Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ACSM2A	123876	genome.wustl.edu	37	16	20481025	20481025	+	Missense_Mutation	SNP	T	T	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	16	20481025	20481025	T	A	SNP	ACSM2A	ENST00000219054	human	ensembl	70_37	+1	known	missense	c.580	p.F194I	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC
ADAR	103	genome.wustl.edu	37	1	154574963	154574963	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	154574963	154574963	G	A	SNP	ADAR	ENST00000292205	human	ensembl	70_37	-1	known	missense	c.284	p.P95L	0.268	NULL	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_Ds-RNA-bd,smart_dsRNA_A_deaminase,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC
AFF1	4299	genome.wustl.edu	37	4	88036015	88036015	+	Missense_Mutation	SNP	A	A	G			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	4	88036015	88036015	A	G	SNP	AFF1	ENST00000395146	human	ensembl	70_37	+1	known	missense	c.2030	p.K677R	0.995	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC
ARHGAP27	201176	genome.wustl.edu	37	17	43482441	43482441	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	17	43482441	43482441	G	T	SNP	ARHGAP27	ENST00000428638	human	ensembl	70_37	-1	known	nonsense	c.1097	p.S366*	0.000	NULL	pfam_RhoGAP_dom,pfam_WW_Rsp5_WWP,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP27	HGNC
ARHGEF28	64283	genome.wustl.edu	37	5	73236812	73236812	+	Missense_Mutation	SNP	G	G	C			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	5	73236812	73236812	G	C	SNP	ARHGEF28	ENST00000545377	human	ensembl	70_37	+1	known	missense	c.5170	p.A1724P	0.001	NULL	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF28	HGNC
ATP8A2	51761	genome.wustl.edu	37	13	26413729	26413729	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	13	26413729	26413729	C	T	SNP	ATP8A2	ENST00000381655	human	ensembl	70_37	+1	known	missense	c.2923	p.L975F	1.000	tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A2	HGNC
C10orf12	26148	genome.wustl.edu	37	10	98744690	98744690	+	Silent	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	10	98744690	98744690	G	A	SNP	C10orf12	ENST00000286067	human	ensembl	70_37	+1	known	silent	c.3543	p.L1181	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC
C2CD4D	100191040	genome.wustl.edu	37	1	151811322	151811322	+	Silent	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	151811322	151811322	G	A	SNP	C2CD4D	ENST00000454109	human	ensembl	70_37	-1	known	silent	c.144	p.I48	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	C2CD4D	HGNC
CBLN4	140689	genome.wustl.edu	37	20	54573720	54573720	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	20	54573720	54573720	G	A	SNP	CBLN4	ENST00000064571	human	ensembl	70_37	-1	known	missense	c.499	p.L167F	0.721	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN4	HGNC
CEP104	9731	genome.wustl.edu	37	1	3759786	3759786	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	3759786	3759786	C	T	SNP	CEP104	ENST00000378223	human	ensembl	70_37	-1	known	nonsense	c.668	p.W223*	0.003	NULL	superfamily_Galactose-bd-like	-	no_errors	CEP104	HGNC
COL5A1	1289	genome.wustl.edu	37	9	137620534	137620534	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	9	137620534	137620534	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	70_37	+1	known	missense	c.805	p.E269K	0.999	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC
CUL3	8452	genome.wustl.edu	37	2	225339094	225339095	+	Splice_Site	INS	-	-	CA			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	2	225339094	225339095	-	CA	INS	CUL3	ENST00000264414	human	ensembl	70_37	-1	known	splice_site_ins	c.2176-2_2176-1	e16-1	1.000:1.000	-	-	-	no_errors	CUL3	HGNC
CUL3	8452	genome.wustl.edu	37	2	225339095	225339095	+	Splice_Site	SNP	T	T	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	2	225339095	225339095	T	A	SNP	CUL3	ENST00000264414	human	ensembl	70_37	-1	known	splice_site	c.2176-2	e16-2	1.000	-	-	-	no_errors	CUL3	HGNC
DDX39A	10212	genome.wustl.edu	37	19	14520640	14520640	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	19	14520640	14520640	C	T	SNP	DDX39A	ENST00000242776	human	ensembl	70_37	-1	known	missense	c.778	p.G260S	0.999	smart_Helicase_ATP-bd,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39A	HGNC
DNAJC1	64215	genome.wustl.edu	37	10	22048515	22048515	+	Missense_Mutation	SNP	C	C	G			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	10	22048515	22048515	C	G	SNP	DNAJC1	ENST00000376980	human	ensembl	70_37	-1	known	missense	c.1180	p.V394L	0.213	NULL	pfam_DnaJ_N,pfam_SANT/Myb,superfamily_DnaJ_N,superfamily_Homeodomain-like,smart_DnaJ_N,smart_SANT/Myb,prints_Hsp_DnaJ,pfscan_Myb-like_dom,pfscan_DnaJ_N	-	no_errors	DNAJC1	HGNC
DSCAM	1826	genome.wustl.edu	37	21	42080507	42080507	+	Silent	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	21	42080507	42080507	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	70_37	-1	known	silent	c.234	p.N78	1.000	smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAM	HGNC
ENC1	8507	genome.wustl.edu	37	5	73931944	73931944	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	5	73931944	73931944	C	A	SNP	ENC1	ENST00000302351	human	ensembl	70_37	-1	known	missense	c.367	p.A123S	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC
ENSG00000210195	0	genome.wustl.edu	37	MT	15908	15908	+	RNA	SNP	T	T	C			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	MT	15908	15908	T	C	SNP	ENSG00000210195	ENST00000387460	human	ensembl	70_37	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.21	Clone_based_ensembl_gene
ENSG00000213777	0	genome.wustl.edu	37	19	54007225	54007225	+	RNA	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	19	54007225	54007225	C	T	SNP	ENSG00000213777	ENST00000597004	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.844	-	-	-	no_errors	CTD-2224J9.8	Clone_based_vega_gene
ENSG00000235994	0	genome.wustl.edu	37	6	168377064	168377064	+	RNA	SNP	A	A	G			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	6	168377064	168377064	A	G	SNP	ENSG00000235994	ENST00000538528	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.701	-	-	-	no_errors	RP3-470B24.5	Clone_based_vega_gene
ENSG00000267075	0	genome.wustl.edu	37	17	20451439	20451439	+	RNA	SNP	G	G	C			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	17	20451439	20451439	G	C	SNP	ENSG00000267075	ENST00000591705	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-434D2.3	Clone_based_vega_gene
ERLEC1	27248	genome.wustl.edu	37	2	54014459	54014459	+	Missense_Mutation	SNP	A	A	C			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	2	54014459	54014459	A	C	SNP	ERLEC1	ENST00000185150	human	ensembl	70_37	+1	known	missense	c.112	p.S38R	1.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	ERLEC1	HGNC
NUTM2G	441457	genome.wustl.edu	37	9	99700931	99700931	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	9	99700931	99700931	C	T	SNP	FAM22G	ENST00000372322	human	ensembl	70_37	+1	known	missense	c.1726	p.R576W	0.001	NULL	NULL	-	no_errors	FAM22G	HGNC
FAM47A	158724	genome.wustl.edu	37	X	34148844	34148844	+	Missense_Mutation	SNP	G	G	C			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	X	34148844	34148844	G	C	SNP	FAM47A	ENST00000346193	human	ensembl	70_37	-1	known	missense	c.1552	p.R518G	0.005	NULL	NULL	-	no_errors	FAM47A	HGNC
FLT3	2322	genome.wustl.edu	37	13	28601288	28601288	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	13	28601288	28601288	G	A	SNP	FLT3	ENST00000380982	human	ensembl	70_37	-1	known	missense	c.2144	p.T715I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	FLT3	HGNC
GSTA5	221357	genome.wustl.edu	37	6	52701125	52701125	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	6	52701125	52701125	C	A	SNP	GSTA5	ENST00000284562	human	ensembl	70_37	-1	known	missense	c.181	p.D61Y	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA5	HGNC
GTF2IRD2P1	401375	genome.wustl.edu	37	7	72658807	72658807	+	RNA	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	7	72658807	72658807	G	A	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.650	-	-	-	no_errors	GTF2IRD2P1	HGNC
HERC2P4	100289574	genome.wustl.edu	37	16	32182155	32182155	+	RNA	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	16	32182155	32182155	C	T	SNP	HERC2P4	ENST00000564730	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.958	-	-	-	no_errors	HERC2P4	HGNC
IGLON5	402665	genome.wustl.edu	37	19	51831094	51831094	+	Silent	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	19	51831094	51831094	C	T	SNP	IGLON5	ENST00000270642	human	ensembl	70_37	+1	known	silent	c.876	p.R292	0.991	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGLON5	HGNC
INTS7	25896	genome.wustl.edu	37	1	212156143	212156143	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	212156143	212156143	C	T	SNP	INTS7	ENST00000366994	human	ensembl	70_37	-1	known	missense	c.1007	p.S336N	0.990	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC
IQSEC2	23096	genome.wustl.edu	37	X	53296141	53296141	+	RNA	SNP	T	T	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	X	53296141	53296141	T	A	SNP	IQSEC2	ENST00000462054	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	IQSEC2	HGNC
ITGA4	3676	genome.wustl.edu	37	2	182347104	182347104	+	Silent	SNP	T	T	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	2	182347104	182347104	T	A	SNP	ITGA4	ENST00000397033	human	ensembl	70_37	+1	known	silent	c.858	p.I286	0.607	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC
KEAP1	9817	genome.wustl.edu	37	19	10602878	10602878	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	19	10602878	10602878	G	A	SNP	KEAP1	ENST00000171111	human	ensembl	70_37	-1	known	missense	c.700	p.R234W	0.994	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC
KIAA0020	9933	genome.wustl.edu	37	9	2804207	2804207	+	RNA	SNP	G	G	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	9	2804207	2804207	G	T	SNP	KIAA0020	ENST00000382032	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	KIAA0020	HGNC
KLHL33	123103	genome.wustl.edu	37	14	20897170	20897170	+	Silent	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	14	20897170	20897170	G	A	SNP	KLHL33	ENST00000344581	human	ensembl	70_37	-1	known	silent	c.1440	p.L480	0.015	smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BACK,smart_Kelch_1	-	no_errors	KLHL33	HGNC
LINC00305	221241	genome.wustl.edu	37	18	61747526	61747526	+	RNA	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	18	61747526	61747526	G	A	SNP	LINC00305	ENST00000323355	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00305	HGNC
LOC158572	158572	genome.wustl.edu	37	X	49642957	49642957	+	RNA	DEL	T	T	-			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	X	49642957	49642957	T	-	DEL	LOC158572	ENST00000437322	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AF238380.5	Clone_based_vega_gene
LOC400553	400553	genome.wustl.edu	37	16	88124572	88124572	+	RNA	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	16	88124572	88124572	C	T	SNP	LOC400553	ENST00000378417	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-863P13.4	Clone_based_vega_gene
LOC440993	440993	genome.wustl.edu	37	3	195400814	195400815	+	Splice_Site	INS	-	-	TT			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	3	195400814	195400815	-	TT	INS	LOC440993	ENST00000414625	human	ensembl	70_37	+1	known	splice_site_ins	c.NULL	NULL	0.999:1.000	-	-	-	no_errors	AC069513.3	Clone_based_vega_gene
MAP3K11	4296	genome.wustl.edu	37	11	65375232	65375232	+	Silent	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	11	65375232	65375232	C	T	SNP	MAP3K11	ENST00000309100	human	ensembl	70_37	-1	known	silent	c.1125	p.Q375	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K11	HGNC
MCF2L	23263	genome.wustl.edu	37	13	113720424	113720424	+	Missense_Mutation	SNP	C	C	G			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	13	113720424	113720424	C	G	SNP	MCF2L	ENST00000375604	human	ensembl	70_37	+1	known	missense	c.992	p.A331G	0.010	NULL	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC
MEGF9	1955	genome.wustl.edu	37	9	123374761	123374761	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	9	123374761	123374761	C	T	SNP	MEGF9	ENST00000426959	human	ensembl	70_37	-1	known	missense	c.1111	p.E371K	0.998	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF9	HGNC
METTL12	751071	genome.wustl.edu	37	11	62432845	62432845	+	RNA	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	11	62432845	62432845	G	A	SNP	METTL12	ENST00000594728	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	METTL12	HGNC
KMT2D	8085	genome.wustl.edu	37	12	49432029	49432030	+	Frame_Shift_Ins	INS	-	-	G			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	12	49432029	49432030	-	G	INS	MLL2	ENST00000301067	human	ensembl	70_37	-1	known	frame_shift_ins	c.9110_9109	p.H3037fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC
MT-ATP6	4508	genome.wustl.edu	37	MT	8715	8715	+	Silent	SNP	T	T	C			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	MT	8715	8715	T	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	70_37	+1	known	silent	c.189	p.T63	NULL	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	-	no_errors	MT-ATP6	HGNC
MT-ND5	4540	genome.wustl.edu	37	MT	12552	12552	+	Silent	SNP	A	A	G			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	MT	12552	12552	A	G	SNP	MT-ND5	ENST00000361567	human	ensembl	70_37	+1	known	silent	c.216	p.Q72	NULL	pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC
MT-ND5	4540	genome.wustl.edu	37	MT	12562	12562	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	MT	12562	12562	C	T	SNP	MT-ND5	ENST00000361567	human	ensembl	70_37	+1	known	missense	c.226	p.L76F	NULL	pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC
MYL1	4632	genome.wustl.edu	37	2	211179766	211179766	+	Frame_Shift_Del	DEL	T	T	-			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	2	211179766	211179766	T	-	DEL	MYL1	ENST00000352451	human	ensembl	70_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL1	HGNC
NACAD	23148	genome.wustl.edu	37	7	45123257	45123257	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	7	45123257	45123257	G	A	SNP	NACAD	ENST00000490531	human	ensembl	70_37	-1	known	missense	c.2522	p.A841V	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACAD	HGNC
NPIPB7	440350	genome.wustl.edu	37	16	28468257	28468257	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	16	28468257	28468257	G	A	SNP	NPIPL1	ENST00000452313	human	ensembl	70_37	-1	novel	missense	c.733	p.R245C	0.146	pfam_NPIP	pfam_NPIP	-	no_errors	NPIPL1	HGNC
NPIPB15	440348	genome.wustl.edu	37	16	74425961	74425961	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	16	74425961	74425961	G	A	SNP	NPIPL2	ENST00000429990	human	ensembl	70_37	+1	known	missense	c.1315	p.A439T	0.974	NULL	pfam_NPIP	-	no_errors	NPIPL2	HGNC
NYX	60506	genome.wustl.edu	37	X	41333923	41333923	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	X	41333923	41333923	C	T	SNP	NYX	ENST00000342595	human	ensembl	70_37	+1	known	missense	c.1217	p.A406V	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	NYX	HGNC
OAZ2	4947	genome.wustl.edu	37	15	64980915	64980915	+	Silent	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	15	64980915	64980915	G	A	SNP	OAZ2	ENST00000326005	human	ensembl	70_37	-1	known	silent	c.558	p.S186	0.936	NULL	pfam_ODC_AZ,superfamily_Acyl_CoA_acyltransferase	-	no_errors	OAZ2	HGNC
OR10G8	219869	genome.wustl.edu	37	11	123901166	123901166	+	Silent	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	11	123901166	123901166	G	A	SNP	OR10G8	ENST00000431524	human	ensembl	70_37	+1	known	silent	c.837	p.T279	0.051	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC
OR2T8	343172	genome.wustl.edu	37	1	248084909	248084909	+	Missense_Mutation	SNP	T	T	G			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	248084909	248084909	T	G	SNP	OR2T8	ENST00000319968	human	ensembl	70_37	+1	known	missense	c.590	p.M197R	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC
OR8K3	219473	genome.wustl.edu	37	11	56085805	56085805	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	11	56085805	56085805	C	T	SNP	OR8K3	ENST00000312711	human	ensembl	70_37	+1	known	missense	c.23	p.T8M	0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC
PCDHGA2	56113	genome.wustl.edu	37	5	140720392	140720392	+	Silent	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	5	140720392	140720392	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	70_37	+1	known	silent	c.1854	p.S618	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC
PEAR1	375033	genome.wustl.edu	37	1	156883832	156883832	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	156883832	156883832	C	T	SNP	PEAR1	ENST00000292357	human	ensembl	70_37	+1	known	missense	c.2902	p.R968W	0.015	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC
PER3	8863	genome.wustl.edu	37	1	7897139	7897139	+	Frame_Shift_Del	DEL	A	A	-			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	7897139	7897139	A	-	DEL	PER3	ENST00000361923	human	ensembl	70_37	+1	known	frame_shift_del	c.3452	p.K1152fs	0.998	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC
PLD1	5337	genome.wustl.edu	37	3	171406586	171406586	+	Silent	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	3	171406586	171406586	C	T	SNP	PLD1	ENST00000351298	human	ensembl	70_37	-1	known	silent	c.1419	p.S473	0.054	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_PLipase_D/transphosphatidylase	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC
PLEC	5339	genome.wustl.edu	37	8	144995513	144995513	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	8	144995513	144995513	C	T	SNP	PLEC	ENST00000322810	human	ensembl	70_37	-1	known	missense	c.8887	p.V2963M	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC
PTAFR	5724	genome.wustl.edu	37	1	28476617	28476617	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	28476617	28476617	C	A	SNP	PTAFR	ENST00000305392	human	ensembl	70_37	-1	known	nonsense	c.916	p.E306*	0.523	prints_PAF_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_PAF_rcpt,prints_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	PTAFR	HGNC
RALGAPA2	57186	genome.wustl.edu	37	20	20621380	20621380	+	Missense_Mutation	SNP	T	T	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	20	20621380	20621380	T	A	SNP	RALGAPA2	ENST00000202677	human	ensembl	70_37	-1	known	missense	c.515	p.E172V	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA2	HGNC
RPS6KA2	6196	genome.wustl.edu	37	6	166826326	166826326	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	6	166826326	166826326	G	A	SNP	RPS6KA2	ENST00000510118	human	ensembl	70_37	-1	known	missense	c.2201	p.P734L	0.997	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA2	HGNC
SHANK2	22941	genome.wustl.edu	37	11	70333726	70333726	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	11	70333726	70333726	G	A	SNP	SHANK2	ENST00000338508	human	ensembl	70_37	-1	known	missense	c.2675	p.P892L	0.996	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC
SNORD115-32	100033806	genome.wustl.edu	37	15	25474139	25474139	+	RNA	SNP	G	G	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	15	25474139	25474139	G	T	SNP	SNORD115-32	ENST00000364079	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD115-32	HGNC
SOGA3	387104	genome.wustl.edu	37	6	127797184	127797184	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	6	127797184	127797184	C	T	SNP	SOGA3	ENST00000368268	human	ensembl	70_37	-1	known	missense	c.1987	p.V663M	1.000	pfam_DUF3166	pfam_DUF3166	-	no_errors	SOGA3	HGNC
SYT4	6860	genome.wustl.edu	37	18	40853812	40853812	+	Silent	SNP	G	G	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	18	40853812	40853812	G	T	SNP	SYT4	ENST00000255224	human	ensembl	70_37	-1	known	silent	c.582	p.I194	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT4	HGNC
TENM2	57451	genome.wustl.edu	37	5	167674346	167674346	+	Silent	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	5	167674346	167674346	C	T	SNP	TENM2	ENST00000518659	human	ensembl	70_37	+1	known	silent	c.6402	p.V2134	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC
TMEM98	26022	genome.wustl.edu	37	17	31267987	31267987	+	Silent	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	17	31267987	31267987	C	T	SNP	TMEM98	ENST00000394642	human	ensembl	70_37	+1	known	silent	c.657	p.F219	1.000	NULL	NULL	-	no_errors	TMEM98	HGNC
TTLL5	23093	genome.wustl.edu	37	14	76420881	76420882	+	RNA	INS	-	-	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	14	76420881	76420882	-	T	INS	TTLL5	ENST00000554972	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000:0.005	-	-	-	no_errors	TTLL5	HGNC
UBR4	23352	genome.wustl.edu	37	1	19480331	19480331	+	Silent	SNP	C	C	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	19480331	19480331	C	T	SNP	UBR4	ENST00000375267	human	ensembl	70_37	-1	known	silent	c.6561	p.P2187	0.490	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC
WDTC1	23038	genome.wustl.edu	37	1	27633121	27633122	+	RNA	INS	-	-	C			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	1	27633121	27633122	-	C	INS	WDTC1	ENST00000491239	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	WDTC1	HGNC
XKR4	114786	genome.wustl.edu	37	8	56015526	56015526	+	Missense_Mutation	SNP	C	C	G			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	8	56015526	56015526	C	G	SNP	XKR4	ENST00000327381	human	ensembl	70_37	+1	known	missense	c.478	p.Q160E	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC
ZMIZ1	57178	genome.wustl.edu	37	10	81070690	81070690	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	10	81070690	81070690	G	A	SNP	ZMIZ1	ENST00000334512	human	ensembl	70_37	+1	known	missense	c.2845	p.A949T	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC
ZNF491	126069	genome.wustl.edu	37	19	11917970	11917971	+	Frame_Shift_Ins	INS	-	-	T			TCGA-JW-A5VK-01A-11D-A28B-09	TCGA-JW-A5VK-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0d7c75a3-8a45-4361-b159-6644b42f2ee1	9c42d657-7aff-46d2-a208-bca4a24027de	19	11917970	11917971	-	T	INS	ZNF491	ENST00000323169	human	ensembl	70_37	+1	known	frame_shift_ins	c.1202_1203	p.E402fs	0.047:0.010	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF491	HGNC
