Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ARHGEF16	27237	ucsc.edu;bcgsc.ca	37	1	3395174	3395174	+	Silent	SNP	C	C	A	rs61734742	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ARHGEF16-228	NM_014448	exon12	c.C1812A	p.S604S	GGACTCCGCGTAA	.	64	7	72	0	C|0.938;A|0.062	0	0	0	0	0
PEX14	5195	bcgsc.ca	37	1	10596341	10596341	+	Silent	SNP	C	C	T	rs12375	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PEX14-90	NM_004565	exon3	c.C156T	p.F52F	AGCATTCCTAAAG	.	172	8	273	0	C|0.770;T|0.230	0	0	0	0	0
MTHFR	4524	bcgsc.ca	37	1	11850927	11850927	+	Missense_Mutation	SNP	C	C	T	rs2274976	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MTHFR-90	NM_005957	exon12	c.G1781A	p.R594Q	CCCCACCGCTCAA	.	260	9	199	3	C|0.949;T|0.051	0	0	0	0	0
HNRNPCL1	343069	ucsc.edu;bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HNRNPCL1-68	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	59	10	88	0	.	0	0	0	0	0
AGMAT	79814	ucsc.edu;bcgsc.ca	37	1	15909850	15909850	+	Missense_Mutation	SNP	C	C	G	rs6429757	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AGMAT-91	NM_024758	exon2	c.G313C	p.G105R	CTGTCCCAAGCAT	.	70	7	74	0	C|0.348;G|0.652	0	0	0	0	0
WASF2	10163	broad.mit.edu;bcgsc.ca	37	1	27736665	27736665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	WASF2-228	NM_006990	exon8	c.C860T	p.A287V	GGTCCAGCCAAAC	.	105	25	68	1	.	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	16	16	0	0	G|0.061;T|0.939	0	0	0	0	0
C1orf94	84970	broad.mit.edu	37	1	34666398	34666398	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C1orf94-90	NM_001134734	exon3	c.1035delA	p.P345fs	GGAGCCAAAAAAG	.	180	7	143	0	.	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39920766	39920766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MACF1-165	NM_012090	exon86	c.T14895A	p.H4965Q	TGAGCATCAGGTA	.	115	8	110	0	.	0	0	0	0	0
KDM4A	9682	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44134891	44134891	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KDM4A-227	NM_014663	exon10	c.G1284A	p.T428T	GATGACGGAGTGC	.	305	65	210	1	.	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu	37	1	47904909	47904909	+	Missense_Mutation	SNP	G	G	C	rs2405913		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FOXD2-226	NM_004474	exon1	c.G1102C	p.A368P	TTCTACGCGGCGT	.	4	4	0	0	G|0.835;C|0.165	0	0	0	0	0
ADAMTSL4	54507	bcgsc.ca	37	1	150526044	150526044	+	Missense_Mutation	SNP	G	G	C	rs41317515	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ADAMTSL4-92	NM_019032	exon6	c.G577C	p.A193P	GAAGAGGCTATTC	.	186	8	123	0	G|0.456;C|0.544	0	0	0	0	0
FLG	2312	bcgsc.ca	37	1	152280782	152280782	+	Missense_Mutation	SNP	A	A	G	rs2184953	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FLG-106	NM_002016	exon3	c.T6580C	p.Y2194H	TGTCATATGTTTT	.	241	9	219	2	A|0.532;G|0.468	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	5	5	0	0	A|0.594;C|0.406	0	0	0	0	0
GATAD2B	57459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153800736	153800736	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GATAD2B-90	NM_020699	exon2	c.A88T	p.K30X	GTCGCTTTGCCAG	.	51	17	25	0	.	0	0	0	0	0
NUP210L	91181	hgsc.bcm.edu	37	1	154067601	154067601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NUP210L-77	NM_001159484	exon15	c.C1997A	p.T666K	TGCCATGTCACCA	.	56	4	36	0	.	0	0	0	0	0
CADM3	57863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159170626	159170626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CADM3-92	NM_021189	exon10	c.G1213A	p.D405N	GGCTCCGACGATG	.	392	114	343	0	.	0	0	0	0	0
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	167095939	167095939	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DUSP27-71	NM_001080426	exon5	c.G1571C	p.G524A	GCGTGGGCTCTGA	.	477	28	397	0	.	0	0	0	0	0
TNR	7143	broad.mit.edu	37	1	175375841	175375841	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TNR-324	NM_003285	exon3	c.G10C	p.D4H	CCCCATCTGCCCC	.	113	4	100	0	.	0	0	0	0	0
IER5	51278	hgsc.bcm.edu	37	1	181058313	181058313	+	Missense_Mutation	SNP	G	G	A	rs3747955		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	IER5-227	NM_016545	exon1	c.G275A	p.R92H	CCGCTCGTGCCTC	.	20	20	0	0	G|0.568;A|0.432	0	0	0	0	0
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182525184	182525184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RGSL1-226	NM_001137669	exon21	c.G3223C	p.E1075Q	AAAAAAGAGAAGT	.	136	36	145	0	.	0	0	0	0	0
SLC26A9	115019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205890762	205890762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SLC26A9-92	NM_052934	exon17	c.C1987A	p.H663N	GGGTGTGGAAGGT	.	85	26	62	0	.	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	57	14	2	0	T|0.721;G|0.279	0	0	0	0	0
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	218609421	218609421	+	Silent	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TGFB2-710	NM_001135599	exon6	c.C948G	p.S316S	GCCCTCCTACAGA	.	291	36	317	0	.	0	0	0	0	0
LBR	3930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225600179	225600179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LBR-228	NM_194442	exon8	c.A1061G	p.N354S	AGGTCATTCCGGG	.	289	53	280	1	.	0	0	0	0	0
H3F3AP4	440926	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226253533	226253533	+	RNA	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	.	.	.	.	GAAGACTCAGAGT	.	231	64	174	0	.	0	0	0	0	0
GJC2	57165	hgsc.bcm.edu	37	1	228346053	228346053	+	Silent	SNP	C	C	T	rs116557768		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GJC2-68	NM_020435	exon2	c.C594T	p.H198H	GCAACACGATGGG	.	73	49	1	0	C|0.986;T|0.014	0	0	0	0	0
GPRIN2	9721	ucsc.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs9422022	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPRIN2-90	NM_014696	exon3	c.G721A	p.V241M	AGGGAGGTGAGGG	.	137	20	95	0	G|0.639;A|0.361	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	35	10	0	0	G|0.901;A|0.099	0	0	0	0	0
ARHGAP22	58504	hgsc.bcm.edu	37	10	49659006	49659006	+	Missense_Mutation	SNP	G	G	A	rs80345791		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ARHGAP22-228	NM_001256024	exon9	c.C1214T	p.P405L	TGCGCGGGCAGGC	.	34	14	1	0	G|0.987;A|0.013	0	0	0	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55582342	55582342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDH15-193	NM_001142763	exon35	c.G5165T	p.R1722I	GTCTCTCTCCTAG	.	43	11	89	0	.	0	0	0	0	0
SPOCK2	9806	hgsc.bcm.edu	37	10	73848075	73848075	+	Silent	SNP	C	C	T	rs2306324		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SPOCK2-90	NM_001134434	exon2	c.G12A	p.P4P	GCAGCCCGGGGCG	.	10	5	0	0	C|0.870;T|0.130	0	0	0	0	0
OIT3	170392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74684374	74684374	+	Missense_Mutation	SNP	G	G	A	rs139078371		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OIT3-70	NM_152635	exon7	c.G1339A	p.V447I	GACGAGGTCCTGA	.	214	40	152	0	G|1.000;A|0.000	0	0	0	0	0
C10orf11	83938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	77542776	77542776	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C10orf11-90	NM_032024	exon1	c.A43T	p.K15X	TCAAATAAAAGGT	.	110	17	102	0	.	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	33	17	1	0	C|0.339;G|0.661	0	0	0	0	0
LZTS2	84445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102766836	102766836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LZTS2-155	NM_032429	exon5	c.G1921A	p.E641K	AGCCTGGAGCTGG	.	247	44	84	1	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	16	16	0	0	A|0.009;G|0.991	0	0	0	0	0
CDHR5	53841	broad.mit.edu;bcgsc.ca	37	11	624261	624263	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CDHR5-90	NM_031264	exon3	c.262_264del	p.88_88del	TGACTTCTCCTGT	.	340	38	121	0	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MUC2-90	NM_002457	exon30	c.C4766A	p.T1589N	CCACCACCACTAC	.	186	5	114	1	.	0	0	0	0	0
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5510738	5510738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OR52D1-68	NM_001005163	exon1	c.G802C	p.G268R	CGCTTTGGTCACC	.	123	27	122	0	.	0	0	0	0	0
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6579406	6579406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNHD1-24	NM_144666	exon25	c.G8881A	p.A2961T	GCCCTGGCAACCT	.	242	45	144	1	.	0	0	0	0	0
FANCF	2188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	22646416	22646416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FANCF-1083	NM_022725	exon1	c.T941C	p.L314P	TGACAGAGGCTTT	.	96	10	93	0	.	0	0	0	0	0
PRDM11	56981	broad.mit.edu	37	11	45204461	45204461	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PRDM11-91	NM_001256695	exon4	c.C273A	p.G91G	CCATGGCCCCCCG	.	113	5	80	0	.	0	0	0	0	0
DGKZ	8525	hgsc.bcm.edu	37	11	46387868	46387868	+	Missense_Mutation	SNP	A	A	G	rs1317826	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DGKZ-676	NM_001105540	exon2	c.A62G	p.Q21R	GGCAGCAGCGGCC	.	4	4	0	0	A|0.608;G|0.392	0	0	0	0	0
DGKZ	8525	hgsc.bcm.edu	37	11	46387906	46387906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DGKZ-676	NM_001105540	exon2	c.C100T	p.R34W	AAGGCCCGGCGTC	.	5	5	0	0	.	0	0	0	0	0
DDB2	1643	broad.mit.edu	37	11	47256376	47256376	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DDB2-971	NM_000107	exon6	c.771delC	p.F257fs	TTGGTTCCTGGCC	.	232	21	107	0	.	0	0	0	0	0
OR5M1	390168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56380625	56380625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OR5M1-94	NM_001004740	exon1	c.G354A	p.M118I	CAATGCCATTGAA	.	362	74	350	0	.	0	0	0	0	0
OR10Q1	219960	broad.mit.edu;bcgsc.ca	37	11	57995729	57995729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OR10Q1-70	NM_001004471	exon1	c.G619A	p.V207M	TGCTCACGACATA	.	277	12	276	0	.	0	0	0	0	0
PPP1R32	220004	bcgsc.ca	37	11	61249383	61249383	+	Silent	SNP	C	C	A	rs3019200	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001170753	exon2	c.C102A	p.T34T	CTGCACCGCCTAC	.	61	5	44	0	C|0.251;A|0.749	0	0	0	0	0
SYT7	9066	broad.mit.edu;bcgsc.ca	37	11	61291923	61291923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SYT7-94	NM_001252065	exon7	c.T929C	p.I310T	TCCCCAATGGGGT	.	272	11	169	0	.	0	0	0	0	0
INCENP	3619	hgsc.bcm.edu	37	11	61914282	61914282	+	Silent	SNP	G	G	A	rs113981632		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	INCENP-227	NM_001040694	exon15	c.G2112A	p.E704E	GCGCGAGCAGGAG	.	9	5	1	0	A|0.035;G|0.965	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	6	6	0	0	G|0.005;C|0.995	0	0	0	0	0
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65386303	65386303	+	Silent	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCNXL3-46	NM_032223	exon6	c.G1470C	p.R490R	CCAGCGGACGCCT	.	34	12	18	0	.	0	0	0	0	0
SPTBN2	6712	broad.mit.edu	37	11	66461607	66461608	+	Splice_Site	DEL	CA	CA	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SPTBN2-155	.	.	.	.	GTGACTCACAATC	.	18	8	11	0	.	0	0	0	0	0
LRRC32	2615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76370747	76370747	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRRC32-90	NM_005512	exon3	c.C1890A	p.I630I	GAGGATGATGATG	.	108	16	95	0	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751604	+	In_Frame_Del	DEL	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_138706	exon4	c.989_1006del	p.330_336del	GCATCCTGGCCCT	.	32	0	1	0	.	0	0	0	0	0
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	78369696	78369696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001098816	exon34	c.G7717T	p.A2573S	TCAAGGCAAACTT	.	114	11	114	0	.	0	0	0	0	0
TMEM135	65084	broad.mit.edu	37	11	86749164	86749164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TMEM135-514	NM_022918	exon1	c.C77T	p.S26F	GGGTCTCCTTCCT	.	98	5	98	1	.	0	0	0	0	0
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92624186	92624186	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAT3-73	NM_001008781	exon25	c.A13581T	p.E4527D	TTCCGAAGTAGCC	.	145	40	150	2	.	0	0	0	0	0
BACE1	23621	hgsc.bcm.edu	37	11	117186506	117186506	+	Silent	SNP	G	G	A	rs28917234	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	BACE1-91	NM_138972	exon1	c.C6T	p.A2A	GGCTTGGGCCATG	.	16	6	0	0	G|0.979;A|0.021	0	0	0	0	0
PDZD3	79849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119057343	119057343	+	Nonsense_Mutation	SNP	G	G	T	rs141570563	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PDZD3-153	NM_001168468	exon4	c.G274T	p.G92X	CAGGAAGGAGACA	.	210	57	130	0	G|1.000;A|0.000	0	0	0	0	0
B3GAT1	27087	hgsc.bcm.edu	37	11	134253805	134253805	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	B3GAT1-91	NM_054025	exon3	c.C390T	p.T130T	GCGCGCGGTCAGC	.	21	9	1	0	.	0	0	0	0	0
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2912330	2912330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FKBP4-226	NM_002014	exon10	c.C1286G	p.A429G	CAGAGGCTTCCTC	.	64	17	36	0	.	0	0	0	0	0
C1S	716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7177252	7177252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C1S-91	NM_201442	exon12	c.T1364A	p.F455Y	TCTTCTTTGACAA	.	100	23	84	0	.	0	0	0	0	0
IPO8	10526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	30783824	30783824	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	IPO8-227	NM_006390	exon25	c.T3084A	p.F1028L	AAAATTAAATGCG	.	87	21	116	0	.	0	0	0	0	0
CNTN1	1272	broad.mit.edu	37	12	41419057	41419057	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CNTN1-1149	NM_001843	exon21	c.T2629G	p.Y877D	ACCCAGTATTTTA	.	70	4	110	1	.	0	0	0	0	0
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51451824	51451824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LETMD1-90	NM_001243689	exon8	c.C964G	p.L322V	TGTTATCTCCGTG	.	118	23	73	0	.	0	0	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	108	7	40	0	.	0	0	0	0	0
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57594933	57594933	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRP1-596	NM_002332	exon65	c.T10342A	p.C3448S	AGGGACTGCCGTG	.	148	12	82	0	.	0	0	0	0	0
SLC26A10	65012	broad.mit.edu	37	12	58015619	58015619	+	Silent	SNP	C	C	T	rs184174469		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SLC26A10-531	NM_133489	exon4	c.C702T	p.V234V	GGAAGTCGTCTTG	.	213	4	58	0	C|0.994;T|0.006	0	0	0	0	0
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67691276	67691276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CAND1-516	NM_018448	exon5	c.G581C	p.R194T	GGAAAAGAACCAT	.	102	20	112	0	.	0	0	0	0	0
CCER1	196477	broad.mit.edu	37	12	91347423	91347423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_152638	exon1	c.C1097T	p.S366L	AAGATTGATAAAG	.	111	4	132	0	.	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	13	13	0	0	A|0.273;G|0.727	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	21	18	0	0	C|0.752;T|0.248	0	0	0	0	0
PAH	5053	broad.mit.edu;bcgsc.ca	37	12	103306614	103306614	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PAH-72	NM_000277	exon2	c.C123A	p.L41L	TTCTTTGAGTGAG	.	232	10	230	3	.	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800570	111800570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM109A-90	NM_001177996	exon4	c.T701C	p.M234T	GGGGCCATGTCCA	.	23	10	1	0	.	0	0	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	19	14	1	0	T|0.767;C|0.233	0	0	0	0	0
RFC5	5985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118454660	118454660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RFC5-227	NM_007370	exon1	c.G28A	p.E10K	CAGCAGGAGCAGC	.	176	43	103	1	.	0	0	0	0	0
STX2	2054	broad.mit.edu	37	12	131285773	131285773	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	STX2-90	NM_194356	exon8	c.C600T	p.D200D	CATGATGTCCTTG	.	141	5	100	0	.	0	0	0	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133159733	133159733	+	Missense_Mutation	SNP	C	C	T	rs11550079		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FBRSL1-70	NM_001142641	exon17	c.C2507T	p.A836V	AGGAGGCCGCCAA	.	9	4	0	0	C|0.470;T|0.530	0	0	0	0	0
MTUS2	23281	bcgsc.ca	37	13	29599410	29599410	+	Missense_Mutation	SNP	C	C	T	rs116224145	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MTUS2-218	NM_001033602	exon1	c.C605T	p.P202L	TGACTCCGCAGCA	.	98	5	137	0	C|0.972;T|0.028	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170726	46170726	+	Missense_Mutation	SNP	A	A	G	rs28548352		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM194B-68	NM_182542	exon3	c.T415C	p.Y139H	CCAGATACTCTTC	.	40	6	80	0	.	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170735	46170735	+	Missense_Mutation	SNP	C	C	T	rs28460344		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM194B-68	NM_182542	exon3	c.G406A	p.E136K	CTTCCTCCTCCAG	.	41	7	79	0	.	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170737	46170737	+	Missense_Mutation	SNP	T	T	C	rs200764156		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM194B-68	NM_182542	exon3	c.A404G	p.E135G	TCCTCCTCCAGAT	.	42	7	78	0	.	0	0	0	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	rs898861		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_198989	exon1	c.C248T	p.A83V	GAGTTCGCCCGCG	.	7	6	0	0	G|0.789;A|0.211	0	0	0	0	0
SLITRK6	84189	hgsc.bcm.edu	37	13	86369481	86369481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SLITRK6-137	NM_032229	exon2	c.C1163A	p.T388N	TCCAAAGTGAAAT	.	68	4	126	0	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103389045	103389045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001146197	exon4	c.G14002A	p.E4668K	GCAGTTCCTTTGT	.	24	6	35	0	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103397964	103397964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001146197	exon4	c.C5083A	p.Q1695K	AAAATTGTTTTAA	.	23	7	94	0	.	0	0	0	0	0
COL4A2	1284	bcgsc.ca	37	13	111111173	111111173	+	Silent	SNP	G	G	A	rs7990214	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	COL4A2-95	NM_001846	exon22	c.G1488A	p.P496P	TCTTCCGGGACTG	.	183	7	183	1	G|0.463;A|0.537	0	0	0	0	0
COL4A2	1284	bcgsc.ca	37	13	111111235	111111235	+	Missense_Mutation	SNP	G	G	A	rs7990383	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	COL4A2-95	NM_001846	exon22	c.G1550A	p.R517K	GGGACAGAGGAGA	.	163	7	168	1	G|0.479;A|0.521	0	0	0	0	0
MCF2L	23263	broad.mit.edu	37	13	113719264	113719264	+	Silent	SNP	C	C	T	rs199810332		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MCF2L-228	NM_001112732	exon7	c.C621T	p.F207F	AAGTTTCGCCCTC	.	187	4	144	2	C|0.999;T|0.001	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	59	6	12	0	.	0	0	0	0	0
TRIM9	114088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	51561207	51561207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TRIM9-227	NM_015163	exon1	c.C451A	p.L151M	CTTCCAGTACGCG	.	136	9	71	0	.	0	0	0	0	0
LGALS3	3958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55611906	55611906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LGALS3-514	NM_002306	exon6	c.C670T	p.R224W	AATCATCGGGTTA	.	141	39	113	0	.	0	0	0	0	0
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81259439	81259439	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CEP128-91	NM_152446	exon13	c.C1225G	p.L409V	TCTCCAGTTCACG	.	85	20	78	0	.	0	0	0	0	0
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	93962775	93962775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_020818	exon6	c.T200A	p.L67Q	AATTACTGGAATG	.	258	16	312	0	.	0	0	0	0	0
OTUB2	78990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	94510351	94510353	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OTUB2-500	NM_023112	exon4	c.253_255del	p.85_85del	AATGACCTTCTGG	.	251	57	220	0	.	0	0	0	0	0
EML1	2009	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100404174	100404174	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	EML1-138	NM_001008707	exon21	c.C2173T	p.Q725X	TGTAAGCAAGTCG	.	173	34	125	1	.	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	10	10	0	0	G|0.327;T|0.673	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644984	104644984	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KIF26A-24	NM_015656	exon13	c.G5208T	p.P1736P	GCCCCCGCCCCTG	.	58	12	12	0	.	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921115	24921115	+	Missense_Mutation	SNP	C	C	A	rs35022251	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_018958	exon1	c.C101A	p.P34Q	CCTCCCCGCCCGG	.	13	8	0	0	C|0.970;A|0.030	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	24921967	24921967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_018958	exon1	c.C953A	p.P318H	CTCCTCCCAGAGC	.	43	15	39	0	.	0	0	0	0	0
DUOX1	53905	hgsc.bcm.edu	37	15	45453135	45453135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DUOX1-142	NM_017434	exon30	c.T3803A	p.L1268Q	TGAGCCTGAGCCG	.	163	15	147	0	.	0	0	0	0	0
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54542551	54542551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UNC13C-51	NM_001080534	exon6	c.G3357T	p.W1119C	CCTGTGGGGCATT	.	190	47	261	0	.	0	0	0	0	0
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74467204	74467204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ISLR-155	NM_201526	exon2	c.A5G	p.Q2R	CCATGCAGGAGCT	.	41	14	39	0	.	0	0	0	0	0
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75809664	75809665	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PTPN9-226	NM_002833	exon5	c.463_464del	p.155_155del	CCACACATGTCAT	.	92	29	103	0	.	0	0	0	0	0
MESP2	145873	hgsc.bcm.edu	37	15	90319773	90319773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MESP2-68	NM_001039958	exon1	c.G185A	p.R62Q	GCTCCCGAGCCGC	.	9	5	0	0	.	0	0	0	0	0
UNKL	64718	broad.mit.edu	37	16	1417283	1417283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UNKL-90	NM_001193388	exon14	c.G1856A	p.R619Q	AGCTGCCGGTCGC	.	118	10	15	0	.	0	0	0	0	0
CLCN7	1186	bcgsc.ca	37	16	1503879	1503879	+	Silent	SNP	T	T	A	rs2235579	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CLCN7-92	NM_001287	exon14	c.A1170T	p.A390A	GAACACTGCTCCA	.	216	9	124	1	T|0.472;A|0.528	0	0	0	0	0
SYNGR3	9143	hgsc.bcm.edu	37	16	2042139	2042139	+	Silent	SNP	C	C	A	rs12922682	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SYNGR3-90	NM_004209	exon2	c.C264A	p.L88L	GCTGCTCGATGTG	.	50	33	0	0	C|0.996;A|0.004	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304463	3304463	+	Missense_Mutation	SNP	C	C	T	rs224222	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MEFV-228	NM_000243	exon2	c.G605A	p.R202Q	CGCAGCCGGACCT	.	16	9	0	0	C|0.816;T|0.184	0	0	0	0	0
DNASE1	1773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3705910	3705910	+	Missense_Mutation	SNP	G	G	C	rs143363152	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNASE1-90	NM_005223	exon3	c.G208C	p.V70L	ACTGCCGTGGGGA	.	204	50	126	0	G|1.000;T|0.000	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15168670	15168670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RRN3-91	NM_018427	exon11	c.C907A	p.L303I	GGTCGAGCCGTTC	.	93	8	81	3	.	0	0	0	0	0
ADCY7	113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50326734	50326734	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ADCY7-91	NM_001114	exon4	c.C685T	p.Q229X	CGCCAGCAGGTGG	.	47	14	33	0	.	0	0	0	0	0
CDH1	999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	68867311	68867314	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CAGA	CAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CDH1-3377	NM_004360	exon16	c.2558_2561del	p.853_854del	CAGAGTCAGACAA	.	146	24	85	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	17	10	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	12	10	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	12	10	0	0	.	0	0	0	0	0
CYBA	1535	hgsc.bcm.edu	37	16	88709869	88709869	+	Silent	SNP	C	C	T	rs72547284	byfrequency;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CYBA-90	NM_000101	exon6	c.G480A	p.P160P	CTCGGCCGGGGGC	.	5	4	0	0	C|0.985;T|0.015	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693384	4693384	+	Silent	SNP	T	T	C	rs150754782		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GLTPD2-68	NM_001014985	exon4	c.T669C	p.G223G	CCTGGGTCCGCAT	.	16	9	1	0	T|0.978;C|0.022	0	0	0	0	0
PLSCR3	57048	hgsc.bcm.edu	37	17	7297121	7297121	+	Silent	SNP	G	G	A	rs2277641	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLSCR3-22	NM_020360	exon3	c.C42T	p.P14P	AGGTGGGGGCGAA	.	7	5	1	0	G|0.929;A|0.071	0	0	0	0	0
LSMD1	84316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7760499	7760499	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LSMD1-91	NM_032356	exon1	c.C243T	p.R81R	GTCCTCGCGCTCT	.	95	19	62	1	.	0	0	0	0	0
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10428659	10428659	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MYH2-194	NM_017534	exon33	c.T4544A	p.I1515N	TCAGAAATCTCCT	.	60	20	78	0	.	0	0	0	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13400090	13400090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HS3ST3A1-515	NM_006042	exon2	c.G645C	p.K215N	GGGCGTCTTCTCC	.	419	13	272	1	.	0	0	0	0	0
UBB	7314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	16285604	16285604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UBB-47	NM_018955	exon2	c.A383G	p.D128G	TGGAAGATGGCCG	.	437	83	214	0	.	0	0	0	0	0
SMCR8	140775	broad.mit.edu	37	17	18221001	18221001	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SMCR8-91	NM_144775	exon1	c.1898delA	p.E633fs	CAGTGGAAAATGC	.	187	7	133	0	.	0	0	0	0	0
NEK8	284086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27064883	27064883	+	Silent	SNP	G	G	A	rs146798411		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NEK8-335	NM_178170	exon7	c.G936A	p.S312S	ACTGTCGTCAGTG	.	237	35	70	0	G|1.000;A|0.000	0	0	0	0	0
KRTAP3-2	83897	bcgsc.ca	37	17	39156027	39156027	+	Missense_Mutation	SNP	G	G	A	rs3829598	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_031959	exon1	c.C79T	p.R27C	CACAGCGGCAGGA	.	195	8	315	3	G|0.865;A|0.135	0	0	0	0	0
FKBP10	60681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39974745	39974745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FKBP10-227	NM_021939	exon4	c.C693G	p.I231M	TATCATCCCTCCA	.	142	45	149	0	.	0	0	0	0	0
BECN1	8678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40963676	40963676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	BECN1-228	NM_003766	exon11	c.A1181G	p.Y394C	GACCTGTAGGGAA	.	97	27	85	0	.	0	0	0	0	0
GRN	2896	broad.mit.edu	37	17	42427607	42427607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GRN-517	NM_002087	exon5	c.G361A	p.V121M	AACTCCGTGGGTG	.	155	5	99	0	.	0	0	0	0	0
MARCH10	162333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60779069	60779069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MARCH10-90	NM_001100875	exon11	c.G2422A	p.V808I	GCTAGACGACCTG	.	109	16	59	0	.	0	0	0	0	0
RAB37	326624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72740494	72740494	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RAB37-230	NM_001163989	exon6	c.C429T	p.I143I	GGTGATCATGCTG	.	124	10	62	0	.	0	0	0	0	0
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72862635	72862635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FDXR-226	NM_001258012	exon4	c.G455C	p.G152A	ACGTTGCCCCAGA	.	401	102	184	1	.	0	0	0	0	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76424635	76424635	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNAH17-142	NM_173628	exon77	c.12559delG	p.A4187fs	TGCCTGCCCCCGA	.	154	43	88	0	.	0	0	0	0	0
TIMP2	7077	hgsc.bcm.edu	37	17	76921135	76921135	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TIMP2-650	NM_003255	exon1	c.C36T	p.L12L	GAGGCCGAGCGCC	.	17	8	0	0	.	0	0	0	0	0
BAHCC1	57597	broad.mit.edu	37	17	79410879	79410881	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	BAHCC1-23	.	.	.	.	GAGGCTGAGGAGG	.	108	11	30	0	.	0	0	0	0	0
FASN	2194	hgsc.bcm.edu	37	17	80043739	80043739	+	Silent	SNP	A	A	G	rs2229422	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FASN-90	NM_004104	exon23	c.T3741C	p.A1247A	GTGGCCAGCCAGC	.	10	4	1	0	T|0.697;G|0.014;C|0.242;A|0.047	0	0	0	0	0
CSNK1D	1453	broad.mit.edu;ucsc.edu	37	17	80206823	80206823	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CSNK1D-909	NM_001893	exon8	c.C1125A	p.R375R	GGCCCCGCGGTGC	.	98	13	69	1	.	0	0	0	0	0
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	14763720	14763720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ANKRD30B-24	NM_001145029	exon7	c.C856A	p.P286T	GCTGCACCCTTGG	.	55	11	46	0	.	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31323513	31323513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ASXL3-49	NM_030632	exon12	c.A3701T	p.N1234I	ATAAAAATTCTGT	.	37	15	51	0	.	0	0	0	0	0
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	42531586	42531586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SETBP1-155	NM_015559	exon4	c.G2281A	p.V761M	CCAGCCGTGCCTT	.	152	27	158	0	.	0	0	0	0	0
SERPINB10	5273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61587036	61587036	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SERPINB10-227	NM_005024	exon4	c.C387T	p.D129D	AGAAGACATGAAA	.	48	7	87	0	.	0	0	0	0	0
CDH7	1005	broad.mit.edu	37	18	63547655	63547655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CDH7-94	NM_004361	exon12	c.T1883C	p.V628A	TTATCGTCACTAT	.	55	3	50	0	.	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	8	8	0	0	C|0.390;A|0.610	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	6	6	0	0	C|0.780;G|0.220	0	0	0	0	0
C19orf21	126353	bcgsc.ca	37	19	756985	756985	+	Silent	SNP	T	T	G	rs8110536	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C19orf21-91	NM_173481	exon2	c.T39G	p.P13P	CATCCCTCAGGCA	.	337	10	128	0	T|0.840;G|0.160	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	8	6	0	0	T|0.495;C|0.504	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1009551	1009577	+	In_Frame_Del	DEL	GCCCCCGCGGAGGCCCCACCACACTCT	GCCCCCGCGGAGGCCCCACCACACTCT	-	rs58448123	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	GCCCCCGCGGAGGCCCCACCACACTCT	GCCCCCGCGGAGGCCCCACCACACTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GRIN3B-90	NM_138690	exon9	c.3082_3108del	p.1028_1036del	AGAGCGGCCCCCG	.	18	17	0	0	.	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	27	19	1	0	C|0.766;T|0.234	0	0	0	0	0
CREB3L3	84699	broad.mit.edu	37	19	4168347	4168347	+	Splice_Site	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CREB3L3-92	NM_001271995	exon6	c.712-1G>A	.	TTGGCAGTACGAG	.	66	25	46	2	.	0	0	0	0	0
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5041154	5041154	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KDM4B-226	NM_015015	exon5	c.T324C	p.C108C	GTACTGTACCCCG	.	140	12	104	0	.	0	0	0	0	0
C3	718	broad.mit.edu;bcgsc.ca	37	19	6684638	6684638	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C3-95	NM_000064	exon32	c.G4053A	p.K1351K	TTTGGCCTTAGCA	.	180	11	140	1	.	0	0	0	0	0
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10600462	10600462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KEAP1-637	NM_012289	exon4	c.G1393A	p.V465M	CAGCCACGCCCAC	.	264	27	60	0	.	0	0	0	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11097013	11097013	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SMARCA4-1523	NM_003072	exon4	c.C504T	p.G168G	CCGGGGCCCAACC	.	136	17	50	0	.	0	0	0	0	0
NOTCH3	4854	ucsc.edu	37	19	15284881	15284881	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NOTCH3-855	NM_000435	exon25	c.C4734T	p.I1578I	TCACCCGATCACC	.	111	19	21	1	.	0	0	0	0	0
NCAN	1463	broad.mit.edu	37	19	19339014	19339014	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NCAN-94	NM_004386	exon8	c.A2585C	p.Q862P	GCCCTCAGGTGGC	.	105	3	58	0	.	0	0	0	0	0
TSHZ3	57616	ucsc.edu;bcgsc.ca	37	19	31770605	31770605	+	Missense_Mutation	SNP	G	G	A	rs200205002		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TSHZ3-232	NM_020856	exon2	c.C94T	p.P32S	CCTCTGGGTCTAA	.	39	5	26	0	G|0.999;A|0.001	0	0	0	0	0
GPATCH1	55094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33579080	33579080	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPATCH1-91	NM_018025	exon2	c.T114A	p.T38T	TCAGACTGTCAGA	.	45	11	31	0	.	0	0	0	0	0
ETV2	2116	broad.mit.edu	37	19	36135558	36135558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ETV2-226	NM_014209	exon7	c.C833A	p.A278D	AGGTGGCTCGGCT	.	154	10	48	1	.	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu	37	19	38573068	38573068	+	Missense_Mutation	SNP	C	C	T	rs150674546		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SIPA1L3-91	NM_015073	exon3	c.C863T	p.A288V	AACCTGCGCGGGG	.	27	15	2	0	C|0.989;T|0.011	0	0	0	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876464	38876464	+	Missense_Mutation	SNP	C	C	G	rs11083455		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GGN-90	NM_152657	exon3	c.G1438C	p.A480P	GGGCTGCGGTGGG	.	11	6	0	0	C|0.789;G|0.211	0	0	0	0	0
FAM98C	147965	hgsc.bcm.edu	37	19	38894307	38894307	+	Missense_Mutation	SNP	G	G	A	rs150024474		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM98C-91	NM_174905	exon3	c.G322A	p.E108K	CTTCGGGAACCCG	.	12	9	1	0	G|0.968;A|0.032	0	0	0	0	0
MAP3K10	4294	hgsc.bcm.edu	37	19	40720079	40720079	+	Silent	SNP	C	C	T	rs3746005		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MAP3K10-981	NM_002446	exon9	c.C2493T	p.D831D	ATCGGACGGGGCG	.	4	4	0	0	C|0.260;T|0.740	0	0	0	0	0
CYP2B6	1555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41509976	41509976	+	Missense_Mutation	SNP	T	T	C	rs138912615		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CYP2B6-92	NM_000767	exon2	c.T242C	p.V81A	GTGGAGTAGAGGC	.	355	46	180	0	T|1.000;C|0.000	0	0	0	0	0
CEACAM6	4680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42270108	42270108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CEACAM6-91	NM_002483	exon5	c.T976C	p.S326P	GTCCTCTCAGCTG	.	176	16	92	0	.	0	0	0	0	0
DMRTC2	63946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42354402	42354402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DMRTC2-90	NM_001040283	exon7	c.C778G	p.P260A	CTCCAGCCCTGTG	.	127	20	92	0	.	0	0	0	0	0
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42795782	42795782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CIC-591	NM_015125	exon11	c.T2771A	p.V924E	TCCTAGTGCCTCT	.	145	28	43	0	.	0	0	0	0	0
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	6	6	0	0	T|0.245;C|0.755	0	0	0	0	0
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50157674	50157674	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SCAF1-68	NM_021228	exon8	c.C3385G	p.Q1129E	CTGATCCAGGCCA	.	196	37	97	0	.	0	0	0	0	0
PNKP	11284	broad.mit.edu	37	19	50370414	50370414	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PNKP-253	NM_007254	exon2	c.T48C	p.P16P	TCCCCCAGGGGGG	.	107	15	20	2	.	0	0	0	0	0
MYH14	79784	hgsc.bcm.edu	37	19	50713814	50713814	+	Silent	SNP	G	G	T	rs181055215		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MYH14-23	NM_001077186	exon2	c.G192T	p.G64G	TCACGGGTTCGAG	.	86	52	2	0	.	0	0	0	0	0
LILRA4	23547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54849247	54849247	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LILRA4-91	NM_012276	exon4	c.G615A	p.V205V	CGACCACACGTAT	.	102	16	65	0	.	0	0	0	0	0
LILRA2	11027	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	55098715	55098715	+	Missense_Mutation	SNP	C	C	T	rs149580797	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LILRA2-91	NM_001130917	exon8	c.C1354T	p.R452C	CTCATCCGCATGG	.	266	36	142	0	C|0.996;T|0.004	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	4	4	0	0	A|0.270;G|0.730	0	0	0	0	0
ZNF784	147808	hgsc.bcm.edu	37	19	56133551	56133551	+	Missense_Mutation	SNP	C	C	T	rs200843026		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF784-68	NM_203374	exon2	c.G538A	p.E180K	CCACCTCCGCCCT	.	26	17	0	0	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	11	11	0	0	.	0	0	0	0	0
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57335765	57335765	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PEG3-164	NM_001146184	exon3	c.G259C	p.E87Q	AGAGCTCGATGAT	.	218	60	225	0	.	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	108	15	42	0	G|0.500;T|0.500	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	104	15	42	0	C|0.500;T|0.500	0	0	0	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43953487	43953487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLEKHH2-92	NM_172069	exon17	c.A2618C	p.Y873S	AAGATTATGAAGC	.	314	7	230	0	.	0	0	0	0	0
PROKR1	10887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68873425	68873425	+	Missense_Mutation	SNP	A	A	G	rs147256235		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PROKR1-523	NM_138964	exon1	c.A472G	p.I158V	CTGGCCATCGCCA	.	150	32	100	0	A|1.000;G|0.000	0	0	0	0	0
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75115104	75115104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HK2-252	NM_000189	exon16	c.G2294T	p.G765V	AGCGTGGACTACT	.	275	39	188	0	.	0	0	0	0	0
TGOLN2	10618	broad.mit.edu;bcgsc.ca	37	2	85553698	85553700	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TGOLN2-22	NM_001206841	exon2	c.1155_1157del	p.385_386del	TATGCAAAGAAGT	.	292	42	168	0	.	0	0	0	0	0
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	100167958	100167958	+	Missense_Mutation	SNP	C	C	T	rs150108936		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AFF3-230	NM_001025108	exon24	c.G3734A	p.R1245Q	CTGTTCCGCAGCC	.	90	26	49	0	C|1.000;T|0.000	0	0	0	0	0
POU3F3	5455	bcgsc.ca	37	2	105473180	105473180	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	POU3F3-45	NM_006236	exon1	c.C1212A	p.G404G	GCAGGGCCGCAAG	.	634	30	350	3	.	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682235	106682235	+	Silent	SNP	C	C	G	rs4266035		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	16	16	0	0	C|0.795;G|0.205	0	0	0	0	0
EN1	2019	broad.mit.edu	37	2	119600586	119600586	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	EN1-154	NM_001426	exon2	c.G1107T	p.A369A	GTGCAGCGCCAGG	.	207	9	105	2	.	0	0	0	0	0
TMEM194B	100131211	hgsc.bcm.edu	37	2	191399378	191399378	+	Missense_Mutation	SNP	C	C	G	rs13412879		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001142645	exon1	c.G4C	p.G2R	GCGGCCCCATTTC	.	6	6	0	0	C|0.836;G|0.164	0	0	0	0	0
IKZF2	22807	broad.mit.edu	37	2	213872285	213872285	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	IKZF2-226	NM_016260	exon8	c.C1380A	p.V460V	ATTGAAGACCTTG	.	383	9	370	0	.	0	0	0	0	0
DNPEP	23549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220250725	220250725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNPEP-90	NM_012100	exon6	c.C555G	p.I185M	CTCGTTGATATTT	.	260	57	130	0	.	0	0	0	0	0
ASB18	401036	hgsc.bcm.edu	37	2	237123104	237123104	+	Silent	SNP	G	G	C	rs7588748	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ASB18-227	NM_212556	exon4	c.C1002G	p.L334L	GGTCTGGAGCACG	.	39	17	3	0	G|0.754;C|0.246	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	6	6	0	0	G|0.122;C|0.878	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628299	29628299	+	RNA	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FRG1B-22	.	.	.	.	GCAAAAAGTAAAA	.	414	25	505	10	.	0	0	0	0	0
PROCR	10544	broad.mit.edu	37	20	33762727	33762727	+	Missense_Mutation	SNP	G	G	T	rs200377875		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PROCR-226	NM_006404	exon2	c.G293T	p.R98L	TCGTGCGCCTGGT	.	65	9	20	2	.	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	21	12	0	0	C|0.769;T|0.231	0	0	0	0	0
TOP1	7150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39746844	39746844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TOP1-1148	NM_003286	exon18	c.A1858T	p.N620Y	TCTTATAACCGTG	.	351	47	230	0	.	0	0	0	0	0
PLCG1	5335	ucsc.edu;bcgsc.ca	37	20	39794128	39794128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLCG1-911	NM_182811	exon15	c.G1548T	p.K516N	CAGCAAGATCTAC	.	218	44	152	4	.	0	0	0	0	0
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43945172	43945172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RBPJL-227	NM_014276	exon11	c.C1232T	p.A411V	TCCACGCGGGGCT	.	397	25	193	0	.	0	0	0	0	0
ZSWIM3	140831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44505469	44505472	+	Frame_Shift_Del	DEL	TATT	TATT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TATT	TATT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZSWIM3-92	NM_080752	exon2	c.272_275del	p.91_92del	ATAGACTATTTAT	.	194	40	117	0	.	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	5	5	0	0	C|0.999;T|0.001	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	94	9	19	0	A|0.979;G|0.021	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OGFR-68	NM_007346	exon7	c.G1666A	p.E556K	CCAGCCGAGAGCC	.	50	11	1	0	.	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OGFR-68	NM_007346	exon7	c.G1670C	p.S557T	CCGAGAGCCCATC	.	49	11	2	0	.	0	0	0	0	0
RBM11	54033	broad.mit.edu	37	21	15592023	15592023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_144770	exon2	c.C236A	p.P79Q	GAAGACCAATTAA	.	194	6	208	0	.	0	0	0	0	0
SEPT5	5413	hgsc.bcm.edu	37	22	19706305	19706305	+	Silent	SNP	G	G	T	rs187090154	by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SEPT5-636	NM_001009939	exon1	c.G45T	p.L15L	GCAGCTGCTGTCG	.	23	7	0	0	G|0.991;T|0.009	0	0	0	0	0
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21150535	21150535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PI4KA-454	NM_058004	exon18	c.G2176C	p.V726L	CATCCACCAGGTG	.	229	64	192	0	.	0	0	0	0	0
PLA2G3	50487	bcgsc.ca	37	22	31535872	31535872	+	Missense_Mutation	SNP	G	G	C	rs2074735	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLA2G3-226	NM_015715	exon1	c.C469G	p.L157V	ACCACAGTGTGCC	.	78	5	71	0	G|0.733;C|0.267	0	0	0	0	0
PACSIN2	11252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43289603	43289603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PACSIN2-68	NM_007229	exon3	c.G77A	p.R26Q	ACAGTCCGCTTGT	.	191	32	132	0	.	0	0	0	0	0
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9988097	9988097	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PRRT3-90	NM_207351	exon4	c.C2760T	p.R920R	CCCGTGGCGCCAG	.	258	67	126	0	.	0	0	0	0	0
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42799655	42799655	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CCDC13-91	NM_144719	exon2	c.C183T	p.H61H	CCCTGCGTGGAGA	.	129	29	76	0	.	0	0	0	0	0
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45776839	45776839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SACM1L-91	NM_014016	exon14	c.C1213T	p.R405C	TTAGCTCGTCGTT	.	119	35	109	0	.	0	0	0	0	0
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47455478	47455481	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTGT	CTGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SCAP-91	NM_012235	exon23	c.3703_3706del	p.1235_1236del	GGTAGACTGTCTG	.	137	0	103	0	.	0	0	0	0	0
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53844133	53844133	+	Silent	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CACNA1D-100	NM_000720	exon48	c.G6060C	p.L2020L	CCCCCTGATCCAA	.	177	38	128	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	8	8	0	0	G|0.252;C|0.748	0	0	0	0	0
GBE1	2632	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	81627176	81627176	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GBE1-25	NM_000158	exon12	c.G1518T	p.L506L	AGGAGTCAGGACA	.	84	17	95	1	.	0	0	0	0	0
PTPLB	201562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123247281	123247281	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PTPLB-226	NM_198402	exon4	c.G333A	p.V111V	TGACATCACCTGG	.	43	6	83	0	.	0	0	0	0	0
MYLK	4638	bcgsc.ca	37	3	123357037	123357037	+	Silent	SNP	A	A	G	rs820463	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MYLK-365	NM_053025	exon29	c.T4842C	p.N1614N	CCCCGCATTCTCT	.	126	5	158	0	A|0.733;G|0.267	0	0	0	0	0
COL6A5	256076	broad.mit.edu	37	3	130098349	130098349	+	Silent	SNP	G	G	A	rs16845861	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_153264	exon4	c.G756A	p.R252R	TTTAAGGCATCTT	.	95	5	147	0	G|0.633;A|0.367	0	0	0	0	0
ASTE1	28990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130737507	130737507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ASTE1-90	NM_014065	exon4	c.G1356T	p.Q452H	AATGGTCTGTTTC	.	117	12	160	0	.	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	28	13	0	0	G|0.797;A|0.203	0	0	0	0	0
LRRC31	79782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169558017	169558017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRRC31-93	NM_024727	exon9	c.C1412T	p.P471L	AACATGGTCCACC	.	217	24	137	0	.	0	0	0	0	0
HTR3D	200909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183756600	183756600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HTR3D-90	NM_001163646	exon8	c.G1202A	p.G401D	CAGGGGGCTCAGA	.	488	75	280	1	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	72	13	3	0	C|0.960;G|0.040	0	0	0	0	0
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	15	8	0	0	G|0.957;C|0.043	0	0	0	0	0
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6114570	6114570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	JAKMIP1-292	NM_001099433	exon2	c.A8G	p.K3R	CCTTTCTTCGACA	.	85	27	60	0	.	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	10	10	0	0	A|0.036;G|0.964	0	0	0	0	0
SEL1L3	23231	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25760664	25760664	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_015187	exon21	c.C2982T	p.I994I	TTCCTCGATTAGC	.	79	37	78	1	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	10	10	0	0	G|0.025;C|0.975	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	10	6	1	0	T|0.691;C|0.309	0	0	0	0	0
ALPK1	80216	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113352657	113352657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ALPK1-337	NM_001102406	exon11	c.G1954A	p.E652K	CTTCAGGAACCCA	.	116	17	124	1	.	0	0	0	0	0
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128628123	128628123	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	INTU-91	NM_015693	exon12	c.A2270T	p.K757M	TGCTTAAGGTGTG	.	127	17	151	0	.	0	0	0	0	0
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134072249	134072249	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDH10-92	NM_032961	exon1	c.T954C	p.Y318Y	GGACTATGAAGAG	.	156	40	123	0	.	0	0	0	0	0
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	147830303	147830303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TTC29-90	NM_031956	exon5	c.A275C	p.D92A	AGGGCATCCCACC	.	49	10	57	0	.	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	9	6	0	0	C|0.454;G|0.546	0	0	0	0	0
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38418285	38418285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	EGFLAM-187	NM_001205301	exon12	c.C1612T	p.L538F	CAGTCGCTCGCTG	.	205	35	152	2	.	0	0	0	0	0
NAIP	4671	broad.mit.edu;bcgsc.ca	37	5	70308258	70308258	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NAIP-205	NM_004536	exon4	c.G485C	p.R162T	GCAAGTCTAGCCT	.	204	6	120	0	.	0	0	0	0	0
HMGCR	3156	broad.mit.edu;bcgsc.ca	37	5	74639696	74639698	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HMGCR-227	NM_001130996	exon3	c.184_186del	p.62_62del	AGTGACATTATAA	.	295	38	278	0	.	0	0	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	90055402	90055402	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPR98-103	NM_032119	exon58	c.G12117C	p.K4039N	AGAAAAGACTGTA	.	108	8	90	0	.	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	5	5	0	0	T|0.046;G|0.950	0	0	0	0	0
ST8SIA4	7903	hgsc.bcm.edu	37	5	100147798	100147798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ST8SIA4-153	NM_005668	exon5	c.C833A	p.P278H	GTGCTGGGTCTTT	.	87	5	51	0	.	0	0	0	0	0
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121487769	121487769	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF474-90	NM_207317	exon2	c.C84G	p.N28K	TATCAACCAAGCT	.	92	20	94	0	.	0	0	0	0	0
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129241282	129241282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CHSY3-25	NM_175856	exon1	c.T760C	p.Y254H	GACAAGTATGAGT	.	276	39	148	0	.	0	0	0	0	0
PCDHA8	56140	broad.mit.edu;bcgsc.ca	37	5	140221852	140221852	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHA8-92	NM_031856	exon1	c.946delT	p.Y316fs	AACTTATACAAAA	.	476	66	435	0	.	0	0	0	0	0
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140255507	140255507	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_018903	exon1	c.T450A	p.S150S	GGACTCTCATTTT	.	197	38	148	0	.	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	87	23	2	0	.	0	0	0	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574170	140574175	+	In_Frame_Del	DEL	AGGCCG	AGGCCG	-	rs58244182	bycluster;alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHB10-92	NM_018930	exon1	c.2045_2050del	p.682_684del	AGGCCCAGGCCGA	.	93	15	9	0	-|0.750;GGCCGA|0.250	0	0	0	0	0
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140594583	140594583	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHB13-93	NM_018933	exon1	c.T888C	p.N296N	GATCAATCCCTTG	.	194	48	228	1	.	0	0	0	0	0
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140774156	140774156	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_014004	exon1	c.G1776A	p.V592V	GGTGGTGGCGGTG	.	353	64	84	0	.	0	0	0	0	0
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140799544	140799544	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHGB7-29	NM_018927	exon1	c.G2118A	p.A706A	CCTCGCGGTGATT	.	202	32	142	0	.	0	0	0	0	0
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	143853595	143853595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KCTD16-137	NM_020768	exon4	c.T1205C	p.F402S	AGGATTTCCTAAA	.	118	8	133	0	.	0	0	0	0	0
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147820759	147820759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FBXO38-231	NM_030793	exon21	c.C3122G	p.P1041R	CAGAGCCCAACAG	.	133	18	131	0	.	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	6	6	0	0	G|0.585;C|0.415	0	0	0	0	0
UNC5A	90249	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176305481	176305481	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UNC5A-91	NM_133369	exon13	c.C2025G	p.I675M	GGAGATCCCCTTT	.	377	57	201	0	.	0	0	0	0	0
DBN1	1627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176885468	176885468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DBN1-587	NM_080881	exon13	c.A1373C	p.D458A	GCAGTGTCAGTTT	.	688	135	292	3	.	0	0	0	0	0
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176894041	176894041	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DBN1-587	NM_080881	exon8	c.A584C	p.E195A	TCCTCCTCCTTCC	.	95	8	34	0	.	0	0	0	0	0
FOXQ1	94234	hgsc.bcm.edu	37	6	1313117	1313117	+	Missense_Mutation	SNP	A	A	C	rs9502889		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FOXQ1-226	NM_033260	exon1	c.A178C	p.T60P	AGAGATACGCAGG	.	7	7	0	0	A|0.161;C|0.839	0	0	0	0	0
FOXQ1	94234	hgsc.bcm.edu	37	6	1313121	1313121	+	Missense_Mutation	SNP	A	A	C	rs9502890		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FOXQ1-226	NM_033260	exon1	c.A182C	p.Q61P	ATACGCAGGGCGA	.	7	7	0	0	A|0.173;C|0.827	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	5	5	0	0	G|0.000;C|1.000	0	0	0	0	0
GPANK1	7918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31630170	31630170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPANK1-91	NM_001199238	exon4	c.G944A	p.R315Q	ACAGCTCGGGTAT	.	210	32	92	0	.	0	0	0	0	0
STK19	8859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31940267	31940267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	STK19-336	NM_032454	exon2	c.G409C	p.D137H	GAGTCGGATCCTC	.	38	8	44	0	.	0	0	0	0	0
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33651116	33651116	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ITPR3-1085	NM_002224	exon35	c.C4730G	p.P1577R	CCTTCCCCCGCGT	.	226	64	132	1	.	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	10	6	0	0	C|0.673;A|0.327	0	0	0	0	0
CENPQ	55166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49456158	49456158	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CENPQ-92	NM_018132	exon7	c.G571T	p.E191X	GAGGTGGAAGAAG	.	176	31	228	0	.	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56391195	56391195	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DST-523	NM_015548	exon50	c.G10224T	p.V3408V	CTCCTCCACCTTC	.	149	38	162	0	.	0	0	0	0	0
PHF3	23469	broad.mit.edu	37	6	64422984	64422984	+	Missense_Mutation	SNP	C	C	T	rs3734881	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PHF3-229	NM_015153	exon15	c.C5500T	p.H1834Y	CCACCACATTTGC	.	26	3	43	0	C|0.995;T|0.005	0	0	0	0	0
RAET1G	353091	bcgsc.ca	37	6	150240829	150240829	+	Missense_Mutation	SNP	G	G	C	rs9397449	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RAET1G-90	NM_001001788	exon2	c.C209G	p.T70R	GTGACTGTCTTGC	.	604	16	593	7	G|0.807;C|0.193	0	0	0	0	0
SYTL3	94120	bcgsc.ca	37	6	159178345	159178345	+	Missense_Mutation	SNP	C	C	T	rs901363	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SYTL3-90	NM_001242384	exon15	c.C1240T	p.P414S	ATCATTCCTCTGG	.	121	7	105	0	C|0.605;T|0.395	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	17	5	0	0	G|0.456;C|0.544	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	19	19	0	0	C|0.329;G|0.671	0	0	0	0	0
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	36436004	36436006	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CAG	CAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ANLN-517	NM_018685	exon2	c.148_150del	p.50_50del	AGTAACCAGCAGC	.	103	25	142	0	.	0	0	0	0	0
GLI3	2737	broad.mit.edu;bcgsc.ca	37	7	42005406	42005406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GLI3-1149	NM_000168	exon15	c.G3265A	p.E1089K	AATCCTCATCGTT	.	307	11	215	0	.	0	0	0	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	rs929387	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GLI3-1149	NM_000168	exon15	c.C2993T	p.P998L	TGGCCCGGCGCAT	.	5	4	0	0	G|0.565;A|0.435	0	0	0	0	0
WBSCR22	114049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	73101340	73101340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	WBSCR22-90	NM_001202560	exon5	c.G277C	p.D93H	GCTGTGGACCGAG	.	80	4	61	0	.	0	0	0	0	0
TFPI2	7980	bcgsc.ca	37	7	93518486	93518486	+	Silent	SNP	C	C	T	rs34489123	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TFPI2-515	NM_006528	exon3	c.G321A	p.E107E	GGACCCCTCACAC	.	89	6	110	0	C|0.942;T|0.058	0	0	0	0	0
AP1S1	1174	broad.mit.edu	37	7	100800053	100800053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AP1S1-226	NM_001283	exon2	c.G182C	p.R61T	ATAAGAGGTGACT	.	29	3	25	0	.	0	0	0	0	0
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	112724050	112724050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPR85-91	NM_001146265	exon3	c.T727C	p.W243R	CTAGCCAATTGGC	.	102	7	99	0	.	0	0	0	0	0
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	119915231	119915231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KCND2-517	NM_012281	exon1	c.C545T	p.T182M	CCAGCACGATGGC	.	122	27	141	0	.	0	0	0	0	0
GPR124	25960	broad.mit.edu	37	8	37686785	37686785	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPR124-157	NM_032777	exon4	c.C417T	p.L139L	AGATCTCTCCAAC	.	79	17	57	2	.	0	0	0	0	0
TGS1	96764	bcgsc.ca	37	8	56705325	56705325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TGS1-227	NM_024831	exon6	c.A1349T	p.K450M	GATTCAAGTATGG	.	55	4	60	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	27	9	0	0	A|0.118;G|0.882	0	0	0	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649625	144649625	+	Silent	SNP	T	T	C	rs10097556		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001100878	exon14	c.A1944G	p.R648R	CTGCAGTCGCCCT	.	8	8	0	0	T|0.058;C|0.942	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	35	11	1	0	C|0.707;T|0.293	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	23	5	0	0	G|0.246;A|0.754	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	10	10	0	0	G|0.992;C|0.006	0	0	0	0	0
TPD52L3	89882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	6328653	6328653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TPD52L3-68	NM_033516	exon1	c.G58C	p.E20Q	ACTTCTGAACTGG	.	85	15	83	0	.	0	0	0	0	0
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	79933239	79933241	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTA	CTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	VPS13A-161	NM_001018038	exon41	c.5045_5047del	p.1682_1683del	CTTCTTCTACTGC	.	126	21	149	0	.	0	0	0	0	0
UBQLN1	29979	broad.mit.edu;bcgsc.ca	37	9	86294747	86294747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UBQLN1-90	NM_053067	exon4	c.G654C	p.L218F	CTGTATCAACTGC	.	134	8	153	1	.	0	0	0	0	0
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86616405	86616405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RMI1-90	NM_024945	exon3	c.G504C	p.L168F	AATTTTGATTTAT	.	52	7	57	0	.	0	0	0	0	0
FAM120A	23196	broad.mit.edu;ucsc.edu	37	9	96318860	96318860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM120A-90	NM_014612	exon13	c.T2471C	p.L824P	TTGACCTCTGTGA	.	75	9	62	1	.	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113169657	113169657	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SVEP1-75	NM_153366	exon38	c.T8223C	p.Y2741Y	ACAGCTATACTGC	.	177	29	118	0	.	0	0	0	0	0
FPGS	2356	broad.mit.edu;bcgsc.ca	37	9	130572350	130572350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FPGS-90	NM_004957	exon13	c.G1252A	p.D418N	ACCGGGGACCGGG	.	275	57	114	1	.	0	0	0	0	0
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137704528	137704528	+	Silent	SNP	A	A	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	COL5A1-524	NM_000093	exon48	c.A3822T	p.G1274G	AGGTGGAATAGGA	.	131	33	91	1	.	0	0	0	0	0
NOXA1	10811	hgsc.bcm.edu	37	9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	rs112864733		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	14	4	0	0	C|0.934;G|0.066	0	0	0	0	0
VCX	26609	bcgsc.ca	37	X	7811812	7811812	+	Missense_Mutation	SNP	C	C	G	rs144779201	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	VCX-22	NM_013452	exon3	c.C376G	p.Q126E	CTGAGTCAGGAGA	.	147	7	200	0	C|0.996;G|0.004	0	0	0	0	0
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	75003782	75003782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MAGEE2-132	NM_138703	exon1	c.A1105C	p.I369L	CCTCAATCAGAGA	.	53	11	79	0	.	0	0	0	0	0
VSIG1	340547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107320488	107320488	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	VSIG1-132	NM_001170553	exon8	c.G1149C	p.E383D	CATCGAGCTGGAG	.	112	36	176	0	.	0	0	0	0	0
RHOXF1	158800	broad.mit.edu;ucsc.edu	37	X	119249707	119249707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RHOXF1-130	NM_139282	exon1	c.C66A	p.S22R	TGTGGGGCTTATT	.	41	5	36	0	.	0	0	0	0	0
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu	37	X	125685583	125685583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DCAF12L1-132	NM_178470	exon1	c.G1009A	p.D337N	GCTGGTCCTGGCG	.	180	11	223	0	.	0	0	0	0	0
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	125685622	125685622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DCAF12L1-132	NM_178470	exon1	c.G970A	p.G324S	GGGAGCCCACGGC	.	268	18	285	0	.	0	0	0	0	0
GPC3	2719	hgsc.bcm.edu;bcgsc.ca	37	X	132730533	132730535	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPC3-847	NM_001164617	exon8	c.1575_1577del	p.525_526del	CACTCATCTTCAT	.	269	62	396	1	.	0	0	0	0	0
PLXNA3	55558	broad.mit.edu	37	X	153689643	153689643	+	Missense_Mutation	SNP	G	G	A	rs145244142	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLXNA3-132	NM_017514	exon3	c.G799A	p.A267T	ATGTGCGCGGGAG	.	233	6	85	0	G|0.999;A|0.001	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CELSR2-526	NM_001408	exon1	c.34_35insCGC	p.T12delinsTP	CTCCCAACGCCGC	.	20	19	3	2	-|0.389;CGC|0.611	0	0	0	0	0
CRTC1	23373	broad.mit.edu	37	19	18856713	18856714	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CRTC1-1361	NM_001098482	exon4	c.372_373insG	p.R124fs	GGAGCGTGGCCGG	.	351	10	66	0	.	0	0	0	0	0
LYPD5	284348	broad.mit.edu	37	19	44302693	44302694	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LYPD5-90	NM_001031749	exon4	c.431_432insGG	p.D144fs	CAGTCATCCTGGT	.	95	11	45	0	.	0	0	0	0	0
SBK2	646643	hgsc.bcm.edu	37	19	56041209	56041210	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SBK2-68	NM_001101401	exon4	c.938_939insC	p.R313fs	CTCCTTCGGGGGT	.	58	19	8	2	.	0	0	0	0	0
NFIA	4774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	61554105	61554106	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NFIA-92	NM_001145512	exon3	c.C448T	p.L150F	TGTGTTCTTTCCA	.	143	0	198	0	.	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	100	7	35	0	.	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu	37	7	149476671	149476672	+	Silent	DNP	TG	TG	CT	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_198455	exon10	c.G1122T	.	GCCCCTGGGGCTC	.	313	0	180	0	.	0	0	0	0	0
