Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305303	6305303	+	Silent	SNP	C	C	A	rs61760837		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
CTNNBIP1	56998	broad.mit.edu	37	1	9910794	9910794	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	18	18	0	0	0
PGD	5226	bcgsc.ca	37	1	10460485	10460485	+	Silent	SNP	T	T	C	rs1049887	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	51	51	0	0	0
PRAMEF11	440560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12884876	12884876	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
FUCA1	2517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24186340	24186340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	65	54	11	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
EPHA10	284656	hgsc.bcm.edu	37	1	38227086	38227086	+	Missense_Mutation	SNP	A	A	T	rs4653328	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
BMP8A	353500	hgsc.bcm.edu	37	1	39957913	39957913	+	Missense_Mutation	SNP	A	A	G	rs4660269	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271912	45271912	+	Silent	SNP	G	G	A	rs17886118	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
ODF2L	57489	ucsc.edu	37	1	86842004	86842004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	14	11	3	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	5	4	1	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	13	6	7	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	14	0	14	0	0
HRNR	388697	bcgsc.ca	37	1	152193286	152193286	+	Missense_Mutation	SNP	G	G	T	rs7545406	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
HRNR	388697	bcgsc.ca	37	1	152193291	152193291	+	Silent	SNP	G	G	T	rs6587652	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281825	152281825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	2	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154842333	154842333	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	150	138	11	0	1
RRNAD1	51093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156703253	156703253	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	26	25	1	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	6	0	6	0	0
BPNT1	10380	ucsc.edu	37	1	220231276	220231276	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	110	109	1	0	0
C10orf71	118461	bcgsc.ca	37	10	50533617	50533617	+	Silent	SNP	T	T	C	rs2377940	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
STAMBPL1	57559	broad.mit.edu;bcgsc.ca	37	10	90665212	90665212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
MYOF	26509	bcgsc.ca	37	10	95107428	95107428	+	Missense_Mutation	SNP	G	G	A	rs11187393	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	24	24	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	7	0	7	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	60	29	31	0	0
MUC2	4583	bcgsc.ca	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	rs199525790		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
STIM1	6786	bcgsc.ca	37	11	4103524	4103524	+	Silent	SNP	A	A	G	rs2304891	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	42	42	0	0	0
NLRP10	338322	broad.mit.edu	37	11	7982353	7982353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
FNBP4	23360	hgsc.bcm.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	GGTGGT	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	GGTGGT	GGTGGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
FNBP4	23360	hgsc.bcm.edu	37	11	47788695	47788695	+	Missense_Mutation	SNP	G	G	C	rs11039375	byfrequency;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	2	0	2	0	0
SLC22A24	283238	broad.mit.edu;bcgsc.ca	37	11	62886800	62886800	+	Missense_Mutation	SNP	G	G	C	rs4963245	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809090	64809090	+	Missense_Mutation	SNP	T	T	G	rs12271134		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	0	3	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498648	71498648	+	Silent	SNP	A	A	G	rs12277291	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
CHRDL2	25884	broad.mit.edu;bcgsc.ca	37	11	74429769	74429769	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
PLBD1	79887	hgsc.bcm.edu	37	12	14720583	14720583	+	Silent	SNP	T	T	C	rs7954623		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	0	3	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1045	419	626	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	0	1	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
IRS2	8660	hgsc.bcm.edu	37	13	110435728	110435728	+	Silent	SNP	C	C	G	rs75172981		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	6	3	3	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	2	2	0	0	0
HEATR5A	25938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31765136	31765136	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	17	14	3	0	0
NEMF	9147	broad.mit.edu	37	14	50295792	50295792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	18	18	0	0	0
LINC00238	440184	broad.mit.edu	37	14	66953610	66953610	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
ADAM21P1	145241	ucsc.edu	37	14	70714144	70714144	+	RNA	SNP	A	A	G	rs3751522		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
VSX2	338917	hgsc.bcm.edu	37	14	74706435	74706435	+	Silent	SNP	C	C	G	rs201395979		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
BCL11B	64919	hgsc.bcm.edu	37	14	99641967	99641967	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
CCDC85C	317762	hgsc.bcm.edu	37	14	100069940	100069940	+	Silent	SNP	C	C	T	rs189673537	by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	58	0	58	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105054934	105054934	+	Silent	SNP	A	A	G	rs12880814	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-	rs61397088	bycluster;alternate_allele	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	GACGGGCAG	GACGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
CSPG4	1464	broad.mit.edu	37	15	75977087	75977087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
CSPG4	1464	bcgsc.ca	37	15	75979782	75979782	+	Silent	SNP	G	G	T	rs8030131	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	5	5	0	0	0
ZNF710	374655	bcgsc.ca	37	15	90622936	90622936	+	Missense_Mutation	SNP	G	G	A	rs117711777	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	21	21	0	0	0
RCCD1	91433	hgsc.bcm.edu	37	15	91499986	91499986	+	Missense_Mutation	SNP	G	G	T	rs4932380		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	1	2	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	0	3	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
CDH15	1013	hgsc.bcm.edu	37	16	89258747	89258747	+	Missense_Mutation	SNP	A	A	C	rs75791347	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
SPIRE2	84501	hgsc.bcm.edu	37	16	89894998	89894998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
KDM6B	23135	broad.mit.edu;bcgsc.ca	37	17	7752668	7752668	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	45	44	1	0	0
MYH3	4621	bcgsc.ca	37	17	10541515	10541515	+	Missense_Mutation	SNP	C	C	T	rs2285477	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	2	0	2	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	0	1	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TBX21	30009	hgsc.bcm.edu	37	17	45810919	45810919	+	Missense_Mutation	SNP	C	C	G	rs2240017	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
SCN4A	6329	bcgsc.ca	37	17	62020348	62020348	+	Missense_Mutation	SNP	T	T	C	rs2058194	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	2	2	0	0	0
SLC16A5	9121	bcgsc.ca	37	17	73089852	73089852	+	Silent	SNP	T	T	C	rs4788863	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	3	0	0	0
NPTX1	4884	hgsc.bcm.edu	37	17	78450174	78450174	+	Missense_Mutation	SNP	A	A	T	rs201884300		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21703901	21703901	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23807117	23807117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	920642	920642	+	Missense_Mutation	SNP	T	T	A	rs350132		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	14	0	14	0	0
TICAM1	148022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4818321	4818321	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	12	10	2	0	0
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7506565	7506565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	20	17	3	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	7	7	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	rs16022	bycluster;byfrequency;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
RFX1	5989	hgsc.bcm.edu	37	19	14073588	14073588	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	8	4	4	0	0
CALR3	125972	bcgsc.ca	37	19	16591464	16591464	+	Silent	SNP	G	G	A	rs9305079	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
ZNF676	163223	ucsc.edu	37	19	22363448	22363448	+	Silent	SNP	A	A	T	rs200452805		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	41	0	40	1	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183352	33183352	+	Silent	SNP	G	G	C	rs61732600	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	0	1	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876464	38876464	+	Missense_Mutation	SNP	C	C	G	rs11083455		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
IRF3	3661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50163981	50163981	+	Missense_Mutation	SNP	C	C	T	rs148672096	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51607507	51607507	+	Missense_Mutation	SNP	G	G	A	rs17855403		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	4	0	4	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	2	1	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56002175	56002175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
GAREML	150946	hgsc.bcm.edu	37	2	26408064	26408064	+	Silent	SNP	T	T	C	rs4665833		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
FEZ2	9637	hgsc.bcm.edu	37	2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	rs1544655		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	29	0	29	0	0
KIAA1211L	343990	hgsc.bcm.edu	37	2	99439792	99439792	+	Missense_Mutation	SNP	G	G	C	rs3731660		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	8	8	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682235	106682235	+	Silent	SNP	C	C	G	rs4266035		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	8	8	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TANK	10010	broad.mit.edu	37	2	162036237	162036237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	121	121	0	0	0
SP5	389058	hgsc.bcm.edu	37	2	171573185	171573185	+	Silent	SNP	G	G	T	rs1134626	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
DYTN	391475	bcgsc.ca	37	2	207527840	207527840	+	Missense_Mutation	SNP	G	G	T	rs2115591	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LOC151174	0	broad.mit.edu	37	2	239134056	239134056	+	RNA	SNP	A	A	G	rs7572285	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	2	2	0	0	0
LOC151174	0	broad.mit.edu	37	2	239134063	239134063	+	RNA	SNP	G	G	T	rs7584376	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
LOC643387	0	broad.mit.edu	37	2	239140728	239140728	+	RNA	SNP	A	A	G	rs11689033	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LOC643387	0	broad.mit.edu	37	2	239142088	239142088	+	RNA	SNP	T	T	C	rs11692007	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LOC643387	0	broad.mit.edu;bcgsc.ca	37	2	239142179	239142179	+	RNA	SNP	G	G	A	rs11696058	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
FKBP1A	2280	bcgsc.ca	37	20	1350672	1350672	+	RNA	SNP	T	T	C	rs6041749	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	325	325	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	0	1	0	0
PLCB4	5332	broad.mit.edu;bcgsc.ca	37	20	9453937	9453937	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
WFDC5	149708	bcgsc.ca	37	20	43739119	43739119	+	Missense_Mutation	SNP	G	G	A	rs17422688	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TEKT4P2	100132288	broad.mit.edu	37	21	9907198	9907198	+	RNA	SNP	C	C	T	rs71263208		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TEKT4P2	100132288	broad.mit.edu	37	21	9914033	9914033	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36041978	36041978	+	Silent	SNP	A	A	G	rs7280973		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
TBX1	6899	hgsc.bcm.edu	37	22	19753444	19753444	+	Missense_Mutation	SNP	G	G	A	rs41298838	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LHFPL4	375323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9543923	9543923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
RASSF1	11186	hgsc.bcm.edu	37	3	50378176	50378176	+	Missense_Mutation	SNP	T	T	G	rs4688725	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
EFCC1	79825	hgsc.bcm.edu	37	3	128720487	128720487	+	Missense_Mutation	SNP	A	A	G	rs1871951	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
PRR23C	389152	hgsc.bcm.edu	37	3	138763343	138763343	+	Silent	SNP	T	T	G	rs6804898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
IDUA	3425	bcgsc.ca	37	4	994414	994414	+	Missense_Mutation	SNP	G	G	A	rs3755955	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	28	28	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	41	0	41	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	rs74929644		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	rs3828555	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LRIT3	345193	broad.mit.edu	37	4	110772859	110772859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
FAT4	79633	ucsc.edu	37	4	126240510	126240510	+	Silent	SNP	T	T	C	rs2940779	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
TRIO	7204	bcgsc.ca	37	5	14397238	14397238	+	Silent	SNP	T	T	C	rs30774	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	13	13	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109828	98109828	+	Silent	SNP	G	G	A	rs2547973	bycluster;byfrequency;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140174742	140174742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
PCDHA9	9752	bcgsc.ca	37	5	140228164	140228164	+	Missense_Mutation	SNP	C	C	A	rs251353	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu;mdanderson.org	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	17	17	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
CLPSL1	340204	bcgsc.ca	37	6	35748931	35748931	+	Missense_Mutation	SNP	T	T	C	rs34109614	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
PRIM2	5558	bcgsc.ca	37	6	57393160	57393160	+	RNA	SNP	G	G	A	rs76686926	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	4	4	0	0	0
ADGB	79747	broad.mit.edu;bcgsc.ca	37	6	147106841	147106841	+	Silent	SNP	A	A	G	rs259391	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772180	149772180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	1	2	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	9	6	3	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	rs929387	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	2	0	2	0	0
MUC17	140453	hgsc.bcm.edu	37	7	100677145	100677145	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
MUC17	140453	bcgsc.ca	37	7	100681211	100681211	+	Missense_Mutation	SNP	G	G	C	rs147094151	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
KCP	375616	broad.mit.edu	37	7	128526968	128526968	+	RNA	SNP	T	T	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
SSPO	23145	bcgsc.ca	37	7	149518961	149518961	+	Silent	SNP	T	T	C	rs1008335	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
SHH	6469	hgsc.bcm.edu	37	7	155596114	155596114	+	Missense_Mutation	SNP	C	C	T	rs104894047	bycluster;byfrequency;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	2	0	2	0	0
FAM160B2	64760	bcgsc.ca	37	8	21956108	21956108	+	Missense_Mutation	SNP	A	A	G	rs35497596	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	30	30	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	2	1	1	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145106939	145106940	+	Splice_Site	DEL	CC	CC	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	3	0	3	0	0
KIAA1432	57589	broad.mit.edu	37	9	5763487	5763487	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	11	11	0	0	0
FAM154A	158297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	18928282	18928282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
SPTLC1	10558	ucsc.edu;bcgsc.ca	37	9	94842321	94842321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	29	29	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	rs73571431		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
PRDM12	59335	hgsc.bcm.edu	37	9	133556930	133556930	+	Silent	SNP	C	C	T	rs12004652	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
QSOX2	169714	hgsc.bcm.edu	37	9	139137420	139137420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	6	3	3	0	0
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140414395	140414395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
COX1	5742	broad.mit.edu	37	MT	6576	6576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	55132	30050	25058	7	16
CSF2RA	1438	bcgsc.ca	37	X	1422868	1422868	+	Silent	SNP	G	G	A	rs28460440	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	1	1	0	0	0
TFDP3	51270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	132351801	132351801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
HLX	3142	hgsc.bcm.edu	37	1	221053600	221053601	+	In_Frame_Ins	INS	-	-	GCAGCAACAGCCGCC	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LINC00854	100874261	broad.mit.edu	37	17	41381913	41381914	+	RNA	INS	-	-	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	rs142924298		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
LOC100132832	0	broad.mit.edu	37	7	76682746	76682747	+	RNA	INS	-	-	T	rs139676054		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	0	0	0	0	0
