Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCCP2	84809	broad.mit.edu	37	1	16946662	16946662	+	RNA	SNP	G	G	A	rs1759234	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	0	1	0	0
TRNP1	388610	hgsc.bcm.edu	37	1	27320356	27320356	+	Missense_Mutation	SNP	T	T	C	rs6689941		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44057031	44057031	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65321267	65321267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	3	3	0	0	0
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
KPRP	448834	broad.mit.edu	37	1	152733496	152733496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
F5	2153	broad.mit.edu;bcgsc.ca	37	1	169510485	169510485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186047340	186047340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
TMEM206	55248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212560297	212560297	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ADSS	159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244583531	244583531	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	29599974	29599975	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
LYZL1	84569	hgsc.bcm.edu	37	10	29599976	29599977	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
SIRT1	23411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69651221	69651221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CYP26C1	340665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94821064	94821064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CDHR5	53841	bcgsc.ca	37	11	621634	621634	+	Silent	SNP	G	G	A	rs2740373	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
OR52E2	119678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5080032	5080032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
NAV2	89797	bcgsc.ca	37	11	20067064	20067064	+	Silent	SNP	C	C	T	rs7125647	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
FOLH1	2346	bcgsc.ca	37	11	49204732	49204732	+	Missense_Mutation	SNP	T	T	C	rs199782232		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
OR4A15	81328	bcgsc.ca	37	11	55135435	55135435	+	Missense_Mutation	SNP	C	C	T	rs1425193	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
OR5D13	390142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55541619	55541619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
INPPL1	3636	broad.mit.edu	37	11	71949087	71949087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52828026	52828026	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	36	34	2	0	0
FAM101A	144347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124798764	124798764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
TUBA3C	7278	bcgsc.ca	37	13	19751262	19751262	+	Silent	SNP	G	G	A	rs117337915	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
UBL3	5412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30346294	30346294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CCDC169-SOHLH2	100526761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36748932	36748932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
RTN1	6252	broad.mit.edu;bcgsc.ca	37	14	60194375	60194375	+	Missense_Mutation	SNP	C	C	G	rs1132362	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77723002	77723002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
FLRT2	23768	bcgsc.ca	37	14	86089315	86089315	+	Missense_Mutation	SNP	G	G	A	rs17646457	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
MPI	4351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75185139	75185139	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
DNM1P35	100128285	broad.mit.edu	37	15	76023635	76023636	+	RNA	DEL	AC	AC	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2140972	2140972	+	Silent	SNP	G	G	A	rs77634115		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	8	4	4	0	0
AMDHD2	51005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2580311	2580311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	13	13	0	0	0
LOC100506060	0	broad.mit.edu	37	16	70253717	70253717	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
IST1	9798	ucsc.edu	37	16	71956529	71956529	+	Silent	SNP	C	C	T	rs28701631	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
FA2H	79152	broad.mit.edu;bcgsc.ca	37	16	74752999	74752999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	83378514	83378514	+	Silent	SNP	G	G	T	rs201452763	alternate_allele	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
DOC2B	8447	broad.mit.edu;bcgsc.ca	37	17	6115	6115	+	Silent	SNP	G	G	C	rs61739713	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CTDNEP1	23399	bcgsc.ca	37	17	7149369	7149369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	26	26	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10310241	10310241	+	Missense_Mutation	SNP	C	C	T	rs28932773		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21906445	21906445	+	RNA	SNP	A	A	G	rs4365334	bycluster;byfrequency;byhapmap	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21906820	21906820	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	5257	5231	7	12	7
EPN3	55040	broad.mit.edu	37	17	48614456	48614456	+	Missense_Mutation	SNP	G	G	A	rs149893296	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
LOC100294362	0	bcgsc.ca	37	17	78341962	78341962	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CPLX4	339302	hgsc.bcm.edu;bcgsc.ca	37	18	56979929	56979929	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ATP9B	374868	hgsc.bcm.edu	37	18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	rs4078115		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
KHSRP	8570	broad.mit.edu	37	19	6417772	6417772	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	12	12	0	0	0
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9063150	9063150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
EMR2	30817	bcgsc.ca	37	19	14877820	14877820	+	Missense_Mutation	SNP	G	G	A	rs74182239		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
URI1	8725	hgsc.bcm.edu	37	19	30433556	30433556	+	Silent	SNP	C	C	G	rs200928000	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	0	1	0	0
RHPN2	85415	ucsc.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CATSPERG	57828	broad.mit.edu	37	19	38827960	38827960	+	Missense_Mutation	SNP	T	T	C	rs2302182	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
TARM1	441864	broad.mit.edu	37	19	54577305	54577305	+	Silent	SNP	C	C	T	rs58216808		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
DNAJC27-AS1	729723	bcgsc.ca	37	2	25229215	25229215	+	RNA	SNP	G	G	A	rs7558841	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
KHK	3795	bcgsc.ca	37	2	27315252	27315252	+	Missense_Mutation	SNP	G	G	A	rs2304681	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
FEZ2	9637	hgsc.bcm.edu	37	2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	rs1544655		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	2	2	0	0	0
MKI67IP	84365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	122493289	122493289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	2	1	1	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152382545	152382545	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu	37	2	168099448	168099448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
C2orf83	56918	broad.mit.edu;ucsc.edu	37	2	228477731	228477731	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
PID1	55022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	229890685	229890685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234621931	234621931	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ESPNL	339768	hgsc.bcm.edu	37	2	239009336	239009336	+	Silent	SNP	G	G	A	rs61744770	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2945574	2945574	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	0	1	0	0
ADAM33	80332	hgsc.bcm.edu	37	20	3654433	3654433	+	Silent	SNP	C	C	T	rs2271511	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
C20orf78	100128496	broad.mit.edu	37	20	18790675	18790675	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
INSM1	3642	hgsc.bcm.edu	37	20	20348962	20348962	+	Silent	SNP	C	C	T	rs111558392	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	14	14	0	0	0
PIGU	128869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33225690	33225693	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	CTTT	CTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47605959	47605959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
B4GALT5	9334	ucsc.edu;bcgsc.ca	37	20	48252968	48252968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	4	3	1	0	0
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56090878	56090878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
GSTT2	2953	bcgsc.ca	37	22	24325062	24325062	+	Missense_Mutation	SNP	G	G	A	rs78284383	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
FAM212A	389119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49842192	49842192	+	Silent	SNP	C	C	T	rs146996587		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	2	2	0	0	0
ITIH1	3697	bcgsc.ca	37	3	52824813	52824813	+	Silent	SNP	C	C	T	rs146607393	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164748583	164748583	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	9	6	3	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537081	88537081	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114244940	114244940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
WDR17	116966	bcgsc.ca	37	4	177061126	177061126	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	13913969	13913969	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CKMT2	1160	broad.mit.edu;bcgsc.ca	37	5	80550829	80550829	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	7	7	0	0	0
GPR150	285601	hgsc.bcm.edu	37	5	94956619	94956619	+	Missense_Mutation	SNP	G	G	C	rs113272282		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CD14	929	broad.mit.edu	37	5	140012352	140012352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	4	4	0	0	0
DND1	373863	hgsc.bcm.edu	37	5	140052320	140052320	+	Missense_Mutation	SNP	T	T	C	rs201446376	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	4	4	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140572420	140572420	+	Missense_Mutation	SNP	A	A	G	rs61740634		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
KCTD16	57528	broad.mit.edu	37	5	143853531	143853531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
GRM6	2916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178419079	178419079	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CANX	821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179149880	179149880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	13	13	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CYP21A2	1589	bcgsc.ca	37	6	32006886	32006886	+	Splice_Site	SNP	G	G	A	rs75730897	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	3	1	2	0	0
ITPR3	3710	bcgsc.ca	37	6	33657016	33657016	+	Silent	SNP	C	C	T	rs150616390	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
MCM9	254394	bcgsc.ca	37	6	119136759	119136759	+	Missense_Mutation	SNP	A	A	C	rs65685	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
LAMA2	3908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	129381036	129381036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
EZR	7430	broad.mit.edu	37	6	159188467	159188467	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	18	17	1	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
C7orf25	79020	hgsc.bcm.edu	37	7	42951515	42951515	+	Missense_Mutation	SNP	G	G	A	rs647117	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
FBXL13	222235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102553550	102553550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	1	0	0	0
ASB15	142685	bcgsc.ca	37	7	123269118	123269118	+	Missense_Mutation	SNP	G	G	C	rs4731112	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu	37	7	149462337	149462337	+	Silent	SNP	G	G	A	rs855667	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150500884	150500884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
SFTPC	6440	bcgsc.ca	37	8	22021037	22021037	+	Missense_Mutation	SNP	C	C	A	rs4715	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	4685143	4685143	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	3	1	2	0	0
PTPRD	5789	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8485824	8485824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
PTGER4P2-CDK2AP2P2	442421	bcgsc.ca	37	9	66499739	66499739	+	RNA	SNP	G	G	A	rs199935942		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
PTGER4P2-CDK2AP2P2	442421	bcgsc.ca	37	9	66499793	66499793	+	RNA	SNP	G	G	A	rs4567144	bycluster	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68429289	68429289	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	6	6	0	0	0
IARS	3376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94985663	94985663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	11	7	4	0	0
ALG2	85365	hgsc.bcm.edu	37	9	101983912	101983912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	1	0	1	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
RNR2	6053	broad.mit.edu;bcgsc.ca	37	MT	2534	2534	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	17781	17333	437	4	7
ND1	10625	broad.mit.edu	37	MT	3661	3661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	14541	14117	408	5	11
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11909	11909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	37237	8644	28540	24	29
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12859	12859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	4164	620	3542	1	1
ND5	0	broad.mit.edu	37	MT	13041	13041	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	4954	4828	119	3	4
ARSD	414	bcgsc.ca	37	X	2836037	2836037	+	Missense_Mutation	SNP	G	G	C	rs211653	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
ASB11	140456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	15332559	15332559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	32407770	32407770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
TCEAL3	85012	broad.mit.edu	37	X	102864220	102864220	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	28	27	1	0	0
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	138713564	138713564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
IL9R	3581	broad.mit.edu	37	X	155239804	155239804	+	Missense_Mutation	SNP	C	C	G	rs71382248		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
EVI5L	115704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7915003	7915004	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	0	0	0	0	0
