Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ABCA9	10350	genome.wustl.edu	37	17	67045564	67045564	+	Missense_Mutation	SNP	T	T	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	17	67045564	67045564	T	A	SNP	ABCA9	ENST00000340001	human	ensembl	70_37	-1	known	missense	c.164	p.H55L	0.003	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC
APC	324	genome.wustl.edu	37	5	112179351	112179351	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	5	112179351	112179351	C	T	SNP	APC	ENST00000257430	human	ensembl	70_37	+1	known	missense	c.8060	p.S2687L	0.974	pfam_EB1-bd	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC
ATP9A	10079	genome.wustl.edu	37	20	50287703	50287703	+	Silent	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	20	50287703	50287703	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	70_37	-1	known	silent	c.1131	p.T377	0.104	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC
BCORL1	63035	genome.wustl.edu	37	X	129139195	129139195	+	RNA	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	X	129139195	129139195	G	A	SNP	BCORL1	ENST00000488135	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	BCORL1	HGNC
BPIFB4	149954	genome.wustl.edu	37	20	31695549	31695549	+	Splice_Site	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	20	31695549	31695549	G	A	SNP	BPIFB4	ENST00000375483	human	ensembl	70_37	+1	known	splice_site	c.1745-1	e15-1	0.999	-	-	-	no_errors	BPIFB4	HGNC
CASKIN2	57513	genome.wustl.edu	37	17	73497691	73497691	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	17	73497691	73497691	G	A	SNP	CASKIN2	ENST00000321617	human	ensembl	70_37	-1	known	missense	c.3376	p.R1126C	0.999	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC
CELP	1057	genome.wustl.edu	37	9	135960308	135960308	+	RNA	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	9	135960308	135960308	C	T	SNP	CELP	ENST00000411440	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CELP	HGNC
CHERP	10523	genome.wustl.edu	37	19	16636365	16636365	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	19	16636365	16636365	C	T	SNP	CHERP	ENST00000546361	human	ensembl	70_37	-1	known	missense	c.1429	p.D477N	0.854	NULL	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC
CNKSR2	22866	genome.wustl.edu	37	X	21581385	21581385	+	Missense_Mutation	SNP	G	G	C			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	X	21581385	21581385	G	C	SNP	CNKSR2	ENST00000379510	human	ensembl	70_37	+1	known	missense	c.1423	p.E475Q	1.000	pfam_CNKSR2	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC
CYP21A2	1589	genome.wustl.edu	37	6	32006938	32006938	+	Silent	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	6	32006938	32006938	C	T	SNP	CYP21A2	ENST00000418967	human	ensembl	70_37	+1	known	silent	c.360	p.H120	0.986	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC
DAP3	7818	genome.wustl.edu	37	1	155658795	155658795	+	RNA	SNP	G	G	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	155658795	155658795	G	T	SNP	DAP3	ENST00000461479	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DAP3	HGNC
DLC1	10395	genome.wustl.edu	37	8	12943867	12943867	+	Silent	SNP	G	G	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	8	12943867	12943867	G	T	SNP	DLC1	ENST00000276297	human	ensembl	70_37	-1	known	silent	c.4398	p.S1466	0.997	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC
DZIP1L	199221	genome.wustl.edu	37	3	137787115	137787115	+	Silent	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	3	137787115	137787115	G	A	SNP	DZIP1L	ENST00000327532	human	ensembl	70_37	-1	known	silent	c.1710	p.P570	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC
ELAVL4	1996	genome.wustl.edu	37	1	50661260	50661260	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	50661260	50661260	G	A	SNP	ELAVL4	ENST00000371821	human	ensembl	70_37	+1	known	missense	c.551	p.R184H	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL4	HGNC
ENSG00000214796	0	genome.wustl.edu	37	1	202828216	202828216	+	RNA	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	202828216	202828216	G	A	SNP	ENSG00000214796	ENST00000430114	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-480I12.5	Clone_based_vega_gene
ESRP1	54845	genome.wustl.edu	37	8	95677406	95677406	+	Missense_Mutation	SNP	T	T	G			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	8	95677406	95677406	T	G	SNP	ESRP1	ENST00000433389	human	ensembl	70_37	+1	known	missense	c.913	p.F305V	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC
FAM98C	147965	genome.wustl.edu	37	19	38897559	38897559	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	19	38897559	38897559	G	A	SNP	FAM98C	ENST00000252530	human	ensembl	70_37	+1	known	missense	c.760	p.E254K	0.208	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC
GABPB2	126626	genome.wustl.edu	37	1	151076068	151076068	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	151076068	151076068	C	G	SNP	GABPB2	ENST00000368918	human	ensembl	70_37	+1	known	nonsense	c.653	p.S218*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB2	HGNC
GPX7	2882	genome.wustl.edu	37	1	53072514	53072514	+	Silent	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	53072514	53072514	G	A	SNP	GPX7	ENST00000361314	human	ensembl	70_37	+1	known	silent	c.297	p.E99	1.000	pfam_Glutathione_peroxidase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,tigrfam_Glut_perox_Gpx7	pfam_Glutathione_peroxidase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase,tigrfam_Glut_perox_Gpx7	-	no_errors	GPX7	HGNC
HERC2	8924	genome.wustl.edu	37	15	28463704	28463704	+	Missense_Mutation	SNP	T	T	G			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	15	28463704	28463704	T	G	SNP	HERC2	ENST00000261609	human	ensembl	70_37	-1	known	missense	c.5959	p.S1987R	0.311	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC
HRNR	388697	genome.wustl.edu	37	1	152186614	152186614	+	Silent	SNP	C	C	G			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	152186614	152186614	C	G	SNP	HRNR	ENST00000368801	human	ensembl	70_37	-1	known	silent	c.7491	p.S2497	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC
ITGA10	8515	genome.wustl.edu	37	1	145534935	145534935	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	145534935	145534935	G	A	SNP	ITGA10	ENST00000369304	human	ensembl	70_37	+1	known	missense	c.1838	p.R613Q	1.000	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC
KAT2A	2648	genome.wustl.edu	37	17	40266039	40266039	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	17	40266039	40266039	C	T	SNP	KAT2A	ENST00000225916	human	ensembl	70_37	-1	known	missense	c.2299	p.E767K	1.000	pirsf_Hist_acetylase_PCAF,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom	-	no_errors	KAT2A	HGNC
LINC00623	728855	genome.wustl.edu	37	1	149581234	149581235	+	RNA	INS	-	-	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	149581234	149581235	-	T	INS	LINC00623	ENST00000598569	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000:0.005	-	-	-	no_errors	RP11-353N4.6	Clone_based_vega_gene
MACF1	23499	genome.wustl.edu	37	1	39789874	39789874	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	39789874	39789874	G	A	SNP	MACF1	ENST00000317713	human	ensembl	70_37	+1	known	missense	c.4261	p.E1421K	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC
MDS2	259283	genome.wustl.edu	37	1	23966894	23966895	+	In_Frame_Ins	INS	-	-	AAG			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	1	23966894	23966895	-	AAG	INS	MDS2	ENST00000374555	human	ensembl	70_37	+1	known	in_frame_ins	c.278_279	p.96in_frame_insR	0.391:0.362	NULL	NULL	-	no_errors	MDS2	HGNC
MUC2	4583	genome.wustl.edu	37	11	1079662	1079662	+	Silent	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	11	1079662	1079662	G	A	SNP	MUC2	ENST00000441003	human	ensembl	70_37	+1	known	silent	c.879	p.K293	0.810	superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC
NBEAL2	23218	genome.wustl.edu	37	3	47049909	47049909	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	3	47049909	47049909	C	T	SNP	NBEAL2	ENST00000450053	human	ensembl	70_37	+1	known	missense	c.7856	p.A2619V	0.147	superfamily_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC
NDUFAF3	25915	genome.wustl.edu	37	3	49059635	49059635	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	3	49059635	49059635	C	T	SNP	NDUFAF3	ENST00000326925	human	ensembl	70_37	+1	known	missense	c.58	p.P20S	0.000	NULL	pfam_NADH_Ub_cplx-1_asu_assmbl-fac3,superfamily_NADH_Ub_cplx-1_asu_assmbl-fac3	-	no_errors	NDUFAF3	HGNC
NEAT1	283131	genome.wustl.edu	37	11	65211894	65211894	+	RNA	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	11	65211894	65211894	C	T	SNP	NEAT1	ENST00000501122	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NEAT1	HGNC
NRXN2	9379	genome.wustl.edu	37	11	64421184	64421184	+	Silent	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	11	64421184	64421184	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	70_37	-1	known	silent	c.2400	p.R800	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC
NT5E	4907	genome.wustl.edu	37	6	86199239	86199239	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	6	86199239	86199239	G	A	SNP	NT5E	ENST00000257770	human	ensembl	70_37	+1	known	missense	c.1132	p.E378K	0.991	pfam_5'-Nucleotdase_C,superfamily_5'-Nucleotdase_C	pfam_5'-Nucleotdase_C,pfam_Metallo_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase	-	no_errors	NT5E	HGNC
OFD1	8481	genome.wustl.edu	37	X	13775835	13775835	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	X	13775835	13775835	G	A	SNP	OFD1	ENST00000340096	human	ensembl	70_37	+1	known	missense	c.1468	p.E490K	0.801	superfamily_Lipoprotein_6	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC
OR10AG1	282770	genome.wustl.edu	37	11	55735343	55735343	+	Silent	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	11	55735343	55735343	C	T	SNP	OR10AG1	ENST00000312345	human	ensembl	70_37	-1	known	silent	c.597	p.T199	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC
OR4S1	256148	genome.wustl.edu	37	11	48327879	48327879	+	Silent	SNP	C	C	G			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	11	48327879	48327879	C	G	SNP	OR4S1	ENST00000319988	human	ensembl	70_37	+1	known	silent	c.105	p.L35	0.102	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC
PCDH12	51294	genome.wustl.edu	37	5	141337076	141337076	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	5	141337076	141337076	C	T	SNP	PCDH12	ENST00000231484	human	ensembl	70_37	-1	known	missense	c.341	p.G114E	0.020	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC
PCDH19	57526	genome.wustl.edu	37	X	99661981	99661981	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	X	99661981	99661981	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	70_37	-1	known	missense	c.1615	p.G539S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC
POMC	5443	genome.wustl.edu	37	2	25384197	25384197	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	2	25384197	25384197	C	T	SNP	POMC	ENST00000264708	human	ensembl	70_37	-1	known	missense	c.557	p.R186Q	0.000	NULL	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC
RICTOR	253260	genome.wustl.edu	37	5	38954960	38954960	+	Silent	SNP	T	T	C			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	5	38954960	38954960	T	C	SNP	RICTOR	ENST00000296782	human	ensembl	70_37	-1	known	silent	c.2613	p.L871	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC
RLTPR	146206	genome.wustl.edu	37	16	67680869	67680869	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	16	67680869	67680869	G	A	SNP	RLTPR	ENST00000334583	human	ensembl	70_37	+1	known	missense	c.604	p.G202S	0.918	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC
RPS6KA6	27330	genome.wustl.edu	37	X	83351215	83351215	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	X	83351215	83351215	G	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	70_37	-1	known	missense	c.1958	p.S653L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC
SAMD8	142891	genome.wustl.edu	37	10	76910349	76910349	+	Silent	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	10	76910349	76910349	G	A	SNP	SAMD8	ENST00000372690	human	ensembl	70_37	+1	known	silent	c.252	p.L84	1.000	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD8	HGNC
SP3	6670	genome.wustl.edu	37	2	174774850	174774850	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	2	174774850	174774850	G	A	SNP	SP3	ENST00000310015	human	ensembl	70_37	-1	known	missense	c.2165	p.A722V	0.995	NULL	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC
SPATA20	64847	genome.wustl.edu	37	17	48625393	48625393	+	RNA	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	17	48625393	48625393	C	T	SNP	SPATA20	ENST00000511937	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	SPATA20	HGNC
TAPBP	6892	genome.wustl.edu	37	6	33281175	33281175	+	Missense_Mutation	SNP	G	G	C			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	6	33281175	33281175	G	C	SNP	TAPBP	ENST00000426633	human	ensembl	70_37	-1	known	missense	c.288	p.F96L	0.000	NULL	pfam_Ig_C1-set,pfscan_Ig-like,prints_Tapasin	-	no_errors	TAPBP	HGNC
TTLL2	83887	genome.wustl.edu	37	6	167754940	167754940	+	Missense_Mutation	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	6	167754940	167754940	C	T	SNP	TTLL2	ENST00000239587	human	ensembl	70_37	+1	known	missense	c.1552	p.H518Y	0.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL2	HGNC
XIST	7503	genome.wustl.edu	37	X	73046776	73046776	+	RNA	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	X	73046776	73046776	C	T	SNP	XIST	ENST00000429829	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	XIST	HGNC
ZNF521	25925	genome.wustl.edu	37	18	22805422	22805422	+	Silent	SNP	C	C	T			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	18	22805422	22805422	C	T	SNP	ZNF521	ENST00000361524	human	ensembl	70_37	-1	known	silent	c.2460	p.A820	0.619	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC
ZNF536	9745	genome.wustl.edu	37	19	31039377	31039377	+	Missense_Mutation	SNP	G	G	A			TCGA-LP-A4AU-01A-32D-A243-09	TCGA-LP-A4AU-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8a53198f-ee29-4cca-8cb2-9944790bcc53	e6f97122-0a11-4a7e-9332-9aaf33cb0d38	19	31039377	31039377	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	70_37	+1	known	missense	c.2851	p.G951R	0.250	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC
