Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ANAPC15	25906	genome.wustl.edu	37	11	71818495	71818495	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	11	71818495	71818495	G	A	SNP	ANAPC15	ENST00000543050	human	ensembl	70_37	-1	putative	nonsense	c.475	p.Q159*	0.001	NULL	NULL	-	no_errors	ANAPC15	HGNC
CDH23-AS1	414246	genome.wustl.edu	37	10	73269694	73269694	+	RNA	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	10	73269694	73269694	G	A	SNP	CDH23-AS1	ENST00000428918	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDH23-AS1	HGNC
CNOT2	4848	genome.wustl.edu	37	12	70729334	70729334	+	Missense_Mutation	SNP	G	G	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	12	70729334	70729334	G	T	SNP	CNOT2	ENST00000229195	human	ensembl	70_37	+1	known	missense	c.766	p.A256S	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC
DCAF12L1	139170	genome.wustl.edu	37	X	125686155	125686155	+	Missense_Mutation	SNP	T	T	C			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	X	125686155	125686155	T	C	SNP	DCAF12L1	ENST00000371126	human	ensembl	70_37	-1	known	missense	c.437	p.D146G	0.001	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC
DIP2B	57609	genome.wustl.edu	37	12	51138529	51138529	+	Silent	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	12	51138529	51138529	G	A	SNP	DIP2B	ENST00000301180	human	ensembl	70_37	+1	known	silent	c.4638	p.P1546	0.734	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC
ENSG00000205233	0	genome.wustl.edu	37	7	102313428	102313428	+	Silent	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	7	102313428	102313428	G	A	SNP	ENSG00000205233	ENST00000542270	human	ensembl	70_37	-1	known	silent	c.381	p.P127	0.000	NULL	NULL	-	no_errors	AC105052.1	Clone_based_ensembl_gene
ENSG00000227781	0	genome.wustl.edu	37	10	48968566	48968566	+	RNA	SNP	A	A	G			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	10	48968566	48968566	A	G	SNP	ENSG00000227781	ENST00000438010	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	GLUDP2	Clone_based_vega_gene
EPHA3	2042	genome.wustl.edu	37	3	89391151	89391151	+	Missense_Mutation	SNP	C	C	G			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	3	89391151	89391151	C	G	SNP	EPHA3	ENST00000336596	human	ensembl	70_37	+1	known	missense	c.1217	p.T406S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA3	HGNC
FAT3	120114	genome.wustl.edu	37	11	92532414	92532414	+	Missense_Mutation	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	11	92532414	92532414	G	A	SNP	FAT3	ENST00000298047	human	ensembl	70_37	+1	known	missense	c.6235	p.D2079N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC
FREM3	166752	genome.wustl.edu	37	4	144617512	144617512	+	Silent	SNP	A	A	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	4	144617512	144617512	A	T	SNP	FREM3	ENST00000329798	human	ensembl	70_37	-1	putative	silent	c.4317	p.G1439	0.023	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM3	HGNC
GABRB3	2562	genome.wustl.edu	37	15	26806135	26806135	+	Missense_Mutation	SNP	G	G	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	15	26806135	26806135	G	T	SNP	GABRB3	ENST00000299267	human	ensembl	70_37	-1	known	missense	c.1024	p.L342I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC
HIVEP1	3096	genome.wustl.edu	37	6	12164277	12164277	+	Silent	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	6	12164277	12164277	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	70_37	+1	known	silent	c.7740	p.E2580	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC
KDR	3791	genome.wustl.edu	37	4	55973990	55973990	+	Silent	SNP	C	C	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	4	55973990	55973990	C	T	SNP	KDR	ENST00000263923	human	ensembl	70_37	-1	known	silent	c.1326	p.T442	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR2_rcpt,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	KDR	HGNC
MAP3K9	4293	genome.wustl.edu	37	14	71197432	71197432	+	Missense_Mutation	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	14	71197432	71197432	G	A	SNP	MAP3K9	ENST00000555993	human	ensembl	70_37	-1	known	missense	c.3022	p.R1008W	0.953	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K9	HGNC
MAPK1	5594	genome.wustl.edu	37	22	22127164	22127164	+	Missense_Mutation	SNP	C	C	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	22	22127164	22127164	C	T	SNP	MAPK1	ENST00000215832	human	ensembl	70_37	-1	known	missense	c.964	p.E322K	1.000	superfamily_Kinase-like_dom,prints_MAPK_ERK1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK1/2,prints_MAPK_ERK3/4	-	no_errors	MAPK1	HGNC
MGC21881	0	genome.wustl.edu	37	9	66553736	66553736	+	RNA	SNP	C	C	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	9	66553736	66553736	C	T	SNP	MGC21881	ENST00000305709	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.118	-	-	-	no_errors	RP11-262H14.4	Clone_based_vega_gene
MIR4485	100616263	genome.wustl.edu	37	MT	3179	3179	+	RNA	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	MT	3179	3179	G	A	SNP	MIR4485	ENST00000387347	human	ensembl	70_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MIR4485	HGNC
MYO15A	51168	genome.wustl.edu	37	17	18067132	18067132	+	Missense_Mutation	SNP	T	T	C			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	17	18067132	18067132	T	C	SNP	MYO15A	ENST00000205890	human	ensembl	70_37	+1	known	missense	c.9767	p.I3256T	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC
NBPF1	55672	genome.wustl.edu	37	1	16889985	16889985	+	RNA	SNP	T	T	C			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	1	16889985	16889985	T	C	SNP	NBPF1	ENST00000401007	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	NBPF1	HGNC
NDST3	9348	genome.wustl.edu	37	4	119163280	119163280	+	Missense_Mutation	SNP	A	A	G			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	4	119163280	119163280	A	G	SNP	NDST3	ENST00000296499	human	ensembl	70_37	+1	known	missense	c.2375	p.H792R	1.000	pfam_Sulfotransferase_dom	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom	-	no_errors	NDST3	HGNC
NOTCH3	4854	genome.wustl.edu	37	19	15299079	15299079	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	19	15299079	15299079	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	70_37	-1	known	nonsense	c.1459	p.R487*	0.967	pfam_EG-like_dom,smart_EGF-like_Ca-bd,smart_EG-like_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC
PTPRE	5791	genome.wustl.edu	37	10	129883836	129883836	+	RNA	SNP	C	C	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	10	129883836	129883836	C	T	SNP	PTPRE	ENST00000479896	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.929	-	-	-	no_errors	PTPRE	HGNC
RBFOX1	54715	genome.wustl.edu	37	16	7629836	7629836	+	Missense_Mutation	SNP	A	A	G			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	16	7629836	7629836	A	G	SNP	RBFOX1	ENST00000547372	human	ensembl	70_37	+1	known	missense	c.457	p.T153A	1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC
RBM27	54439	genome.wustl.edu	37	5	145665548	145665548	+	Silent	SNP	C	C	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	5	145665548	145665548	C	T	SNP	RBM27	ENST00000265271	human	ensembl	70_37	+1	known	silent	c.3138	p.D1046	0.855	NULL	pfam_PWI,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC
SEMA5B	54437	genome.wustl.edu	37	3	122641210	122641210	+	Missense_Mutation	SNP	C	C	T			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	3	122641210	122641210	C	T	SNP	SEMA5B	ENST00000451055	human	ensembl	70_37	-1	known	missense	c.1519	p.E507K	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC
SKOR1	390598	genome.wustl.edu	37	15	68125560	68125560	+	Missense_Mutation	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	15	68125560	68125560	G	A	SNP	SKOR1	ENST00000380035	human	ensembl	70_37	+1	known	missense	c.2768	p.R923Q	1.000	NULL	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC
SPATA31E1	286234	genome.wustl.edu	37	9	90502270	90502270	+	Missense_Mutation	SNP	G	G	C			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	9	90502270	90502270	G	C	SNP	SPATA31E1	ENST00000325643	human	ensembl	70_37	+1	known	missense	c.2868	p.R956S	0.001	NULL	NULL	-	no_errors	SPATA31E1	HGNC
TNS1	7145	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	2	218712887	218712889	GCT	-	DEL	TNS1	ENST00000171887	human	ensembl	70_37	-1	known	in_frame_del	c.1978_1976	p.Q659in_frame_del	1.000:1.000:0.994	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC
USP43	124739	genome.wustl.edu	37	17	9615324	9615324	+	Missense_Mutation	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	17	9615324	9615324	G	A	SNP	USP43	ENST00000285199	human	ensembl	70_37	+1	known	missense	c.2210	p.R737Q	0.998	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP43	HGNC
VPS52	6293	genome.wustl.edu	37	6	33239435	33239435	+	Silent	SNP	G	G	A			TCGA-EA-A5ZD-01A-11D-A28B-09	TCGA-EA-A5ZD-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fd39abc-ea1a-42b8-8cc1-90ec3de41c86	b8a74f15-4ec7-45dd-809b-4460c734ee33	6	33239435	33239435	G	A	SNP	VPS52	ENST00000445902	human	ensembl	70_37	-1	known	silent	c.18	p.T6	0.995	NULL	pfam_Vps52,pfam_Exocyst_Exoc1	-	no_errors	VPS52	HGNC
