Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
HSD17B12	51144	broad.mit.edu	37	11	43876382	43876382	+	Silent	SNP	C	C	A			TCGA-CH-5743-01A-21D-1576-08	TCGA-CH-5743-10A-01D-1576-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fac8ffea-e7f8-41d3-889f-dd24cf5dcd64	d6bb9600-d340-45e4-aac0-08db7c5ea4e8	g.chr11:43876382C>A	ENST00000278353.4	+	10	921	c.802C>A	c.(802-804)Cga>Aga	p.R268R	RP11-613D13.5_ENST00000530450.1_RNA	NM_016142.2	NP_057226.1	Q53GQ0	DHB12_HUMAN	hydroxysteroid (17-beta) dehydrogenase 12	268					long-chain fatty-acyl-CoA biosynthetic process|steroid biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	estradiol 17-beta-dehydrogenase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity			endometrium(2)|large_intestine(4)|lung(4)	10						CCTGCAATCCCGAACCAATGG	0.438000													3	111					0.115264	0.139963	0.115264	1	0
ADAMTS7	11173	broad.mit.edu	37	15	79059182	79059182	+	Missense_Mutation	SNP	T	T	C	rs143974743		TCGA-CH-5743-01A-21D-1576-08	TCGA-CH-5743-10A-01D-1576-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fac8ffea-e7f8-41d3-889f-dd24cf5dcd64	d6bb9600-d340-45e4-aac0-08db7c5ea4e8	g.chr15:79059182T>C	ENST00000388820.4	-	19	3281	c.3071A>G	c.(3070-3072)cAc>cGc	p.H1024R	ADAMTS7_ENST00000566303.1_5'UTR	NM_014272.3	NP_055087.2	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1 motif, 7	1024					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.H1024R(2)		NS(1)|breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(2)|lung(23)|ovary(1)|prostate(8)|skin(9)	54						GGCCAGGTGGTGCGGGATGAA	0.682000													3	32					0	0	0.115264	0	0
FPGT-TNNI3K	0	broad.mit.edu	37	1	74808773	74808773	+	Missense_Mutation	SNP	G	G	A			TCGA-CH-5743-01A-21D-1576-08	TCGA-CH-5743-10A-01D-1576-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fac8ffea-e7f8-41d3-889f-dd24cf5dcd64	d6bb9600-d340-45e4-aac0-08db7c5ea4e8	g.chr1:74808773G>A	ENST00000370895.1	+	11	1180	c.1145G>A	c.(1144-1146)gGc>gAc	p.G382D	FPGT-TNNI3K_ENST00000370899.3_Missense_Mutation_p.G382D|RP11-439H8.4_ENST00000415549.2_RNA|FPGT-TNNI3K_ENST00000557284.1_Missense_Mutation_p.G382D|TNNI3K_ENST00000370891.2_Missense_Mutation_p.G382D|TNNI3K_ENST00000326637.3_Missense_Mutation_p.G281D			Q59H18	TNI3K_HUMAN		281						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding	p.G281D(1)									TGCTACAATGGCAAATTTGAA	0.348000													4	94					0	0	0.150653	0	0
FANCM	57697	broad.mit.edu	37	14	45605353	45605353	+	Missense_Mutation	SNP	C	C	A			TCGA-CH-5743-01A-21D-1576-08	TCGA-CH-5743-10A-01D-1576-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fac8ffea-e7f8-41d3-889f-dd24cf5dcd64	d6bb9600-d340-45e4-aac0-08db7c5ea4e8	g.chr14:45605353C>A	ENST00000267430.5	+	1	204	c.119C>A	c.(118-120)gCg>gAg	p.A40E	FANCM_ENST00000542564.2_Missense_Mutation_p.A40E|FANCM_ENST00000556036.1_Missense_Mutation_p.A40E	NM_020937.2	NP_065988.1	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	40					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding	p.A40E(1)		breast(4)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(18)|liver(2)|lung(31)|ovary(4)|prostate(2)|skin(1)|upper_aerodigestive_tract(6)|urinary_tract(1)	85						AGCTCCAAGGCGCCTTTGCCA	0.607000								Involved in tolerance or repair of DNA crosslinks	Fanconi Anemia				4	83					0.150653	0.170741	0.150653	1	0
CTD-2503O16.4	0	broad.mit.edu	37	5	74285946	74285946	+	RNA	DEL	T	T	-	rs138935859		TCGA-CH-5743-01A-21D-1576-08	TCGA-CH-5743-10A-01D-1576-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fac8ffea-e7f8-41d3-889f-dd24cf5dcd64	d6bb9600-d340-45e4-aac0-08db7c5ea4e8	g.chr5:74285946delT	ENST00000505200.1	-	0	212																											aattgctttcttttttttttt	0.383													4	4	---	---	---	---					
GOLGA2B	0	broad.mit.edu	37	12	100562920	100562921	+	RNA	INS	-	-	T	rs58822438		TCGA-CH-5743-01A-21D-1576-08	TCGA-CH-5743-10A-01D-1576-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fac8ffea-e7f8-41d3-889f-dd24cf5dcd64	d6bb9600-d340-45e4-aac0-08db7c5ea4e8	g.chr12:100562920_100562921insT	ENST00000397112.4	-	0	599					NR_036632.1															large_intestine(1)|lung(3)	4						GGTCTCATTTGTTTTttttttt	0.406													3	4	---	---	---	---					
