Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ABLIM1	3983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	116201492	116201492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
AHNAK2	113146	hgsc.bcm.edu	37	14	105415541	105415541	+	Missense_Mutation	SNP	T	T	C	rs150617757	by1000genomes	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
AIRE	326	hgsc.bcm.edu	37	21	45711063	45711075	+	Frame_Shift_Del	DEL	GCCTGTCCCCTCC	GCCTGTCCCCTCC	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	GCCTGTCCCCTCC	GCCTGTCCCCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
AMAC1	0	broad.mit.edu;hgsc.bcm.edu	37	17	33520557	33520557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
ANO6	196527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	45810629	45810629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
ASH1L	55870	broad.mit.edu;hgsc.bcm.edu	37	1	155491017	155491017	+	Silent	SNP	T	T	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
ATP12A	479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25272913	25272913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
BCL3	602	hgsc.bcm.edu;ucsc.edu	37	19	45262806	45262807	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
BECN1	8678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40970428	40970428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
BMPR2	659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	203421005	203421005	+	Nonsense_Mutation	SNP	C	C	T	rs137852748		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
BTBD7	55727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	93761005	93761005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
BTN1A1	696	hgsc.bcm.edu	37	6	26509395	26509395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
C2orf55	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	99448880	99448880	+	Silent	SNP	G	G	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
C4orf37	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	99049685	99049685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
CCNL1	57018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	156867954	156867954	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
CHIT1	1118	hgsc.bcm.edu	37	1	203188855	203188856	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
CMYA5	202333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	79031741	79031741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
COL6A1	1291	hgsc.bcm.edu;ucsc.edu	37	21	47402547	47402549	+	Frame_Shift_Del	DEL	GAC	GAC	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	GAC	GAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
COL7A1	1294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48607732	48607732	+	Silent	SNP	G	G	A	rs142651194	byfrequency	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
CPNE7	27132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89657453	89657453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
CYP8B1	1582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	42915969	42915969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
DCHS2	54798	hgsc.bcm.edu	37	4	155312411	155312411	+	Silent	SNP	G	G	A	rs62331900	bycluster;byfrequency;by1000genomes	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11650990	11650990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
DTNA	1837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	32405233	32405233	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
EDA	1896	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	69255287	69255287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
ENAM	10117	hgsc.bcm.edu;ucsc.edu	37	4	71500242	71500242	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
FAM120AOS	158293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	96209937	96209937	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
FASTKD1	79675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170416921	170416921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
FUT6	2528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	5832203	5832203	+	Missense_Mutation	SNP	G	G	A	rs111589452	byfrequency	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
GABBR1	2550	broad.mit.edu;hgsc.bcm.edu	37	6	29573438	29573438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
GLTPD1	80772	hgsc.bcm.edu;ucsc.edu	37	1	1262701	1262701	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
GPM6A	2823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	176622807	176622807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
GRIK3	2899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	37335385	37335385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
HAUS6	54801	hgsc.bcm.edu	37	9	19063108	19063108	+	Silent	SNP	T	T	C	rs61740790	byfrequency	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
HECTD1	25831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	31576011	31576011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
IFT122	55764	hgsc.bcm.edu	37	3	129233285	129233286	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
IRS1	3667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	227662870	227662870	+	Silent	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
ITGB1BP1	9270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	9548243	9548243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
KIF15	56992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	44816791	44816791	+	Silent	SNP	T	T	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
KIF16B	55614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	16509021	16509021	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
L1TD1	54596	hgsc.bcm.edu	37	1	62676248	62676251	+	Frame_Shift_Del	DEL	AACT	AACT	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	AACT	AACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
LAMA2	3908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	129799907	129799907	+	Silent	SNP	T	T	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
LRFN5	145581	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	42356025	42356025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
LSM7	51690	broad.mit.edu;hgsc.bcm.edu	37	19	2321719	2321719	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
MAP1A	4130	hgsc.bcm.edu	37	15	43816122	43816123	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
MOCS1	4337	hgsc.bcm.edu	37	6	39895285	39895285	+	Silent	SNP	G	G	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
MS4A7	58475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60150630	60150630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
MUC17	140453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100685938	100685938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
MYCBP2	23077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	77835374	77835374	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
NBN	4683	broad.mit.edu;ucsc.edu	37	8	90955480	90955481	+	Splice_Site	DEL	CC	-	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
NETO1	81832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	70417575	70417575	+	Silent	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
NLRP8	126205	hgsc.bcm.edu;ucsc.edu	37	19	56487556	56487557	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
OR4P4	81300	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55405910	55405910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
OR7D2	162998	hgsc.bcm.edu;ucsc.edu	37	19	9297034	9297034	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52651419	52651419	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PCDHGA11	56105	broad.mit.edu;hgsc.bcm.edu	37	5	140802703	140802703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82430893	82430893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PCNXL2	80003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	233386509	233386509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PEX5	5830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7360264	7360264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PLA2G7	7941	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46684241	46684241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PNPLA6	10908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7605595	7605595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PRELP	5549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203452939	203452939	+	Silent	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
RBM33	155435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	155473515	155473515	+	Silent	SNP	A	A	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
RGL2	5863	broad.mit.edu;hgsc.bcm.edu	37	6	33259865	33259865	+	RNA	SNP	A	A	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
RNF180	285671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	63509694	63509694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
RORA	6095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	60789779	60789779	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
SAMD14	201191	broad.mit.edu;ucsc.edu	37	17	48195543	48195543	+	Silent	SNP	C	T	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
SKA1	220134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	47906545	47906545	+	Silent	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
SPAG16	79582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	214239769	214239769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
SPG11	80208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	44858475	44858475	+	Silent	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
SPTY2D1	144108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18636763	18636763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
TBX3	6926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	115117393	115117393	+	Silent	SNP	A	A	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
TMEM145	284339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42820894	42820894	+	Splice_Site	SNP	T	T	C	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
TNRC18	84629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	5391579	5391579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
TNRC18	84629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	5391580	5391580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
TRPC4	7223	broad.mit.edu;ucsc.edu	37	13	38320157	38320157	+	Silent	SNP	G	T	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
TTC17	55761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	43429097	43429097	+	Silent	SNP	A	A	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
VPS13C	54832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	62241747	62241747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
WDR35	57539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20162080	20162080	+	Silent	SNP	G	G	A	rs142103808		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
ZDHHC2	51201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17067943	17067943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
ABCA11P	79963	broad.mit.edu	37	4	420664	420664	+	Missense_Mutation	SNP	G	T	T	rs1053401	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
CROCCL1	0	broad.mit.edu	37	1	16946434	16946434	+	RNA	SNP	C	T	T	rs367060	by2hit2allele	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
CROCCL1	0	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	A	A	rs28392876	bycluster;byfrequency	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
FAM50B	26240	broad.mit.edu	37	6	3850384	3850384	+	Silent	SNP	C	T	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
LOC387646	0	broad.mit.edu	37	10	27538014	27538014	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
LRRC37B	114659	broad.mit.edu	37	17	30357718	30357718	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
NYX	60506	broad.mit.edu	37	X	41307152	41307152	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
PBX2	5089	broad.mit.edu	37	6	32156550	32156550	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
TNRC18	84629	broad.mit.edu	37	7	5427483	5427483	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
Unknown	0	broad.mit.edu	37	15	84946555	84946556	+	RNA	INS	-	T	T	rs71453238	alternate_allele	TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
Unknown	0	broad.mit.edu	37	9	68413570	68413570	+	RNA	SNP	G	A	A	novel		TCGA-A3-3372-01A-01D-0966-08	TCGA-A3-3372-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f9f50073-a1d3-4c52-be78-529bd05cbce4	eabe41f2-bf96-48bd-98c1-9a001b92bf85	
