Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
AMY2B	280	genome.wustl.edu	37	1	104114862	104114862	+	Missense_Mutation	SNP	G	G	C			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	1	104114862	104114862	G	C	SNP	AMY2B	ENST00000361355	human	ensembl	70_37	+1	known	missense	c.299	p.R100T	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC
ARL15	54622	genome.wustl.edu	37	5	53181043	53181044	+	RNA	INS	-	-	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	5	53181043	53181044	-	T	INS	ARL15	ENST00000502271	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.030:0.013	-	-	-	no_errors	ARL15	HGNC
ASPM	259266	genome.wustl.edu	37	1	197072216	197072216	+	Silent	SNP	T	T	C			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	1	197072216	197072216	T	C	SNP	ASPM	ENST00000367409	human	ensembl	70_37	-1	known	silent	c.6165	p.R2055	0.108	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC
BCAT2	587	genome.wustl.edu	37	19	49300457	49300457	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	19	49300457	49300457	C	T	SNP	BCAT2	ENST00000316273	human	ensembl	70_37	-1	known	missense	c.829	p.E277K	0.769	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC
CCDC92	80212	genome.wustl.edu	37	12	124421823	124421823	+	Missense_Mutation	SNP	C	C	G			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	12	124421823	124421823	C	G	SNP	CCDC92	ENST00000238156	human	ensembl	70_37	-1	known	missense	c.778	p.E260Q	1.000	NULL	NULL	-	no_errors	CCDC92	HGNC
CREB3L3	84699	genome.wustl.edu	37	19	4157158	4157158	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	19	4157158	4157158	C	T	SNP	CREB3L3	ENST00000078445	human	ensembl	70_37	+1	known	missense	c.323	p.T108I	0.000	NULL	pfam_bZIP,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC
CYP4F43P	646802	genome.wustl.edu	37	2	130748038	130748038	+	RNA	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	2	130748038	130748038	G	A	SNP	CYP4F43P	ENST00000440931	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC018865.8	Clone_based_vega_gene
DEPDC5	9681	genome.wustl.edu	37	22	32302364	32302364	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	22	32302364	32302364	G	A	SNP	DEPDC5	ENST00000266091	human	ensembl	70_37	+1	known	missense	c.4627	p.D1543N	0.991	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC
ENSG00000187686	0	genome.wustl.edu	37	11	124984040	124984040	+	RNA	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	11	124984040	124984040	C	T	SNP	ENSG00000187686	ENST00000534728	human	ensembl	70_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-687M24.3	Clone_based_vega_gene
ENSG00000210191	0	genome.wustl.edu	37	MT	12280	12280	+	RNA	SNP	A	A	G			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	MT	12280	12280	A	G	SNP	ENSG00000210191	ENST00000387456	human	ensembl	70_37	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.19	Clone_based_ensembl_gene
ENSG00000225411	0	genome.wustl.edu	37	9	68401351	68401351	+	RNA	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	9	68401351	68401351	C	T	SNP	ENSG00000225411	ENST00000417843	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene
ENSG00000232903	0	genome.wustl.edu	37	10	134759255	134759255	+	RNA	SNP	C	C	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	10	134759255	134759255	C	A	SNP	ENSG00000232903	ENST00000443633	human	ensembl	70_37	-1	putative	rna	NULL	NULL	0.135	-	-	-	no_errors	RP13-137A17.4	Clone_based_vega_gene
ENSG00000238261	0	genome.wustl.edu	37	1	143403424	143403424	+	RNA	SNP	G	G	C			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	1	143403424	143403424	G	C	SNP	ENSG00000238261	ENST00000433980	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	BX004987.5	Clone_based_vega_gene
ENSG00000259966	0	genome.wustl.edu	37	16	32617194	32617194	+	RNA	SNP	G	G	C			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	16	32617194	32617194	G	C	SNP	ENSG00000259966	ENST00000566952	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-652G5.1	Clone_based_vega_gene
ENSG00000265901	0	genome.wustl.edu	37	4	9601972	9601972	+	RNA	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	4	9601972	9601972	C	T	SNP	ENSG00000265901	ENST00000459267	human	ensembl	70_37	-1	novel	rna	NULL	NULL	0.357	-	-	-	no_errors	AC097493.1	Clone_based_ensembl_gene
ENSG00000266700	0	genome.wustl.edu	37	X	53172259	53172259	+	RNA	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	X	53172259	53172259	G	A	SNP	ENSG00000266700	ENST00000578198	human	ensembl	70_37	-1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors	AL139396.1	Clone_based_ensembl_gene
ENSG00000268301	0	genome.wustl.edu	37	12	11187132	11187133	+	In_Frame_Ins	INS	-	-	TTG			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	12	11187132	11187133	-	TTG	INS	ENSG00000268301	ENST00000601123	human	ensembl	70_37	+1	novel	in_frame_ins	c.46_47	p.S16in_frame_insFA	0.012:0.013	NULL	NULL	-	no_errors	AC018630.1	Clone_based_ensembl_gene
ENSG00000268301	0	genome.wustl.edu	37	12	11187133	11187134	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	12	11187133	11187134	-	AG	INS	ENSG00000268301	ENST00000601123	human	ensembl	70_37	+1	novel	frame_shift_ins	c.47_48	p.K17fs	0.013:0.210	NULL	NULL	-	no_errors	AC018630.1	Clone_based_ensembl_gene
ENSG00000268573	0	genome.wustl.edu	37	18	32864416	32864416	+	RNA	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	18	32864416	32864416	C	T	SNP	ENSG00000268573	ENST00000586922	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	RP11-158H5.7	Clone_based_vega_gene
ETFB	2109	genome.wustl.edu	37	19	51848515	51848515	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	19	51848515	51848515	C	T	SNP	ETFB	ENST00000354232	human	ensembl	70_37	-1	known	missense	c.991	p.E331K	1.000	NULL	pfam_ETF_a/b_N,smart_ETF_a/b_N	-	no_errors	ETFB	HGNC
GPC2	221914	genome.wustl.edu	37	7	99773202	99773202	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	7	99773202	99773202	C	T	SNP	GPC2	ENST00000292377	human	ensembl	70_37	-1	known	missense	c.641	p.R214H	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC
GPM6A	2823	genome.wustl.edu	37	4	176594981	176594981	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	4	176594981	176594981	G	T	SNP	GPM6A	ENST00000280187	human	ensembl	70_37	-1	known	missense	c.237	p.D79E	1.000	pfam_Myelin_PLP,prints_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6A	HGNC
IGFALS	3483	genome.wustl.edu	37	16	1841503	1841503	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	16	1841503	1841503	G	A	SNP	IGFALS	ENST00000415638	human	ensembl	70_37	-1	known	missense	c.1030	p.R344W	0.989	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC
KIAA1024	23251	genome.wustl.edu	37	15	79750542	79750542	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	15	79750542	79750542	G	A	SNP	KIAA1024	ENST00000305428	human	ensembl	70_37	+1	known	missense	c.2053	p.D685N	0.998	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC
KIF1A	547	genome.wustl.edu	37	2	241664739	241664739	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	2	241664739	241664739	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	70_37	-1	known	missense	c.4205	p.S1402L	0.975	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	70_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC
LRRC30	339291	genome.wustl.edu	37	18	7231199	7231199	+	Silent	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	18	7231199	7231199	G	A	SNP	LRRC30	ENST00000383467	human	ensembl	70_37	+1	known	silent	c.63	p.T21	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC30	HGNC
METTL8	79828	genome.wustl.edu	37	2	172195993	172195993	+	Missense_Mutation	SNP	C	C	G			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	2	172195993	172195993	C	G	SNP	METTL8	ENST00000392604	human	ensembl	70_37	-1	known	missense	c.307	p.D103H	1.000	NULL	pfam_Methyltransf_11	-	no_errors	METTL8	HGNC
MOB1B	92597	genome.wustl.edu	37	4	71768103	71768103	+	RNA	SNP	C	C	G			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	4	71768103	71768103	C	G	SNP	MOB1B	ENST00000511449	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	MOB1B	HGNC
MSH4	4438	genome.wustl.edu	37	1	76282203	76282203	+	Missense_Mutation	SNP	G	G	C			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	1	76282203	76282203	G	C	SNP	MSH4	ENST00000263187	human	ensembl	70_37	+1	known	missense	c.961	p.E321Q	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC
MT-ND5	4540	genome.wustl.edu	37	MT	13825	13825	+	Nonsense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	MT	13825	13825	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	70_37	+1	known	nonsense	c.1489	p.G497*	NULL	pfam_NADH_DH_su5_C,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC
MUC16	94025	genome.wustl.edu	37	19	9057967	9057967	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	19	9057967	9057967	G	A	SNP	MUC16	ENST00000397910	human	ensembl	70_37	-1	known	missense	c.29479	p.H9827Y	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC
MUC16	94025	genome.wustl.edu	37	19	9062922	9062922	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	19	9062922	9062922	G	A	SNP	MUC16	ENST00000397910	human	ensembl	70_37	-1	known	missense	c.24524	p.S8175L	0.003	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC
OR13F1	138805	genome.wustl.edu	37	9	107266772	107266772	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	9	107266772	107266772	G	T	SNP	OR13F1	ENST00000334726	human	ensembl	70_37	+1	known	missense	c.229	p.A77S	0.833	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13F1	HGNC
OR1C1	26188	genome.wustl.edu	37	1	247920940	247920940	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	1	247920940	247920940	C	T	SNP	OR1C1	ENST00000408896	human	ensembl	70_37	-1	known	missense	c.769	p.A257T	0.014	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1C1	HGNC
PBX2P1	5088	genome.wustl.edu	37	3	142897272	142897273	+	RNA	INS	-	-	TTG			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	3	142897272	142897273	-	TTG	INS	PBX2P1	ENST00000560287	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.085:0.057	-	-	-	no_errors	PBX2P1	HGNC
PPFIA1	8500	genome.wustl.edu	37	11	70183532	70183532	+	Missense_Mutation	SNP	A	A	G			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	11	70183532	70183532	A	G	SNP	PPFIA1	ENST00000253925	human	ensembl	70_37	+1	known	missense	c.1490	p.K497R	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC
PRR4	11272	genome.wustl.edu	37	12	11001055	11001055	+	RNA	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	12	11001055	11001055	C	T	SNP	PRR4	ENST00000539285	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	PRR4	HGNC
PTPRT	11122	genome.wustl.edu	37	20	40979319	40979319	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	20	40979319	40979319	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	70_37	-1	known	missense	c.1814	p.T605M	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC
RAB40A	142684	genome.wustl.edu	37	X	102755559	102755559	+	Silent	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	X	102755559	102755559	C	T	SNP	RAB40A	ENST00000304236	human	ensembl	70_37	-1	known	silent	c.126	p.P42	0.274	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40A	HGNC
SBF1	6305	genome.wustl.edu	37	22	50897698	50897698	+	Missense_Mutation	SNP	T	T	C			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	22	50897698	50897698	T	C	SNP	SBF1	ENST00000380817	human	ensembl	70_37	-1	known	missense	c.3812	p.H1271R	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC
SIX5	147912	genome.wustl.edu	37	19	46270270	46270270	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	19	46270270	46270270	G	A	SNP	SIX5	ENST00000317578	human	ensembl	70_37	-1	known	missense	c.947	p.P316L	0.993	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX5	HGNC
SMC2	10592	genome.wustl.edu	37	9	106882375	106882375	+	Silent	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	9	106882375	106882375	G	A	SNP	SMC2	ENST00000286398	human	ensembl	70_37	+1	known	silent	c.2064	p.L688	0.511	superfamily_SMC_hinge	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC
SMOX	54498	genome.wustl.edu	37	20	4155761	4155761	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	20	4155761	4155761	G	A	SNP	SMOX	ENST00000305958	human	ensembl	70_37	+1	known	missense	c.59	p.R20Q	1.000	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	-	no_errors	SMOX	HGNC
SPEG	10290	genome.wustl.edu	37	2	220348578	220348578	+	Silent	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	2	220348578	220348578	C	T	SNP	SPEG	ENST00000312358	human	ensembl	70_37	+1	novel	silent	c.6393	p.F2131	0.855	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC
TNNI3	7137	genome.wustl.edu	37	19	55668952	55668952	+	Silent	SNP	C	C	T			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	19	55668952	55668952	C	T	SNP	TNNI3	ENST00000344887	human	ensembl	70_37	-1	known	silent	c.6	p.A2	0.802	NULL	pfam_Troponin,pfam_Troponin-I_N	-	no_errors	TNNI3	HGNC
UBN1	29855	genome.wustl.edu	37	16	4910677	4910677	+	Silent	SNP	C	C	G			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	16	4910677	4910677	C	G	SNP	UBN1	ENST00000262376	human	ensembl	70_37	+1	known	silent	c.684	p.L228	0.999	NULL	NULL	-	no_errors	UBN1	HGNC
UROD	7389	genome.wustl.edu	37	1	45480138	45480138	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	1	45480138	45480138	G	A	SNP	UROD	ENST00000246337	human	ensembl	70_37	+1	known	missense	c.664	p.G222R	1.000	pfam_Uroporphyrinogen_deCOase,tigrfam_Uroporphyrinogen_deCO2ase_HemE	pfam_Uroporphyrinogen_deCOase,tigrfam_Uroporphyrinogen_deCO2ase_HemE	-	no_errors	UROD	HGNC
XRRA1	143570	genome.wustl.edu	37	11	74651913	74651913	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A3HF-01A-11D-A20U-09	TCGA-C5-A3HF-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4627ca0c-13cc-45e5-aaa9-e2e7026780b5	0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41	11	74651913	74651913	G	A	SNP	XRRA1	ENST00000340360	human	ensembl	70_37	-1	known	missense	c.11	p.S4L	0.296	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC
