Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	11561526	11561526	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PTCHD2-209	NM_020780	exon2	c.G477A	p.L159L	GCAGCTGCATCTC	.	22	8	38	0	.	0	0	0	0	0
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12309384	12309384	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	VPS13D-95	NM_015378	exon6	c.T552G	p.A184A	AAATGCTGTGAAT	.	127	48	65	0	.	0	0	0	0	0
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33820015	33820015	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PHC2-227	NM_198040	exon8	c.G1542A	p.P514P	TGGGGACGGCTGG	.	123	55	81	0	.	1	1	0	0	0
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152785074	152785097	+	In_Frame_Del	DEL	GCTGTGGCTCCAGCTCTGGGGGAA	GCTGTGGCTCCAGCTCTGGGGGAA	-	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	GCTGTGGCTCCAGCTCTGGGGGAA	GCTGTGGCTCCAGCTCTGGGGGAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LCE1B-68	NM_178349	exon1	c.152_175del	p.51_59del	GAGGCTGCTGTGG	.	105	22	105	0	.	0	0	0	0	0
LCE1A	353131	hgsc.bcm.edu	37	1	152800122	152800122	+	Silent	SNP	C	C	T	rs148143373	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LCE1A-70	NM_178348	exon1	c.C174T	p.G58G	TGGGGGCGGCTGC	.	73	8	73	0	C|1.000;T|0.000	0	0	0	0	0
LCE1A	353131	bcgsc.ca	37	1	152800131	152800131	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LCE1A-70	NM_178348	exon1	c.C183T	p.S61S	CTGCAGCTCTGGG	.	73	11	78	1	.	0	0	0	0	0
SLC9C2	284525	broad.mit.edu;bcgsc.ca	37	1	173499091	173499091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	.	NM_178527	exon18	c.G2266T	p.A756S	GTTTGGCATCTTC	.	75	6	61	0	.	0	0	0	0	0
DNAH14	127602	broad.mit.edu	37	1	225569241	225569241	+	Missense_Mutation	SNP	T	T	G	rs950210	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DNAH14-23	NM_001373	exon79	c.T12731G	p.F4244C	AAATATTTAACTC	.	159	5	109	0	T|0.433;G|0.566	1	1	0	0	0
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88419681	88419681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	OPN4-69	NM_001030015	exon7	c.G863A	p.G288D	GCAAGGGCAATGG	.	174	12	163	0	.	0	0	0	0	0
DNAJC4	3338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64001585	64001585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DNAJC4-226	NM_005528	exon7	c.G655T	p.G219W	CGGCTAGGGCAGC	.	54	7	60	0	.	151	125	26	0	0
KLRB1	3820	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9760409	9760409	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KLRB1-90	NM_002258	exon1	c.G27C	p.E9D	GTTTAACTCAGCA	.	312	127	214	1	.	0	0	0	0	0
TAS2R20	259295	bcgsc.ca	37	12	11150319	11150319	+	Silent	SNP	T	T	C	rs11054143	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TAS2R20-90	NM_176889	exon1	c.A156G	p.A52A	GGAGACTGCCAGA	.	143	6	143	0	T|0.678;C|0.322	1	1	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	323	29	352	33	G|0.998;A|0.002	405	130	275	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	65	5	118	1	.	0	0	0	0	0
EP400	57634	bcgsc.ca	37	12	132547096	132547096	+	Silent	SNP	G	G	A	rs74479394		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	EP400-520	NM_015409	exon47	c.G8184A	p.Q2728Q	ACAACAGCAGCAG	.	282	12	168	3	.	17	4	13	0	0
SALL2	6297	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21991730	21991730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SALL2-92	NM_005407	exon2	c.G2132A	p.R711Q	TGCATCCGGACAT	.	114	53	90	1	.	0	0	0	0	0
ABHD4	63874	hgsc.bcm.edu	37	14	23078809	23078809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ABHD4-90	NM_022060	exon6	c.G932A	p.R311Q	ATGTCCGAGACAT	.	80	4	40	0	.	0	0	0	0	0
PLCB2	5330	broad.mit.edu;bcgsc.ca	37	15	40587141	40587141	+	Silent	SNP	C	C	T	rs201613773		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PLCB2-275	NM_004573	exon18	c.G1902A	p.T634T	ACCCATCGTCTGG	.	92	41	95	2	C|1.000;T|0.000	1	1	0	0	0
C15orf27	123591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	76467904	76467904	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	C15orf27-90	NM_152335	exon8	c.657delC	p.Y219X	AGCCTACGTCCTG	.	192	76	170	0	.	0	0	0	0	0
KLHDC4	54758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87742934	87742934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KLHDC4-182	NM_017566	exon10	c.G1384A	p.D462N	GCAGGTCGCTGAG	.	201	53	127	1	.	65	49	16	0	0
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1543262	1543262	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SCARF1-91	NM_145350	exon6	c.G1083A	p.G361G	ACAGGACCCCTGA	.	195	64	133	0	.	1	1	0	0	0
NOL11	25926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65734087	65734087	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	NOL11-90	NM_015462	exon13	c.A1528C	p.S510R	TTCTTGAGGTAAG	.	58	26	52	0	.	1	0	1	0	0
CD7	924	broad.mit.edu	37	17	80274162	80274162	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	CD7-90	NM_006137	exon3	c.521delC	p.P174fs	GCTGCTGGCGGGT	.	23	7	50	0	.	0	0	0	0	0
LAMA3	3909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21461949	21461949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LAMA3-100	NM_001127717	exon40	c.G5162A	p.G1721D	AGGAGGGCTACTA	.	189	82	142	0	.	0	0	0	0	0
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54348602	54348602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	WDR7-93	NM_052834	exon4	c.T325C	p.C109R	TTAGCTTGCACAC	.	196	49	156	0	.	1	1	0	0	0
ZNF516	9658	ucsc.edu	37	18	74154244	74154244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ZNF516-69	NM_014643	exon3	c.C767A	p.A256D	CTGAAGGCCTGGC	.	85	10	79	6	.	2	2	0	0	0
THOP1	7064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2790453	2790453	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	THOP1-92	NM_003249	exon2	c.G51A	p.P17P	ATCTCCGTGCTCT	.	93	50	100	0	.	1	0	1	0	0
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4210319	4210319	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ANKRD24-68	NM_133475	exon13	c.C1009T	p.L337L	CGCCTCCTGCAGA	.	411	171	426	0	.	1	1	0	0	0
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43968541	43968541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LYPD3-91	NM_014400	exon2	c.G147T	p.M49I	TGTCTTCATCTTG	.	207	29	99	0	.	0	0	0	0	0
LYPD3	27076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43968550	43968550	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LYPD3-91	NM_014400	exon2	c.G138A	p.P46P	CTTGTTCGGGGAG	.	219	29	112	1	.	0	0	0	0	0
PVRL2	5819	broad.mit.edu	37	19	45381598	45381600	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PVRL2-90	NM_002856	exon6	c.1161_1163del	p.387_388del	GAGGGTGAGGAGG	.	200	10	49	0	.	0	0	0	0	0
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25505395	25505395	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DNMT3A-1924	NM_175630	exon4	c.A363T	p.A121A	CTCAGCTGCACCC	.	61	27	71	0	.	2	1	1	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179501161	179501161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TTN-636	NM_001267550	exon225	c.A41293G	p.K13765E	TTTCTTTGTTTCC	.	105	49	112	0	.	0	0	0	0	0
SMOX	54498	hgsc.bcm.edu	37	20	4162847	4162847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SMOX-153	NM_175839	exon5	c.C721T	p.R241W	TTCATGCGGGTTG	.	65	4	63	0	.	0	0	0	0	0
GPCPD1	56261	broad.mit.edu	37	20	5556163	5556163	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	GPCPD1-90	NM_019593	exon10	c.A897T	p.P299P	GTATCCTGGTAAT	.	112	6	83	0	.	5	5	0	0	0
CST1	1469	broad.mit.edu	37	20	23728528	23728528	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	CST1-91	NM_001898	exon3	c.G351A	p.L117L	AGAGCACAACTGT	.	190	6	113	1	.	0	0	0	0	0
RBL1	5933	hgsc.bcm.edu;bcgsc.ca	37	20	35696518	35696518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	RBL1-419	NM_183404	exon3	c.G362A	p.R121H	TCTATACGTTCAC	.	51	4	51	0	.	0	0	0	0	0
ZBP1	81030	broad.mit.edu	37	20	56185352	56185352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ZBP1-228	NM_030776	exon7	c.G946T	p.G316W	CTTCCCCCTCAGG	.	133	4	160	2	.	0	0	0	0	0
TNFRSF6B	8771	bcgsc.ca	37	20	62328267	62328267	+	Silent	SNP	C	C	T	rs2257440	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TNFRSF6B-651	NM_003823	exon1	c.C147T	p.C49C	GGTGTGCGCCCAG	.	47	4	69	0	C|0.779;T|0.221	1	1	0	0	0
TMEM40	55287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12779634	12779634	+	Splice_Site	SNP	C	C	G	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TMEM40-90	NM_018306	exon8	c.424+1G>C	.	TATTTACCACTTG	.	147	60	127	0	.	0	0	0	0	0
TRAK1	22906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42265106	42265106	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TRAK1-91	NM_001042646	exon16	c.C2739T	p.G913G	TAGTGGCATCCGG	.	161	72	188	0	.	9	4	5	0	0
CACNA1D	776	broad.mit.edu	37	3	53529193	53529195	+	Frame_Shift_Del	DEL	GAT	GAT	-	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	CACNA1D-100	NM_001128840	wholegene			TTCGTGGATGATG	.	463	7	394	0	.	0	0	0	0	0
ZIC4	84107	bcgsc.ca	37	3	147108756	147108756	+	Silent	SNP	C	C	G	rs17509456	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ZIC4-91	NM_001168378	exon4	c.G1116C	p.S372S	CGCCGCCGAGGAG	.	10	3	54	0	C|0.975;G|0.025	0	0	0	0	0
LXN	56925	broad.mit.edu	37	3	158388792	158388792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LXN-90	NM_020169	exon2	c.G146A	p.G49E	TTATGTCCTCTTC	.	356	4	376	0	.	10	10	0	0	0
MUC4	4585	bcgsc.ca	37	3	195509383	195509383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	MUC4-90	NM_018406	exon2	c.C9068A	p.T3023N	AGAGGGGTGGCGT	.	155	11	489	5	.	0	0	0	0	0
SCFD2	152579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54231383	54231383	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SCFD2-93	NM_152540	exon1	c.A726C	p.L242F	CTGACTTAAGGAA	.	159	76	144	0	.	5	3	2	0	0
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79399070	79399070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	FRAS1-68	NM_025074	exon55	c.G7953A	p.M2651I	CAGCATGCCAGCT	.	267	113	241	2	.	0	0	0	0	0
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	104640739	104640739	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TACR3-525	NM_001059	exon1	c.94delG	p.A32fs	TGGCCGCCCCGGC	.	40	14	88	0	.	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114277261	114277261	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ANK2-583	NM_001148	exon38	c.C7487G	p.T2496R	CCAAAACAGAACT	.	75	28	70	0	.	0	0	0	0	0
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	118006510	118006519	+	Frame_Shift_Del	DEL	GAACGGGGGG	GAACGGGGGG	-	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	GAACGGGGGG	GAACGGGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TRAM1L1-90	NM_152402	exon1	c.31_40del	p.11_14del	GGCTGAGAACGGG	.	109	29	108	0	.	0	0	0	0	0
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	136973018	136973018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KLHL3-90	NM_017415	exon11	c.C1286T	p.T429M	CGCCGCGTGTTCA	.	178	82	142	0	.	0	0	0	0	0
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	161300197	161300197	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	GABRA1-93	NM_001127644	exon5	c.C330T	p.V110V	GACAGTCCTCCGG	.	72	8	90	0	.	0	0	0	0	0
HIST1H3B	8358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26031919	26031919	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	HIST1H3B-92	NM_003537	exon1	c.G370C	p.D124H	GGATGTCTTTGGG	.	128	51	111	0	.	0	0	0	0	0
MICA	100507436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31378525	31378525	+	Silent	SNP	C	C	T	rs17206561	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	.	NM_001177519	exon2	c.C276T	p.N92N	AGGGAACGGAAAG	.	232	108	196	1	C|0.765;T|0.235	25	16	9	0	0
PRIM2	5558	bcgsc.ca	37	6	57393112	57393112	+	RNA	SNP	T	T	C	rs11964288	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PRIM2-227	.	.	.	.	TTAAAGTCATTCC	.	33	9	31	0	T|0.985;C|0.015	0	0	0	0	0
DDO	8528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110714258	110714258	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DDO-155	NM_003649	exon5	c.A830C	p.E277A	CTATTTTCTGCAT	.	100	50	98	0	.	13	8	5	0	0
DNAJB9	4189	bcgsc.ca	37	7	108212353	108212353	+	Silent	SNP	G	G	A	rs1043615	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DNAJB9-226	NM_012328	exon2	c.G183A	p.P61P	GAGCCCGGATGCT	.	127	5	139	1	G|0.543;A|0.457	11	11	0	0	0
RBM28	55131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127954955	127954955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	RBM28-92	NM_018077	exon17	c.C1907T	p.P636L	TGCTCTGGGGGCA	.	178	63	153	0	.	15	10	5	0	0
KCNH2	3757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150647026	150647026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KCNH2-94	NM_172056	exon9	c.G2628C	p.R876S	GCGGATCCTGAAG	.	107	34	152	0	.	23	9	14	0	0
GPR124	25960	broad.mit.edu	37	8	37697097	37697097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	GPR124-157	NM_032777	exon16	c.C2468T	p.A823V	TCTTTGCGGGGGG	.	160	6	109	0	.	0	0	0	0	0
MEGF9	1955	bcgsc.ca	37	9	123421744	123421744	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	.	NM_001080497	exon2	c.C711A	p.T237T	TTTGCAGGTTTCA	.	94	4	103	0	.	1	1	0	0	0
NTMT1	28989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132395087	132395087	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	.	NM_014064	exon2	c.C105T	p.G35G	GTATGGCCACATC	.	175	71	178	0	.	99	65	34	0	0
SNAPC4	6621	broad.mit.edu;bcgsc.ca	37	9	139272547	139272547	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SNAPC4-90	NM_003086	exon21	c.G3732A	p.Q1244Q	CCCAGGCTGGCGC	.	19	5	36	0	.	9	6	3	0	0
BEX5	340542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101409174	101409174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	BEX5-86	NM_001012978	exon3	c.G64A	p.A22T	CTAAAGCGGGGGC	.	31	27	52	0	.	7	7	0	0	0
F8	2157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	154157135	154157135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	F8-182	NM_000132	exon14	c.A4930G	p.T1644A	CCCAGGTGACTTC	.	55	5	66	0	.	0	0	0	0	0
CD7	924	broad.mit.edu	37	17	80274159	80274160	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	CD7-90	NM_006137	exon3	c.524_525insA	p.A175fs	GAGGCTGCTGGCG	.	26	8	57	0	.	0	0	0	0	0
