Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
PINK1	65018	hgsc.bcm.edu	37	1	20960230	20960230	+	Silent	SNP	C	C	T	rs45530340	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	0	2	0	0
C1QC	714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22973845	22973845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	42	41	0	1	0
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34099087	34099087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KIF2C	11004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45227628	45227628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	8	2	6	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47611785	47611785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
HMGCS2	3158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120295286	120295286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	7	0	7	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233578	153233578	+	Silent	SNP	C	C	T	rs1143389	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu	37	1	154842252	154842252	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
HCN3	57657	broad.mit.edu	37	1	155257913	155257913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	4	4	0	0	0
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156303393	156303393	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	433	338	94	0	1
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161954657	161954657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	3	0	0	0
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169672445	169672445	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179983496	179983496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	4	3	1	0	0
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186646810	186646810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	198711467	198711467	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
TRAF3IP3	80342	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209948701	209948701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DTL	51514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212245552	212245552	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
EPRS	2058	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220219731	220219731	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	14	9	5	0	0
ITPKB	3707	broad.mit.edu	37	1	226924876	226924884	+	In_Frame_Del	DEL	CTGCCGCTG	CTGCCGCTG	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
OR2T33	391195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248437020	248437020	+	Missense_Mutation	SNP	C	C	T	rs138653777		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6533734	6533734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ECHDC3	79746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	11805518	11805518	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LYZL1	84569	ucsc.edu;bcgsc.ca	37	10	29581490	29581490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
GPRIN2	9721	ucsc.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs9422022	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50714007	50714007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
PGBD3	267004	broad.mit.edu;bcgsc.ca	37	10	50723715	50723715	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	2	0	0	0
DNAJC9-AS1	414245	ucsc.edu;bcgsc.ca	37	10	75008057	75008057	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	11	1	10	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
NDUFB8	4714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	102289594	102289594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	271	109	161	1	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	0	2	0	0
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	128193343	128193343	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
C11orf35	256329	hgsc.bcm.edu	37	11	556063	556063	+	Missense_Mutation	SNP	C	C	T	rs144614541		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	0	3	0	0
IRF7	3665	hgsc.bcm.edu	37	11	615103	615103	+	Silent	SNP	G	G	A	rs113083699		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093295	1093295	+	Missense_Mutation	SNP	C	C	T	rs200145328	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1272245	1272245	+	Missense_Mutation	SNP	C	C	T	rs2943511	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651158	1651169	+	In_Frame_Del	DEL	GGCTGTGGCTCT	GGCTGTGGCTCT	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3250000	3250000	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4967624	4967624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12315183	12315183	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KCNK7	10089	broad.mit.edu;bcgsc.ca	37	11	65360508	65360508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
INPPL1	3636	broad.mit.edu	37	11	71949087	71949087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FAM181B	220382	hgsc.bcm.edu	37	11	82443696	82443696	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SYTL2	54843	broad.mit.edu	37	11	85435193	85435193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	7	7	0	0	0
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113103921	113103921	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	27	9	18	0	0
BACE1	23621	hgsc.bcm.edu	37	11	117186506	117186506	+	Silent	SNP	G	G	A	rs28917234	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	8	0	8	0	0
BLID	414899	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121986666	121986666	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2910398	2910398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	298	116	182	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53555170	53555170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NFE2	4778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54686192	54686192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56522161	56522161	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	51	43	8	0	0
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57005765	57005765	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	114	49	65	0	0
SLC16A7	9194	broad.mit.edu;bcgsc.ca	37	12	60165060	60165060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	2	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
HECTD4	283450	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112600907	112600907	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	7	5	2	0	0
LINC00173	100287569	ucsc.edu;bcgsc.ca	37	12	116972579	116972579	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
FBRSL1	57666	broad.mit.edu;bcgsc.ca	37	12	133158326	133158326	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26138139	26138139	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36410236	36410236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MYO16	23026	hgsc.bcm.edu	37	13	109792825	109792825	+	Missense_Mutation	SNP	C	C	T	rs199777754		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	5	0	5	0	0
DDHD1	80821	hgsc.bcm.edu	37	14	53619681	53619681	+	Missense_Mutation	SNP	C	C	T	rs61985140		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69704629	69704629	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	2	4	0	0
ADAM21	8747	ucsc.edu	37	14	70924602	70924602	+	Missense_Mutation	SNP	T	T	G	rs72735759	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ADAM21	8747	ucsc.edu;bcgsc.ca	37	14	70924643	70924643	+	Missense_Mutation	SNP	T	T	C	rs78114303	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ISM2	145501	hgsc.bcm.edu	37	14	77965094	77965094	+	Silent	SNP	G	G	A	rs12431905	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
BCL11B	64919	hgsc.bcm.edu	37	14	99641147	99641147	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CYP46A1	10858	bcgsc.ca	37	14	100157470	100157470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
YY1	7528	hgsc.bcm.edu	37	14	100705788	100705790	+	In_Frame_Del	DEL	CCA	CCA	-	rs76675246	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	CCA	CCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101348688	101348688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101349080	101349080	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
WHAMMP3	339005	broad.mit.edu;bcgsc.ca	37	15	23191502	23191502	+	RNA	SNP	C	C	T	rs7167486	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
HERC2P2	400322	broad.mit.edu	37	15	23299942	23299942	+	RNA	SNP	C	C	T	rs28719568		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	2	0	0	0
HERC2P2	400322	broad.mit.edu;ucsc.edu	37	15	23300033	23300033	+	RNA	SNP	T	T	C	rs1058831	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	0	3	0	0
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	34064256	34064256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SKOR1	390598	hgsc.bcm.edu	37	15	68120014	68120014	+	Silent	SNP	C	C	T	rs62015251		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89790933	89790933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90176983	90176983	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	2	1	0	0
ZNF710	374655	hgsc.bcm.edu	37	15	90610914	90610914	+	Missense_Mutation	SNP	T	T	G	rs201968429	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	5	1	0	0
C16orf11	146325	hgsc.bcm.edu	37	16	614727	614727	+	Missense_Mutation	SNP	G	G	A	rs200682205		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	0	6	0	0
SLC9A3R2	9351	hgsc.bcm.edu	37	16	2086500	2086500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4731691	4731691	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	45	17	28	0	0
PDILT	204474	broad.mit.edu	37	16	20410472	20410472	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
PRKCB	5579	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	23847557	23847557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24268165	24268165	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31288327	31288327	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ABCC11	85320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48201459	48201459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	76555137	76555137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2143	1256	882	2	3
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MYH8	4626	bcgsc.ca	37	17	10296486	10296486	+	Silent	SNP	G	G	A	rs33969260	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	0	2	0	0
IGFBP4	3487	hgsc.bcm.edu	37	17	38600092	38600092	+	Silent	SNP	G	G	A	rs598892	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240729	39240729	+	Missense_Mutation	SNP	A	A	G	rs200532954		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KRTAP4-6	81871	ucsc.edu	37	17	39296422	39296422	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40957779	40957779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
PTGES3L-AARSD1	100885850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41105767	41105767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	20	18	2	0	0
EPN3	55040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48614027	48614027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
EPN3	55040	bcgsc.ca	37	17	48619272	48619272	+	Silent	SNP	G	G	A	rs111678638	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
EPN3	55040	hgsc.bcm.edu	37	17	48619290	48619290	+	Silent	SNP	G	G	A	rs112657244	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
C17orf70	80233	broad.mit.edu;bcgsc.ca	37	17	79517591	79517591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	346782	346782	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SMAD7	4092	hgsc.bcm.edu	37	18	46476680	46476680	+	Missense_Mutation	SNP	C	C	T	rs144204026		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	5	2	3	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	0	2	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	1046951	1046951	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	3	3	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	77	38	39	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RFX2	5990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6047473	6047473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	1	0	0	0
RPS28	6234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8386554	8386554	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2034	1388	645	1	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZNF846	162993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9869036	9869036	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11594864	11594864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15508345	15508345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	4	3	1	0	0
OR10H5	284433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15905273	15905273	+	Missense_Mutation	SNP	C	C	T	rs145808850	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CHERP	10523	broad.mit.edu	37	19	16640581	16640583	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18943028	18943028	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	1	2	0	0
YJEFN3	374887	broad.mit.edu	37	19	19648155	19648155	+	Missense_Mutation	SNP	C	C	T	rs200289592		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	4	2	2	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189550	38189550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CAPN12	147968	hgsc.bcm.edu	37	19	39226927	39226927	+	Missense_Mutation	SNP	T	T	C	rs62120074		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
APOE	348	hgsc.bcm.edu	37	19	45412079	45412079	+	Missense_Mutation	SNP	C	C	T	rs7412	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3294	798	2494	1	1
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	24	0	24	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SAE1	10055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47673134	47673134	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	153	107	46	0	0
SLC8A2	6543	hgsc.bcm.edu	37	19	47951116	47951116	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51022585	51022585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
TMEM86B	255043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55739581	55739581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	16	13	3	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57065768	57065768	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	8	8	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MYT1L	23040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1946895	1946895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
RRM2	6241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10263878	10263878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	101	67	34	0	0
ASXL2	55252	broad.mit.edu	37	2	25965360	25965360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	1	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
USP39	10713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85872161	85872161	+	Silent	SNP	C	C	T	rs145807458		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	75	54	21	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RANBP2	5903	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109380404	109380404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	5	3	2	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130911319	130911319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	57	42	15	0	0
MZT2A	653784	bcgsc.ca	37	2	132241540	132241540	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MZT2A	653784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	132241688	132241688	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	668	653	14	0	1
NR4A2	4929	ucsc.edu;bcgsc.ca	37	2	157182673	157182673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
AHCTF1P1	285116	bcgsc.ca	37	2	162363784	162363784	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	5	5	0	0	0
SPC25	57405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169745769	169745769	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	18	13	5	0	0
DHRS9	10170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169939955	169939955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196740469	196740469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212589871	212589871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MRPL44	65080	bcgsc.ca	37	2	224831581	224831581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ITCH	83737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33080396	33080396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40713387	40713387	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	8	0	8	0	0
RTEL1-TNFRSF6B	100533107	bcgsc.ca	37	20	62290876	62290876	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ANKRD20A11P	391267	bcgsc.ca	37	21	15347570	15347570	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KRTAP11-1	337880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32253737	32253737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33371313	33371313	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KCNJ6	3763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	38997475	38997475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KRTAP10-9	386676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46047395	46047395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057634	46057634	+	Silent	SNP	T	T	C	rs61029972	bycluster;byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057640	46057640	+	Silent	SNP	C	C	T	rs78817801	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LZTR1	8216	broad.mit.edu	37	22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
BCR	613	hgsc.bcm.edu	37	22	23655084	23655084	+	Silent	SNP	C	C	T	rs75389254		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LOC284889	0	bcgsc.ca	37	22	24236580	24236580	+	RNA	SNP	G	G	C	rs34914548	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	19	13	6	0	0
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28192787	28192787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	2	0	0	0
OSBP2	23762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31137254	31137254	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	5	1	0	0
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45681905	45681905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CHKB-CPT1B	386593	bcgsc.ca	37	22	51015481	51015481	+	RNA	SNP	G	G	A	rs131759	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NGLY1	55768	bcgsc.ca	37	3	25777593	25777593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	19	19	0	0	0
VILL	50853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38043315	38043315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266132	41266155	+	In_Frame_Del	DEL	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FYCO1	79443	bcgsc.ca	37	3	46007825	46007825	+	Missense_Mutation	SNP	T	T	C	rs71622515	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	47139519	47139519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	11	10	1	0	0
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	73437153	73437153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	8	5	3	0	0
ZPLD1	131368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	102171934	102171934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
HEG1	57493	bcgsc.ca	37	3	124692689	124692689	+	Silent	SNP	C	C	T	rs2270778	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	6	0	0	0
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	165548281	165548281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	16	16	0	0	0
ZNF639	51193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179051848	179051848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	15	13	2	0	0
MAP3K13	9175	broad.mit.edu	37	3	185190907	185190907	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	6	0	0	0
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193174877	193174877	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511379	195511379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	9	8	1	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	76	6	70	0	0
MSX1	4487	hgsc.bcm.edu	37	4	4861745	4861745	+	Missense_Mutation	SNP	C	C	G	rs36059701		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	rs74929644		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
UGT2B28	54490	broad.mit.edu	37	4	70156400	70156400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537171	88537171	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537186	88537186	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537195	88537195	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537222	88537222	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	0	6	0	0
FGF2	2247	hgsc.bcm.edu	37	4	123748086	123748086	+	Silent	SNP	C	C	T	rs1449683	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FAT4	79633	broad.mit.edu;bcgsc.ca	37	4	126240715	126240715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126241103	126241103	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LRBA	987	bcgsc.ca	37	4	151793903	151793903	+	Missense_Mutation	SNP	T	T	C	rs72719663	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu	37	5	191992	191992	+	Silent	SNP	G	G	A	rs34710524	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZDHHC11	79844	bcgsc.ca	37	5	801252	801252	+	Missense_Mutation	SNP	C	C	T	rs142091140	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	3	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FLJ33360	0	broad.mit.edu	37	5	6312374	6312374	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
TRIO	7204	bcgsc.ca	37	5	14420027	14420027	+	Silent	SNP	A	A	C	rs30612	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	3	0	0	0
C7	730	broad.mit.edu;ucsc.edu	37	5	40959605	40959605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	238	160	78	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89986640	89986640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138714364	138714364	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NRG2	9542	hgsc.bcm.edu	37	5	139422602	139422602	+	Missense_Mutation	SNP	C	C	T	rs188534354		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	8	2	6	0	0
PCDHGA4	56111	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140737208	140737208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149360104	149360104	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	15	8	7	0	0
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	26	0	26	0	0
LINC00518	221718	bcgsc.ca	37	6	10430171	10430171	+	RNA	SNP	T	T	C	rs303061	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
HIST1H3H	8357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27777856	27777856	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	3	0	0	0
ABCF1	23	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30557635	30557635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	61	30	31	0	0
PPP1R18	170954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30652252	30652252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	42	39	2	1	0
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32023746	32023746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NOTCH4	4855	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32166298	32166298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	5	5	0	0	0
CUTA	51596	broad.mit.edu;bcgsc.ca	37	6	33385930	33385930	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	12	9	0	1	2
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33385931	33385931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	7	7	0	0	0
PPARD	5467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35388052	35388052	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KCNK16	83795	bcgsc.ca	37	6	39282806	39282806	+	Missense_Mutation	SNP	G	G	T	rs11756091	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
UNC5CL	222643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41002645	41002645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	1	0	0	0
RCAN2	10231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46214635	46214635	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	2	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51524734	51524734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KHDC1L	100129128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73935131	73935131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
REV3L	5980	hgsc.bcm.edu;bcgsc.ca	37	6	111693904	111693904	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MCM9	254394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119252669	119252669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	1	0	0	0
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138531144	138531144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	0	1	0	0
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168442715	168442715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20782576	20782576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NPVF	64111	ucsc.edu;bcgsc.ca	37	7	25267934	25267934	+	Missense_Mutation	SNP	T	T	C	rs877834	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NPSR1	387129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34698162	34698162	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
AEBP1	165	broad.mit.edu;bcgsc.ca	37	7	44150789	44150789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	6	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	1	0	0	0
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99032679	99032679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	1	1	0	0
MBLAC1	255374	hgsc.bcm.edu	37	7	99725210	99725210	+	Silent	SNP	G	G	T	rs142426754		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103243773	103243773	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	5	4	1	0	0
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138601908	138601908	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SSPO	23145	bcgsc.ca	37	7	149486382	149486382	+	Missense_Mutation	SNP	C	C	G	rs2074704	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150698991	150698991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	1	0	0	0
SLC4A2	6522	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150771214	150771214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	56	36	20	0	0
CSMD1	64478	bcgsc.ca	37	8	3072036	3072036	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10465856	10465856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21845361	21845361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23305367	23305367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	8	5	3	0	0
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	29035052	29035052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	11	7	4	0	0
WRN	7486	bcgsc.ca	37	8	31024654	31024654	+	Missense_Mutation	SNP	T	T	C	rs1346044	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	29	29	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KAT6A	7994	ucsc.edu;bcgsc.ca	37	8	41791017	41791017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	9	3	6	0	0
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53569634	53569634	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	20	20	0	0	0
C8orf46	254778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67428183	67428183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108970363	108970363	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
AARD	441376	hgsc.bcm.edu	37	8	117950768	117950768	+	Missense_Mutation	SNP	G	G	C	rs16889283	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	8	0	8	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	6	0	6	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	11	5	6	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	38	12	26	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MFSD3	113655	broad.mit.edu;bcgsc.ca	37	8	145736053	145736053	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	33	30	3	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	0	2	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214706	214706	+	Missense_Mutation	SNP	G	G	C	rs540473	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	4	1	3	0	0
PGM5P2	595135	broad.mit.edu	37	9	69082095	69082095	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
C9orf41	138199	broad.mit.edu	37	9	77642981	77642983	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
TLE4	7091	broad.mit.edu	37	9	82267611	82267611	+	Missense_Mutation	SNP	G	G	C	rs41307447	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	22	22	0	0	0
C9orf170	401535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	89771511	89771511	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101589096	101589096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	3	2	1	0	0
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104449164	104449164	+	Missense_Mutation	SNP	C	C	T	rs145326290		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135831	126135831	+	Silent	SNP	T	T	C	rs7848449	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
TMEM8C	389827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136379902	136379902	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LRRC26	389816	hgsc.bcm.edu	37	9	140064315	140064315	+	Missense_Mutation	SNP	C	C	A	rs7019671		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
RNR1	6052	bcgsc.ca	37	MT	875	875	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2074	1569	500	0	5
tRNA-Met	0	bcgsc.ca	37	MT	4455	4455	+	RNA	SNP	A	A	G	rs11510098	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	4330	239	4086	1	4
COX1	5742	broad.mit.edu	37	MT	6460	6460	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	30451	23883	6542	8	18
ND4	0	bcgsc.ca	37	MT	11187	11194	+	Frame_Shift_Del	DEL	TGAACGCA	TGAACGCA	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	TGAACGCA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	5821337	5821337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
HDHD1	8226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	7023778	7023778	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	5	2	3	0	0
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8763192	8763192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FRMPD4	9758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12734821	12734821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31196848	31196848	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	10	0	10	0	0
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48935337	48935337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	30	0	30	0	0
MAGIX	79917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49021301	49021301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961529	73961529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ARL13A	392509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100229150	100229150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101139313	101139313	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	1	1	0	0	0
MORF4L2	9643	ucsc.edu	37	X	102931750	102931750	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	278	278	0	0	0
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110439738	110439738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117532433	117532433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
F9	2158	bcgsc.ca	37	X	138633280	138633280	+	Missense_Mutation	SNP	A	A	G	rs6048	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
LDOC1	23641	broad.mit.edu	37	X	140271095	140271095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
TAZ	6901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153647890	153647890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	2	2	0	0	0
FAM163A	148753	broad.mit.edu	37	1	179783093	179783094	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
TPTE2P1	646405	broad.mit.edu	37	13	25527490	25527491	+	RNA	INS	-	-	AAAAAG	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SCAPER	49855	broad.mit.edu	37	15	76998254	76998255	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
FARSB	10056	hgsc.bcm.edu	37	2	223505606	223505607	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
GNB1	2782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1720546	1720547	+	Missense_Mutation	DNP	CA	CA	AC	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
SOAT2	8435	hgsc.bcm.edu	37	12	53509339	53509340	+	Silent	DNP	GC	GC	TT	rs34924760		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69817434	69817435	+	Missense_Mutation	DNP	GA	GA	CT	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	0	0	0	0	0
