Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MMEL1	79258	bcgsc.ca	37	1	2541269	2541269	+	Silent	SNP	A	A	G	rs10797440	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TNFRSF25	8718	hgsc.bcm.edu	37	1	6521701	6521701	+	Silent	SNP	C	C	T	rs149595085	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LRRC38	126755	bcgsc.ca	37	1	13802437	13802437	+	Silent	SNP	G	G	A	rs3013106	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
MST1P2	11209	bcgsc.ca	37	1	16976620	16976620	+	RNA	SNP	A	A	G	rs71269412		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
MST1L	11223	ucsc.edu	37	1	17085872	17085872	+	Missense_Mutation	SNP	A	A	G	rs1806514	by2hit2allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CROCC	9696	hgsc.bcm.edu	37	1	17266514	17266514	+	Silent	SNP	C	C	T	rs141271666	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RPA2	6118	broad.mit.edu;bcgsc.ca	37	1	28240630	28240630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
DMAP1	55929	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	44684101	44684101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RAD54L	8438	bcgsc.ca	37	1	46743900	46743900	+	Silent	SNP	C	C	T	rs1048771	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
INADL	10207	bcgsc.ca	37	1	62261168	62261168	+	Missense_Mutation	SNP	A	A	G	rs7516332	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
GBP2	2634	hgsc.bcm.edu;broad.mit.edu	37	1	89586906	89586912	+	Frame_Shift_Del	DEL	TCCAGAT	TCCAGAT	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TCCAGAT	TCCAGAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
KPRP	448834	broad.mit.edu	37	1	152733496	152733496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181727162	181727162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
JMJD4	65094	hgsc.bcm.edu	37	1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	rs7419238		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237754020	237754020	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
FMN2	56776	mdanderson.org	37	1	240371151	240371151	+	Silent	SNP	T	T	A	rs71646892	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247587530	247587530	+	Missense_Mutation	SNP	G	G	A	rs180177443	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
OR2M1P	388762	bcgsc.ca	37	1	248285248	248285248	+	RNA	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
OR2M3	127062	bcgsc.ca	37	1	248366792	248366792	+	Silent	SNP	T	T	C	rs12562957	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SVIL	6840	bcgsc.ca	37	10	29821523	29821523	+	Silent	SNP	T	T	C	rs1328323	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SFTPD	6441	bcgsc.ca	37	10	81706324	81706324	+	Missense_Mutation	SNP	A	A	G	rs721917	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NOC3L	64318	broad.mit.edu	37	10	96109888	96109888	+	Missense_Mutation	SNP	C	C	T	rs149695235	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LZTS2	84445	broad.mit.edu	37	10	102766682	102766682	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093312	1093312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093375	1093375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651157	1651157	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651159	1651169	+	Frame_Shift_Del	DEL	GCTGTGGCTCT	GCTGTGGCTCT	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
OR52R1	119695	bcgsc.ca	37	11	4825349	4825349	+	Missense_Mutation	SNP	A	A	G	rs17327254	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
OR52E2	119678	bcgsc.ca	37	11	5080844	5080844	+	Missense_Mutation	SNP	T	T	C	rs16909440	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CKAP5	9793	bcgsc.ca	37	11	46784697	46784697	+	Silent	SNP	A	A	C	rs7928445	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56310261	56310261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RHOD	29984	ucsc.edu	37	11	66834252	66834252	+	Silent	SNP	C	C	T	rs2282502	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
UNC93B1	81622	broad.mit.edu	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ARHGAP20	57569	bcgsc.ca	37	11	110450453	110450453	+	Missense_Mutation	SNP	G	G	T	rs149514977	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
DRD2	1813	bcgsc.ca	37	11	113283459	113283459	+	Silent	SNP	G	G	A	rs6277	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NCAPD2	9918	bcgsc.ca	37	12	6632430	6632430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RERG	85004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15262053	15262053	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NFE2	4778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54686624	54686624	+	Missense_Mutation	SNP	C	C	T	rs139796996		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
C12orf29	91298	hgsc.bcm.edu;bcgsc.ca	37	12	88434018	88434020	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TGT	TGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	128900026	128900026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CTAGE11P	647288	ucsc.edu;bcgsc.ca	37	13	75812407	75812407	+	RNA	SNP	G	G	A	rs555846	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
GPC5	2262	bcgsc.ca	37	13	92345579	92345579	+	Missense_Mutation	SNP	C	C	T	rs553717	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RBM23	55147	broad.mit.edu	37	14	23374128	23374128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ADAM21P1	145241	ucsc.edu	37	14	70714087	70714087	+	RNA	SNP	T	T	G	rs79122905		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TMEM63C	57156	bcgsc.ca	37	14	77708804	77708804	+	Silent	SNP	C	C	T	rs61731611	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
AHNAK2	113146	bcgsc.ca	37	14	105410183	105410183	+	Missense_Mutation	SNP	T	T	C	rs10438246	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
AHNAK2	113146	bcgsc.ca	37	14	105416010	105416010	+	Silent	SNP	T	T	C	rs2582511	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
DMXL2	23312	broad.mit.edu	37	15	51756879	51756879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
MTFMT	123263	hgsc.bcm.edu	37	15	65321780	65321780	+	Missense_Mutation	SNP	A	A	T	rs188718836		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
HAPLN3	145864	bcgsc.ca	37	15	89430506	89430506	+	Silent	SNP	C	C	T	rs3743395	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
GABARAPL3	23766	broad.mit.edu	37	15	90892293	90892293	+	RNA	SNP	C	C	T	rs2589973	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
C16orf71	146562	bcgsc.ca	37	16	4797457	4797457	+	Missense_Mutation	SNP	C	C	T	rs17853375	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TAF1C	9013	ucsc.edu	37	16	84213114	84213114	+	Silent	SNP	C	C	T	rs2230130	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
OVCA2	124641	hgsc.bcm.edu	37	17	1945354	1945354	+	Silent	SNP	C	C	A	rs145234879		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ZZEF1	23140	bcgsc.ca	37	17	3916823	3916823	+	Silent	SNP	G	G	A	rs8075562	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LOC100130950	0	bcgsc.ca	37	17	5114271	5114271	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CDRT15L2	256223	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	20483953	20483953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904139	21904139	+	RNA	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TBC1D3P5	440419	bcgsc.ca	37	17	25752333	25752333	+	RNA	SNP	A	A	T	rs8079476	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
VTN	7448	broad.mit.edu	37	17	26694766	26694766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RNF135	84282	hgsc.bcm.edu	37	17	29298390	29298390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CDC27	996	hgsc.bcm.edu;bcgsc.ca	37	17	45234327	45234327	+	Missense_Mutation	SNP	C	C	T	rs7350889	bycluster	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
KPNA2	3838	bcgsc.ca	37	17	66039350	66039350	+	Silent	SNP	A	A	G	rs4638	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
EMILIN2	84034	bcgsc.ca	37	18	2885118	2885118	+	Silent	SNP	C	C	T	rs592120	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TWSG1	57045	hgsc.bcm.edu	37	18	9399488	9399488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ST8SIA5	29906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44260305	44260305	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CDH7	1005	bcgsc.ca	37	18	63511176	63511176	+	Silent	SNP	T	T	C	rs2306675	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CCDC102B	79839	broad.mit.edu;ucsc.edu	37	18	66721363	66721363	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1003374	1003374	+	Silent	SNP	G	G	A	rs34585248		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1004687	1004687	+	Missense_Mutation	SNP	T	T	C	rs12978900	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TMEM259	91304	hgsc.bcm.edu	37	19	1010673	1010673	+	Silent	SNP	G	G	A	rs11540362		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CHAF1A	10036	bcgsc.ca	37	19	4428809	4428809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
HDGFRP2	0	hgsc.bcm.edu	37	19	4499666	4499680	+	In_Frame_Del	DEL	TGGCCGGGGAGGAGG	TGGCCGGGGAGGAGG	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TGGCCGGGGAGGAGG	TGGCCGGGGAGGAGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9086318	9086318	+	Missense_Mutation	SNP	G	G	A	rs4520945	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16338981	16338981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CYP2A13	1553	hgsc.bcm.edu	37	19	41596013	41596013	+	Silent	SNP	A	A	G	rs199984436		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CEACAM1	634	bcgsc.ca	37	19	43031407	43031407	+	Silent	SNP	C	C	G	rs79326931	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CEACAM1	634	bcgsc.ca	37	19	43031434	43031434	+	Missense_Mutation	SNP	T	T	A	rs140316654	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CLASRP	11129	hgsc.bcm.edu	37	19	45567668	45567668	+	Missense_Mutation	SNP	C	C	A	rs71352251		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ZNF610	162963	bcgsc.ca	37	19	52856955	52856955	+	Silent	SNP	C	C	T	rs1961205	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NAT14	57106	hgsc.bcm.edu	37	19	55998262	55998262	+	Missense_Mutation	SNP	C	C	T	rs77664073	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ZSCAN1	284312	hgsc.bcm.edu	37	19	58549354	58549354	+	Silent	SNP	C	C	T	rs113374422	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ANKRD36B	57730	bcgsc.ca	37	2	98129815	98129815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RGPD4	285190	broad.mit.edu	37	2	108475928	108475928	+	Missense_Mutation	SNP	C	C	T	rs2912841		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CLK1	1195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201726549	201726549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
COL6A3	1293	bcgsc.ca	37	2	238243464	238243464	+	Missense_Mutation	SNP	C	C	G	rs2270669	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
COL6A3	1293	bcgsc.ca	37	2	238249630	238249630	+	Silent	SNP	C	C	T	rs4433949	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632784	29632784	+	RNA	SNP	C	C	G	rs6087299		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
IFT52	51098	bcgsc.ca	37	20	42264653	42264653	+	Silent	SNP	G	G	A	rs41296223	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TEKT4P2	100132288	bcgsc.ca	37	21	9927138	9927138	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
COL6A2	1292	hgsc.bcm.edu	37	21	47532288	47532288	+	Missense_Mutation	SNP	G	G	A	rs200710788		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SNAP29	9342	bcgsc.ca	37	22	21213416	21213416	+	Silent	SNP	A	A	G	rs1061064	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659512	24659512	+	RNA	SNP	A	A	G	rs3205838	bysubmitter;by2hit2allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30713517	30713517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CCR2	729230	broad.mit.edu	37	3	46400062	46400062	+	Silent	SNP	G	G	A	rs3092960	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CHST13	166012	hgsc.bcm.edu	37	3	126260995	126260995	+	Silent	SNP	C	C	T	rs7614066	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
EEFSEC	60678	hgsc.bcm.edu	37	3	127872494	127872494	+	Silent	SNP	G	G	T	rs148745324	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
DNAJC13	23317	bcgsc.ca	37	3	132166266	132166266	+	Silent	SNP	T	T	G	rs11917172	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
YEATS2	55689	broad.mit.edu;bcgsc.ca	37	3	183469993	183469993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SDHAP1	255812	broad.mit.edu	37	3	195711423	195711423	+	RNA	SNP	A	A	G	rs2688559		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TBC1D1	23216	hgsc.bcm.edu	37	4	38016372	38016372	+	Silent	SNP	G	G	A	rs61731587		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SHROOM3	57619	bcgsc.ca	37	4	77660731	77660731	+	Missense_Mutation	SNP	C	C	G	rs344141	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
HELQ	113510	broad.mit.edu	37	4	84376805	84376806	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NUDT9	53343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88379078	88379078	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185339341	185339341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	194841	194841	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NIPAL4	348938	broad.mit.edu;bcgsc.ca	37	5	156899408	156899408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
BTNL3	10917	bcgsc.ca	37	5	180432416	180432416	+	Silent	SNP	C	C	T	rs78885278		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
OR2J2	26707	bcgsc.ca	37	6	29141849	29141849	+	Missense_Mutation	SNP	T	T	C	rs3116856	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
HCG9	10255	broad.mit.edu	37	6	29943178	29943178	+	RNA	SNP	A	A	G	rs6903753	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
MUC21	394263	bcgsc.ca	37	6	30954659	30954659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
FGD2	221472	bcgsc.ca	37	6	36976637	36976637	+	Missense_Mutation	SNP	G	G	C	rs831510	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SLC17A5	26503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	74345205	74345205	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
FAM46A	55603	broad.mit.edu	37	6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
HEBP2	23593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138726347	138726347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871097	170871097	+	Silent	SNP	G	G	A	rs200496051		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LOC100132891	0	bcgsc.ca	37	8	72938317	72938317	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
PABPC1	26986	broad.mit.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133144473	133144473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
AQP7	364	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	33386976	33386976	+	Missense_Mutation	SNP	G	G	A	rs143391243	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
AKNA	80709	bcgsc.ca	37	9	117124731	117124731	+	Missense_Mutation	SNP	G	G	A	rs3748176	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
ASTN2	23245	broad.mit.edu	37	9	119448979	119448979	+	Missense_Mutation	SNP	C	C	T	rs10983304	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SLC38A5	92745	bcgsc.ca	37	X	48317386	48317386	+	Missense_Mutation	SNP	A	A	G	rs17281188	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
SLC7A3	84889	bcgsc.ca	37	X	70146475	70146475	+	Missense_Mutation	SNP	G	G	C	rs6525447	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CTAG2	30848	bcgsc.ca	37	X	153881525	153881525	+	Missense_Mutation	SNP	G	G	C	rs17328091	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
KCNN3	3782	broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCT	rs3831942	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
NDUFB5	4711	broad.mit.edu	37	3	179322628	179322629	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
CCDC132	55610	broad.mit.edu	37	7	92923947	92923948	+	Frame_Shift_Ins	INS	-	-	G	rs140810598	bycluster;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
LMX1B	4010	broad.mit.edu	37	9	129376842	129376843	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	0	0	0	0	0
