Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
CCDC30	728621	bcgsc.ca	37	1	43047057	43047057	+	Silent	SNP	A	A	G	rs12037518	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	6	6	0	0	0
CTH	1491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	70904780	70904784	+	Frame_Shift_Del	DEL	ATAGC	ATAGC	-	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	ATAGC	ATAGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
GPR88	54112	hgsc.bcm.edu	37	1	101005425	101005425	+	Silent	SNP	G	G	A	rs201200849	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	3	0	3	0	0
PLEKHO1	51177	ucsc.edu	37	1	150131221	150131221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	59	46	13	0	0
CEP350	9857	ucsc.edu;bcgsc.ca	37	1	179956383	179956383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183867009	183867009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	25	4	21	0	0
IKBKE	9641	bcgsc.ca	37	1	206651107	206651107	+	Silent	SNP	G	G	A	rs2297545	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	9	0	8	1	0
OBSCN	84033	hgsc.bcm.edu	37	1	228399799	228399799	+	Silent	SNP	C	C	T	rs11582369	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228399803	228399803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	9	9	0	0	0
ARHGAP22	58504	hgsc.bcm.edu	37	10	49659006	49659006	+	Missense_Mutation	SNP	G	G	A	rs80345791		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	2	0	2	0	0
GLUD1	2746	broad.mit.edu	37	10	88817461	88817461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129913821	129913821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	rs10747057	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	21	0	21	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	65	2	63	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
LSP1	4046	broad.mit.edu	37	11	1887806	1887806	+	Missense_Mutation	SNP	T	T	A	rs7938342	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	3	3	0	0	0
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22279254	22279254	+	Missense_Mutation	SNP	C	C	T	rs148698633		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	6	0	6	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
TNFRSF1A	7132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6439136	6439136	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	319	185	134	0	0
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	59268001	59268001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	14	8	6	0	0
TMCO3	55002	bcgsc.ca	37	13	114152755	114152755	+	Silent	SNP	C	C	T	rs2260218	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	37	37	0	0	0
ATP10A	57194	bcgsc.ca	37	15	25926186	25926186	+	Silent	SNP	G	G	A	rs2076743	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	3	3	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
SOLH	6650	hgsc.bcm.edu	37	16	597453	597453	+	Silent	SNP	C	C	T	rs141612773	by1000genomes	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	10	3	7	0	0
SPIRE2	84501	bcgsc.ca	37	16	89921057	89921057	+	Missense_Mutation	SNP	A	A	G	rs139065194		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	1	0	1	0	0
SMG6	23293	ucsc.edu	37	17	2203570	2203570	+	Silent	SNP	G	G	C	rs150211793	byfrequency;alternate_allele	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	12	12	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274518	39274518	+	Missense_Mutation	SNP	C	C	T	rs9897031		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
HSD17B1	3292	hgsc.bcm.edu	37	17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	rs605059	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
LRRC37A4P	55073	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
COG1	9382	bcgsc.ca	37	17	71197439	71197439	+	Silent	SNP	C	C	T	rs1551036	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	18	18	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
ODF3L2	284451	hgsc.bcm.edu	37	19	464080	464080	+	Missense_Mutation	SNP	C	C	T	rs76592524		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	4	1	3	0	0
POLRMT	5442	hgsc.bcm.edu	37	19	621561	621561	+	Missense_Mutation	SNP	C	C	A	rs10421235		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	21	10	11	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	3	1	2	0	0
ARRDC2	27106	hgsc.bcm.edu	37	19	18112361	18112361	+	Missense_Mutation	SNP	C	C	T	rs113540008		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	5	0	5	0	0
GPATCH1	55094	bcgsc.ca	37	19	33579128	33579128	+	Silent	SNP	T	T	C	rs7259333	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	4	4	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
IRGC	56269	broad.mit.edu;bcgsc.ca	37	19	44223431	44223431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
SIX5	147912	broad.mit.edu;bcgsc.ca	37	19	46269609	46269609	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	2	2	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	3	3	0	0	0
PPFIA3	8541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49645325	49645325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	5	5	0	0	0
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	42	39	3	0	0
LILRA3	11026	bcgsc.ca	37	19	54804167	54804167	+	Missense_Mutation	SNP	G	G	A	rs11574606	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	1	1	0	0	0
ZNF471	57573	broad.mit.edu	37	19	57036436	57036436	+	Missense_Mutation	SNP	G	G	T	rs75422502		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	4	2	2	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
RANBP2	5903	broad.mit.edu;bcgsc.ca	37	2	109382319	109382319	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	12	12	0	0	0
FOXD4L1	200350	mdanderson.org	37	2	114257443	114257443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	1	0	1	0	0
C2orf54	79919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241835134	241835134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
OTOR	56914	hgsc.bcm.edu	37	20	16729548	16729548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
CST3	1471	hgsc.bcm.edu	37	20	23618488	23618488	+	Silent	SNP	G	G	A	rs1055084		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	644	294	350	0	0
MANBAL	63905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35944722	35944722	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
NRIP1	8204	broad.mit.edu	37	21	16337507	16337507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	12	12	0	0	0
LTN1	26046	ucsc.edu;bcgsc.ca	37	21	30341891	30341891	+	Missense_Mutation	SNP	A	A	G	rs2254796	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	1	1	0	0	0
PLAC4	191585	bcgsc.ca	37	21	42551432	42551432	+	Nonsense_Mutation	SNP	T	T	A	rs5019194		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
KRTAP10-6	386674	ucsc.edu	37	21	46011987	46011987	+	Missense_Mutation	SNP	A	A	G	rs201334923		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20779768	20779768	+	Missense_Mutation	SNP	G	G	C	rs874101	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
RAB36	9609	bcgsc.ca	37	22	23503121	23503121	+	Silent	SNP	G	G	A	rs5759611	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	2	2	0	0	0
ZDHHC8P1	150244	broad.mit.edu;bcgsc.ca	37	22	23736213	23736213	+	RNA	SNP	T	T	C	rs7290316	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	1	1	0	0	0
ZDHHC8P1	150244	broad.mit.edu;bcgsc.ca	37	22	23736241	23736241	+	RNA	SNP	G	G	A	rs34481096	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	2	0	2	0	0
FAT4	79633	bcgsc.ca	37	4	126238924	126238924	+	Missense_Mutation	SNP	A	A	T	rs6847454	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	2	2	0	0	0
EDIL3	10085	bcgsc.ca	37	5	83259162	83259162	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	133	133	0	0	0
MAN2A1	4124	broad.mit.edu;bcgsc.ca	37	5	109091082	109091082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	22	22	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730190	138730190	+	Missense_Mutation	SNP	T	T	A	rs199886274		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	A	G	rs41559716	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	892	890	1	1	0
MCCD1	401250	bcgsc.ca	37	6	31497706	31497706	+	Silent	SNP	C	C	T	rs2075582	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
HGC6.3	0	broad.mit.edu	37	6	168377311	168377313	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372499	5372499	+	Silent	SNP	C	C	T	rs113405524		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	22348060	22348060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	104	0	104	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	36	0	36	0	0
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51111334	51111334	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu	37	7	53103693	53103693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
INTS4L2	644619	broad.mit.edu	37	7	65150816	65150816	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
PMS2P4	5382	broad.mit.edu	37	7	66762433	66762433	+	RNA	DEL	A	A	-	rs60169909	alternate_allele	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
MLL3	58508	bcgsc.ca	37	7	151962269	151962269	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	1	1	0	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	1	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1626628	1626628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940658	144940658	+	Missense_Mutation	SNP	C	C	T	rs201270359		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	5	5	0	0	0
CTSL1	1514	ucsc.edu;bcgsc.ca	37	9	90346015	90346015	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	325	49	276	0	0
SECISBP2	79048	ucsc.edu	37	9	91947874	91947874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	26	26	0	0	0
PALM2-AKAP2	445815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112899504	112899504	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	26	18	8	0	0
GSN	2934	bcgsc.ca	37	9	124083614	124083614	+	Silent	SNP	C	C	T	rs2304393	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	286	286	0	0	0
NR5A1	2516	broad.mit.edu	37	9	127262468	127262468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	49	49	0	0	0
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137676893	137676893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	9	6	3	0	0
RBBP7	5931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16871808	16871808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	5	0	5	0	0
KIAA1210	57481	broad.mit.edu	37	X	118222406	118222406	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
LAG3	3902	hgsc.bcm.edu	37	12	6887493	6887494	+	In_Frame_Ins	INS	-	-	CCGGAG	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
MYO1A	4640	broad.mit.edu	37	12	57422572	57422573	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
PLA2G1B	5319	broad.mit.edu	37	12	120763699	120763700	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
PVRL3	25945	broad.mit.edu	37	3	110863854	110863855	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	0	0	0	0	0
