462175		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
KRTAP4-11	653240	bcgsc.ca	37	17	39274311	39274311	+	Missense_Mutation	SNP	T	T	C	rs425755		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274319	39274319	+	Missense_Mutation	SNP	G	G	C	rs199712484		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
KRTAP4-6	81871	broad.mit.edu	37	17	39296412	39296412	+	Missense_Mutation	SNP	T	T	A	rs200470462		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
KRTAP4-5	85289	ucsc.edu;bcgsc.ca	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ICT1	3396	hgsc.bcm.edu	37	17	73008804	73008804	+	Missense_Mutation	SNP	G	G	T	rs3744206	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	14	1	13	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096344	79096344	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TSHZ1	10194	bcgsc.ca	37	18	72998268	72998268	+	Silent	SNP	T	T	C	rs3744909	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9003645	9003645	+	Missense_Mutation	SNP	G	G	A	rs11085777	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
NDUFB7	4713	bcgsc.ca	37	19	14677691	14677691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	775	775	0	0	0
OR10H3	26532	bcgsc.ca	37	19	15852363	15852363	+	Missense_Mutation	SNP	G	G	A	rs11670007	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ACTN4	81	ucsc.edu;bcgsc.ca	37	19	39214253	39214253	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	15	0	15	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CYP2A7	1549	bcgsc.ca	37	19	41386527	41386527	+	Missense_Mutation	SNP	G	G	A	rs58798281	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42603760	42603760	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
IRGQ	126298	hgsc.bcm.edu	37	19	44098975	44098975	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ZNF226	7769	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44680489	44680489	+	Silent	SNP	G	G	C	rs2178342	byfrequency;alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	9	6	3	0	0
ZNF814	730051	ucsc.edu	37	19	58384418	58384418	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	26	21	5	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	12	10	2	0	0
NRXN1	9378	hgsc.bcm.edu	37	2	51255090	51255090	+	Missense_Mutation	SNP	G	G	A	rs199784029		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TEKT4	150483	hgsc.bcm.edu	37	2	95539831	95539831	+	Missense_Mutation	SNP	T	T	C	rs199573327		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
IL1RL1	9173	bcgsc.ca	37	2	102968007	102968007	+	Missense_Mutation	SNP	G	G	A	rs4988956	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TUBA3E	112714	broad.mit.edu	37	2	130951625	130951625	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
LOC150776	0	broad.mit.edu	37	2	132258593	132258593	+	RNA	SNP	A	A	G	rs76033185	bycluster;byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	4	4	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014678	133014678	+	RNA	SNP	A	A	G	rs72869462	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014703	133014703	+	RNA	SNP	T	T	C	rs72869464	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179558366	179558366	+	Missense_Mutation	SNP	T	T	C	rs2042995	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
LOC100507443	0	bcgsc.ca	37	2	209010891	209010891	+	RNA	SNP	G	G	A	rs2289917	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
SH3BP4	23677	bcgsc.ca	37	2	235951819	235951819	+	Silent	SNP	A	A	G	rs3795962	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	2	2	0	0	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	1	0	0	0
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43727858	43727858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58441568	58441568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	1	0	0	0
BAGE2	85319	bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
LOC339622	0	broad.mit.edu	37	21	26397102	26397102	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
COL6A1	1291	broad.mit.edu	37	21	47401845	47401850	+	In_Frame_Del	DEL	GGCCGT	GGCCGT	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TFIP11	24144	bcgsc.ca	37	22	26888060	26888060	+	Silent	SNP	G	G	A	rs17850763	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	18	18	0	0	0
TRANK1	9881	broad.mit.edu	37	3	36874077	36874077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TGM4	7047	bcgsc.ca	37	3	44926931	44926931	+	Missense_Mutation	SNP	G	G	A	rs115097986		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
FYCO1	79443	bcgsc.ca	37	3	46008087	46008087	+	Silent	SNP	G	G	A	rs13079869	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
BOC	91653	bcgsc.ca	37	3	112991312	112991312	+	Silent	SNP	C	C	T	rs3814398	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160148837	160148837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	19	17	2	0	0
ZFYVE28	57732	bcgsc.ca	37	4	2275835	2275835	+	Silent	SNP	G	G	A	rs2051561	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	14	14	0	0	0
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3388163	3388163	+	Silent	SNP	C	C	T	rs147432997	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42466787	42466787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	1	0	0	0
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	89589214	89589214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	2	2	0	0	0
TLL1	7092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	166981201	166981201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173961210	173961210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183609360	183609360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TENM3	55714	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183710523	183710523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
WWC2	80014	bcgsc.ca	37	4	184236868	184236868	+	Missense_Mutation	SNP	G	G	A	rs4862155	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	1	0	0	0
SDHAP3	728609	broad.mit.edu	37	5	1593266	1593266	+	RNA	SNP	T	T	C	rs6898538	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	100	3	97	0	0
ANKH	56172	bcgsc.ca	37	5	14769103	14769103	+	Silent	SNP	G	G	A	rs17251667	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
SNX18	112574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	53839018	53839018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
FAM172A	83989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93111872	93111872	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
KCTD16	57528	broad.mit.edu	37	5	143853531	143853531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ANXA6	309	broad.mit.edu;bcgsc.ca	37	5	150503872	150503872	+	Silent	SNP	C	C	T	rs138779149	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	124	124	0	0	0
FAT2	2196	bcgsc.ca	37	5	150908812	150908812	+	Missense_Mutation	SNP	C	C	T	rs7718054	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	2	0	2	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
BTN3A1	11119	broad.mit.edu;bcgsc.ca	37	6	26408132	26408132	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	3	3	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29910622	29910622	+	Silent	SNP	C	C	T	rs199501996	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1111	1111	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29910688	29910688	+	Missense_Mutation	SNP	A	A	G	rs41544012	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	350	349	1	0	0
HLA-A	3105	bcgsc.ca	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	A	G	rs41559716	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	347	347	0	0	0
IP6K3	117283	bcgsc.ca	37	6	33703230	33703230	+	Silent	SNP	G	G	A	rs545787	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TULP1	7287	bcgsc.ca	37	6	35477025	35477025	+	Missense_Mutation	SNP	C	C	G	rs2064318	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	2	2	0	0	0
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	75968594	75968594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	3	3	0	0	0
LAMA2	3908	broad.mit.edu	37	6	129691085	129691085	+	Nonsense_Mutation	SNP	G	G	T	rs138303386	byfrequency;alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
IGF2R	3482	ucsc.edu	37	6	160454109	160454109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TCP10L2	401285	broad.mit.edu	37	6	167592576	167592576	+	Silent	SNP	G	G	A	rs60976240	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TBP	6908	mdanderson.org	37	6	170871043	170871043	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	441	436	5	0	0
MRPL32	64983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	42971992	42971992	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	23	17	6	0	0
AZGP1	563	broad.mit.edu;bcgsc.ca	37	7	99564732	99564732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122056123	122056123	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123105042	123105042	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
PRSS2	5645	broad.mit.edu;bcgsc.ca	37	7	142480012	142480012	+	RNA	SNP	C	C	T	rs56146961	bycluster;byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
PRSS2	5645	broad.mit.edu	37	7	142480034	142480034	+	RNA	SNP	C	C	A	rs10808019		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
OR6B1	135946	bcgsc.ca	37	7	143701516	143701516	+	Missense_Mutation	SNP	C	C	T	rs7787378	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CTAGE4	100128553	broad.mit.edu	37	7	143882673	143882673	+	Missense_Mutation	SNP	C	C	T	rs62484795		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	0	1	0	0
PDIA4	9601	hgsc.bcm.edu	37	7	148725417	148725417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
COL14A1	7373	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121290694	121290694	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
LOC100132352	0	bcgsc.ca	37	9	68729117	68729117	+	RNA	SNP	A	A	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
NTRK2	4915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87570307	87570307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
SVEP1	79987	bcgsc.ca	37	9	113261483	113261483	+	Missense_Mutation	SNP	C	C	T	rs872665	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
GPR144	347088	broad.mit.edu	37	9	127230891	127230891	+	Missense_Mutation	SNP	G	G	A	rs10760365	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
GPR144	347088	broad.mit.edu;bcgsc.ca	37	9	127231774	127231774	+	Missense_Mutation	SNP	C	C	G	rs1570580	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069468	141069468	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30873289	30873289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31792220	31792220	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CCDC22	28952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49099775	49099775	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	20	12	8	0	0
MTMR8	55613	bcgsc.ca	37	X	63488902	63488902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TRMT2B	79979	broad.mit.edu	37	X	100297093	100297093	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	1	1	0	0	0
KRTAP4-3	85290	bcgsc.ca	37	17	39324229	39324230	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
TEKT4	150483	broad.mit.edu	37	2	95539829	95539830	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
SOAT2	8435	hgsc.bcm.edu	37	12	53509339	53509340	+	Silent	DNP	GC	GC	TT	rs34924760		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	0	0	0	0	0
