Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ASNSD1	54529	genome.wustl.edu	37	2	190531908	190531910	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	2	190531908	190531910	TCT	-	DEL	ASNSD1	ENST00000260952	human	ensembl	70_37	+1	known	in_frame_del	c.1050_1052	p.L352in_frame_del	1.000:1.000:1.000	pfam_Asn_synthase	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC
ATP13A5	344905	genome.wustl.edu	37	3	193096463	193096463	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	3	193096463	193096463	C	A	SNP	ATP13A5	ENST00000342358	human	ensembl	70_37	-1	known	nonsense	c.52	p.E18*	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A5	HGNC
BRD3	8019	genome.wustl.edu	37	9	136913301	136913301	+	Silent	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	9	136913301	136913301	G	A	SNP	BRD3	ENST00000303407	human	ensembl	70_37	-1	known	silent	c.990	p.Y330	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD3	HGNC
BTBD1	53339	genome.wustl.edu	37	15	83718834	83718834	+	Missense_Mutation	SNP	T	T	C			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	15	83718834	83718834	T	C	SNP	BTBD1	ENST00000261721	human	ensembl	70_37	-1	known	missense	c.655	p.I219V	1.000	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC
CALM3	808	genome.wustl.edu	37	19	47112431	47112431	+	RNA	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	19	47112431	47112431	G	A	SNP	CALM3	ENST00000477244	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.793	-	-	-	no_errors	CALM3	HGNC
CILP2	148113	genome.wustl.edu	37	19	19654947	19654947	+	Silent	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	19	19654947	19654947	C	T	SNP	CILP2	ENST00000291495	human	ensembl	70_37	+1	known	silent	c.1593	p.F531	0.988	superfamily_Carb-bd-like_fold	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP2	HGNC
CSMD1	64478	genome.wustl.edu	37	8	3047499	3047499	+	Missense_Mutation	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	8	3047499	3047499	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	70_37	-1	known	missense	c.5336	p.A1779V	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC
CTIF	9811	genome.wustl.edu	37	18	46066203	46066203	+	Splice_Site	SNP	G	G	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	18	46066203	46066203	G	T	SNP	CTIF	ENST00000382998	human	ensembl	70_37	+1	known	splice_site	c.1+1	e0+1	0.999	-	-	-	no_errors	CTIF	HGNC
PBDC1	51260	genome.wustl.edu	37	X	75397718	75397718	+	Missense_Mutation	SNP	A	A	G			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	X	75397718	75397718	A	G	SNP	CXorf26	ENST00000373358	human	ensembl	70_37	+1	known	missense	c.677	p.N226S	0.000	NULL	pfam_Put_polysacc_synth	-	no_errors	CXorf26	HGNC
DBC1	0	genome.wustl.edu	37	9	122011392	122011392	+	Silent	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	9	122011392	122011392	G	A	SNP	DBC1	ENST00000265922	human	ensembl	70_37	-1	known	silent	c.255	p.I85	0.905	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC
DLG1	1739	genome.wustl.edu	37	3	196876613	196876613	+	Splice_Site	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	3	196876613	196876613	C	T	SNP	DLG1	ENST00000346964	human	ensembl	70_37	-1	known	splice_site	c.636+1	e6+1	1.000	-	-	-	no_errors	DLG1	HGNC
DNAH11	8701	genome.wustl.edu	37	7	21742379	21742379	+	Missense_Mutation	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	7	21742379	21742379	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	70_37	+1	known	missense	c.6253	p.G2085R	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC
ENSG00000214432	0	genome.wustl.edu	37	15	91578166	91578166	+	RNA	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	15	91578166	91578166	C	T	SNP	ENSG00000214432	ENST00000557804	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC068831.10	Clone_based_vega_gene
FAM178B	51252	genome.wustl.edu	37	2	97637863	97637863	+	Silent	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	2	97637863	97637863	C	T	SNP	FAM178B	ENST00000417561	human	ensembl	70_37	-1	known	silent	c.783	p.P261	0.589	NULL	NULL	-	no_errors	FAM178B	HGNC
FAM5B	57795	genome.wustl.edu	37	1	177250921	177250921	+	RNA	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	177250921	177250921	G	A	SNP	FAM5B	ENST00000478325	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	FAM5B	HGNC
FAM5C	339479	genome.wustl.edu	37	1	190233994	190233994	+	Splice_Site	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	190233994	190233994	C	T	SNP	FAM5C	ENST00000367462	human	ensembl	70_37	-1	known	splice_site	c.618+1	e3+1	1.000	-	-	-	no_errors	FAM5C	HGNC
GPR98	84059	genome.wustl.edu	37	5	90445962	90445962	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	5	90445962	90445962	C	T	SNP	GPR98	ENST00000405460	human	ensembl	70_37	+1	known	missense	c.18548	p.T6183M	0.996	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC
HERC2	8924	genome.wustl.edu	37	15	28443555	28443555	+	Silent	SNP	A	A	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	15	28443555	28443555	A	T	SNP	HERC2	ENST00000261609	human	ensembl	70_37	-1	known	silent	c.7980	p.S2660	0.834	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC
HS6ST1	9394	genome.wustl.edu	37	2	129075877	129075877	+	Missense_Mutation	SNP	G	G	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	2	129075877	129075877	G	T	SNP	HS6ST1	ENST00000259241	human	ensembl	70_37	-1	known	missense	c.261	p.D87E	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC
IGFN1	91156	genome.wustl.edu	37	1	201177598	201177598	+	Missense_Mutation	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	201177598	201177598	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	70_37	+1	known	missense	c.3577	p.A1193T	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC
IL6ST	3572	genome.wustl.edu	37	5	55264184	55264184	+	Silent	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	5	55264184	55264184	G	A	SNP	IL6ST	ENST00000336909	human	ensembl	70_37	-1	known	silent	c.411	p.N137	0.457	pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL6_recept-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC
KIAA2018	205717	genome.wustl.edu	37	3	113376116	113376116	+	Silent	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	3	113376116	113376116	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	70_37	-1	known	silent	c.4413	p.Q1471	1.000	NULL	pfam_HLH_dom,superfamily_HLH_dom,smart_HLH_dom,pfscan_HLH_dom	-	no_errors	KIAA2018	HGNC
KIF1A	547	genome.wustl.edu	37	2	241700168	241700168	+	Silent	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	2	241700168	241700168	C	T	SNP	KIF1A	ENST00000498729	human	ensembl	70_37	-1	known	silent	c.2358	p.T786	0.776	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC
LRRC1	55227	genome.wustl.edu	37	6	53784278	53784278	+	RNA	SNP	A	A	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	6	53784278	53784278	A	T	SNP	LRRC1	ENST00000490222	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LRRC1	HGNC
MIR520D	574482	genome.wustl.edu	37	19	54223419	54223419	+	RNA	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	19	54223419	54223419	G	A	SNP	MIR520D	ENST00000385002	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.251	-	-	-	no_errors	MIR520D	HGNC
MYB	4602	genome.wustl.edu	37	6	135539519	135539519	+	RNA	DEL	C	C	-			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	6	135539519	135539519	C	-	DEL	MYB	ENST00000531845	human	ensembl	70_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MYB	HGNC
NPIPB7	440350	genome.wustl.edu	37	16	28481749	28481749	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	16	28481749	28481749	C	T	SNP	NPIPL1	ENST00000452313	human	ensembl	70_37	-1	novel	missense	c.11	p.R4H	0.010	NULL	pfam_NPIP	-	no_errors	NPIPL1	HGNC
OR2G3	81469	genome.wustl.edu	37	1	247768978	247768978	+	Missense_Mutation	SNP	G	G	C			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	247768978	247768978	G	C	SNP	OR2G3	ENST00000320002	human	ensembl	70_37	+1	known	missense	c.91	p.V31L	0.003	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC
PABPC3	5042	genome.wustl.edu	37	13	25671667	25671667	+	Missense_Mutation	SNP	A	A	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	13	25671667	25671667	A	T	SNP	PABPC3	ENST00000281589	human	ensembl	70_37	+1	known	missense	c.1331	p.K444M	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC
PCDHB18	54660	genome.wustl.edu	37	5	140615760	140615760	+	RNA	SNP	T	T	C			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	5	140615760	140615760	T	C	SNP	PCDHB18	ENST00000526308	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.326	-	-	-	no_errors	PCDHB18	HGNC
RAD51AP1	10635	genome.wustl.edu	37	12	4668038	4668038	+	Missense_Mutation	SNP	G	G	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	12	4668038	4668038	G	A	SNP	RAD51AP1	ENST00000228843	human	ensembl	70_37	+1	known	missense	c.938	p.S313N	0.884	NULL	NULL	-	no_errors	RAD51AP1	HGNC
RALGAPA1	253959	genome.wustl.edu	37	14	36008548	36008549	+	RNA	INS	-	-	A			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	14	36008548	36008549	-	A	INS	RALGAPA1	ENST00000556106	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	RALGAPA1	HGNC
RARG	5916	genome.wustl.edu	37	12	53605639	53605639	+	Missense_Mutation	SNP	T	T	C			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	12	53605639	53605639	T	C	SNP	RARG	ENST00000394426	human	ensembl	70_37	-1	known	missense	c.1186	p.R396G	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Retinoic_acid_rcpt,prints_Nuc_orph_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARG	HGNC
REV3L	5980	genome.wustl.edu	37	6	111620606	111620608	+	RNA	DEL	AAA	AAA	-			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	6	111620606	111620608	AAA	-	DEL	REV3L	ENST00000462119	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.997:1.000:1.000	-	-	-	no_errors	REV3L	HGNC
RUNX2	860	genome.wustl.edu	37	6	45480078	45480079	+	Frame_Shift_Ins	INS	-	-	C			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	6	45480078	45480079	-	C	INS	RUNX2	ENST00000352853	human	ensembl	70_37	+1	known	frame_shift_ins	c.1159_1160	p.L389fs	1.000:1.000	NULL	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX2	HGNC
S100A4	6275	genome.wustl.edu	37	1	153516163	153516163	+	RNA	DEL	A	A	-			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	153516163	153516163	A	-	DEL	S100A4	ENST00000468373	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	S100A4	HGNC
SLAMF6	114836	genome.wustl.edu	37	1	160466129	160466129	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	160466129	160466129	C	T	SNP	SLAMF6	ENST00000368057	human	ensembl	70_37	-1	known	missense	c.104	p.G35E	0.003	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SLAMF6	HGNC
SNTB1	6641	genome.wustl.edu	37	8	121583520	121583520	+	RNA	SNP	G	G	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	8	121583520	121583520	G	T	SNP	SNTB1	ENST00000519177	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNTB1	HGNC
SPHKAP	80309	genome.wustl.edu	37	2	228883398	228883398	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	2	228883398	228883398	C	T	SNP	SPHKAP	ENST00000392056	human	ensembl	70_37	-1	known	missense	c.2172	p.M724I	0.989	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC
TPO	7173	genome.wustl.edu	37	2	1491726	1491726	+	Silent	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	2	1491726	1491726	C	T	SNP	TPO	ENST00000329066	human	ensembl	70_37	+1	known	silent	c.1731	p.S577	0.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC
TRIP10	9322	genome.wustl.edu	37	19	6750600	6750600	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	19	6750600	6750600	C	T	SNP	TRIP10	ENST00000313244	human	ensembl	70_37	+1	known	missense	c.1613	p.P538L	0.186	superfamily_SH3_domain	pfam_FCH,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC
TSC2	7249	genome.wustl.edu	37	16	2121565	2121565	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	16	2121565	2121565	C	T	SNP	TSC2	ENST00000219476	human	ensembl	70_37	+1	known	missense	c.1894	p.P632S	1.000	pfam_Tuberin-type_domain	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP,prints_Tuberin	-	no_errors	TSC2	HGNC
TTC39A	22996	genome.wustl.edu	37	1	51767913	51767913	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	51767913	51767913	C	-	DEL	TTC39A	ENST00000262676	human	ensembl	70_37	-1	known	frame_shift_del	c.1103	p.G368fs	0.000	NULL	pfam_OMP_IML2_mit/TPR_39	-	no_errors	TTC39A	HGNC
TTN	7273	genome.wustl.edu	37	2	179659227	179659227	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	2	179659227	179659227	C	T	SNP	TTN	ENST00000342992	human	ensembl	70_37	-1	known	missense	c.1297	p.V433I	0.999	pfam_Titin_Z,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC
TXNIP	10628	genome.wustl.edu	37	1	145440399	145440402	+	Frame_Shift_Del	DEL	ATCA	ATCA	-			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	ATCA	ATCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	145440399	145440402	ATCA	-	DEL	TXNIP	ENST00000369317	human	ensembl	70_37	+1	known	frame_shift_del	c.705_708	p.V237fs	0.699:0.919:0.919:0.052	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	TXNIP	HGNC
ZNF45	7596	genome.wustl.edu	37	19	44418081	44418081	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	19	44418081	44418081	C	T	SNP	ZNF45	ENST00000269973	human	ensembl	70_37	-1	known	missense	c.1507	p.E503K	0.023	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF45	HGNC
ZNF648	127665	genome.wustl.edu	37	1	182025942	182025942	+	Missense_Mutation	SNP	C	C	T			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	1	182025942	182025942	C	T	SNP	ZNF648	ENST00000339948	human	ensembl	70_37	-1	known	missense	c.1204	p.A402T	0.336	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC
ZNF814	730051	genome.wustl.edu	37	19	58385873	58385873	+	Silent	SNP	T	T	C			TCGA-DS-A3LQ-01A-21D-A21Q-09	TCGA-DS-A3LQ-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e2b50946-df37-45fb-b26c-236b264da1fc	be684ac0-dfad-48b1-a133-e2e5873099b4	19	58385873	58385873	T	C	SNP	ZNF814	ENST00000435989	human	ensembl	70_37	-1	known	silent	c.885	p.K295	0.002	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC
