Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf170	84808	bcgsc.ca	37	1	916590	916590	+	RNA	SNP	G	G	A	rs28566954		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MST1L	11223	bcgsc.ca	37	1	17085780	17085780	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KANK4	163782	bcgsc.ca	37	1	62732421	62732421	+	Missense_Mutation	SNP	T	T	C	rs11207949	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LHX8	431707	ucsc.edu;bcgsc.ca	37	1	75622742	75622742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KIAA1324	57535	bcgsc.ca	37	1	109656946	109656946	+	Silent	SNP	T	T	C	rs667524	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
HIPK1	204851	broad.mit.edu	37	1	114483599	114483599	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SPRR3	6707	broad.mit.edu	37	1	152975659	152975682	+	In_Frame_Del	DEL	GAGCCAGGCTGTACCAAGGTCCCT	GAGCCAGGCTGTACCAAGGTCCCT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GON4L	54856	broad.mit.edu	37	1	155733245	155733245	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GON4L	54856	broad.mit.edu	37	1	155733257	155733257	+	Silent	SNP	T	T	C	rs607834	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158058203	158058203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SELE	6401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169697005	169697005	+	Missense_Mutation	SNP	A	A	G	rs199700651		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MTR	4548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237060314	237060314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PRR26	414235	bcgsc.ca	37	10	697297	697297	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MRC1	4360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	18122634	18122634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GPRIN2	9721	ucsc.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs9422022	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TYSND1	219743	hgsc.bcm.edu	37	10	71906010	71906010	+	Silent	SNP	C	C	G	rs11549688		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93711281	93711281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GOT1	2805	broad.mit.edu	37	10	101157345	101157345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SEMA4G	57715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102740027	102740027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu	37	10	108924150	108924150	+	Silent	SNP	G	G	C	rs61732174		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012315	135012315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PNPLA2	57104	hgsc.bcm.edu	37	11	824789	824789	+	Missense_Mutation	SNP	T	T	C	rs1138693		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092966	1092966	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CHRNA10	57053	hgsc.bcm.edu	37	11	3688934	3688934	+	Silent	SNP	G	G	A	rs147957618		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RBMXL2	27288	hgsc.bcm.edu	37	11	7110751	7110751	+	Missense_Mutation	SNP	A	A	G	rs11041171		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SEC14L1P1	729799	ucsc.edu;bcgsc.ca	37	11	43920480	43920480	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DGKZ	8525	hgsc.bcm.edu	37	11	46387868	46387868	+	Missense_Mutation	SNP	A	A	G	rs1317826	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TRIM51	84767	hgsc.bcm.edu;broad.mit.edu	37	11	55658957	55658957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57076797	57076797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
INCENP	3619	hgsc.bcm.edu	37	11	61914282	61914282	+	Silent	SNP	G	G	A	rs113981632		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64480641	64480641	+	Silent	SNP	G	G	A	rs2518907		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751604	+	In_Frame_Del	DEL	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PRICKLE1	144165	bcgsc.ca	37	12	42854208	42854208	+	Silent	SNP	A	A	G	rs3747563	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
NACA	4666	hgsc.bcm.edu	37	12	57107325	57107325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57559628	57559628	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81769579	81769579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CCDC59	29080	bcgsc.ca	37	12	82752037	82752037	+	Missense_Mutation	SNP	T	T	G	rs79245219	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PTPN11	5781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112893833	112893833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133067343	133067343	+	Missense_Mutation	SNP	A	A	G	rs4883578		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PXMP2	5827	hgsc.bcm.edu	37	12	133264332	133264332	+	Silent	SNP	C	C	T	rs11538534	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	115027384	115027384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MBIP	51562	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36789780	36789780	+	Silent	SNP	C	C	G	rs138198154	byfrequency;alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DDHD1	80821	bcgsc.ca	37	14	53619554	53619554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
HSPA2	3306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65009483	65009483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79434571	79434571	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644147	104644147	+	Silent	SNP	C	C	T	rs11621644	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CEP170B	283638	broad.mit.edu	37	14	105352650	105352650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KIF23	9493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69721517	69721517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
C1QTNF8	390664	hgsc.bcm.edu	37	16	1143513	1143529	+	Frame_Shift_Del	DEL	GGCCGGCTTGACCAGGT	GGCCGGCTTGACCAGGT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GGCCGGCTTGACCAGGT	GGCCGGCTTGACCAGGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CACNA1H	8912	broad.mit.edu	37	16	1250295	1250295	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SLC12A4	6560	bcgsc.ca	37	16	67984589	67984589	+	Silent	SNP	A	A	G	rs11542821	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ANKRD11	29123	hgsc.bcm.edu	37	16	89346883	89346883	+	Missense_Mutation	SNP	C	C	G	rs60520302	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095558	90095558	+	Missense_Mutation	SNP	C	C	T	rs76646627		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FXR2	9513	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7495630	7495630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38289309	38289309	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KCNH4	23415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40322162	40322162	+	Silent	SNP	C	C	T	rs140040426	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254417	42254417	+	Missense_Mutation	SNP	A	A	G	rs7212854	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RNF126P1	376412	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	55123104	55123104	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
NT5C	30833	hgsc.bcm.edu	37	17	73127683	73127683	+	Silent	SNP	T	T	C	rs4788867	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
C17orf70	80233	broad.mit.edu	37	17	79517591	79517591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
UTS2R	2837	hgsc.bcm.edu	37	17	80332223	80332223	+	Missense_Mutation	SNP	C	C	G	rs41344948	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	rs7506026		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
L3MBTL4	91133	broad.mit.edu;bcgsc.ca	37	18	6093437	6093437	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7023307	7023307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28651720	28651720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TCEB3C	162699	broad.mit.edu;bcgsc.ca	37	18	44555127	44555127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1127619	1127619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LINGO3	645191	hgsc.bcm.edu	37	19	2290499	2290499	+	Missense_Mutation	SNP	C	C	T	rs7258841		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MCOLN1	57192	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	7594484	7594484	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZNF799	90576	ucsc.edu	37	19	12501907	12501907	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19764811	19764811	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36342537	36342537	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SYNE4	163183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36494356	36494364	+	In_Frame_Del	DEL	GAGGAGGAA	GAGGAGGAA	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAGGAGGAA	GAGGAGGAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CAPNS1	826	broad.mit.edu	37	19	36633865	36633865	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
C19orf54	284325	hgsc.bcm.edu;broad.mit.edu	37	19	41248646	41248647	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50104897	50104897	+	Missense_Mutation	SNP	C	C	T	rs189937355		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TSEN34	79042	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54695770	54695770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LILRB3	11025	ucsc.edu	37	19	54725992	54725992	+	Silent	SNP	G	G	A	rs148339740	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PTPRH	5794	bcgsc.ca	37	19	55715359	55715359	+	Missense_Mutation	SNP	A	A	G	rs45493898	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZNF784	147808	hgsc.bcm.edu	37	19	56133261	56133261	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RHOB	388	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20647308	20647308	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RMDN2	151393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	38216713	38216713	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74643337	74643337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
HTRA2	27429	hgsc.bcm.edu	37	2	74757554	74757554	+	Missense_Mutation	SNP	G	G	T	rs72470544	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ATOH8	84913	hgsc.bcm.edu	37	2	85981761	85981761	+	Missense_Mutation	SNP	T	T	C	rs17851881		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LINC00152	112597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	87820902	87820902	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TEKT4	150483	broad.mit.edu	37	2	95537377	95537377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CNNM3	26505	hgsc.bcm.edu	37	2	97482167	97482167	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113079374	113079374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
HS6ST1	9394	bcgsc.ca	37	2	129075961	129075961	+	Silent	SNP	T	T	C	rs61732881	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169853195	169853195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MIR548N	100302152	bcgsc.ca	37	2	179527972	179527972	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TMEM194B	100131211	hgsc.bcm.edu	37	2	191399378	191399378	+	Missense_Mutation	SNP	C	C	G	rs13412879		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216299458	216299458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SPHKAP	80309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228883336	228883336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CD93	22918	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23065458	23065458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KCNG1	3755	broad.mit.edu	37	20	49626376	49626376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KCNQ2	3785	hgsc.bcm.edu	37	20	62038378	62038378	+	Silent	SNP	A	A	T	rs1801471	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
HELZ2	85441	hgsc.bcm.edu	37	20	62194713	62194713	+	Missense_Mutation	SNP	A	A	C	rs3810486	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62724242	62724242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DOPEY2	9980	broad.mit.edu	37	21	37635944	37635944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TMPRSS3	64699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43808632	43808632	+	Missense_Mutation	SNP	C	C	T	rs139484231		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CRYBB3	1417	bcgsc.ca	37	22	25601196	25601196	+	Silent	SNP	C	C	G	rs9608378	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	C	rs12159707		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FAM19A5	25817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	49042499	49042499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ULK4	54986	bcgsc.ca	37	3	41756965	41756965	+	Missense_Mutation	SNP	C	C	T	rs61744388	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SETD2	29072	bcgsc.ca	37	3	47162661	47162661	+	Silent	SNP	A	A	G	rs6767907	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126739102	126739102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
H1FX-AS1	339942	broad.mit.edu	37	3	129042263	129042263	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PRR23C	389152	hgsc.bcm.edu	37	3	138763343	138763343	+	Silent	SNP	T	T	G	rs6804898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SAMD7	344658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169654233	169654233	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CLCN2	1181	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184072696	184072696	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184072697	184072697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LRRC15	131578	hgsc.bcm.edu	37	3	194080017	194080213	+	Frame_Shift_Del	DEL	GCCTGCCTCTTTAACACTCATTGGGTGCCTTCATCTGCATCAGGACAGCTTGGCTCCTCTTCTTGCAGCAGCAACAGCCGACGCAGGCAGCCAGGGAGCAGGCCAGGGCGACAATGCCAATTACAATGGCGGCAATGGCCAGCCCGCTCTGGGCCTGGGTCATGCCCCAAACGCTGCGGTCATCAGTGACCTGAATG	GCCTGCCTCTTTAACACTCATTGGGTGCCTTCATCTGCATCAGGACAGCTTGGCTCCTCTTCTTGCAGCAGCAACAGCCGACGCAGGCAGCCAGGGAGCAGGCCAGGGCGACAATGCCAATTACAATGGCGGCAATGGCCAGCCCGCTCTGGGCCTGGGTCATGCCCCAAACGCTGCGGTCATCAGTGACCTGAATG	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCCTGCCTCTTTAACACTCATTGGGTGCCTTCATCTGCATCAGGACAGCTTGGCTCCTCTTCTTGCAGCAGCAACAGCCGACGCAGGCAGCCAGGGAGCAGGCCAGGGCGACAATGCCAATTACAATGGCGGCAATGGCCAGCCCGCTCTGGGCCTGGGTCATGCCCCAAACGCTGCGGTCATCAGTGACCTGAATG	GCCTGCCTCTTTAACACTCATTGGGTGCCTTCATCTGCATCAGGACAGCTTGGCTCCTCTTCTTGCAGCAGCAACAGCCGACGCAGGCAGCCAGGGAGCAGGCCAGGGCGACAATGCCAATTACAATGGCGGCAATGGCCAGCCCGCTCTGGGCCTGGGTCATGCCCCAAACGCTGCGGTCATCAGTGACCTGAATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FAM200B	285550	broad.mit.edu	37	4	15689928	15689928	+	Missense_Mutation	SNP	G	G	A	rs4235380	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
AFP	174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74313330	74313330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CXCL9	4283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76926002	76926002	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537151	88537151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537162	88537162	+	Silent	SNP	C	C	T	rs200745922	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537234	88537234	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123201033	123201033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CCRN4L	25819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	139966424	139966424	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	144469148	144469148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PALLD	23022	broad.mit.edu;bcgsc.ca	37	4	169606648	169606648	+	Missense_Mutation	SNP	A	A	T	rs140454899	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ANKH	56172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14758635	14758635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ANKRD55	79722	broad.mit.edu	37	5	55407592	55407592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70819810	70819810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ANKRD34B	340120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79855316	79855316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CHSY3	337876	hgsc.bcm.edu	37	5	129240972	129240972	+	Silent	SNP	G	G	C	rs33917	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PWWP2A	114825	hgsc.bcm.edu	37	5	159546158	159546158	+	Missense_Mutation	SNP	G	G	A	rs200008605		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SPDL1	54908	bcgsc.ca	37	5	169021610	169021610	+	Silent	SNP	C	C	T	rs4493692	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FAM153A	285596	bcgsc.ca	37	5	177171892	177171892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30917535	30917535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31324602	31324604	+	In_Frame_Del	DEL	TCT	TCT	-	rs67385961		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PNPLA1	285848	broad.mit.edu	37	6	36263170	36263170	+	Silent	SNP	C	C	T	rs139173161		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C	rs7451102		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271959	132271959	+	Silent	SNP	T	T	G	rs12206231		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
VNN3	55350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	133047878	133047878	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	134494667	134494669	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GAC	GAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MTRF1L	54516	hgsc.bcm.edu	37	6	153323806	153323806	+	Silent	SNP	A	A	G	rs3818126	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657616	72657616	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GNB2	2783	broad.mit.edu	37	7	100274423	100274424	+	Splice_Site	DEL	GT	GT	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZNF212	7988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148951008	148951008	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
RP1L1	94137	bcgsc.ca	37	8	10469233	10469233	+	Missense_Mutation	SNP	A	A	G	rs35602868	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FBXO16	157574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28309857	28309857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649601	144649601	+	Silent	SNP	A	A	G	rs13268196		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145106939	145106940	+	Splice_Site	DEL	CC	CC	-	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68428839	68428839	+	RNA	SNP	C	C	A	rs78703907	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
LMX1B	4010	broad.mit.edu	37	9	129376780	129376780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139360883	139360883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ND1	10625	broad.mit.edu	37	MT	3922	3922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ARHGAP6	395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11204435	11204435	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ATP6AP2	10159	hgsc.bcm.edu	37	X	40458870	40458870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
PHF8	23133	broad.mit.edu;bcgsc.ca	37	X	54014243	54014243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
BEX4	56271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102471120	102471120	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MIR542	664617	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133675462	133675462	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135432457	135432457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
ARHGAP4	393	ucsc.edu;bcgsc.ca	37	X	153174968	153174968	+	Silent	SNP	G	G	A	rs61749033	byfrequency	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
CROCCP2	84809	broad.mit.edu	37	1	16953828	16953829	+	RNA	INS	-	-	A	rs57007114	alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124824739	124824740	+	Frame_Shift_Ins	INS	-	-	GCCG	rs61519723	bycluster;alternate_allele	TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
MEGF11	84465	broad.mit.edu	37	15	66209208	66209209	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699367	26699368	+	Frame_Shift_Ins	INS	-	-	C	rs34421136		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
AATK	9625	hgsc.bcm.edu;broad.mit.edu	37	17	79093270	79093271	+	In_Frame_Ins	INS	-	-	GGGCGT	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26062257	26062258	+	RNA	INS	-	-	GGCC	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;bcgsc.ca	37	5	127685053	127685054	+	Frame_Shift_Ins	INS	-	-	CAGTCCCATCCAA	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
DPY19L2P4	442523	broad.mit.edu	37	7	89748927	89748928	+	RNA	INS	-	-	C	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
COG8	84342	hgsc.bcm.edu;bcgsc.ca	37	16	69368962	69368963	+	Missense_Mutation	DNP	AT	AT	TC	novel		TCGA-OR-A5LI-01A-11D-A30A-10	TCGA-OR-A5LI-10A-01D-A30A-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8ab58845-5c4f-49a5-89c4-b173303f0667	ad685e97-6dbd-4cf4-8afb-136bcec42297	0	0	0	0	0
