Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ABCC6	368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	16284071	16284071	+	Missense_Mutation	SNP	C	C	T	rs140045277		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ABHD14A	25864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52012054	52012054	+	Silent	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ALOX12B	242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7990740	7990740	+	Silent	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ANXA4	307	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	70045736	70045736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ATP5B	506	broad.mit.edu;hgsc.bcm.edu	37	12	57033957	57033957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
C1orf83	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54562078	54562078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
C7orf51	0	hgsc.bcm.edu	37	7	100086160	100086161	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
CCHCR1	54535	broad.mit.edu;hgsc.bcm.edu	37	6	31111166	31111166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
CELA3B	23436	broad.mit.edu;hgsc.bcm.edu	37	1	22304925	22304925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
CLASP2	23122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33725901	33725901	+	Silent	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
CLEC16A	23274	hgsc.bcm.edu	37	16	11260328	11260343	+	Frame_Shift_Del	DEL	AGCGGCAGCGGGAGCA	AGCGGCAGCGGGAGCA	-	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	AGCGGCAGCGGGAGCA	AGCGGCAGCGGGAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238244811	238244811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
CPSF4	10898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99047957	99047957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
CWF19L1	55280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102006678	102006678	+	Silent	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
DENND2D	79961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111734915	111734915	+	Silent	SNP	A	A	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
DENND2D	79961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111734916	111734916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
DHX8	1659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41585811	41585811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
DIP2B	57609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	51084867	51084867	+	Silent	SNP	T	T	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
DNM1L	10059	hgsc.bcm.edu;ucsc.edu	37	12	32863894	32863894	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
EME1	146956	broad.mit.edu;hgsc.bcm.edu	37	17	48452557	48452557	+	5'UTR	SNP	A	A	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
EME1	146956	broad.mit.edu;hgsc.bcm.edu	37	17	48452559	48452559	+	5'UTR	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53684167	53684167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
FANCA	2175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89838183	89838183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
FAT1	2195	broad.mit.edu;ucsc.edu	37	4	187549318	187549318	+	Silent	SNP	C	T	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
FER1L6	654463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125072866	125072866	+	Silent	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
FIZ1	84922	broad.mit.edu;hgsc.bcm.edu	37	19	56109181	56109181	+	Silent	SNP	G	G	A	rs189301284	by1000genomes	TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
FMN2	56776	hgsc.bcm.edu	37	1	240371023	240371055	+	In_Frame_Del	DEL	CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA	CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA	-	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA	CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
FSIP1	161835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40068678	40068678	+	Silent	SNP	T	T	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
FZR1	51343	broad.mit.edu;hgsc.bcm.edu	37	19	3522955	3522955	+	Splice_Site	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
GGA1	26088	broad.mit.edu;hgsc.bcm.edu	37	22	38010280	38010280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
GON4L	54856	broad.mit.edu;hgsc.bcm.edu	37	1	155753882	155753882	+	Splice_Site	SNP	T	T	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
GTF2H1	2965	broad.mit.edu;ucsc.edu	37	11	18357301	18357301	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
H1F0	3005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38201974	38201974	+	Silent	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
HDAC1	3065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32796451	32796451	+	Silent	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
HIVEP2	3097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	143081369	143081369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
HOXC6	3223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54422672	54422672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
IFT172	26160	hgsc.bcm.edu;ucsc.edu	37	2	27684150	27684150	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
IL7R	3575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	35871222	35871222	+	Silent	SNP	G	G	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
INTS2	57508	broad.mit.edu;hgsc.bcm.edu	37	17	60004006	60004006	+	Silent	SNP	T	T	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
IPO4	79711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24651164	24651164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
IZUMO2	126123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50657881	50657881	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
KCTD18	130535	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201354993	201354993	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
KIAA1522	57648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33237800	33237800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
KIAA1614	57710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	180904820	180904820	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
LARP1	23367	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154179286	154179286	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
LCN1	3933	broad.mit.edu;hgsc.bcm.edu	37	9	138413417	138413417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
LILRB5	10990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54758770	54758770	+	Silent	SNP	G	G	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
MARK1	4139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	220752837	220752837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
MDH1	4190	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	63834039	63834039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
MFRP	83552	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119212284	119212284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
MIER1	57708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67450321	67450321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
MYO5A	4644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52646191	52646191	+	Silent	SNP	T	T	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
NAT2	10	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	18258243	18258243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
NCOA5	57727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44693847	44693847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
NOBOX	135935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	144098145	144098145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
NUP35	129401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	184016285	184016285	+	Silent	SNP	A	A	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ODZ2	0	hgsc.bcm.edu	37	5	167545365	167545366	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
OR1L1	26737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125424612	125424612	+	Silent	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ORC1	4998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	52851529	52851529	+	Silent	SNP	T	T	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PDXP	57026	broad.mit.edu;hgsc.bcm.edu	37	22	38055358	38055358	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PITRM1	10531	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	3197825	3197825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PLA2G15	23659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68283347	68283347	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
POLQ	10721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121187276	121187276	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PPFIA2	8499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	81675169	81675169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PPWD1	23398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64859225	64859225	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PQLC3	130814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11304356	11304356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PRELID1	27166	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176733119	176733119	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89692920	89692921	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
RARA	5914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38506145	38506145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
RASSF6	166824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	74442420	74442420	+	Silent	SNP	A	A	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
RBM47	54502	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	40428110	40428110	+	Silent	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
RCAN1	1827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	35893901	35893901	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
S100A14	57402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153587436	153587436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
SERPINB7	8710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61463591	61463591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
SMAD9	4093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	37453538	37453538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
SOBP	55084	broad.mit.edu;hgsc.bcm.edu	37	6	107955403	107955403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
SPZ1	84654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	79616637	79616637	+	Silent	SNP	C	C	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
SSFA2	6744	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	182766972	182766972	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
SSTR1	6751	broad.mit.edu;hgsc.bcm.edu	37	14	38678641	38678641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
THOC2	57187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	122758390	122758390	+	Splice_Site	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TLN2	83660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63000819	63000819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TMEM131	23505	broad.mit.edu;hgsc.bcm.edu	37	2	98418894	98418894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TMEM68	137695	hgsc.bcm.edu;ucsc.edu	37	8	56675226	56675227	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TMPRSS15	5651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	19666661	19666661	+	Silent	SNP	A	A	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TONSL	4796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145666428	145666428	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TREH	11181	hgsc.bcm.edu	37	11	118529044	118529045	+	Frame_Shift_Ins	INS	-	-	G	rs11448549	bycluster;by1000genomes	TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TUBA4A	7277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220116808	220116808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TXNDC15	79770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134232036	134232036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TXNDC15	79770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134232037	134232037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
UBE2N	7334	hgsc.bcm.edu	37	12	93804524	93804532	+	In_Frame_Del	DEL	TGGGCTTCG	TGGGCTTCG	-	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	TGGGCTTCG	TGGGCTTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
USP26	83844	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132161721	132161721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
YIPF3	25844	hgsc.bcm.edu	37	6	43483424	43483425	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ZMYM6	9204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35480663	35480663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ZNF295	0	hgsc.bcm.edu;ucsc.edu	37	21	43411090	43411098	+	In_Frame_Del	DEL	ATGTGATTG	ATGTGATTG	-	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	ATGTGATTG	ATGTGATTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ZNF512B	57473	broad.mit.edu;ucsc.edu	37	20	62599261	62599261	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ZNF846	162993	hgsc.bcm.edu;ucsc.edu	37	19	9869150	9869150	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ZYG11B	79699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	53245634	53245634	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ASAP2	8853	broad.mit.edu	37	2	9533614	9533614	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
C4orf21	55345	broad.mit.edu	37	4	113539199	113539199	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ESPNP	284729	broad.mit.edu	37	1	17023110	17023110	+	Missense_Mutation	SNP	G	A	A	rs11260887	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
FAM124A	220108	broad.mit.edu	37	13	51825776	51825776	+	Silent	SNP	G	T	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
GCFC1	0	broad.mit.edu	37	21	34143766	34143766	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
GCFC1	0	broad.mit.edu	37	21	34143767	34143767	+	Silent	SNP	G	A	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
HIST1H2AK	8330	broad.mit.edu	37	6	27805883	27805883	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
KGFLP2	654466	broad.mit.edu	37	9	41962424	41962424	+	RNA	SNP	T	A	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
PCDHGB3	56102	broad.mit.edu	37	5	140751901	140751901	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
TCF7	6932	broad.mit.edu	37	5	133451702	133451702	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
ZNF737	100129842	broad.mit.edu	37	19	20727828	20727828	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3346-01A-01D-0966-08	TCGA-A3-3346-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8a52c11-2278-4f15-80bb-c7115c2cd737	4a91a470-3bee-458d-bc64-6d4d99f34620	
