Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
HOXB13	10481	broad.mit.edu	37	17	46805666	46805666	+	Missense_Mutation	SNP	A	A	G			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr17:46805666A>G	ENST00000290295.7	-	1	874	c.290T>C	c.(289-291)cTg>cCg	p.L97P		NM_006361.5	NP_006352.2	Q92826	HXB13_HUMAN	homeobox B13	97					angiogenesis|epidermis development|response to wounding		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			endometrium(2)|kidney(2)|lung(6)|prostate(1)	11						ACAGGGTTTCAGCGAGCTCCG	0.672000													20	127					0	0	1	0	0
ROR2	4920	broad.mit.edu	37	9	94486363	94486363	+	Missense_Mutation	SNP	T	T	C			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr9:94486363T>C	ENST00000375708.3	-	9	2611	c.2413A>G	c.(2413-2415)Aag>Gag	p.K805E	ROR2_ENST00000375715.1_Intron|ROR2_ENST00000550066.1_5'UTR	NM_004560.3	NP_004551.2	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	805	Pro-rich.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			autonomic_ganglia(1)|breast(1)|central_nervous_system(5)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(12)|lung(31)|ovary(3)|prostate(6)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	71						ATCTGGCCCTTCATGGGGATG	0.662000													8	77					0	0	1	0	0
RYBP	23429	broad.mit.edu	37	3	72427735	72427735	+	Missense_Mutation	SNP	A	A	C			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr3:72427735A>C	ENST00000477973.1	-	4	752	c.753T>G	c.(751-753)tgT>tgG	p.C251W		NM_012234.5	NP_036366.3	Q8N488	RYBP_HUMAN	RING1 and YY1 binding protein	0					apoptosis|histone H2A monoubiquitination|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			prostate(1)|upper_aerodigestive_tract(1)	2		Prostate(10;0.00174)|Lung NSC(201;0.0659)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;0.000197)|Epithelial(33;0.00068)|LUSC - Lung squamous cell carcinoma(21;0.00228)|Lung(16;0.00677)|KIRC - Kidney renal clear cell carcinoma(39;0.198)|Kidney(39;0.232)		GACGTTGCCCACAGTTACTGC	0.512000													8	83					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2021549	2021549	+	Silent	SNP	C	C	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr8:2021549C>T	ENST00000262113.4	+	10	1230	c.1089C>T	c.(1087-1089)gtC>gtT	p.V363V	MYOM2_ENST00000523438.1_Intron	NM_003970.2	NP_003961.2	P54296	MYOM2_HUMAN	myomesin 2	363	Ig-like C2-type 2.		V -> I (in dbSNP:rs34316994).		muscle contraction	myosin filament	structural constituent of muscle			autonomic_ganglia(2)|breast(4)|central_nervous_system(3)|endometrium(7)|haematopoietic_and_lymphoid_tissue(11)|kidney(2)|large_intestine(17)|lung(39)|ovary(5)|prostate(1)|skin(10)|upper_aerodigestive_tract(3)	104		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GGGGCGGCGTCAGCGACCACA	0.652000													12	39					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr20:29628245G>A	ENST00000278882.3	+	6	627	c.247G>A	c.(247-249)Gcc>Acc	p.A83T	FRG1B_ENST00000358464.4_Missense_Mutation_p.A83T|FRG1B_ENST00000439954.2_Missense_Mutation_p.A88T														p.A83T(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GGCTTTGTTGGCCTCAAATAG	0.353000													5	184					0	0	1	0	0
SF3B5	83443	broad.mit.edu	37	6	144416413	144416413	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr6:144416413C>G	ENST00000367569.2	-	1	341	c.222G>C	c.(220-222)caG>caC	p.Q74H		NM_031287.2	NP_112577.1	Q9BWJ5	SF3B5_HUMAN	splicing factor 3b, subunit 5, 10kDa	74					nuclear mRNA splicing, via spliceosome	nucleoplasm|U12-type spliceosomal complex				lung(2)|prostate(1)	3				OV - Ovarian serous cystadenocarcinoma(155;1.68e-06)|GBM - Glioblastoma multiforme(68;0.0638)		GTCCACAAGGCTGAAGCATCT	0.572000													28	125					0	0	1	0	0
DEF8	54849	broad.mit.edu	37	16	90028248	90028248	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr16:90028248C>G	ENST00000563594.1	+	8	1780	c.783C>G	c.(781-783)caC>caG	p.H261Q	DEF8_ENST00000563795.1_Missense_Mutation_p.H261Q|DEF8_ENST00000567874.1_Missense_Mutation_p.H201Q|DEF8_ENST00000569453.1_Missense_Mutation_p.H261Q|DEF8_ENST00000570182.1_Missense_Mutation_p.H251Q|DEF8_ENST00000268676.7_Missense_Mutation_p.H322Q|DEF8_ENST00000563848.1_3'UTR	NM_001242818.1|NM_001242819.1	NP_001229747.1|NP_001229748.1	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 homolog (mouse)	322					intracellular signal transduction		zinc ion binding			central_nervous_system(1)|cervix(1)|large_intestine(1)|lung(8)|upper_aerodigestive_tract(1)	12		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		GCGTTGTACACAACTGGGACT	0.637000													3	56					0	0	1	0	0
FAM96B	51647	broad.mit.edu	37	16	66967968	66967968	+	Splice_Site	SNP	A	A	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr16:66967968A>T	ENST00000422424.2	-	2	179	c.142_splice	c.e2-1	p.D48_splice		NM_016062.3	NP_057146.1	Q9Y3D0	MIP18_HUMAN	family with sequence similarity 96, member B	48					chromosome segregation	cytoplasm|MMXD complex|nucleus	protein binding			kidney(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0862)|Epithelial(162;0.198)		AGCGAATCAGATGTGGGAAGT	0.582000													6	22					0	0	1	0	0
COL16A1	1307	broad.mit.edu	37	1	32120919	32120919	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr1:32120919G>A	ENST00000373672.3	-	67	4802	c.4286C>T	c.(4285-4287)tCc>tTc	p.S1429F	COL16A1_ENST00000461217.1_5'UTR|RP11-73M7.6_ENST00000587445.1_RNA|RP11-73M7.6_ENST00000585660.1_RNA|RP11-73M7.6_ENST00000585413.1_RNA|COL16A1_ENST00000271069.6_Missense_Mutation_p.S1429F|RP11-73M7.6_ENST00000593188.1_RNA|RP11-73M7.6_ENST00000591929.1_RNA|RP11-73M7.6_ENST00000591592.1_RNA|RP11-73M7.6_ENST00000589462.1_RNA	NM_001856.3	NP_001847.3	Q07092	COGA1_HUMAN	collagen, type XVI, alpha 1	1429	Triple-helical region 2 (COL2) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			breast(4)|central_nervous_system(2)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(7)|lung(15)|ovary(8)|prostate(4)	48		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CCTTACCATGGAGCCAGGCAC	0.652000													11	62					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20344654	20344654	+	Silent	SNP	C	C	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr14:20344654C>T	ENST00000298642.2	+	1	264	c.228C>T	c.(226-228)ttC>ttT	p.F76F		NM_001005501.1	NP_001005501.1	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K, member 2	76					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|endometrium(5)|kidney(2)|large_intestine(6)|lung(16)|ovary(2)|skin(9)|upper_aerodigestive_tract(2)	43	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTGCTTCTTTCGCCACCCCAA	0.418000													52	326					0	0	1	0	0
ATM	472	broad.mit.edu	37	11	108143527	108143527	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr11:108143527C>G	ENST00000278616.4	+	22	3617	c.3232C>G	c.(3232-3234)Ctt>Gtt	p.L1078V	ATM_ENST00000452508.2_Missense_Mutation_p.L1078V	NM_000051.3	NP_000042.3	Q13315	ATM_HUMAN	ataxia telangiectasia mutated	1078					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			NS(4)|breast(23)|central_nervous_system(11)|endometrium(10)|haematopoietic_and_lymphoid_tissue(227)|kidney(19)|large_intestine(53)|liver(5)|lung(62)|ovary(6)|pancreas(4)|prostate(13)|skin(4)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(3)	448		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TACACAATTTCTTGCTGACAA	0.388000			"""D, Mis, N, F, S"""		T-PLL	"""leukemia, lymphoma, medulloblastoma, glioma"""		Genes defective in diseases associated with sensitivity to DNA damaging agents	Ataxia Telangiectasia	TSP Lung(14;0.12)			6	56					0	0	1	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72498708	72498708	+	Silent	SNP	C	C	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr10:72498708C>T	ENST00000373208.1	+	11	1719	c.1719C>T	c.(1717-1719)ggC>ggT	p.G573G	ADAMTS14_ENST00000373207.1_Silent_p.G570G	NM_139155.2	NP_631894.2	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1 motif, 14	570	TSP type-1 1.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			NS(1)|autonomic_ganglia(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(15)|ovary(7)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	50						CATGTGGGGGCGGGGTGCGAT	0.652000													5	48					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56246844	56246844	+	Silent	SNP	C	C	T	rs78302914	byFrequency	TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr18:56246844C>T	ENST00000361673.3	-	4	1377	c.1164G>A	c.(1162-1164)tcG>tcA	p.S388S		NM_052947.3	NP_443179.3	Q86TB3	ALPK2_HUMAN	alpha-kinase 2	388							ATP binding|protein serine/threonine kinase activity			NS(1)|central_nervous_system(3)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(13)|lung(33)|ovary(7)|prostate(1)|skin(10)|upper_aerodigestive_tract(2)	84						CAGCGTCACCCGACACCCGAG	0.547000											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	69					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102452709	102452709	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr14:102452709G>A	ENST00000360184.4	+	8	2311	c.2147G>A	c.(2146-2148)cGc>cAc	p.R716H		NM_001376.4	NP_001367.2	Q14204	DYHC1_HUMAN	dynein, cytoplasmic 1, heavy chain 1	716	Interaction with DYNC1LI2 (By similarity).|Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			NS(1)|biliary_tract(1)|breast(4)|central_nervous_system(5)|cervix(1)|endometrium(21)|haematopoietic_and_lymphoid_tissue(3)|kidney(10)|large_intestine(28)|lung(60)|ovary(9)|pancreas(1)|prostate(6)|skin(7)|stomach(3)|upper_aerodigestive_tract(4)|urinary_tract(2)	166						GTCTCGGGGCGCATTTTCACC	0.502000													3	41					0	0	1	0	0
TLE4	7091	broad.mit.edu	37	9	82339965	82339965	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr9:82339965C>T	ENST00000376520.4	+	21	3152	c.2324C>T	c.(2323-2325)tCa>tTa	p.S775L	TLE4_ENST00000376534.4_Missense_Mutation_p.S380L|TLE4_ENST00000376537.4_Missense_Mutation_p.S775L|TLE4_ENST00000376544.3_Missense_Mutation_p.S674L|TLE4_ENST00000376552.2_Missense_Mutation_p.S743L|TLE4_ENST00000265284.6_Missense_Mutation_p.S718L			O60756	BCE1_HUMAN	transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)	0										breast(2)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(10)|lung(12)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	39						AAAGAATCCTCATCGGTGCTT	0.368000													7	63					0	0	1	0	0
KIAA1161	57462	broad.mit.edu	37	9	34372001	34372001	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr9:34372001C>G	ENST00000297625.7	-	2	1064	c.839G>C	c.(838-840)cGa>cCa	p.R280P		NM_020702.3	NP_065753.2	Q6NSJ0	K1161_HUMAN	KIAA1161	314					carbohydrate metabolic process	integral to membrane	hydrolase activity, hydrolyzing O-glycosyl compounds			breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(3)|lung(5)|ovary(1)	12			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.126)		AATGGGGTCTCGGAAGGCCTC	0.612000													10	61					0	0	1	0	0
TRMT13	54482	broad.mit.edu	37	1	100609646	100609646	+	Missense_Mutation	SNP	A	A	C			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr1:100609646A>C	ENST00000370141.2	+	9	770	c.764A>C	c.(763-765)gAa>gCa	p.E255A	TRMT13_ENST00000493651.1_3'UTR	NM_019083.2	NP_061956.2			tRNA methyltransferase 13 homolog (S. cerevisiae)																		GTGCTAAGAGAAGAAAAACTA	0.338000													3	36					0	0	1	0	0
KIF11	3832	broad.mit.edu	37	10	94413536	94413536	+	Missense_Mutation	SNP	G	G	C			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr10:94413536G>C	ENST00000260731.3	+	22	3244	c.3154G>C	c.(3154-3156)Gcc>Ccc	p.A1052P		NM_004523.3	NP_004514.2	P52732	KIF11_HUMAN	kinesin family member 11	1052					blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			breast(1)|endometrium(5)|kidney(2)|large_intestine(9)|lung(8)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29						ACCTCTGCGAGCCCAGATCAA	0.388000													6	48					0	0	1	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31798058	31798058	+	Missense_Mutation	SNP	T	T	C			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr21:31798058T>C	ENST00000390690.2	-	1	228	c.173A>G	c.(172-174)gAg>gGg	p.E58G		NM_181622.1	NP_853653.1	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	58	5 X 10 AA approximate repeats.					intermediate filament				endometrium(1)|large_intestine(1)|lung(10)|ovary(1)|upper_aerodigestive_tract(1)	14						CCAGCAGGTCTCCTGACAGCC	0.582000													4	100					0	0	1	0	0
WASH3P	0	broad.mit.edu	37	15	102515335	102515335	+	RNA	SNP	C	C	G			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr15:102515335C>G	ENST00000557932.1	+	0	1181																		p.L386V(3)		central_nervous_system(1)|endometrium(6)|kidney(11)|prostate(5)|stomach(1)|urinary_tract(1)	25						GGAGCGAAAGCTGGAGAAGAA	0.652000													3	29					0	0	1	0	0
RAB11FIP3	9727	broad.mit.edu	37	16	570797	570797	+	Silent	SNP	G	G	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr16:570797G>A	ENST00000262305.4	+	14	2617	c.2229G>A	c.(2227-2229)gtG>gtA	p.V743V	RAB11FIP3_ENST00000457159.1_Silent_p.V788V|RAB11FIP3_ENST00000450428.1_Silent_p.V447V	NM_014700.3	NP_055515.1	O75154	RFIP3_HUMAN	RAB11 family interacting protein 3 (class II)	743	FIP-RBD.				cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding			breast(1)|endometrium(2)|kidney(3)|lung(5)|upper_aerodigestive_tract(1)	12		Hepatocellular(16;0.0218)				GGATCATCGTGGCCATCATGG	0.577000													21	61					0	0	1	0	0
SLC24A5	283652	broad.mit.edu	37	15	48414122	48414122	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr15:48414122C>T	ENST00000482911.2	+	2	231	c.190C>T	c.(190-192)Cgc>Tgc	p.R64C	SLC24A5_ENST00000341459.3_Missense_Mutation_p.R64C|SLC24A5_ENST00000449382.2_Intron			Q71RS6	NCKX5_HUMAN	solute carrier family 24 (sodium/potassium/calcium exchanger), member 5	64					response to stimulus	integral to membrane|melanosome|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity	p.R64S(1)		cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(17)|skin(1)|upper_aerodigestive_tract(1)	27		all_lung(180;0.00217)		all cancers(107;3.29e-10)|GBM - Glioblastoma multiforme(94;7.32e-07)		GAGACAGGAGCGCAGAGATGG	0.413000													4	107					0	0	1	0	0
SIM2	6493	broad.mit.edu	37	21	38114059	38114059	+	Silent	SNP	C	C	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr21:38114059C>T	ENST00000290399.6	+	8	1505	c.892C>T	c.(892-894)Ctg>Ttg	p.L298L	SIM2_ENST00000430056.3_Silent_p.L298L	NM_005069.3	NP_005060.1	Q14190	SIM2_HUMAN	single-minded family bHLH transcription factor 2	298	PAC.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(1)|central_nervous_system(2)|kidney(2)|large_intestine(2)|lung(6)|prostate(1)|skin(2)	16						CTACCGGCTGCTGTCCAAGCG	0.627000													3	25					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	T	C			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr20:29628243T>C	ENST00000278882.3	+	6	625	c.245T>C	c.(244-246)tTg>tCg	p.L82S	FRG1B_ENST00000358464.4_Missense_Mutation_p.L82S|FRG1B_ENST00000439954.2_Missense_Mutation_p.L87S														p.L82S(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGGCTTTGTTGGCCTCAAAT	0.363000													5	185					0	0	1	0	0
HNRNPAB	3182	broad.mit.edu	37	5	177636394	177636394	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr5:177636394C>T	ENST00000358344.3	+	6	990	c.733C>T	c.(733-735)Cgt>Tgt	p.R245C	HNRNPAB_ENST00000506339.1_Missense_Mutation_p.R245C|HNRNPAB_ENST00000515193.1_Missense_Mutation_p.R245C|PHYKPL_ENST00000308158.5_Intron|HNRNPAB_ENST00000514633.1_Missense_Mutation_p.R245C|HNRNPAB_ENST00000504898.1_Missense_Mutation_p.R245C|PHYKPL_ENST00000481811.1_Intron|HNRNPAB_ENST00000355836.5_Missense_Mutation_p.R245C|HNRNPAB_ENST00000506259.1_Missense_Mutation_p.R245C	NM_031266.2	NP_112556.2	Q99729	ROAA_HUMAN	heterogeneous nuclear ribonucleoprotein A/B	245	Gly-rich.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding			large_intestine(4)|prostate(1)|urinary_tract(1)	6						CTCTGGGGGCCGTGGAAACCG	0.572000													9	89					0	0	1	0	0
LMO3	55885	broad.mit.edu	37	12	16704208	16704208	+	Missense_Mutation	SNP	G	G	A	rs145877643		TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr12:16704208G>A	ENST00000320122.6	-	4	908	c.386C>T	c.(385-387)aCg>aTg	p.T129M	LMO3_ENST00000535535.1_Missense_Mutation_p.T129M|LMO3_ENST00000447609.1_Missense_Mutation_p.T129M|LMO3_ENST00000534946.1_Missense_Mutation_p.T129M|LMO3_ENST00000354662.1_Missense_Mutation_p.T129M|LMO3_ENST00000541846.1_Missense_Mutation_p.T129M|LMO3_ENST00000541295.1_Missense_Mutation_p.T147M|LMO3_ENST00000540848.1_Missense_Mutation_p.T129M|LMO3_ENST00000441439.2_Missense_Mutation_p.T129M|LMO3_ENST00000540445.1_Missense_Mutation_p.T151M|LMO3_ENST00000261169.6_Missense_Mutation_p.T140M|LMO3_ENST00000537304.1_Missense_Mutation_p.T129M	NM_001243611.1	NP_001230540.1	Q8TAP4	LMO3_HUMAN	LIM domain only 3 (rhombotin-like 2)	129	LIM zinc-binding 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding			endometrium(2)|large_intestine(2)|skin(1)	5		Hepatocellular(102;0.244)				CTCGTAGTCCGTCTGGCAAAG	0.348000													5	74					0	0	1	0	0
NFASC	23114	broad.mit.edu	37	1	204951036	204951036	+	Silent	SNP	C	C	T			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr1:204951036C>T	ENST00000367172.4	+	21	2686	c.2358C>T	c.(2356-2358)taC>taT	p.Y786Y	NFASC_ENST00000367169.4_Silent_p.Y786Y|NFASC_ENST00000339876.6_Silent_p.Y786Y|NFASC_ENST00000404076.1_Silent_p.Y765Y|NFASC_ENST00000539706.1_Silent_p.Y782Y|NFASC_ENST00000360049.4_Silent_p.Y782Y|NFASC_ENST00000404907.1_Silent_p.Y782Y|NFASC_ENST00000338586.6_Silent_p.Y786Y|NFASC_ENST00000513543.1_Silent_p.Y782Y|NFASC_ENST00000401399.1_Silent_p.Y786Y|NFASC_ENST00000367170.4_Silent_p.Y786Y|NFASC_ENST00000367171.4_Silent_p.Y771Y|NFASC_ENST00000338515.6_Silent_p.Y786Y			O94856	NFASC_HUMAN	neurofascin	786	Fibronectin type-III 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			NS(1)|breast(4)|central_nervous_system(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(22)|liver(1)|lung(24)|ovary(3)|pancreas(1)|prostate(3)|skin(5)|upper_aerodigestive_tract(1)	81	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GCTCTCGCTACGTGGTGGGGC	0.602000													12	50					0	0	1	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959752	45959752	+	Silent	SNP	G	G	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr21:45959752G>A	ENST00000400375.1	-	1	326	c.282C>T	c.(280-282)ccC>ccT	p.P94P	TSPEAR_ENST00000397916.1_Intron|TSPEAR_ENST00000323084.4_Intron	NM_198691.2	NP_941964.2	P60331	KR101_HUMAN	keratin associated protein 10-1	94	24 X 5 AA repeats of C-C-X(3).					keratin filament				breast(1)|central_nervous_system(1)|endometrium(1)|lung(3)|prostate(4)|skin(1)	11						cctgctggcagggggaggagg	0.662000													4	178					0	0	1	0	0
ANKRD30BP2	0	broad.mit.edu	37	21	14414844	14414844	+	RNA	SNP	T	T	C	rs148060711	by1000genomes	TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr21:14414844T>C	ENST00000507941.1	+	0	95																											ACTGGGCCTGTGCCAATGGCC	0.433000													4	54					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91791146	91791146	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr14:91791146G>A	ENST00000389857.6	-	12	1405	c.1319C>T	c.(1318-1320)tCc>tTc	p.S440F		NM_001080414.3	NP_001073883.2	Q9P219	DAPLE_HUMAN	coiled-coil domain containing 88C	440					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			central_nervous_system(3)|endometrium(2)|kidney(3)|large_intestine(2)|lung(6)|ovary(6)|pancreas(1)|urinary_tract(1)	24		all_cancers(154;0.0468)				TGCGTTCTTGGACAGCTGCTC	0.612000													6	111					0	0	1	0	0
TBL2	26608	broad.mit.edu	37	7	72988435	72988435	+	Silent	SNP	T	T	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr7:72988435T>A	ENST00000305632.5	-	3	520	c.279A>T	c.(277-279)atA>atT	p.I93I	TBL2_ENST00000459913.1_5'UTR|TBL2_ENST00000432538.1_Silent_p.I57I|TBL2_ENST00000452475.1_Silent_p.I93I	NM_012453.2	NP_036585.1	Q9Y4P3	TBL2_HUMAN	transducin (beta)-like 2	93										endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(7)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	19		Lung NSC(55;0.0659)|all_lung(88;0.152)				CCATGCAAGATATGTTCCCGC	0.582000													11	56					0	0	1	0	0
C10orf12	26148	broad.mit.edu	37	10	98741523	98741523	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr10:98741523G>A	ENST00000286067.2	+	1	483	c.376G>A	c.(376-378)Gca>Aca	p.A126T		NM_015652.2	NP_056467.2	Q8N655	CJ012_HUMAN	chromosome 10 open reading frame 12	126										NS(1)|breast(2)|endometrium(3)|kidney(1)|large_intestine(8)|lung(19)|ovary(3)|prostate(2)|skin(2)|stomach(4)	45		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		ACACAAAGCGGCAAATGGACA	0.458000													4	77					0	0	1	0	0
HELB	92797	broad.mit.edu	37	12	66703846	66703846	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr12:66703846G>A	ENST00000247815.4	+	4	1197	c.1138G>A	c.(1138-1140)Gtc>Atc	p.V380I		NM_033647.3	NP_387467.2	Q8NG08	HELB_HUMAN	helicase (DNA) B	380					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(10)|lung(15)|pancreas(1)|prostate(3)|upper_aerodigestive_tract(1)	40			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		GCATTTATGTGTCGATGTCGA	0.423000													55	165					0	0	1	0	0
CRIP3	401262	broad.mit.edu	37	6	43275384	43275384	+	Silent	SNP	G	G	C			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr6:43275384G>C	ENST00000372569.3	-	4	298	c.294C>G	c.(292-294)ccC>ccG	p.P98P	ZNF318_ENST00000607252.1_5'UTR|CRIP3_ENST00000274990.4_Silent_p.P98P	NM_206922.2	NP_996805.2	Q6Q6R5	CRIP3_HUMAN	cysteine-rich protein 3	98						cytoplasm	zinc ion binding			endometrium(1)|kidney(1)|large_intestine(1)|lung(4)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	10			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			TCCTTGGCCTGGGAGGGCTGA	0.632000													13	68					0	0	1	0	0
LMOD2	442721	broad.mit.edu	37	7	123301995	123301997	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr7:123301995_123301997delGAG	ENST00000458573.2	+	2	512_514	c.355_357delGAG	c.(355-357)del	p.E124del	LMOD2_ENST00000456238.2_Intron	NM_207163.1	NP_997046.1	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	124	Glu-rich.					cytoskeleton	actin binding|tropomyosin binding										AGTGTATACAgaggaggaggagg	0.409													3	5	---	---	---	---					
KLHL9	55958	broad.mit.edu	37	9	21334407	21334408	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr9:21334407_21334408delAA	ENST00000359039.4	-	1	971_972	c.451_452delTT	c.(451-453)gfs	p.L151fs	KLHL9_ENST00000537938.1_Frame_Shift_Del_p.L83fs			Q9P2J3	KLHL9_HUMAN	kelch-like family member 9	151					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|midbody				endometrium(9)|large_intestine(7)|lung(10)|ovary(4)|skin(2)	32				Lung(24;8.52e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.118)		ACAGTTATCCAAAGAGACTCCT	0.337													9	44	---	---	---	---					
KIAA1462	57608	broad.mit.edu	37	10	30316501	30316503	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr10:30316501_30316503delCTG	ENST00000375377.1	-	3	2675_2677	c.2574_2576delCAG	c.(2572-2577)agt>ag	p.SS858del		NM_020848.2	NP_065899.1	Q9P266	K1462_HUMAN	KIAA1462	858	Ser-rich.									breast(3)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(17)|lung(23)|ovary(6)|prostate(3)|skin(5)|upper_aerodigestive_tract(1)	75						ACTCTCCTCActgctgctgctgc	0.571													8	109	---	---	---	---					
TPTE2P6	0	broad.mit.edu	37	13	25157747	25157748	+	RNA	INS	-	-	T	rs144668552	by1000genomes	TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr13:25157747_25157748insT	ENST00000453498.1	+	0	554																											AAAATGGGAGGTTTTTTTAGGG	0.411													5	7	---	---	---	---					
HERC2P2	0	broad.mit.edu	37	15	23285254	23285268	+	RNA	DEL	TCCCTTCCCTTCCCT	TCCCTTCCCTTCCCT	-			TCGA-J4-A67Q-01A-21D-A30E-08	TCGA-J4-A67Q-10A-01D-A30H-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	282f9df5-390b-4f67-a898-44746b337dc6	59ffc3d4-1659-40c8-89fe-d48475608509	g.chr15:23285254_23285268delTCCCTTCCCTTCCCT	ENST00000560464.1	-	0	5097																											CTTTCTTCTCtcccttcccttcccttcccttccct	0.474													7	3	---	---	---	---					
