Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ABCC2	1244	genome.wustl.edu	37	10	101577118	101577118	+	Silent	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	10	101577118	101577118	G	A	SNP	ABCC2	ENST00000370449	human	ensembl	70_37	+1	known	silent	c.2148	p.K716	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	14	105246551	105246551	C	T	SNP	AKT1	ENST00000349310	human	ensembl	70_37	-1	known	missense	c.49	p.E17K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT1	HGNC
ANKRD20A12P	100874392	genome.wustl.edu	37	1	142715054	142715054	+	RNA	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	1	142715054	142715054	G	A	SNP	ANKRD20A12P	ENST00000595144	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.086	-	-	-	no_errors	ANKRD20A12P	HGNC
ARID1A	8289	genome.wustl.edu	37	1	27100152	27100152	+	Frame_Shift_Del	DEL	G	G	-			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	1	27100152	27100152	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	70_37	+1	known	frame_shift_del	c.3948	p.M1318fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC
BAI3	577	genome.wustl.edu	37	6	70070851	70070851	+	Missense_Mutation	SNP	G	G	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	6	70070851	70070851	G	T	SNP	BAI3	ENST00000370598	human	ensembl	70_37	+1	known	missense	c.3686	p.G1229V	0.306	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC
C1QL2	165257	genome.wustl.edu	37	2	119915184	119915184	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	2	119915184	119915184	G	A	SNP	C1QL2	ENST00000272520	human	ensembl	70_37	-1	known	missense	c.662	p.A221V	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL2	HGNC
CACNA1C	775	genome.wustl.edu	37	12	2786273	2786273	+	Silent	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	12	2786273	2786273	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	70_37	+1	known	silent	c.4842	p.T1614	0.623	pfam_VDCC_a1su_IQ	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC
CACNA1S	779	genome.wustl.edu	37	1	201031122	201031122	+	Silent	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	1	201031122	201031122	G	A	SNP	CACNA1S	ENST00000362061	human	ensembl	70_37	-1	known	silent	c.3003	p.L1001	0.817	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC
CACNB1	782	genome.wustl.edu	37	17	37343054	37343054	+	Silent	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	17	37343054	37343054	G	A	SNP	CACNB1	ENST00000394303	human	ensembl	70_37	-1	known	silent	c.543	p.L181	1.000	superfamily_SH3_domain,prints_VDCC_L_b1su	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC
CCDC67	159989	genome.wustl.edu	37	11	93104221	93104221	+	Silent	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	11	93104221	93104221	C	T	SNP	CCDC67	ENST00000298050	human	ensembl	70_37	+1	known	silent	c.564	p.Y188	1.000	NULL	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC
CDHR4	389118	genome.wustl.edu	37	3	49831352	49831352	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	3	49831352	49831352	G	A	SNP	CDHR4	ENST00000412678	human	ensembl	70_37	-1	known	missense	c.1367	p.A456V	0.963	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR4	HGNC
CHD7	55636	genome.wustl.edu	37	8	61735064	61735064	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	8	61735064	61735064	G	A	SNP	CHD7	ENST00000307121	human	ensembl	70_37	+1	known	missense	c.2960	p.R987Q	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC
CTNND1	1500	genome.wustl.edu	37	11	57576862	57576862	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	11	57576862	57576862	G	A	SNP	CTNND1	ENST00000399050	human	ensembl	70_37	+1	known	missense	c.2359	p.A787T	0.857	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC
DUS3L	56931	genome.wustl.edu	37	19	5788165	5788165	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	19	5788165	5788165	C	T	SNP	DUS3L	ENST00000309061	human	ensembl	70_37	-1	known	missense	c.965	p.R322Q	0.993	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC
DYSF	8291	genome.wustl.edu	37	2	71817400	71817400	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	2	71817400	71817400	G	A	SNP	DYSF	ENST00000413539	human	ensembl	70_37	+1	known	missense	c.3595	p.D1199N	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_MFS_dom_general_subst_transpt,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	DYSF	HGNC
ENSG00000197210	0	genome.wustl.edu	37	22	21477351	21477351	+	RNA	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	22	21477351	21477351	C	T	SNP	ENSG00000197210	ENST00000420508	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	KB-1592A4.15	Clone_based_vega_gene
ENSG00000248540	0	genome.wustl.edu	37	15	74421007	74421008	+	Frame_Shift_Ins	INS	-	-	G			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	15	74421007	74421008	-	G	INS	ENSG00000248540	ENST00000563727	human	ensembl	70_37	-1	putative	frame_shift_ins	c.71_70	p.R24fs	0.000:0.000	NULL	NULL	-	no_errors	RP11-247C2.2	Clone_based_vega_gene
ENSG00000253992	0	genome.wustl.edu	37	8	131955571	131955571	+	RNA	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	8	131955571	131955571	C	T	SNP	ENSG00000253992	ENST00000523318	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-737F9.1	Clone_based_vega_gene
FAM157B	100132403	genome.wustl.edu	37	9	141107563	141107563	+	RNA	SNP	A	A	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	9	141107563	141107563	A	T	SNP	FAM157B	ENST00000446912	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.171	-	-	-	no_errors	FAM157B	HGNC
FAM47B	170062	genome.wustl.edu	37	X	34961911	34961911	+	Silent	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	X	34961911	34961911	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	70_37	+1	known	silent	c.963	p.P321	0.998	NULL	NULL	-	no_errors	FAM47B	HGNC
FAT4	79633	genome.wustl.edu	37	4	126408724	126408724	+	Silent	SNP	A	A	G			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	4	126408724	126408724	A	G	SNP	FAT4	ENST00000394329	human	ensembl	70_37	+1	known	silent	c.13041	p.G4347	0.995	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC
GSTA4	2941	genome.wustl.edu	37	6	52852197	52852197	+	Nonsense_Mutation	SNP	C	C	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	6	52852197	52852197	C	A	SNP	GSTA4	ENST00000370959	human	ensembl	70_37	-1	known	nonsense	c.97	p.E33*	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA4	HGNC
KIR2DL1	3802	genome.wustl.edu	37	19	55284906	55284906	+	Silent	SNP	G	G	C			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	19	55284906	55284906	G	C	SNP	KIR2DL1	ENST00000336077	human	ensembl	70_37	+1	known	silent	c.192	p.G64	0.003	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL1	HGNC
LINC00266-1	140849	genome.wustl.edu	37	20	62934863	62934864	+	RNA	INS	-	-	TT			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	20	62934863	62934864	-	TT	INS	LINC00266-1	ENST00000279067	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.448:0.498	-	-	-	no_errors	LINC00266-1	HGNC
LINC00675	100289255	genome.wustl.edu	37	17	10707112	10707112	+	Missense_Mutation	SNP	G	G	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	17	10707112	10707112	G	T	SNP	LINC00675	ENST00000580310	human	ensembl	70_37	-1	novel	missense	c.169	p.L57I	0.173	NULL	NULL	-	no_errors	LINC00675	HGNC
LOC344967	344967	genome.wustl.edu	37	4	40045490	40045490	+	RNA	SNP	G	G	C			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	4	40045490	40045490	G	C	SNP	LOC344967	ENST00000381811	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-333E13.4	Clone_based_vega_gene
LRIT1	26103	genome.wustl.edu	37	10	86001174	86001174	+	Missense_Mutation	SNP	G	G	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	10	86001174	86001174	G	T	SNP	LRIT1	ENST00000372105	human	ensembl	70_37	-1	known	missense	c.22	p.L8I	0.992	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRIT1	HGNC
MAPK8	5599	genome.wustl.edu	37	10	49634660	49634660	+	RNA	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	10	49634660	49634660	G	A	SNP	MAPK8	ENST00000469110	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MAPK8	HGNC
MTOR	2475	genome.wustl.edu	37	1	11190804	11190804	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	1	11190804	11190804	C	T	SNP	MTOR	ENST00000361445	human	ensembl	70_37	-1	known	missense	c.5395	p.E1799K	1.000	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC
MYH13	8735	genome.wustl.edu	37	17	10216514	10216514	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	17	10216514	10216514	G	A	SNP	MYH13	ENST00000252172	human	ensembl	70_37	-1	known	missense	c.4142	p.T1381M	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC
NDUFB10	4716	genome.wustl.edu	37	16	2011218	2011218	+	Silent	SNP	G	G	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	16	2011218	2011218	G	T	SNP	NDUFB10	ENST00000268668	human	ensembl	70_37	+1	known	silent	c.195	p.V65	1.000	pfam_NADH_UbQ_OxRdtase_su10	pfam_NADH_UbQ_OxRdtase_su10	-	no_errors	NDUFB10	HGNC
OCA2	4948	genome.wustl.edu	37	15	28263672	28263672	+	Silent	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	15	28263672	28263672	C	T	SNP	OCA2	ENST00000354638	human	ensembl	70_37	-1	known	silent	c.678	p.T226	0.038	NULL	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC
OR4K15	81127	genome.wustl.edu	37	14	20444114	20444114	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	14	20444114	20444114	G	A	SNP	OR4K15	ENST00000305051	human	ensembl	70_37	+1	known	missense	c.437	p.R146H	0.995	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC
P2RX6	9127	genome.wustl.edu	37	22	21369471	21369471	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	22	21369471	21369471	C	T	SNP	P2RX6	ENST00000413302	human	ensembl	70_37	+1	known	missense	c.8	p.P3L	0.000	NULL	pfam_P2X_purnocptor,prints_P2X6_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX6	HGNC
PCDHGA5	56110	genome.wustl.edu	37	5	140745607	140745607	+	Silent	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	5	140745607	140745607	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	70_37	+1	known	silent	c.1710	p.D570	0.437	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC
PHC2	1912	genome.wustl.edu	37	1	33799839	33799839	+	Missense_Mutation	SNP	G	G	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	1	33799839	33799839	G	T	SNP	PHC2	ENST00000419414	human	ensembl	70_37	-1	known	missense	c.1613	p.T538N	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC
PHLDA1	22822	genome.wustl.edu	37	12	76424952	76424952	+	Missense_Mutation	SNP	C	C	G			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	12	76424952	76424952	C	G	SNP	PHLDA1	ENST00000266671	human	ensembl	70_37	-1	known	missense	c.570	p.Q190H	0.996	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	PHLDA1	HGNC
PPEF1	5475	genome.wustl.edu	37	X	18800495	18800495	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	X	18800495	18800495	C	T	SNP	PPEF1	ENST00000361511	human	ensembl	70_37	+1	known	missense	c.737	p.T246M	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC
PPP3R2	5535	genome.wustl.edu	37	9	104356772	104356772	+	Silent	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	9	104356772	104356772	G	A	SNP	PPP3R2	ENST00000374806	human	ensembl	70_37	-1	known	silent	c.441	p.G147	0.678	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin,prints_Parvalbumin	-	no_errors	PPP3R2	HGNC
RAC1	5879	genome.wustl.edu	37	7	6441974	6441974	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	7	6441974	6441974	C	T	SNP	RAC1	ENST00000356142	human	ensembl	70_37	+1	known	missense	c.533	p.A178V	1.000	pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAC1	HGNC
REEP4	80346	genome.wustl.edu	37	8	21996983	21996983	+	Missense_Mutation	SNP	G	G	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	8	21996983	21996983	G	T	SNP	REEP4	ENST00000306306	human	ensembl	70_37	-1	known	missense	c.363	p.F121L	0.998	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP4	HGNC
RNU6V	6071	genome.wustl.edu	37	1	110134211	110134211	+	RNA	DEL	A	A	-			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	1	110134211	110134211	A	-	DEL	RNU6V	ENST00000384105	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.851	-	-	-	no_errors	RNU6V	HGNC
SCD5	79966	genome.wustl.edu	37	4	83601868	83601868	+	Silent	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	4	83601868	83601868	G	A	SNP	SCD5	ENST00000319540	human	ensembl	70_37	-1	known	silent	c.561	p.I187	1.000	pfam_Fatty_acid_desaturase-1	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC
SIN3B	23309	genome.wustl.edu	37	19	16989122	16989122	+	Missense_Mutation	SNP	T	T	C			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	19	16989122	16989122	T	C	SNP	SIN3B	ENST00000379803	human	ensembl	70_37	+1	known	missense	c.3179	p.L1060P	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC
SLITRK5	26050	genome.wustl.edu	37	13	88330416	88330416	+	Missense_Mutation	SNP	G	G	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	13	88330416	88330416	G	T	SNP	SLITRK5	ENST00000325089	human	ensembl	70_37	+1	known	missense	c.2773	p.V925L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC
TMEM106B	54664	genome.wustl.edu	37	7	12255285	12255285	+	Silent	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	7	12255285	12255285	C	T	SNP	TMEM106B	ENST00000420833	human	ensembl	70_37	+1	known	silent	c.273	p.I91	0.037	NULL	pfam_DUF1356_TMEM106	-	no_errors	TMEM106B	HGNC
USP42	84132	genome.wustl.edu	37	7	6189655	6189655	+	Missense_Mutation	SNP	G	G	A			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	7	6189655	6189655	G	A	SNP	USP42	ENST00000306177	human	ensembl	70_37	+1	known	missense	c.1828	p.E610K	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP42	HGNC
ZNF71	58491	genome.wustl.edu	37	19	57132752	57132752	+	Missense_Mutation	SNP	C	C	T			TCGA-EX-A449-01A-11D-A243-09	TCGA-EX-A449-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1eb9870a-29fc-4eea-afed-b0b63fac10f1	f953aee9-2d96-4247-a737-20f021934cf3	19	57132752	57132752	C	T	SNP	ZNF71	ENST00000328070	human	ensembl	70_37	+1	known	missense	c.97	p.P33S	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC
