Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MMEL1	79258	bcgsc.ca	37	1	2560882	2560882	+	Silent	SNP	G	G	A	rs4648658		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MMEL1-90	NM_033467	exon2	c.C42T	p.A14A	ACGGCCGGCGCTC	.	86	83	8	0	G|0.473;A|0.527	0	0	0	0	0
MMEL1	79258	bcgsc.ca	37	1	2560903	2560903	+	Silent	SNP	T	T	G	rs4648659		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MMEL1-90	NM_033467	exon2	c.A21C	p.P7P	CCCCACTGGGCCT	.	75	72	8	0	T|0.424;G|0.576	0	0	0	0	0
ESPN	83715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6488334	6488334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ESPN-514	NM_031475	exon2	c.G343C	p.G115R	CGCTTCGGCCACC	.	189	159	149	1	.	0	0	0	0	0
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7725013	7725013	+	Silent	SNP	G	G	A	rs149314642		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CAMTA1-520	NM_015215	exon9	c.G2406A	p.A802A	CACGGCGCTCTCA	.	135	37	116	0	G|1.000;A|0.000	0	0	0	0	0
PADI1	29943	hgsc.bcm.edu	37	1	17550187	17550187	+	Silent	SNP	C	C	T	rs143089550		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PADI1-68	NM_013358	exon3	c.C345T	p.V115V	TGGCGTCGGTAAG	.	59	3	85	0	C|1.000;T|0.000	0	0	0	0	0
AKR7L	246181	bcgsc.ca	37	1	19600386	19600386	+	RNA	SNP	C	C	T	rs112053480	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	AKR7L-90	.	.	.	.	GAGCCCCAGGCCG	.	415	12	260	2	C|0.896;T|0.104	0	0	0	0	0
HSPG2	3339	bcgsc.ca	37	1	22154845	22154845	+	Silent	SNP	A	A	G	rs2228347	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	HSPG2-141	NM_005529	exon89	c.T12312C	p.D4104D	GGAGCTATCATAG	.	101	5	137	0	T|0.194;G|0.194;C|0.056;A|0.556	6	6	0	0	0
RAD54L	8438	bcgsc.ca	37	1	46743900	46743900	+	Silent	SNP	C	C	T	rs1048771	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	RAD54L-229	NM_003579	exon18	c.C2190T	p.A730A	CACTGCCATCACC	.	145	6	161	0	C|0.877;T|0.123	6	6	0	0	0
FNDC7	163479	bcgsc.ca	37	1	109268441	109268441	+	Missense_Mutation	SNP	G	G	A	rs11582005	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FNDC7-92	NM_001144937	exon6	c.G926A	p.S309N	GGTCCAGTGTAGA	.	124	9	126	0	G|0.816;A|0.184	0	0	0	0	0
ECM1	1893	bcgsc.ca	37	1	150484987	150484987	+	Missense_Mutation	SNP	G	G	A	rs13294	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ECM1-92	NM_001202858	exon8	c.G1324A	p.G442S	GACATCGGTCGAG	.	202	6	203	2	A|0.317;C|0.005	3	3	0	0	0
C1orf68	100129271	broad.mit.edu;bcgsc.ca	37	1	152692588	152692588	+	Silent	SNP	A	A	G	rs944682	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	C1orf68-69	NM_001024679	exon1	c.A591G	p.S197S	AGGATCATCTGGC	.	79	5	104	0	A|0.651;G|0.349	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	10	10	0	0	C|0.242;T|0.758	0	0	0	0	0
JMJD4	65094	hgsc.bcm.edu	37	1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	rs7419238		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	JMJD4-226	NM_023007	exon1	c.C32T	p.A11V	TGCCCCGCCAGCG	.	3	3	0	0	G|0.002;A|0.998	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	IBA57-90	NM_001010867	exon2	c.C390A	p.S130R	TGACAGCTCGGTG	.	75	10	27	1	.	1	1	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	9	9	1	1	C|0.643;T|0.357	0	0	0	0	0
OR2M5	127059	bcgsc.ca	37	1	248309020	248309020	+	Missense_Mutation	SNP	G	G	A	rs139290187	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	OR2M5-71	NM_001004690	exon1	c.G571A	p.D191N	TGCAATGACACAT	.	196	12	220	2	G|0.999;A|0.001	0	0	0	0	0
IL15RA	3601	bcgsc.ca	37	10	6008172	6008172	+	Silent	SNP	C	C	T	rs2296139	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	IL15RA-90	NM_001256765	exon3	c.G477A	p.T159T	GCACTCCGTCAGG	.	183	6	224	1	C|0.832;T|0.168	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	110	4	161	1	.	1	1	0	0	0
WDFY4	57705	broad.mit.edu	37	10	49934020	49934020	+	Missense_Mutation	SNP	G	G	A	rs34731704	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	WDFY4-22	NM_020945	exon6	c.G686A	p.R229Q	GCCTTCGGGAGCA	.	90	5	119	0	G|0.993;A|0.007	0	0	0	0	0
PALD1	27143	bcgsc.ca	37	10	72293713	72293713	+	Silent	SNP	C	C	T	rs12764399	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_014431	exon8	c.C906T	p.H302H	TGCCCACGGGCCT	.	208	7	113	0	C|0.893;T|0.107	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	4	4	1	1	C|0.339;G|0.661	0	0	0	0	0
PNPLA2	57104	hgsc.bcm.edu	37	11	824624	824624	+	Missense_Mutation	SNP	A	A	G	rs140634178	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PNPLA2-90	NM_020376	exon10	c.A1277G	p.N426S	GCAACAACCTCTC	.	52	6	0	0	A|0.998;G|0.002	43	42	1	0	0
MUC2	4583	bcgsc.ca	37	11	1093094	1093094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MUC2-90	NM_002457	exon30	c.T4913G	p.V1638G	CTACGGTGACCCC	.	98	20	121	3	.	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	6	6	0	0	C|0.602;T|0.398	0	0	0	0	0
TRIM22	10346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5730589	5730589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TRIM22-90	NM_006074	exon8	c.C1208G	p.P403R	ATAGACCTCAATA	.	70	58	70	0	.	2	0	2	0	0
CD82	3732	bcgsc.ca	37	11	44636839	44636839	+	Silent	SNP	C	C	T	rs883752	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CD82-227	NM_002231	exon7	c.C354T	p.G118G	GATGGGCGGCATC	.	512	15	552	6	C|0.739;N|0.000	10	10	0	0	0
AHNAK	79026	hgsc.bcm.edu	37	11	62296271	62296271	+	Missense_Mutation	SNP	G	G	A	rs145366859		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	AHNAK-109	NM_001620	exon5	c.C5618T	p.A1873V	ACATCCGCATCCC	.	136	7	145	1	G|1.000;A|0.000	0	0	0	0	0
KRTAP5-7	440050	bcgsc.ca	37	11	71238705	71238705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KRTAP5-7-68	NM_001012503	exon1	c.G359A	p.C120Y	AGCCCTGCTGCTG	.	199	15	203	5	.	0	0	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FAM86C1-90	NM_152563	exon1	c.G89C	p.R30P	CCTTCCGCTGGCA	.	5	5	0	0	G|0.601;C|0.399	0	0	0	0	0
ARHGEF17	9828	hgsc.bcm.edu	37	11	73020058	73020058	+	Silent	SNP	C	C	T	rs12272360	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ARHGEF17-227	NM_014786	exon1	c.C375T	p.S125S	GCCCAGCGTCACC	.	6	6	0	0	C|0.906;T|0.094	0	0	0	0	0
WNT11	7481	hgsc.bcm.edu	37	11	75917419	75917419	+	Silent	SNP	C	C	G	rs138104027	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	WNT11-562	NM_004626	exon1	c.G33C	p.L11L	GAAGAGCAGCGCC	.	27	25	3	1	C|0.997;G|0.003	0	0	0	0	0
CTSC	1075	broad.mit.edu	37	11	88068252	88068252	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CTSC-90	NM_001814	exon3	c.173-2A>T	.	TGGTCCTAAAGAA	.	16	4	14	0	.	0	0	0	0	0
TMPRSS5	80975	bcgsc.ca	37	11	113570405	113570405	+	Silent	SNP	T	T	C	rs4936280	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TMPRSS5-1	NM_030770	exon3	c.A117G	p.A39A	GCACACTGCCTGA	.	298	12	321	0	T|0.231;C|0.769	0	0	0	0	0
OR10G4	390264	bcgsc.ca	37	11	123886865	123886865	+	Missense_Mutation	SNP	T	T	A	rs55884373		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	OR10G4-93	NM_001004462	exon1	c.T584A	p.V195E	CCAACGTGATGGT	.	466	16	590	5	.	0	0	0	0	0
TAS2R43	259289	hgsc.bcm.edu	37	12	11244723	11244723	+	Missense_Mutation	SNP	A	A	C	rs191086711	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TAS2R43-1	NM_176884	exon1	c.T106G	p.F36V	TCTTGAACCACTC	.	160	14	90	2	A|0.676;C|0.324	0	0	0	0	0
BCL2L14	79370	bcgsc.ca	37	12	12247852	12247852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	BCL2L14-227	NM_138723	exon5	c.G933T	p.Q311H	CCAGCAGCACGGT	.	69	4	39	0	.	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	373	15	242	11	G|0.998;A|0.002	344	227	117	0	0
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94641749	94641749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PLXNC1-92	NM_005761	exon13	c.C2459T	p.T820M	TGCGCACGAATGT	.	207	100	122	0	.	0	0	0	0	0
TMEM119	338773	hgsc.bcm.edu	37	12	108986112	108986112	+	Silent	SNP	G	G	C	rs10861953	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TMEM119-69	NM_181724	exon2	c.C48G	p.L16L	CCCCAGGAGCAGC	.	8	5	3	1	G|0.822;C|0.178	1	1	0	0	0
ATP2A2	488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110765566	110765566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ATP2A2-94	NM_001681	exon8	c.A839G	p.N280S	ACTTCAATGACCC	.	131	63	74	0	.	3	3	0	0	0
TPTE2	93492	bcgsc.ca	37	13	20000609	20000609	+	Missense_Mutation	SNP	C	C	T	rs141691551		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TPTE2-92	NM_199254	exon19	c.G1351A	p.G451S	GTGGACCGTCATA	.	106	10	114	2	C|0.998;T|0.002	0	0	0	0	0
CLN5	1203	hgsc.bcm.edu	37	13	77566320	77566320	+	Silent	SNP	C	C	G	rs138037471	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CLN5-91	NM_006493	exon1	c.C234G	p.A78A	CTGGGCCCTGGCG	.	6	6	0	0	C|0.985;G|0.015	1	0	1	0	0
IRS2	8660	bcgsc.ca	37	13	110435953	110435953	+	Silent	SNP	A	A	G	rs4773092	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	IRS2-1334	NM_003749	exon1	c.T2448C	p.C816C	CCCGCCACAGGTG	.	43	40	18	0	A|0.452;G|0.548	1	0	1	0	0
COL4A1	1282	broad.mit.edu	37	13	110861756	110861756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	COL4A1-654	NM_001845	exon11	c.G634A	p.G212S	GAGGGCCGGGAGG	.	63	3	52	1	.	6	6	0	0	0
UPF3A	65110	hgsc.bcm.edu	37	13	115047496	115047496	+	Missense_Mutation	SNP	G	G	C	rs76186578		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	UPF3A-91	NM_080687	exon2	c.G208C	p.V70L	CCGCAGGTGGTCA	.	20	2	1	0	.	1	1	0	0	0
APEX1	328	ucsc.edu;bcgsc.ca	37	14	20925154	20925154	+	Missense_Mutation	SNP	T	T	G	rs1130409	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	APEX1-661	NM_080648	exon5	c.T444G	p.D148E	AGGCGATGAGGAG	.	43	4	60	0	T|0.578;G|0.422	1	1	0	0	0
DTD2	112487	hgsc.bcm.edu	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_080664	exon1	c.C16T	p.R6W	GAATCCGGCTACC	.	171	9	17	0	.	4	2	2	0	0
ARID4A	5926	bcgsc.ca	37	14	58768333	58768333	+	Silent	SNP	C	C	T	rs45562837	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ARID4A-231	NM_002892	exon3	c.C42T	p.T14T	GGGAACCGATGTC	.	103	4	118	0	C|0.947;T|0.053	0	0	0	0	0
L3HYPDH	112849	hgsc.bcm.edu	37	14	59950676	59950676	+	Missense_Mutation	SNP	A	A	C	rs34741399	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_144581	exon1	c.T359G	p.L120R	GGCACAAGCCCGA	.	20	18	1	0	A|0.965;C|0.035	0	0	0	0	0
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61190755	61190755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	SIX4-154	NM_017420	exon1	c.C38T	p.A13V	TCCGCCGCACTTG	.	78	33	84	0	.	0	0	0	0	0
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71125518	alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	IRF2BPL-90	NM_024496	exon1	c.369_374del	p.123_125del	TGTTGTTGCTGCT	.	24	13	17	0	CTG|1.000;|0.000	0	0	0	0	0
TRIP11	9321	hgsc.bcm.edu	37	14	92472567	92472567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TRIP11-1400	NM_004239	exon11	c.G1753C	p.V585L	TTTCTACTTTGTC	.	42	3	36	0	.	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921115	24921115	+	Missense_Mutation	SNP	C	C	A	rs35022251	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_018958	exon1	c.C101A	p.P34Q	CCTCCCCGCCCGG	.	5	5	1	0	C|0.970;A|0.030	0	0	0	0	0
TRPM1	4308	broad.mit.edu	37	15	31359284	31359284	+	Silent	SNP	T	T	C	rs200934141	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TRPM1-94	NM_001252020	exon5	c.A651G	p.E217E	CAGGTCTTCCTTA	.	85	3	88	2	T|0.998;C|0.002	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	2	2	4	0	C|0.452;T|0.548	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	5	5	0	0	G|0.479;T|0.521	0	0	0	0	0
C15orf39	56905	bcgsc.ca	37	15	75499995	75499995	+	Missense_Mutation	SNP	T	T	G	rs28509789	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	C15orf39-90	NM_015492	exon2	c.T1606G	p.S536A	CCTGACTCAGCCC	.	136	7	143	1	T|0.662;G|0.338	22	22	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ARRDC4-90	NM_183376	exon1	c.A235G	p.T79A	GCCAGCACCGCGG	.	3	3	0	0	A|0.263;G|0.737	0	0	0	0	0
TM2D3	80213	hgsc.bcm.edu;broad.mit.edu	37	15	102192536	102192553	+	In_Frame_Del	DEL	CCCCTCAGCGGGAGCACC	CCCCTCAGCGGGAGCACC	-	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	CCCCTCAGCGGGAGCACC	CCCCTCAGCGGGAGCACC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TM2D3-91	NM_025141	exon1	c.12_29del	p.4_10del	CGGAGGCCCCTCA	.	53	18	20	0	.	0	0	0	0	0
MSLN	10232	hgsc.bcm.edu	37	16	815740	815740	+	Missense_Mutation	SNP	G	G	A	rs139851878		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MSLN-91	NM_005823	exon11	c.G845A	p.R282Q	CCTGGCGGCAGCC	.	245	144	3	0	G|1.000;A|0.000	0	0	0	0	0
TPSD1	23430	hgsc.bcm.edu	37	16	1306347	1306347	+	Silent	SNP	G	G	C	rs2272969		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TPSD1-90	NM_012217	exon1	c.G66C	p.P22P	GAGCCCGGCCTAC	.	202	11	17	0	.	0	0	0	0	0
PTX4	390667	hgsc.bcm.edu	37	16	1537601	1537601	+	Missense_Mutation	SNP	A	A	G	rs2667674	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PTX4-90	NM_001013658	exon2	c.T497C	p.L166P	CCCTCCAGAGCAG	.	21	8	1	1	A|0.928;G|0.072	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2152129	2152129	+	Silent	SNP	A	A	G	rs79276175		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PKD1-91	NM_000296	exon26	c.T9330C	p.P3110P	ACAGAAAGGGATG	.	105	91	8	2	A|0.500;G|0.500	12	0	12	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156021	2156021	+	Silent	SNP	A	A	G	rs28575767	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PKD1-91	NM_000296	exon20	c.T7708C	p.L2570L	TGGCCAAAGACCT	.	27	21	1	0	A|0.873;G|0.127	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	19	19	0	0	G|0.793;A|0.207	15	15	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2167874	2167874	+	Silent	SNP	G	G	A	rs35842		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PKD1-91	NM_000296	exon5	c.C1119T	p.L373L	GAGGTCGAGGCTC	.	36	17	2	0	A|1.000;|0.000	5	5	0	0	0
TBC1D24	57465	broad.mit.edu	37	16	2550269	2550269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TBC1D24-90	NM_001199107	exon7	c.C1303A	p.L435M	CCCCAGCTGCAGC	.	234	10	39	2	.	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304463	3304463	+	Missense_Mutation	SNP	C	C	T	rs224222	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MEFV-228	NM_000243	exon2	c.G605A	p.R202Q	CGCAGCCGGACCT	.	6	3	0	0	C|0.816;T|0.184	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	6	6	0	0	G|0.570;T|0.430	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0
MTSS1L	92154	broad.mit.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MTSS1L-68	NM_138383	exon15	c.G1623T	p.G541G	GGGCAGCCCAGCA	.	66	15	18	1	.	8	7	1	0	0
CLEC18B	497190	bcgsc.ca	37	16	74451970	74451970	+	Missense_Mutation	SNP	G	G	C	rs3869428		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CLEC18B-90	NM_001011880	exon3	c.C443G	p.T148S	TAGTGGGTGCAGG	.	738	57	260	12	.	0	0	0	0	0
HSDL1	83693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84164035	84164035	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	HSDL1-90	NM_031463	exon4	c.T222A	p.G74G	TGTTGCACCTAGG	.	83	42	51	1	.	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095573	90095573	+	Missense_Mutation	SNP	C	C	T	rs77382359		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	C16orf3-90	NM_001214	exon1	c.G178A	p.V60I	AGGCTACGGGGCA	.	149	18	46	0	C|0.500;T|0.500	0	0	0	0	0
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190943	39190943	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_030966	exon1	c.T131G	p.F44C	CCGCAGAAGCTGG	.	148	12	159	1	.	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274214	39274214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_033059	exon1	c.C354G	p.S118R	GCAGCAGCTGGAC	.	138	11	29	2	.	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG	.	120	7	27	1	.	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274426	39274426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_033059	exon1	c.A142T	p.S48C	AGCAGCTGGACAC	.	124	8	49	1	.	0	0	0	0	0
KRTAP4-6	81871	ucsc.edu	37	17	39296412	39296412	+	Missense_Mutation	SNP	T	T	A	rs200470462		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_030976	exon1	c.A328T	p.S110C	AGATGCTGCAGCT	.	221	47	56	3	.	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001190460	exon1	c.C453T	p.P151P	CCAGCCCACCTGC	.	143	27	93	0	C|0.500;T|0.500	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45214646	45214646	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CDC27-291	NM_001114091	exon14	c.A1803G	p.Q601Q	ATCAACTTGGATA	.	45	3	45	0	.	2	2	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45216115	45216115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CDC27-291	NM_001114091	exon13	c.A1712T	p.N571I	GGCGAATTTTTAT	.	19	4	24	1	.	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45216218	45216218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CDC27-291	NM_001114091	exon13	c.T1609C	p.Y537H	CTCTATAATTCTC	.	15	3	27	0	.	4	4	0	0	0
FAM20A	54757	hgsc.bcm.edu	37	17	66596769	66596769	+	Silent	SNP	C	C	T	rs2907388		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FAM20A-90	NM_017565	exon1	c.G39A	p.L13L	CAGCAGCAGCAGA	.	11	11	0	0	C|0.943;T|0.057	0	0	0	0	0
MAP2K6	5608	bcgsc.ca	37	17	67513003	67513003	+	Silent	SNP	C	C	A	rs1133228	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MAP2K6-1404	NM_002758	exon3	c.C91A	p.R31R	CCACCTCGAGATT	.	97	6	126	0	C|0.566;A|0.434	0	0	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288472	74288472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	QRICH2-94	NM_032134	exon4	c.A1838G	p.H613R	AAACCATGCTGAT	.	391	21	471	1	.	0	0	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288480	74288480	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	QRICH2-94	NM_032134	exon4	c.G1830A	p.V610V	CTGATCCACTCCA	.	398	22	473	1	.	0	0	0	0	0
ANKRD20A5P	440482	bcgsc.ca	37	18	14183680	14183680	+	RNA	SNP	G	G	A	rs75090388	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ANKRD20A5P-90	.	.	.	.	CCAGTGGCCATGT	.	186	18	146	3	G|0.300;A|0.700	0	0	0	0	0
SERPINB3	6317	bcgsc.ca	37	18	61323012	61323012	+	Missense_Mutation	SNP	C	C	G	rs3180227	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	SERPINB3-228	NM_006919	exon8	c.G1052C	p.G351A	CCGAATCCTACTA	.	225	7	246	2	C|0.611;G|0.389	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76752263	76752263	+	Missense_Mutation	SNP	C	C	A	rs35091814		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	SALL3-155	NM_171999	exon2	c.C272A	p.P91H	CGCCCCCCGAGGA	.	5	4	2	1	C|0.898;A|0.102	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	4	4	0	0	C|0.766;T|0.234	5	1	4	0	0
FAM108A1	81926	hgsc.bcm.edu	37	19	1881550	1881550	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FAM108A1-90	NM_031213	exon2	c.C16T	p.L6L	CACTCAGCGACAG	.	33	4	1	0	.	3	3	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	rs150715312	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ADAT3-154	NM_138422	exon2	c.A205G	p.K69E	CTGGACAAGCGCC	.	31	9	3	0	A|0.993;G|0.007	1	0	1	0	0
S1PR2	9294	hgsc.bcm.edu	37	19	10334797	10334797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	S1PR2-522	NM_004230	exon2	c.A785G	p.H262R	CAGGAGTGGACGG	.	52	3	17	0	.	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13319693	13319693	+	Silent	SNP	A	A	G	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	10	5	0	0	A|0.360;G|0.640	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409472	13409472	+	Missense_Mutation	SNP	T	T	A	rs16023	byfrequency;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CACNA1A-67	NM_001127221	exon19	c.A2978T	p.E993V	TCGCCCTCGCCCT	.	28	15	0	0	T|0.125;A|0.875	0	0	0	0	0
FCHO1	23149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17883278	17883278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FCHO1-90	NM_001161358	exon9	c.A607G	p.M203V	CAAGCCATGGAGG	.	360	166	236	0	.	0	0	0	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980857	18980857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GDF1-226	NM_001492	exon7	c.T260C	p.L87P	GGTTGCAGGGTGA	.	87	43	7	0	.	0	0	0	0	0
ZNF626	199777	hgsc.bcm.edu	37	19	20807353	20807353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ZNF626-515	NM_001076675	exon4	c.A1330G	p.R444G	TTCTCCTATGTGT	.	64	4	53	1	.	1	1	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	4	4	0	0	A|0.065;C|0.935	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183316	33183316	+	Silent	SNP	A	A	G	rs8109823		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	NUDT19-22	NM_001105570	exon1	c.A450G	p.P150P	AGGCCCAGCACCC	.	5	3	0	0	A|0.805;G|0.195	1	1	0	0	0
SIPA1L3	23094	hgsc.bcm.edu	37	19	38684392	38684392	+	Silent	SNP	C	C	T	rs143617253	by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	SIPA1L3-91	NM_015073	exon18	c.C4812T	p.A1604A	CCCTGCCGCCGGC	.	12	7	1	1	C|0.999;T|0.001	2	0	2	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	7	7	0	0	G|0.349;A|0.651	0	0	0	0	0
FCGBP	8857	hgsc.bcm.edu	37	19	40399430	40399430	+	Missense_Mutation	SNP	T	T	C	rs885723	bycluster;byfrequency;by2hit2allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FCGBP-98	NM_003890	exon13	c.A6265G	p.N2089D	GGAAATTGAATCG	.	11	8	3	2	T|0.083;C|0.917	1	0	1	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48184059	48184059	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GLTSCR1-48	NM_015711	exon6	c.C1632T	p.A544A	CTCCGCCGCTCCC	.	31	16	0	0	.	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	3	3	0	0	A|0.308;G|0.692	5	0	5	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	4	4	1	1	A|0.464;G|0.536	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KCNA7-90	NM_031886	exon1	c.T225C	p.G75G	CCGCCCACCGGAC	.	12	9	0	0	A|0.868;G|0.132	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	5	5	1	1	T|0.228;C|0.772	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	rs61751957		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	LRRC4B-205	NM_001080457	exon3	c.T1913C	p.V638A	CTGGCCACGGCGG	.	17	5	1	0	A|0.777;G|0.223	0	0	0	0	0
SHANK1	50944	hgsc.bcm.edu	37	19	51171188	51171188	+	Silent	SNP	G	G	A	rs750578		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	SHANK1-153	NM_016148	exon22	c.C4029T	p.T1343T	CTTGCCGGTCAGC	.	4	4	0	0	G|0.661;A|0.339	0	0	0	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	10	3	0	0	A|0.808;G|0.192	2	2	0	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001145402	exon9	c.A2337C	p.P779P	GCCCCATGGCTGC	.	76	5	38	0	.	0	0	0	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869902	55869902	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001145402	exon9	c.G2334A	p.Q778Q	CCATGGCTGCTCC	.	77	7	35	0	.	0	0	0	0	0
FAM110C	642273	hgsc.bcm.edu	37	2	45895	45895	+	Missense_Mutation	SNP	A	A	G	rs4241318		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FAM110C-68	NM_001077710	exon1	c.T491C	p.I164T	TCGGGGATTGCGG	.	3	3	0	0	A|0.011;G|0.989	0	0	0	0	0
TEKT4	150483	hgsc.bcm.edu	37	2	95539855	95539855	+	Splice_Site	SNP	T	T	G	rs201662522	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TEKT4-155	NM_144705	exon3	c.713+2T>G	.	GAGAGGTGGGCCC	.	114	6	72	1	T|0.970;G|0.030	6	0	6	0	0
TBC1D8	11138	bcgsc.ca	37	2	101627925	101627925	+	Missense_Mutation	SNP	C	C	T	rs1062062	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TBC1D8-25	NM_001102426	exon18	c.G2860A	p.G954R	GTTTCCCGAAAAC	.	106	6	122	0	C|0.941;T|0.059	0	0	0	0	0
GPR45	11250	hgsc.bcm.edu	37	2	105858993	105858993	+	Silent	SNP	C	C	G	rs140158310	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GPR45-154	NM_007227	exon1	c.C678G	p.A226A	GAACGCCGTGCGC	.	18	14	4	0	C|0.999;G|0.001	0	0	0	0	0
ESPNL	339768	hgsc.bcm.edu	37	2	239009336	239009336	+	Silent	SNP	G	G	A	rs61744770	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ESPNL-69	NM_194312	exon1	c.G276A	p.E92E	CCGCGAGGGGGGC	.	6	6	0	0	G|0.739;A|0.261	0	0	0	0	0
C2orf54	79919	hgsc.bcm.edu	37	2	241827800	241827800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	C2orf54-90	NM_001085437	exon4	c.G1160A	p.R387H	CCGATGCGCGGCG	.	8	7	0	0	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632707	29632707	+	RNA	SNP	G	G	A	rs6057187		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FRG1B-22	.	.	.	.	GCATGAGACGCTT	.	385	20	291	4	G|0.500;A|0.500	36	34	2	0	0
ID1	3397	hgsc.bcm.edu	37	20	30193224	30193224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ID1-651	NM_002165	exon1	c.G34A	p.A12T	ACCGCCGCCGCGG	.	20	11	0	0	.	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	4	4	0	0	C|0.769;T|0.231	0	0	0	0	0
KCNK15	60598	hgsc.bcm.edu	37	20	43378972	43378972	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KCNK15-90	NM_022358	exon2	c.C486T	p.A162A	GGTGGCCGGGCTG	.	119	89	4	1	.	9	6	3	0	0
KCNK15	60598	hgsc.bcm.edu	37	20	43379264	43379264	+	Missense_Mutation	SNP	A	A	C	rs6073538	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KCNK15-90	NM_022358	exon2	c.A778C	p.T260P	GCCCGCACCCCCA	.	7	7	0	0	A|0.418;C|0.582	1	0	1	0	0
KCNK15	60598	hgsc.bcm.edu	37	20	43379268	43379268	+	Missense_Mutation	SNP	C	C	A	rs13037900	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KCNK15-90	NM_022358	exon2	c.C782A	p.P261H	GCACCCCCAGCCC	.	7	5	0	0	C|0.901;A|0.099	0	0	0	0	0
ZNF831	128611	hgsc.bcm.edu	37	20	57767683	57767683	+	Missense_Mutation	SNP	C	C	A	rs183636700		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ZNF831-126	NM_178457	exon1	c.C1609A	p.P537T	CCCAGGCCCGGCC	.	41	22	1	1	C|0.997;A|0.003	0	0	0	0	0
RBBP8NL	140893	hgsc.bcm.edu	37	20	60990257	60990257	+	Silent	SNP	G	G	T	rs200432639		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_080833	exon9	c.C714A	p.P238P	ATTGGCGGGGCCT	.	24	15	0	0	G|0.989;T|0.011	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61436330	61436330	+	Missense_Mutation	SNP	A	A	G	rs201442562		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	OGFR-68	NM_007346	exon1	c.A119G	p.D40G	CAGGGGACGAGGA	.	8	4	0	0	.	5	4	1	0	0
CBR3	874	bcgsc.ca	37	21	37507769	37507769	+	Silent	SNP	C	C	T	rs881712	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CBR3-90	NM_001236	exon1	c.C279T	p.V93V	GGCCGTCGCCTTC	.	132	6	101	1	C|0.666;T|0.334	0	0	0	0	0
U2AF1	7307	hgsc.bcm.edu	37	21	44513243	44513243	+	Missense_Mutation	SNP	G	G	A	rs200044775		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	U2AF1-90	NM_001025203	exon8	c.C692T	p.S231L	TCTCTCGACCGCC	.	67	4	26	0	G|0.999;A|0.001	11	11	0	0	0
KRTAP10-4	386672	hgsc.bcm.edu	37	21	45994282	45994282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KRTAP10-4-90	NM_198687	exon1	c.C647T	p.P216L	GCCAGCCGGCTTG	.	268	18	58	0	.	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	.	.	.	.	GCCCCCCTGCTGC	.	62	14	19	0	.	0	0	0	0	0
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46020743	46020743	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_198689	exon2	c.A207G	p.P69P	CTGCCCAGTGACC	.	101	7	23	2	.	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46924426	46924443	+	In_Frame_Del	DEL	GGCCCCCCAGGCCCCCCA	GGCCCCCCAGGCCCCCCA	-	rs149296338	alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	GGCCCCCCAGGCCCCCCA	GGCCCCCCAGGCCCCCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	COL18A1-90	NM_030582	exon33	c.3364_3372del	p.1122_1124del	CCCCCCGGCCCCC	.	22	15	3	0	-|0.985;GGCCCCCCA|0.015	0	0	0	0	0
SEC14L6	730005	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	30921859	30921859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001193336	exon9	c.G725A	p.G242E	GTCCCCCCAAACT	.	127	102	138	0	.	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	3	3	0	0	A|0.354;G|0.646	0	0	0	0	0
NBEAL2	23218	broad.mit.edu	37	3	47036675	47036675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	NBEAL2-69	NM_015175	exon13	c.G1450T	p.A484S	TGCCCTGCCAGCC	.	78	6	12	0	.	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395586	49395586	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GPX1-68	.	.	.	.	ATTCTCGATAAGT	.	161	19	84	1	.	33	33	0	0	0
MST1	4485	hgsc.bcm.edu	37	3	49723379	49723379	+	Silent	SNP	T	T	C	rs4052580	bycluster;by2hit2allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MST1-278	NM_020998	exon10	c.A1164G	p.A388A	CTCCCCTGCGCCG	.	53	11	2	0	T|1.000;|0.000	7	4	3	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0
PLXND1	23129	bcgsc.ca	37	3	129293256	129293256	+	Missense_Mutation	SNP	T	T	C	rs2255703	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PLXND1-90	NM_015103	exon12	c.A2608G	p.M870V	TCCACATGCACAG	.	202	7	103	0	T|0.496;C|0.504	1	1	0	0	0
KCNMB3	27094	bcgsc.ca	37	3	178968634	178968634	+	Missense_Mutation	SNP	C	C	T	rs7645550	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KCNMB3-90	NM_014407	exon2	c.G157A	p.A53T	CTCCAGCACTGGA	.	166	7	201	2	C|0.649;T|0.351	2	2	0	0	0
MCCC1	56922	bcgsc.ca	37	3	182755209	182755209	+	Missense_Mutation	SNP	T	T	G	rs2270968	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MCCC1-92	NM_020166	exon13	c.A1391C	p.H464P	TTGGTGTGCAGTC	.	127	6	157	0	T|0.479;G|0.521	0	0	0	0	0
MAP6D1	79929	hgsc.bcm.edu	37	3	183543291	183543291	+	Silent	SNP	G	G	A	rs263006	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MAP6D1-90	NM_024871	exon1	c.C45T	p.R15R	GTTCCAGCGCCGC	.	4	4	0	0	G|0.521;A|0.479	0	0	0	0	0
EPHB3	2049	bcgsc.ca	37	3	184299167	184299167	+	Silent	SNP	T	T	C	rs1138510	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	EPHB3-1455	NM_004443	exon15	c.T2859C	p.S953S	TGCATCTTTTGAC	.	197	6	226	0	T|0.632;C|0.368	0	0	0	0	0
LRRC15	131578	bcgsc.ca	37	3	194081392	194081392	+	Silent	SNP	G	G	A	rs923936	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	LRRC15-71	NM_001135057	exon3	c.C399T	p.L133L	AGACTCGAGGCTG	.	149	5	182	1	G|0.832;A|0.168	0	0	0	0	0
MUC20	200958	hgsc.bcm.edu	37	3	195452155	195452155	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_152673	exon2	c.G681C	p.P227P	CACCCCGTCACGG	.	46	12	39	1	.	0	0	0	0	0
MFI2	4241	hgsc.bcm.edu	37	3	196754781	196754781	+	Missense_Mutation	SNP	A	A	G	rs149836828	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MFI2-90	NM_033316	exon2	c.T50C	p.V17A	CCGAGCACTGCGG	.	26	23	1	0	A|0.996;G|0.004	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	455	122	52	3	.	3	3	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388664	1388664	+	Missense_Mutation	SNP	T	T	C	rs199774688	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CRIPAK-90	NM_175918	exon1	c.T365C	p.M122T	TGCCGATGCGGAG	.	297	20	14	0	T|0.995;C|0.005	3	3	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388728	1388728	+	Silent	SNP	C	C	T	rs9760383	bycluster;byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CRIPAK-90	NM_175918	exon1	c.C429T	p.C143C	CCCATGCGGAGTG	.	91	27	1	0	C|0.991;T|0.009	38	3	35	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	66	21	0	0	C|0.960;G|0.040	9	6	3	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	497	100	27	1	A|0.994;C|0.006	38	2	36	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	58	9	8	1	C|1.000;|0.000	3	3	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389003	1389003	+	Missense_Mutation	SNP	G	G	C	rs148482314	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CRIPAK-90	NM_175918	exon1	c.G704C	p.R235P	CGTGCCGATGCGG	.	177	18	14	2	G|0.999;C|0.001	9	3	6	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495095	3495095	+	Missense_Mutation	SNP	G	G	A	rs9684786	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	DOK7-91	NM_173660	exon7	c.G1382A	p.G461D	CCCAGGGCAGCGA	.	12	12	1	1	G|0.834;A|0.166	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	91	7	5	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	68	8	0	0	.	0	0	0	0	0
MSX1	4487	hgsc.bcm.edu	37	4	4861745	4861745	+	Missense_Mutation	SNP	C	C	G	rs36059701		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MSX1-90	NM_002448	exon1	c.C119G	p.A40G	CCACGGCAGCCGC	.	13	4	1	0	C|0.867;G|0.133	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	6	3	2	0	G|0.440;A|0.560	0	0	0	0	0
TBC1D1	23216	hgsc.bcm.edu	37	4	38016372	38016372	+	Silent	SNP	G	G	A	rs61731587		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TBC1D1-91	NM_015173	exon3	c.G660A	p.A220A	TGCCGCGCCCACA	.	26	14	2	1	G|0.968;A|0.032	2	2	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	4	4	0	0	G|0.025;C|0.975	0	0	0	0	0
REST	5978	ucsc.edu	37	4	57797283	57797283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	REST-232	NM_001193508	exon4	c.G2259A	p.M753I	TCCCATGGAGGTG	.	73	16	130	9	.	0	0	0	0	0
YTHDC1	91746	broad.mit.edu	37	4	69202915	69202915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	YTHDC1-92	NM_001031732	exon4	c.A713T	p.E238V	TCTTCCTCCTCCT	.	74	4	98	0	.	7	7	0	0	0
MARCH1	55016	bcgsc.ca	37	4	164466824	164466824	+	Silent	SNP	C	C	T	rs13130399	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MARCH1-501	NM_001166373	exon7	c.G495A	p.A165A	GGTGATCGCGATT	.	245	9	252	0	C|0.612;T|0.388	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	3	3	0	0	T|0.352;C|0.648	0	0	0	0	0
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7766806	7766806	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ADCY2-97	NM_020546	exon17	c.C2101G	p.L701V	TTTTTCCTGAGTG	.	72	32	39	0	.	0	0	0	0	0
CDH12	1010	bcgsc.ca	37	5	21752050	21752050	+	Silent	SNP	A	A	G	rs6451992	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CDH12-92	NM_004061	exon15	c.T2181C	p.D727D	AGTTGGATCCACA	.	329	11	237	3	A|0.382;G|0.618	2	2	0	0	0
PRDM6	93166	hgsc.bcm.edu	37	5	122425899	122425899	+	Missense_Mutation	SNP	C	C	G	rs113582737		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001136239	exon2	c.C190G	p.P64A	GCTGAGCCTCCGC	.	8	5	0	0	C|0.500;G|0.500	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127626549	127626549	+	Missense_Mutation	SNP	T	T	G	rs183350360		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FBN2-146	NM_001999	exon50	c.A6320C	p.N2107T	TCAAAATTTGTGA	.	137	66	79	0	T|0.999;G|0.000	1	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476411	140476411	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PCDHB2-96	NM_018936	exon1	c.A2037C	p.A679A	GGCGGCACCGGCC	.	193	7	12	0	.	0	0	0	0	0
PCDHB6	56130	hgsc.bcm.edu	37	5	140531592	140531592	+	Missense_Mutation	SNP	C	C	T	rs55834559	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PCDHB6-91	NM_018939	exon1	c.C1754T	p.T585I	TGGTGACCAAGGT	.	57	23	0	0	C|0.966;T|0.034	7	7	0	0	0
PCDHB8	56128	hgsc.bcm.edu	37	5	140559532	140559532	+	Missense_Mutation	SNP	G	G	C	rs2740582	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PCDHB8-131	NM_019120	exon1	c.G1917C	p.Q639H	CAAGCAGAGGCTG	.	101	39	0	0	G|0.808;C|0.192	7	0	7	0	0
PCDHB16	57717	hgsc.bcm.edu	37	5	140564048	140564048	+	Missense_Mutation	SNP	G	G	C	rs76350555		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PCDHB16-92	NM_020957	exon1	c.G1914C	p.Q638H	CAAGCAGAGGCTG	.	94	49	2	1	.	3	1	2	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	32	14	1	0	.	6	6	0	0	0
PCDHB11	56125	hgsc.bcm.edu	37	5	140581220	140581220	+	Missense_Mutation	SNP	C	C	A	rs799833		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PCDHB11-96	NM_018931	exon1	c.C1873A	p.R625S	GAGGTGCGCACCG	.	54	16	1	0	C|0.807;A|0.193	3	3	0	0	0
PCDHB12	56124	hgsc.bcm.edu	37	5	140590211	140590211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PCDHB12-93	NM_018932	exon1	c.T1732C	p.W578R	GTGCCCTGGGCGG	.	75	8	0	0	.	11	0	11	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838632	145838632	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TCERG1-92	NM_006706	exon4	c.G624A	p.Q208Q	GGCTCAGGCTCAG	.	90	7	3	1	.	0	0	0	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838656	145838656	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TCERG1-92	NM_006706	exon4	c.G648A	p.Q216Q	GGCCCAGGCCCAG	.	85	17	4	0	.	0	0	0	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838662	145838662	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TCERG1-92	NM_006706	exon4	c.G654A	p.Q218Q	GGCCCAGGCCCAG	.	90	13	5	0	.	0	0	0	0	0
LSM11	134353	hgsc.bcm.edu	37	5	157170986	157170986	+	Silent	SNP	G	G	A	rs2279771		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	LSM11-90	NM_173491	exon1	c.G228A	p.R76R	CGGGCGGGCTCGG	.	6	6	0	0	T|0.167;C|0.832	0	0	0	0	0
GABRG2	2566	hgsc.bcm.edu	37	5	161529571	161529571	+	Missense_Mutation	SNP	A	A	G	rs211035	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GABRG2-95	NM_198903	exon6	c.A643G	p.I215V	CGTTCTATTGCCC	.	4	4	0	0	A|0.193;G|0.807	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	5	5	0	0	G|0.585;C|0.415	0	0	0	0	0
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180036020	180036020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	FLT4-1490	NM_182925	exon29	c.T3841C	p.S1281P	CCTCCGAGGCCAG	.	203	80	113	1	.	2	2	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	2	2	0	0	A|0.006;G|0.994	0	0	0	0	0
BTN1A1	696	bcgsc.ca	37	6	26501897	26501897	+	Silent	SNP	T	T	C	rs1321479	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	BTN1A1-92	NM_001732	exon2	c.T159C	p.S53S	CCTGTCTCCGAAC	.	169	7	58	0	T|0.485;C|0.515	0	0	0	0	0
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32629194	32629194	+	Silent	SNP	G	G	A	rs9273650	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	HLA-DQB1-22	NM_002123	exon4	c.C702T	p.G234G	TCCAACGCCACTC	.	6	2	8	1	A|0.225;G|0.775	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	7	7	0	0	T|0.441;C|0.559	0	0	0	0	0
AARS2	57505	bcgsc.ca	37	6	44270870	44270870	+	Missense_Mutation	SNP	C	C	T	rs35623954	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	AARS2-91	NM_020745	exon16	c.G2188A	p.V730M	GGGCCACGGGCAC	.	145	7	130	0	C|0.975;T|0.025	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	3	3	0	0	T|0.089;G|0.911	0	0	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	4	4	0	0	G|0.796;C|0.204	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	8	8	2	0	T|0.654;G|0.346	0	0	0	0	0
CYP2W1	54905	hgsc.bcm.edu	37	7	1028376	1028376	+	Missense_Mutation	SNP	C	C	T	rs149976257	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	CYP2W1-90	NM_017781	exon9	c.C1391T	p.P464L	TCAGTCCGGCCTC	.	51	25	2	0	C|0.996;T|0.004	2	0	2	0	0
AMZ1	155185	hgsc.bcm.edu	37	7	2742411	2742411	+	Silent	SNP	A	A	G	rs61738701	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	AMZ1-90	NM_133463	exon3	c.A360G	p.T120T	CTGCACAGAGGCC	.	88	41	8	0	A|0.922;G|0.078	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5352665	5352665	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TNRC18-46	NM_001080495	exon27	c.A7857C	p.S2619S	GGAGGATGAGGAG	.	10	6	5	2	.	7	0	5	2	0
TNRC18	84629	hgsc.bcm.edu	37	7	5352791	5352796	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	GCTGCT	GCTGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TNRC18-46	NM_001080495	exon27	c.7726_7731del	p.2576_2577del	CGAGCCGCTGCTG	.	61	21	12	0	.	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	rs61732616	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	USP42-659	NM_032172	exon15	c.T2279G	p.L760R	AATCCCTGGAGGA	.	29	29	2	1	T|0.731;G|0.269	0	0	0	0	0
NPVF	64111	hgsc.bcm.edu	37	7	25266573	25266573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	NPVF-91	NM_022150	exon2	c.A211G	p.I71V	TCTTAATAACATT	.	187	6	139	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30643172	30643172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GARS-91	NM_002047	exon6	c.A719G	p.E240G	AAATGGAAAGTGT	.	95	41	56	0	.	17	9	8	0	0
EPDR1	54749	hgsc.bcm.edu	37	7	37960577	37960577	+	Silent	SNP	C	C	A	rs147877097		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	EPDR1-91	NM_001242946	exon1	c.C36A	p.G12G	CCCGGGCGCCCTG	.	5	5	1	0	C|0.995;A|0.005	3	1	2	0	0
NACAD	23148	hgsc.bcm.edu	37	7	45123906	45123906	+	Missense_Mutation	SNP	T	T	G	rs61740887	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001146334	exon2	c.A1873C	p.I625L	ACACAATCGTGGC	.	14	4	8	2	T|0.778;G|0.222	0	0	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	6	4	0	0	G|0.760;A|0.240	0	0	0	0	0
GATS	352954	bcgsc.ca	37	7	99821685	99821685	+	Silent	SNP	C	C	T	rs863450	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GATS-90	NM_178831	exon3	c.G231A	p.S77S	GTGCTCCGAGGAG	.	528	13	307	4	C|0.319;T|0.681	4	4	0	0	0
AKR1D1	6718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	137761321	137761321	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	AKR1D1-91	NM_001190907	exon1	c.C57A	p.P19P	CATTCCCATCATC	.	241	16	146	0	.	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu	37	7	149462381	149462381	+	Missense_Mutation	SNP	C	C	T	rs112589121		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ZNF467-90	NM_207336	exon5	c.G1210A	p.A404T	CGCTGGCCAGGGG	.	13	7	1	0	C|0.942;T|0.058	1	0	1	0	0
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	rs79377053		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001100592	exon1	c.G88A	p.A30T	GGACCCGCGCACC	.	21	12	0	0	G|0.870;A|0.130	5	1	4	0	0
GBX1	2636	hgsc.bcm.edu	37	7	150864240	150864240	+	Silent	SNP	G	G	C	rs13241978	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	GBX1-68	NM_001098834	exon1	c.C396G	p.A132A	TCGGGCGGCAGTG	.	13	6	1	0	G|0.699;C|0.301	0	0	0	0	0
DPP6	1804	hgsc.bcm.edu	37	7	153750019	153750019	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	DPP6-652	NM_130797	exon1	c.C114T	p.G38G	CGGCGGCGCAGGA	.	9	5	1	1	.	0	0	0	0	0
USP17L2	377630	hgsc.bcm.edu	37	8	11996252	11996252	+	Silent	SNP	G	G	A	rs71237667	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	USP17L2-435	NM_201402	exon1	c.C18T	p.L6L	CAAGTAGAGTGAG	.	3	3	4	1	G|0.957;A|0.043	0	0	0	0	0
FAM86B1	85002	hgsc.bcm.edu	37	8	12043032	12043032	+	Missense_Mutation	SNP	C	C	A	rs9774712	bycluster;alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001083537	exon6	c.G643T	p.V215L	ACAGCACGTCTAC	.	13	2	9	0	.	1	1	0	0	0
PROSC	11212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37632983	37632983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PROSC-90	NM_007198	exon6	c.C581A	p.P194Q	AAGGACCAAATCC	.	109	92	123	0	.	1	0	1	0	0
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72123405	72123405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	EYA1-652	NM_000503	exon17	c.C1684G	p.Q562E	CTCCTTGTTCTTC	.	113	88	166	0	.	0	0	0	0	0
MTDH	92140	hgsc.bcm.edu	37	8	98712028	98712028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MTDH-91	NM_178812	exon7	c.G1095T	p.Q365H	TTATCAGTGGGAT	.	68	4	81	0	.	2	2	0	0	0
POU5F1B	5462	broad.mit.edu;bcgsc.ca	37	8	128428751	128428751	+	Missense_Mutation	SNP	A	A	G	rs71520669	bycluster;byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001159542	exon1	c.A640G	p.N214D	GACAACAATGAAA	.	79	7	94	1	A|0.856;G|0.144	1	1	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	3	3	0	0	A|0.118;G|0.882	0	0	0	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649625	144649625	+	Silent	SNP	T	T	C	rs10097556		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001100878	exon14	c.A1944G	p.R648R	CTGCAGTCGCCCT	.	4	4	0	0	T|0.058;C|0.942	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940378	144940378	+	Silent	SNP	G	G	A	rs62641757		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	EPPK1-25	NM_031308	exon1	c.C7044T	p.V2348V	GTCGATGACGCCG	.	143	27	14	0	G|0.016;A|0.984	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990528	144990528	+	Silent	SNP	A	A	G	rs7014582	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	7	7	0	0	A|0.536;G|0.464	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	6	5	1	1	A|0.738;G|0.262	2	0	2	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	4	4	0	0	C|0.731;T|0.269	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	2	2	0	0	C|0.707;T|0.293	1	0	1	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	6	6	0	0	G|0.992;C|0.006	0	0	0	0	0
DMRT1	1761	hgsc.bcm.edu	37	9	841971	841971	+	Missense_Mutation	SNP	T	T	A	rs3739583	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	DMRT1-515	NM_021951	exon1	c.T133A	p.S45T	AGCGGCTCGAGCG	.	5	5	0	0	T|0.317;A|0.683	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	11	11	2	0	G|0.572;C|0.428	0	0	0	0	0
TOPORS	10210	bcgsc.ca	37	9	32542204	32542204	+	Silent	SNP	A	A	G	rs10971019	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	TOPORS-230	NM_005802	exon3	c.T2319C	p.S773S	GTTACTAGACAGG	.	102	5	127	0	A|0.836;G|0.164	6	5	1	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	BAG1-228	NM_004323	exon1	c.G133C	p.G45R	GACGCCCAGAGGG	.	7	7	0	0	C|0.976;G|0.024	5	0	5	0	0
PRSS3	5646	bcgsc.ca	37	9	33797991	33797991	+	Missense_Mutation	SNP	G	G	A	rs146966861	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PRSS3-90	NM_007343	exon3	c.G536A	p.R179H	ATGCCCGCGTGTC	.	272	21	338	9	G|1.000;A|0.000	0	0	0	0	0
FOXD4L5	653427	hgsc.bcm.edu	37	9	70177822	70177822	+	Silent	SNP	T	T	C	rs2921291		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001126334	exon1	c.A162G	p.S54S	CTGGAGTGACTGC	.	66	60	3	0	C|1.000;|0.000	0	0	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	88968081	88968081	+	Missense_Mutation	SNP	G	G	A	rs142251867		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	ZCCHC6-92	NM_024617	exon2	c.C34T	p.R12C	TAGTGCGCTTCAC	.	17	11	18	0	G|1.000;A|0.000	0	0	0	0	0
PHF2	5253	hgsc.bcm.edu	37	9	96439007	96439007	+	Silent	SNP	G	G	T	rs10992855		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	PHF2-91	NM_005392	exon21	c.G2964T	p.P988P	CACCCCGGCCTCC	.	66	4	30	0	G|0.630;T|0.370	2	2	0	0	0
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107331706	107331706	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	OR13C8-70	NM_001004483	exon1	c.G258T	p.L86L	CTTTCTGGCAGTA	.	97	31	108	0	.	0	0	0	0	0
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133914550	133914550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	LAMC3-93	NM_006059	exon6	c.A1198G	p.T400A	ACAGGCACCTGCG	.	80	66	104	0	.	0	0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139397707	139397707	+	Silent	SNP	G	G	A	rs10521	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	NOTCH1-5459	NM_017617	exon27	c.C5094T	p.D1698D	GGCCACGTCGGTG	.	91	5	102	2	G|0.465;A|0.535	0	0	0	0	0
GAGE2A	729447	hgsc.bcm.edu	37	X	49208323	49208323	+	Missense_Mutation	SNP	G	G	C	rs2142399	by2hit2allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001127212	exon2	c.G52C	p.E18Q	TACGTAGAGCCTC	.	38	2	24	0	.	0	0	0	0	0
RGAG1	57529	bcgsc.ca	37	X	109697443	109697443	+	Missense_Mutation	SNP	T	T	C	rs41306249	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	RGAG1-132	NM_020769	exon3	c.T3598C	p.W1200R	GAGAGGTGGTTCA	.	159	6	111	0	T|0.977;C|0.023	0	0	0	0	0
SOWAHD	347454	hgsc.bcm.edu	37	X	118892888	118892888	+	Silent	SNP	G	G	C	rs2782222	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_001105576	exon1	c.G258C	p.A86A	TCCTGCGGGGTGG	.	2	2	0	0	G|0.401;C|0.599	0	0	0	0	0
MAGEC1	9947	hgsc.bcm.edu	37	X	140994252	140994252	+	Missense_Mutation	SNP	C	C	A	rs145693793	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	MAGEC1-133	NM_005462	exon4	c.C1062A	p.F354L	TATTTTCCAGAGT	.	75	5	30	1	C|0.999;A|0.001	0	0	0	0	0
IRAK1	3654	bcgsc.ca	37	X	153284483	153284483	+	Silent	SNP	G	G	A	rs1059701	byfrequency	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	IRAK1-1074	NM_001569	exon4	c.C483T	p.V161V	GCTTGGGACCAGG	.	67	5	40	0	0|0.004;T|0.127;G|0.320;C|0.137;A|0.413	2	2	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_013230	exon1	c.T27C	p.L9L	CAGCCCAAGCCTG	.	27	14	38	1	.	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCTGCTGCT	rs3831942	alternate_allele	TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KCNN3-91	NM_001204087	exon1	c.242_243insAGCAGCAGCAGCAGCAGC	p.P81delinsQQQQQQP	TGCGGTGGCTGCT	.	47	0	11	0	.	0	0	0	0	0
KRTAP4-5	85289	bcgsc.ca	37	17	39305775	39305776	+	In_Frame_Ins	INS	-	-	GGCAGCAGCTGGGGC	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KRTAP4-5-90	NM_033188	exon1	c.245_246insGCCCCAGCTGCTGCC	p.Q82delinsRPSCCQ	GTGGTCTGGCAGC	.	82	43	21	0	.	0	0	0	0	0
AGAP3	116988	broad.mit.edu	37	7	150831565	150831566	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	AGAP3-92	NM_031946	exon11	c.1405_1406insG	p.R469fs	CTGCCCCGAGCCA	.	361	8	97	0	.	0	0	0	0	0
KRTAP10-6	386674	hgsc.bcm.edu	37	21	46011708	46011709	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	KRTAP10-6-90	NM_198688	exon1	c.C657T	p.T220A	GGAGGTGCAGCAA	.	336	0	97	0	.	0	0	0	0	0
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46020747	46020748	+	Missense_Mutation	DNP	AC	AC	GT	novel		TCGA-OR-A5K3-01A-11D-A29I-10	TCGA-OR-A5K3-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0dfae10a-d49c-4d1f-8923-63483f0a892b	79ef4688-1bab-492a-ae7f-64b94bff5c94	.	.	NM_198689	exon2	c.C212T	p.T76V	CAGTGACCTGTGA	.	108	0	24	0	.	0	0	0	0	0
