Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
WNT9A	7483	hgsc.bcm.edu	36	1	226178576	226178577	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_003395	exon3	c.501_502insG	p.G167fs	.	.	.
CHRM2	1129	hgsc.bcm.edu	36	7	136350671	136350671	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000739	exon4	c.T519A	p.D173E	.	.	.
CHRM2	1129	hgsc.bcm.edu	36	7	136350677	136350677	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000739	exon4	c.G525A	p.E175E	.	.	.
ATP6V0A4	50617	hgsc.bcm.edu	36	7	138074881	138074881	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_130840	exon14	c.G1516T	p.D506Y	.	.	.
ZNF498	221785	hgsc.bcm.edu	36	7	99065023	99065023	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145115	exon8	c.G1079C	p.S360T	.	.	.
FOXRED2	80020	hgsc.bcm.edu	36	22	35222008	35222008	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001102371	exon7	c.T1576C	p.S526P	.	.	.
KIR3DL3	115653	hgsc.bcm.edu	36	19	59929365	59929365	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153443	exon3	c.C105T	p.P35P	.	.	.
NLRP4	147945	hgsc.bcm.edu	36	19	61084692	61084692	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_134444	exon10	c.C2912T	p.T971M	.	.	.
ZNF552	79818	hgsc.bcm.edu	36	19	63011759	63011759	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024762	exon3	c.C685T	p.Q229X	.	.	.
ZNF121	7675	hgsc.bcm.edu	36	19	9538373	9538373	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001008727	exon4	c.C416G	p.T139S	.	.	.
TMEM71	137835	hgsc.bcm.edu	36	8	133795617	133795617	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145153	exon7	c.G590A	p.S197N	.	.	.
COMMD5	28991	hgsc.bcm.edu	36	8	146046869	146046869	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001081004	exon2	c.G659A	p.R220H	.	.	.
TOX	9760	hgsc.bcm.edu	36	8	59883364	59883364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014729	exon8	c.G1411A	p.D471N	.	.	.
RASAL2	9462	hgsc.bcm.edu	36	1	176693587	176693587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_170692	exon14	c.G2537A	p.R846Q	.	.	.
SMG7	9887	hgsc.bcm.edu	36	1	181786836	181786836	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001174061	exon21	c.C3212A	p.A1071E	.	.	.
CACNA1S	779	hgsc.bcm.edu	36	1	199312717	199312717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000069	exon12	c.G1781A	p.R594H	.	.	.
KIAA1377	57562	hgsc.bcm.edu	36	11	101337963	101337963	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020802	exon6	c.T987C	p.D329D	.	.	.
ARHGAP20	57569	hgsc.bcm.edu	36	11	109982549	109982549	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020809	exon10	c.C910T	p.Q304X	.	.	.
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	T	G	T	Unknown	Valid	Germline	Phase_I	Capture	454			SOLID	NM_001001480	exon1	c.G50T	p.R17L	KRTAP5-5,lung,NS,Substitution - Missense,+1	.	.
SLC22A25	387601	hgsc.bcm.edu	36	11	62752599	62752599	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_199352	exon2	c.G416T	p.C139F	.	.	.
GRM1	2911	hgsc.bcm.edu	36	6	146762213	146762213	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001114329	exon8	c.A2345T	p.N782I	.	.	.
SMOC2	64094	hgsc.bcm.edu	36	6	168741468	168741468	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166412	exon8	c.A683T	p.K228M	.	.	.
OR2H1	26716	hgsc.bcm.edu	36	6	29537884	29537884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030883	exon3	c.G359A	p.R120Q	.	.	.
NOTCH4	4855	hgsc.bcm.edu	36	6	32271230	32271230	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004557	exon30	c.C5974T	p.L1992F	.	.	.
TAPBP	6892	hgsc.bcm.edu	36	6	33379730	33379730	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_172208	exon7	c.A1315G	p.T439A	.	.	.
TRERF1	55809	hgsc.bcm.edu	36	6	42308544	42308544	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033502	exon17	c.C3131A	p.T1044N	.	.	.
MDN1	23195	hgsc.bcm.edu	36	6	90434519	90434519	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014611	exon84	c.G14029A	p.G4677R	.	.	.
ACACA	31	hgsc.bcm.edu	36	17	32638809	32638809	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198834	exon31	c.C3726T	p.N1242N	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518313	7518313	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon7	c.C693T	p.T231T	.	.	.
ZP2	7783	hgsc.bcm.edu	36	16	21120211	21120211	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003460	exon14	c.G1674C	p.Q558H	.	.	.
MC2R	4158	hgsc.bcm.edu	36	18	13875364	13875364	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000529	exon2	c.A154G	p.N52D	.	.	.
SLC6A11	6538	hgsc.bcm.edu	36	3	10954978	10954978	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014229	exon14	c.C1789T	p.R597W	.	.	.
TRIM42	287015	hgsc.bcm.edu	36	3	141884615	141884615	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152616	exon2	c.C963T	p.H321H	.	.	.
FNDC3B	64778	hgsc.bcm.edu	36	3	173535555	173535555	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001135095	exon15	c.G1769C	p.S590T	.	.	.
EIF2B5	8893	hgsc.bcm.edu	36	3	185342459	185342459	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003907	exon8	c.G1209A	p.A403A	.	.	.
RFC4	5984	hgsc.bcm.edu	36	3	187990851	187990851	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002916	exon9	c.C840G	p.A280A	.	.	.
ATF7IP	55729	hgsc.bcm.edu	36	12	14525234	14525234	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018179	exon13	c.C3128T	p.P1043L	.	.	.
OSBPL8	114882	hgsc.bcm.edu	36	12	75304145	75304145	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020841	exon14	c.C1467T	p.G489G	.	.	.
MAP2K5	5607	hgsc.bcm.edu	36	15	65782794	65782794	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145160	exon16	c.T1038A	p.F346L	.	.	.
QRFPR	84109	hgsc.bcm.edu	36	4	122473462	122473462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198179	exon4	c.G761A	p.R254Q	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126590844	126590844	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024582	exon9	c.G9223C	p.V3075L	.	.	.
FGA	2243	hgsc.bcm.edu	36	4	155727183	155727183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021871	exon5	c.C848T	p.T283M	.	.	.
CCDC111	201973	hgsc.bcm.edu	36	4	185849848	185849848	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152683	exon13	c.T1413A	p.F471L	.	.	.
NFXL1	152518	hgsc.bcm.edu	36	4	47602083	47602083	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152995	exon4	c.T444C	p.Y148Y	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5741823	5741823	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166136	exon5	c.C428T	p.S143L	.	.	.
STBD1	8987	hgsc.bcm.edu	36	4	77450044	77450044	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003943	exon2	c.C944T	p.A315V	.	.	.
RGAG1	57529	hgsc.bcm.edu	36	X	109583529	109583529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020769	exon3	c.G3028A	p.V1010M	.	.	.
DOCK11	139818	hgsc.bcm.edu	36	X	117579465	117579465	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144658	exon7	c.C650A	p.S217X	.	.	.
L1CAM	3897	hgsc.bcm.edu	36	X	152787334	152787334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001143963	exon11	c.C1407A	p.F469L	.	.	.
MSN	4478	hgsc.bcm.edu	36	X	64867772	64867772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002444	exon5	c.G546A	p.M182I	.	.	.
NONO	4841	hgsc.bcm.edu	36	X	70434480	70434480	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145410	exon7	c.G831C	p.Q277H	.	.	.
ITM2A	9452	hgsc.bcm.edu	36	X	78504760	78504760	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004867	exon4	c.C526G	p.L176V	.	.	.
TBX22	50945	hgsc.bcm.edu	36	X	79167863	79167863	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001109878	exon5	c.C564A	p.T188T	.	.	.
DPP10	57628	hgsc.bcm.edu	36	2	116265154	116265154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001178036	exon19	c.T1409C	p.M470T	.	.	.
LPIN1	23175	hgsc.bcm.edu	36	2	11878057	11878057	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145693	exon19	c.C2479T	p.L827L	.	.	.
TPO	7173	hgsc.bcm.edu	36	2	1476778	1476778	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_175721	exon10	c.C1966G	p.L656V	.	.	.
MARCH7	64844	hgsc.bcm.edu	36	2	160327733	160327733	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022826	exon8	c.C1990G	p.P664A	.	.	.
SDPR	8436	hgsc.bcm.edu	36	2	192409547	192409547	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004657	exon2	c.C625T	p.P209S	.	.	.
FN1	2335	hgsc.bcm.edu	36	2	215982686	215982686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_212476	exon15	c.C2144T	p.T715M	.	.	.
C2orf44	80304	hgsc.bcm.edu	36	2	24114828	24114828	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025203	exon2	c.T1041A	p.F347L	.	.	.
STON1-GTF2A1L	286749	hgsc.bcm.edu	36	2	48727407	48727407	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006872	exon6	c.T700C	p.C234R	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55415053	55415053	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001135597	exon15	c.T2408A	p.L803Q	.	.	.
RNF103	7844	hgsc.bcm.edu	36	2	86701033	86701033	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198952	exon2	c.C297T	p.T99T	.	.	.
SNRNP200	23020	hgsc.bcm.edu	36	2	96308088	96308088	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014014	exon38	c.C5412T	p.I1804I	.	.	.
DDX58	23586	hgsc.bcm.edu	36	9	32447312	32447312	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014314	exon18	c.A2586G	p.I862M	.	.	.
CCL21	6366	hgsc.bcm.edu	36	9	34699648	34699648	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002989	exon3	c.C220T	p.L74L	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38241884	38241884	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207361	exon4	c.C5580T	p.P1860P	.	.	.
GPC6	10082	hgsc.bcm.edu	36	13	93280695	93280695	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005708	exon3	c.G607A	p.V203M	.	.	.
PDZD8	118987	hgsc.bcm.edu	36	10	119032943	119032943	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173791	exon5	c.C3291T	p.G1097G	.	.	.
MKI67	4288	hgsc.bcm.edu	36	10	129800465	129800465	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145966	exon8	c.A811G	p.I271V	.	.	.
TSPAN14	81619	hgsc.bcm.edu	36	10	82263770	82263770	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030927	exon7	c.A592G	p.T198A	.	.	.
SLCO6A1	133482	hgsc.bcm.edu	36	5	101843899	101843899	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173488	exon2	c.G497A	p.G166E	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203247	112203247	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.G4003T	p.E1335X	APC,large_intestine,right,Substitution - Nonsense,0	.	.
DMXL1	1657	hgsc.bcm.edu	36	5	118510921	118510921	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005509	exon17	c.T2768A	p.L923Q	.	.	.
SNX2	6643	hgsc.bcm.edu	36	5	122193197	122193197	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003100	exon15	c.A1515T	p.I505I	.	.	.
SLC22A5	6584	hgsc.bcm.edu	36	5	131750702	131750702	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003060	exon5	c.A911G	p.N304S	.	.	.
ZNF454	285676	hgsc.bcm.edu	36	5	178325442	178325442	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182594	exon5	c.T1431A	p.F477L	.	.	.
IQGAP2	10788	hgsc.bcm.edu	36	5	76008818	76008818	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006633	exon28	c.T3547G	p.C1183G	.	.	.
