Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ACSF2	80221	hgsc.bcm.edu;ucsc.edu	37	17	48548424	48548424	+	Silent	SNP	A	A	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
AFF2	2334	hgsc.bcm.edu;ucsc.edu	37	X	148037494	148037494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
APBB3	10307	hgsc.bcm.edu	37	5	139941190	139941190	+	Silent	SNP	T	T	C	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
ARID4A	5926	hgsc.bcm.edu;ucsc.edu	37	14	58790270	58790270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52442567	52442567	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
C10orf129	142827	hgsc.bcm.edu;ucsc.edu	37	10	96971678	96971678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
C10orf99	387695	hgsc.bcm.edu	37	10	85944492	85944492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
CCDC148	130940	hgsc.bcm.edu;ucsc.edu	37	2	159033038	159033038	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
CHRFAM7A	89832	hgsc.bcm.edu	37	15	30665281	30665282	+	Frame_Shift_Del	DEL	CA	CA	-	rs67158670	bycluster;byfrequency	TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
CLSPN	63967	hgsc.bcm.edu;ucsc.edu	37	1	36205125	36205125	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
CNOT1	23019	hgsc.bcm.edu;ucsc.edu	37	16	58579383	58579385	+	In_Frame_Del	DEL	GTA	GTA	-	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	GTA	GTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
COL6A1	1291	hgsc.bcm.edu;ucsc.edu	37	21	47420243	47420243	+	Splice_Site	SNP	A	A	C	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
COL6A6	131873	hgsc.bcm.edu;ucsc.edu	37	3	130300711	130300711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
CXXC4	80319	hgsc.bcm.edu;ucsc.edu	37	4	105393489	105393489	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56341042	56341042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
FAM38A	0	hgsc.bcm.edu	37	16	88787608	88787610	+	In_Frame_Del	DEL	CTT	CTT	-	rs150376294	bycluster;by1000genomes	TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
FAM46D	169966	hgsc.bcm.edu;ucsc.edu	37	X	79698230	79698230	+	Silent	SNP	T	T	C	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
GRIK2	2898	hgsc.bcm.edu;ucsc.edu	37	6	102266315	102266315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
HSPA2	3306	hgsc.bcm.edu	37	14	65008972	65008972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
KCTD17	79734	hgsc.bcm.edu	37	22	37455447	37455447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
KHDRBS2	202559	hgsc.bcm.edu	37	6	62604617	62604617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
KIAA0368	23392	hgsc.bcm.edu;ucsc.edu	37	9	114182377	114182377	+	Silent	SNP	C	C	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
KLHL22	84861	hgsc.bcm.edu	37	22	20843449	20843449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
MFAP3L	9848	hgsc.bcm.edu;ucsc.edu	37	4	170926995	170926995	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
MYH15	22989	hgsc.bcm.edu;ucsc.edu	37	3	108211422	108211422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
NBAS	51594	hgsc.bcm.edu;ucsc.edu	37	2	15326915	15326915	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52702660	52702660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
PPP2R3A	5523	hgsc.bcm.edu;ucsc.edu	37	3	135745814	135745814	+	Silent	SNP	C	C	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
PRKD3	23683	hgsc.bcm.edu;ucsc.edu	37	2	37520414	37520414	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
PTCH1	5727	hgsc.bcm.edu	37	9	98231217	98231217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
RGS18	64407	hgsc.bcm.edu	37	1	192150459	192150459	+	Silent	SNP	A	A	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
SCN3A	6328	hgsc.bcm.edu;ucsc.edu	37	2	165953810	165953810	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
SERPINA11	256394	hgsc.bcm.edu;ucsc.edu	37	14	94914808	94914808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
SPOCK3	50859	hgsc.bcm.edu;ucsc.edu	37	4	167656201	167656201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
STMN3	50861	hgsc.bcm.edu;ucsc.edu	37	20	62275589	62275589	+	Silent	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
TAS1R2	80834	hgsc.bcm.edu	37	1	19181061	19181061	+	Silent	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
TMEM109	79073	hgsc.bcm.edu	37	11	60689310	60689310	+	Silent	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
TTI1	9675	hgsc.bcm.edu;ucsc.edu	37	20	36631058	36631058	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
WFIKKN2	124857	hgsc.bcm.edu;ucsc.edu	37	17	48917427	48917427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
ZC3H15	55854	hgsc.bcm.edu;ucsc.edu	37	2	187370523	187370523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
ZDHHC5	25921	hgsc.bcm.edu;ucsc.edu	37	11	57440565	57440565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
ZNF836	162962	hgsc.bcm.edu;ucsc.edu	37	19	52659379	52659379	+	Silent	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	
