Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9118302	9118302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PTCHD2	57540	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11574461	11574461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FAM131C	348487	ucsc.edu	37	1	16385007	16385007	+	Silent	SNP	C	C	T	rs28667975		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	35	35	0	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19455563	19455563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
RNF19B	127544	bcgsc.ca	37	1	33407925	33407925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	3	3	0	0	0
PRDX1	5052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45980288	45980290	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PDE4B	5142	ucsc.edu;bcgsc.ca	37	1	66384376	66384376	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
IFI44L	10964	ucsc.edu	37	1	79095482	79095482	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
GBP4	115361	ucsc.edu	37	1	89658754	89658754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	107691233	107691233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150532560	150532560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	2	2	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158632609	158632609	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DUSP12	11266	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161722196	161722196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	20	13	7	0	0
PTPN7	5778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202122941	202122941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210857405	210857405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215821063	215821063	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
TRIM11	81559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228582932	228582932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	30	20	10	0	0
CCDC3	83643	bcgsc.ca	37	10	12940564	12940564	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
HSPA14	51182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	14909858	14909859	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
OLAH	55301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15103749	15103749	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49440201	49440201	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FLJ31813	0	broad.mit.edu	37	10	51814218	51814218	+	RNA	DEL	T	T	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61835910	61835910	+	Missense_Mutation	SNP	T	T	A	rs201650334	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CYP26C1	340665	broad.mit.edu	37	10	94828150	94828150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
C11orf35	256329	hgsc.bcm.edu	37	11	560710	560710	+	Missense_Mutation	SNP	A	A	G	rs200922487		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DCDC1	341019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	31349747	31349747	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
WT1-AS	51352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32461206	32461206	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371204	55371204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CD248	57124	broad.mit.edu;bcgsc.ca	37	11	66084195	66084195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73441848	73441848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	9	4	5	0	0
TAF1D	79101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93471576	93471576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	45	23	22	0	0
MRE11A	4361	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94201026	94201026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	11	10	1	0	0
VWF	7450	broad.mit.edu;bcgsc.ca	37	12	6128740	6128740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	8	8	0	0	0
C12orf57	113246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7053766	7053766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	193	171	22	0	0
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18491453	18491453	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SLCO1C1	53919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20864373	20864373	+	Missense_Mutation	SNP	C	C	T	rs181627657		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	749	505	244	0	0
ATF1	466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51207830	51207830	+	Silent	SNP	T	T	C	rs186674535	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	32	25	7	0	0
OR6C2	341416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55846356	55846356	+	Missense_Mutation	SNP	G	G	A	rs187562104		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
NABP2	79035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56622965	56622965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	38	29	9	0	0
AVPR1A	552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63544072	63544072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LLPH	84298	broad.mit.edu	37	12	66517671	66517671	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	273	258	15	0	0
HCFC2	29915	hgsc.bcm.edu;bcgsc.ca	37	12	104459979	104459990	+	In_Frame_Del	DEL	AGATATCCCTCC	AGATATCCCTCC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	AGATATCCCTCC	AGATATCCCTCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FAM222A	84915	hgsc.bcm.edu	37	12	110206245	110206245	+	Missense_Mutation	SNP	G	G	A	rs201640109		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	16	8	8	0	0
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114529971	114529971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
EFS	10278	bcgsc.ca	37	14	23834217	23834217	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PCK2	5106	ucsc.edu	37	14	24568382	24568382	+	Silent	SNP	C	C	T	rs200826292		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	24	24	0	0	0
NPAS3	64067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	33684463	33684463	+	Silent	SNP	T	T	C	rs138614075		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ARID4A	5926	broad.mit.edu	37	14	58831394	58831394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	3	3	0	0	0
PAPLN	89932	broad.mit.edu	37	14	73712814	73712814	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ABCD4	5826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74763089	74763089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	4	3	1	0	0
TMEM63C	57156	broad.mit.edu	37	14	77685876	77685876	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
LOC727924	0	bcgsc.ca	37	15	22332880	22332880	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
UNC13C	440279	broad.mit.edu	37	15	54586242	54586242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
RORA	6095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	60797800	60797800	+	Silent	SNP	C	C	T	rs199818399		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	18	12	6	0	0
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65703500	65703500	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ARIH1	25820	broad.mit.edu	37	15	72873082	72873082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LOC645752	0	broad.mit.edu	37	15	78215590	78215590	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LOC283692	0	bcgsc.ca	37	15	83357862	83357862	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85438269	85438269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
MSLN	10232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	818658	818658	+	Silent	SNP	G	G	A	rs201197109		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SPNS1	83985	broad.mit.edu	37	16	28992830	28992830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	86	85	1	0	0
ANKRD26P1	124149	bcgsc.ca	37	16	46597870	46597870	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LONP2	83752	ucsc.edu	37	16	48295433	48295433	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	20	14	6	0	0
SALL1	6299	broad.mit.edu	37	16	51171231	51171231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
EDC4	23644	broad.mit.edu	37	16	67917881	67917881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	213	202	10	0	1
NTN1	9423	broad.mit.edu;bcgsc.ca	37	17	9143050	9143050	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18062646	18062646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904646	21904646	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21906398	21906398	+	RNA	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LRRC37B	114659	broad.mit.edu	37	17	30348897	30348897	+	Silent	SNP	C	C	T	rs200519924		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
LASP1	3927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37070576	37070576	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ARL4D	379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41477602	41477602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	3	2	1	0	0
HEXIM2	124790	broad.mit.edu;bcgsc.ca	37	17	43247039	43247039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	12	11	1	0	0
LRRC37A4P	55073	broad.mit.edu	37	17	43592088	43592089	+	RNA	DEL	GT	GT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KANSL1	284058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44249233	44249233	+	Missense_Mutation	SNP	T	T	C	rs149661150		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	7	6	1	0	0
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74004100	74004100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ST6GALNAC1	55808	ucsc.edu;bcgsc.ca	37	17	74625598	74625598	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	0	1	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625786	74625786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
B3GNTL1	146712	hgsc.bcm.edu	37	17	80915250	80915257	+	Frame_Shift_Del	DEL	GGCAGTCA	GGCAGTCA	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	GGCAGTCA	GGCAGTCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	18	18	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	26	13	13	0	0
EVI5L	115704	broad.mit.edu	37	19	7911501	7911501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	6	6	0	0	0
CD320	51293	hgsc.bcm.edu	37	19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	rs2232775	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	44	29	15	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PRAM1	84106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8555234	8555236	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CAT	CAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13246265	13246265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	14	9	5	0	0
JAK3	3718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17954268	17954268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
NUMBL	9253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41175846	41175846	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	6	6	0	0	0
LOC284344	0	bcgsc.ca	37	19	43719360	43719360	+	RNA	SNP	C	C	T	rs199857986		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43772123	43772123	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	15	6	9	0	0
PNMAL2	57469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46997223	46997223	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	7	5	2	0	0
TMEM143	55260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48866617	48866617	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	7	4	3	0	0
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50865552	50865552	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	rs61751957		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ZNF616	90317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52620097	52620098	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LILRA3	11026	ucsc.edu	37	19	54803750	54803750	+	Missense_Mutation	SNP	G	G	T	rs149807835	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	2	2	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
RAD51AP2	729475	broad.mit.edu;bcgsc.ca	37	2	17699028	17699028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24522788	24522788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
OTOF	9381	hgsc.bcm.edu;bcgsc.ca	37	2	26684681	26684683	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
OTOF	9381	broad.mit.edu	37	2	26696027	26696027	+	Missense_Mutation	SNP	G	G	C	rs199904558		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36739479	36739479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FLJ30838	0	bcgsc.ca	37	2	59093362	59093362	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CCDC142	84865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74701812	74701812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	8	7	1	0	0
SLC35F5	80255	broad.mit.edu	37	2	114512866	114512869	+	Frame_Shift_Del	DEL	ACAC	ACAC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118575133	118575133	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	4	4	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125285031	125285031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	144245049	144245049	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
FMNL2	114793	hgsc.bcm.edu;bcgsc.ca	37	2	153476031	153476031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KCNH7	90134	broad.mit.edu;bcgsc.ca	37	2	163241222	163241222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CCDC141	285025	broad.mit.edu	37	2	179721022	179721022	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CASP8	841	broad.mit.edu	37	2	202137439	202137440	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CYP20A1	57404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204143326	204143326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	19	13	6	0	0
VWC2L	402117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215279234	215279234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ZNF142	7701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219508012	219508012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219896232	219896232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230656613	230656613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	14	9	5	0	0
NMUR1	10316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	232393591	232393591	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DIS3L2	129563	broad.mit.edu	37	2	233194545	233194545	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	28	28	0	0	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3214626	3214626	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PCSK2	5126	broad.mit.edu	37	20	17341187	17341187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43057001	43057001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
KCNS1	3787	bcgsc.ca	37	20	43727108	43727108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SLMO2	51012	broad.mit.edu	37	20	57613555	57613555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	23	23	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	211	168	43	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	146	146	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	140	140	0	0	0
DSCR9	257203	bcgsc.ca	37	21	38592579	38592579	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DSCAM	1826	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41539177	41539177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SLC25A18	83733	broad.mit.edu	37	22	18070006	18070006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DGCR5	26220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18978210	18978210	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	0	1	0	0
KIAA1656	0	bcgsc.ca	37	22	30769901	30769901	+	RNA	SNP	G	G	C	rs4820838		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KIAA1656	0	bcgsc.ca	37	22	30769906	30769906	+	RNA	SNP	T	T	C	rs4820839	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PRRT3	285368	bcgsc.ca	37	3	9990800	9990800	+	Missense_Mutation	SNP	G	G	C	rs59465469	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	4	1	3	0	0
FANCD2	2177	bcgsc.ca	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	3	3	0	0	0
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37396592	37396592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	70	51	19	0	0
COL7A1	1294	broad.mit.edu	37	3	48621170	48621170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	113697118	113697120	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
OSBPL11	114885	broad.mit.edu;bcgsc.ca	37	3	125257453	125257453	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	4	3	1	0	0
PLXND1	23129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129290586	129290586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	24	21	3	0	0
TMCC1	23023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129370603	129370603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	23	17	5	0	1
RYK	6259	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133896850	133896850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	23	17	6	0	0
COPB2	9276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139077931	139077931	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	230	177	52	0	1
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141162487	141162487	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CCNL1	57018	hgsc.bcm.edu;bcgsc.ca	37	3	156868131	156868134	+	Frame_Shift_Del	DEL	AACA	AACA	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	AACA	AACA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CCDC39	339829	ucsc.edu	37	3	180337128	180337128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
MCCC1	56922	mdanderson.org	37	3	182733294	182733294	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	32	29	3	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959508	183959508	+	Silent	SNP	A	A	C	rs28606531	byfrequency;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	4	2	2	0	0
IGF2BP2	10644	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185407396	185407396	+	Missense_Mutation	SNP	C	C	G	rs148304949	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	17	14	3	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36130245	36130245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KIAA1211	57482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57180955	57180955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62936396	62936396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	8	6	2	0	0
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71510144	71510144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
WDFY3	23001	broad.mit.edu	37	4	85623617	85623617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	3	3	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537435	88537435	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537441	88537441	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537456	88537456	+	Silent	SNP	C	C	T	rs111240022	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
NDST4	64579	ucsc.edu	37	4	115769495	115769495	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125592202	125592202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11082866	11082866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
GUSBP1	728411	broad.mit.edu	37	5	21484763	21484763	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DROSHA	29102	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31526222	31526222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43161463	43161463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	3	3	0	0	0
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50680462	50680462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	43	27	16	0	0
ANKRD34B	340120	ucsc.edu	37	5	79854554	79854554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215777	140215777	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140389355	140389355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ADRA1B	147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159344848	159344848	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169097591	169097591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FLT4	2324	broad.mit.edu	37	5	180048764	180048764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4037635	4037635	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
HIST1H3E	8353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26225400	26225400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
EHMT2	10919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31854777	31854777	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DAAM2	23500	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39867948	39867948	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	12	6	6	0	0
CUL7	9820	broad.mit.edu	37	6	43020160	43020160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	5	5	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51774212	51774212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56336987	56336987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	20	16	4	0	0
GUSBP4	375513	bcgsc.ca	37	6	58285352	58285352	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
GUSBP4	375513	bcgsc.ca	37	6	58285357	58285357	+	RNA	DEL	T	T	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SYNCRIP	10492	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	86324650	86324650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	53	30	23	0	0
GABRR2	2570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	89978901	89978901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
RNF217	154214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	125404012	125404012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	136582461	136582461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	40	40	0	0	0
MTHFD1L	25902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151281517	151281517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	4	3	1	0	0
SCAF8	22828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	155126521	155126522	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	11	11	0	0	0
TBP	6908	mdanderson.org	37	6	170871043	170871043	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	73	61	12	0	0
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11485690	11485690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
BZW2	28969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16734601	16734601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	99	75	24	0	0
SP8	221833	hgsc.bcm.edu;mdanderson.org	37	7	20824953	20824953	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21469550	21469550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23163401	23163401	+	Silent	SNP	G	G	A	rs150640353		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	0	1	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47897371	47897371	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48327569	48327569	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
GRB10	2887	bcgsc.ca	37	7	50682537	50682537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CROT	54677	ucsc.edu	37	7	86988623	86988623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	8	8	0	0	0
AKAP9	10142	broad.mit.edu	37	7	91667778	91667778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121769438	121769438	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	rs79377053		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	6	3	3	0	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2857496	2857496	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ANGPT2	285	broad.mit.edu	37	8	6378801	6378801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	3	3	0	0	0
FAM86B3P	286042	bcgsc.ca	37	8	8098079	8098079	+	RNA	SNP	A	A	G	rs2955587	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
GOT1L1	137362	broad.mit.edu	37	8	37794838	37794838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
LSM1	27257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38021296	38021298	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SLCO5A1	81796	ucsc.edu	37	8	70617290	70617290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ANGPT1	284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	108334173	108334173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113323220	113323220	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SQLE	6713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126019726	126019726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	3	0	3	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	4	0	4	0	0
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144998369	144998369	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	4	4	0	0	0
MROH1	727957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145247210	145247210	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	2	0	2	0	0
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34627865	34627865	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
C9orf131	138724	broad.mit.edu	37	9	35045280	35045280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74347358	74347358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	8	8	0	0	0
C9orf57	138240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	74674243	74674243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86518378	86518378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PTPDC1	138639	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96859984	96859984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117169063	117169063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	10	8	2	0	0
TNC	3371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117792645	117792645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	1	1	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	2	0	2	0	0
GLE1	2733	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131271255	131271255	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	9	8	0	1	0
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131271329	131271329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	7	7	0	0	0
SAT1	6303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	23803871	23803873	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PCYT1B	9468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24593415	24593415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	26212978	26212978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41587121	41587121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DGKK	139189	broad.mit.edu	37	X	50213274	50213274	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53410124	53410124	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	7	6	1	0	0
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53591626	53591626	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
SATL1	340562	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84362926	84362926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DACH2	117154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85950071	85950071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	107979446	107979446	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
CRTC3	64784	broad.mit.edu	37	15	91189386	91189387	+	RNA	INS	-	-	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
PAQR4	124222	broad.mit.edu	37	16	3019781	3019782	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
FLJ45079	0	hgsc.bcm.edu;bcgsc.ca	37	17	75879202	75879203	+	RNA	INS	-	-	CCCA	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
ME2	4200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	48434497	48434498	+	Frame_Shift_Ins	INS	-	-	AGAG	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
DCAF15	90379	broad.mit.edu	37	19	14071333	14071334	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241715297	241715298	+	Frame_Shift_Ins	INS	-	-	CGGAATCT	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	183035998	183035999	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	0	0	0	0	0
