Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11273603	11273603	+	Silent	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	MTOR-1439	NM_004958	exon21	c.C3138G	p.T1046T	AATTGAGGTGTTC	.	187	71	129	0	.	4	2	2	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19490300	19490300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	UBR4-612	NM_020765	exon34	c.G4722C	p.K1574N	TACATTCTTCTGT	.	175	70	214	0	.	0	0	0	0	0
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22927186	22927186	+	Silent	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	EPHA8-1380	NM_020526	exon14	c.A2421T	p.P807P	GGCCCCAGAGGCC	.	225	82	249	0	.	0	0	0	0	0
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	85487988	85487988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	MCOLN3-91	NM_018298	exon10	c.G1191T	p.K397N	GTTGTACTTTGCA	.	52	19	27	0	.	0	0	0	0	0
GBP1	2633	broad.mit.edu	37	1	89528891	89528891	+	Silent	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	GBP1-92	NM_002053	exon2	c.C27A	p.G9G	CATTGGGCCTGTC	.	193	9	60	0	.	34	34	0	0	0
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207105906	207105906	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PIGR-92	NM_002644	exon8	c.G1903T	p.G635X	AGCTTCCACCTTG	.	158	66	149	1	.	342	321	21	0	0
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207940508	207940508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CD46-963	NM_172352	exon6	c.C824A	p.T275N	ACAGTACTTGGGA	.	60	23	80	0	.	216	127	89	0	0
RBM34	23029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235318245	235318245	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	RBM34-46	NM_001161533	exon4	c.A548T	p.N183I	CTCTCATTCTTTA	.	266	90	288	0	.	20	7	13	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240371661	240371661	+	Silent	SNP	A	A	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	FMN2-145	NM_020066	exon5	c.A3549C	p.G1183G	AGTGGGAATACCT	.	32	3	44	1	.	0	0	0	0	0
ECD	11319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74896486	74896486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ECD-91	NM_001135752	exon14	c.A1779C	p.K593N	GAAACTTTTGCTG	.	179	75	225	0	.	48	32	16	0	0
COX15	1355	hgsc.bcm.edu	37	10	101491791	101491791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	COX15-227	NM_078470	exon1	c.T16G	p.F6V	GCGGAAAGAGCAA	.	56	18	56	0	.	11	9	2	0	0
E2F8	79733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	19251275	19251275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	E2F8-91	NM_001256372	exon10	c.T1619A	p.L540Q	GGGCTCAGGCCTT	.	410	146	448	0	.	0	0	0	0	0
QSER1	79832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	32954930	32954930	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	QSER1-95	NM_001076786	exon4	c.C1739A	p.S580X	TTGAGTCATCAAC	.	48	14	47	0	.	0	0	0	0	0
MADD	8567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47304129	47304129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	MADD-682	NM_130474	exon9	c.T1667G	p.L556R	GGATCCTTAACCC	.	137	50	138	0	.	11	3	8	0	0
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu	37	12	18658292	18658292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PIK3C2G-1312	NM_004570	exon23	c.G3097A	p.D1033N	GTATGTGACCGTC	.	11	7	16	0	.	0	0	0	0	0
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	41585335	41585335	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PDZRN4-296	NM_001164595	exon2	c.C724T	p.R242X	GGAGGTCGACCAA	.	105	34	56	0	.	0	0	0	0	0
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112184083	112184083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ACAD10-92	NM_001136538	exon15	c.C2344A	p.P782T	TATGCCCCCGAGG	.	339	89	265	0	.	2	0	2	0	0
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	130184819	130184819	+	Silent	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TMEM132D-106	NM_133448	exon2	c.G504C	p.L168L	GACCCTCAGGCAC	.	103	57	96	0	.	0	0	0	0	0
SLC46A3	283537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	29287510	29287510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC46A3-69	NM_181785	exon3	c.T367C	p.Y123H	CAAAATAGCAAAG	.	54	13	68	0	.	57	36	21	0	0
BRCA2	675	hgsc.bcm.edu	37	13	32913098	32913098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	BRCA2-3153	NM_000059	exon11	c.A4606G	p.K1536E	ATTGCAAAGGAAT	.	31	2	31	0	.	0	0	0	0	0
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52548108	52548108	+	Silent	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ATP7B-92	NM_000053	exon2	c.T1248A	p.A416A	TTCTATAGCAGCT	.	245	90	201	0	.	6	2	4	0	0
RNF219	79596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	79190506	79190506	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	RNF219-135	NM_024546	exon6	c.A1390T	p.T464S	ATCCTGTCTTTGG	.	58	25	34	0	.	9	5	4	0	0
PSME2	5721	ucsc.edu	37	14	24613239	24613239	+	Splice_Site	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PSME2-90	NM_002818	exon10	c.498-1G>A	.	AAGTACCTGCCAG	.	420	1	269	0	.	3	3	0	0	0
SDR39U1	56948	hgsc.bcm.edu	37	14	24910963	24910963	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SDR39U1-46	NM_020195	exon4	c.G245C	p.R82P	TCTAGGCGGCTGC	.	74	6	84	0	.	0	0	0	0	0
SPINT1	6692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41146021	41146021	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SPINT1-91	NM_181642	exon5	c.C855T	p.G285G	CTTGGGCAACAAG	.	317	106	391	0	.	99	53	45	0	1
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	43724401	43724401	+	Silent	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TP53BP1-294	NM_001141980	exon17	c.C3666T	p.L1222L	GCTATGGAGCGAC	.	37	13	48	0	.	0	0	0	0	0
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	57730838	57730838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CGNL1-100	NM_001252335	exon3	c.C641G	p.T214R	GTGTGACAGCTAT	.	467	169	625	1	.	3	2	1	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058483	79058483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ADAMTS7-226	NM_014272	exon19	c.T3770C	p.V1257A	TCCGCCACGTCAG	.	94	7	138	2	.	13	13	0	0	0
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	94841734	94841734	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	MCTP2-93	NM_001159643	exon1	c.C240T	p.S80S	GCCCAGCAGTCTG	.	261	80	359	0	.	1	1	0	0	0
KIAA0556	23247	broad.mit.edu	37	16	27786370	27786370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	KIAA0556-141	NM_015202	exon24	c.C4414T	p.R1472W	GATGGCCGGCACA	.	175	4	178	0	.	14	14	0	0	0
FANCA	2175	hgsc.bcm.edu	37	16	89883000	89883000	+	Missense_Mutation	SNP	G	G	C	rs76275444		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	FANCA-1130	NM_000135	exon1	c.C24G	p.N8K	GGCGGAGTTCGGG	.	8	4	2	1	G|0.032;C|0.968	1	1	0	0	0
SLC43A2	124935	hgsc.bcm.edu	37	17	1494129	1494129	+	Missense_Mutation	SNP	G	G	A	rs145755178		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC43A2-91	NM_152346	exon9	c.C1045T	p.L349F	ACTTGAGGATGTT	.	6	3	5	1	G|1.000;A|0.000	126	73	53	0	0
ZNF594	84622	ucsc.edu	37	17	5085331	5085331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF594-71	NM_032530	exon2	c.A2221C	p.T741P	TGAAGGTTTTCTC	.	298	3	246	0	.	30	23	7	0	0
CDRT4	284040	broad.mit.edu	37	17	15341130	15341130	+	Missense_Mutation	SNP	C	C	T	rs139647100		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CDRT4-90	NM_001204477	exon4	c.G419A	p.R140H	GGCTTGCGGGCAA	.	153	6	53	1	C|1.000;T|0.000	26	26	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	914	120	819	126	.	72	14	58	0	0
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29220728	29220728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ATAD5-93	NM_024857	exon21	c.T4857G	p.N1619K	AAACAATCCAGAG	.	126	28	120	0	.	4	2	2	0	0
TANC2	26115	hgsc.bcm.edu;broad.mit.edu	37	17	61466867	61466867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TANC2-24	NM_025185	exon15	c.C2791A	p.L931M	GGGTACCTGAGCA	.	57	28	29	0	.	0	0	0	0	0
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66270212	66270212	+	Splice_Site	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC16A6-90	NM_004694	exon4	c.233-1G>T	.	GGGGAGCTGCCGG	.	102	43	98	1	.	3	0	3	0	0
PTPRM	5797	bcgsc.ca	37	18	7567847	7567847	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PTPRM-228	NM_001105244	exon1	c.T31A	p.L11M	GCGACTTTGGCCG	.	120	44	157	0	.	1	1	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23895311	23895311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TAF4B-71	NM_005640	exon10	c.G1951C	p.D651H	TGTAAAGATGAAC	.	108	3	97	0	.	1	1	0	0	0
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	76754972	76754972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SALL3-155	NM_171999	exon2	c.T2981C	p.I994T	TGGAAATCCACTA	.	86	33	148	0	.	0	0	0	0	0
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2191111	2191111	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	DOT1L-132	NM_032482	exon5	c.C365G	p.P122R	CCGACCCCGAGAA	.	116	41	122	0	.	1	0	1	0	0
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2216711	2216711	+	Silent	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	DOT1L-132	NM_032482	exon20	c.G2355A	p.L785L	GCACCTGAGCCAG	.	105	41	134	1	.	10	6	4	0	0
SLC25A23	79085	hgsc.bcm.edu	37	19	6444308	6444308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC25A23-92	NM_024103	exon9	c.T1076C	p.L359P	TTCTTCAGAGTCT	.	29	2	37	0	.	0	0	0	0	0
ZNF136	7695	broad.mit.edu;ucsc.edu	37	19	12297631	12297631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF136-92	NM_003437	exon4	c.G438T	p.W146C	GTGTTGGAAACCC	.	15	5	34	0	.	7	2	5	0	0
SLC1A6	6511	broad.mit.edu	37	19	15067457	15067457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC1A6-186	NM_005071	exon6	c.G1000A	p.V334I	CCAGGACGGCCAT	.	142	4	206	0	.	0	0	0	0	0
CASP14	23581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15164633	15164633	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CASP14-230	NM_012114	exon4	c.C267T	p.H89H	GGCTCACGGGAGG	.	244	35	281	0	.	0	0	0	0	0
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16918705	16918705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	NWD1-7	NM_001007525	exon18	c.G4045A	p.E1349K	CTGCCCGAGACCC	.	404	153	475	0	.	0	0	0	0	0
FCGBP	8857	hgsc.bcm.edu	37	19	40395978	40395978	+	Silent	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	FCGBP-98	NM_003890	exon15	c.C7419T	p.G2473G	GCAGGTGCCCATG	.	248	41	271	1	.	9	9	0	0	0
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44896570	44896570	+	Missense_Mutation	SNP	C	C	G	rs144077949	byfrequency;alternate_allele	TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF285-94	NM_152354	exon3	c.G76C	p.D26H	CTTTATCCAATAG	.	74	33	67	0	C|0.997;T|0.003	1	1	0	0	0
EML2	24139	hgsc.bcm.edu	37	19	46142624	46142624	+	Missense_Mutation	SNP	A	A	C	rs201822741		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	EML2-154	NM_012155	exon1	c.T11G	p.F4C	GCTCCAAAGCTAC	.	11	4	8	0	A|0.994;C|0.006	1	0	1	0	0
DHDH	27294	hgsc.bcm.edu;broad.mit.edu	37	19	49438360	49438360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	DHDH-90	NM_014475	exon2	c.C194T	p.P65L	AGGACCCGAGCGT	.	10	6	30	1	.	0	0	0	0	0
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53669370	53669370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF665-70	NM_024733	exon4	c.G373C	p.A125P	GTTGAGCTCTTCT	.	196	64	271	0	.	1	0	1	0	0
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26459821	26459821	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	HADHA-91	NM_000182	exon4	c.C216G	p.F72L	TTCTGAGAACTCT	.	246	82	180	0	.	118	61	57	0	0
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27565920	27565920	+	Silent	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	GTF3C2-92	NM_001521	exon4	c.T342A	p.V114V	CTGTTGGGGCCTT	.	227	78	331	1	.	31	31	0	0	0
EML4	27436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	42488420	42488420	+	Silent	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	EML4-3734	NM_019063	exon4	c.T498C	p.A166A	GAATGCTACTCCC	.	115	31	165	1	.	0	0	0	0	0
HAAO	23498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	42994588	42994588	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	HAAO-91	NM_012205	exon10	c.C850G	p.P284A	CCAGGGGCTTCTT	.	67	11	61	0	.	43	27	16	0	0
EDAR	10913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109527287	109527287	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	EDAR-92	NM_022336	exon8	c.G675A	p.P225P	CTTCCCCGGGTGG	.	150	48	207	1	.	5	1	4	0	0
BIN1	274	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	127818193	127818193	+	Missense_Mutation	SNP	C	C	G	rs117721706	byfrequency;alternate_allele	TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	BIN1-655	NM_139346	exon10	c.G788C	p.R263P	CGCAGCCGCGAAA	.	143	47	183	0	C|0.992;T|0.008	0	0	0	0	0
ORC2	4999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201790595	201790595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ORC2-209	NM_006190	exon13	c.G1111T	p.D371Y	GCTGATCCAGTAT	.	218	79	213	1	.	3	3	0	0	0
HELZ2	85441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62193087	62193087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_001037335	exon13	c.A6703G	p.R2235G	TCCTTCTCAGGAG	.	63	23	88	0	.	2	2	0	0	0
LSS	4047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47626684	47626684	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	LSS-90	NM_001001438	exon17	c.1468-2A>C	.	AGCAGCTGAAATC	.	154	59	175	0	.	3	0	3	0	0
ARSA	410	broad.mit.edu	37	22	51063617	51063617	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ARSA-92	NM_001085426	exon9	c.A1486C	p.T496P	GGGGGGTGCAGCC	.	31	7	49	13	.	84	79	5	0	0
TRNT1	51095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	3189651	3189651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TRNT1-90	NM_182916	exon8	c.G1118C	p.C373S	AGCACTGTCTCCT	.	20	8	38	0	.	20	14	6	0	0
OSBPL10	114884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	31774841	31774841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	OSBPL10-69	NM_017784	exon6	c.C1003T	p.L335F	AGCCAAGTGTCCC	.	285	80	318	0	.	16	5	11	0	0
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142274792	142274792	+	Silent	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ATR-1139	NM_001184	exon10	c.T2268A	p.S756S	TAGTTGAGAAGAT	.	128	42	178	0	.	2	2	0	0	0
CRYGS	1427	broad.mit.edu	37	3	186256498	186256498	+	Missense_Mutation	SNP	C	C	T	rs201717880		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CRYGS-90	NM_017541	exon3	c.G524A	p.R175H	ACAATGCGGCGGA	.	217	4	136	0	C|0.999;T|0.001	6	6	0	0	0
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	985220	985220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC26A1-91	NM_022042	exon2	c.C272T	p.S91L	AGCAATGAGTAGG	.	228	82	257	0	.	0	0	0	0	0
ACOX3	8310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8417674	8417674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ACOX3-90	NM_001101667	exon3	c.G197A	p.G66E	TCGGCTCCAGGGG	.	197	74	231	0	.	7	3	4	0	0
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	22390249	22390249	+	Missense_Mutation	SNP	C	C	G	rs76872619		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	GPR125-91	NM_145290	exon19	c.G3045C	p.L1015F	AACAGCCAAAGCC	.	144	57	114	0	C|1.000;T|0.000	125	68	57	0	0
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57248668	57248668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	AASDH-94	NM_181806	exon3	c.T326A	p.I109N	ACAAGGATATACT	.	45	16	72	0	.	1	1	0	0	0
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89039327	89039327	+	Silent	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ABCG2-90	NM_004827	exon7	c.T775C	p.L259L	AGGCCAATAAGGT	.	86	32	99	0	.	3	3	0	0	0
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	115767018	115767018	+	Silent	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	NDST4-94	NM_022569	exon10	c.C2076T	p.I692I	AATGAGGATGGTG	.	128	51	135	0	.	0	0	0	0	0
ASB5	140458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177136796	177136796	+	Silent	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ASB5-228	NM_080874	exon7	c.A945G	p.Q315Q	CTGGAGTTGTGGG	.	56	16	68	0	.	0	0	0	0	0
FAM149A	25854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187077186	187077186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	FAM149A-90	NM_001006655	exon6	c.A416G	p.Q139R	CAGCTCAGCCCGG	.	114	41	132	0	.	89	50	39	0	0
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38504185	38504185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	LIFR-1173	NM_002310	exon10	c.A1330G	p.I444V	AATTAATATCCTT	.	57	18	66	0	.	0	0	0	0	0
RICTOR	253260	broad.mit.edu	37	5	38953603	38953603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	RICTOR-849	NM_152756	exon28	c.G2750C	p.W917S	TCTTCCCACTTAT	.	14	3	25	0	.	4	3	1	0	0
C5orf34	375444	ucsc.edu	37	5	43490825	43490825	+	Silent	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	C5orf34-153	NM_198566	exon11	c.G1587T	p.V529V	TGTTGTCACATAT	.	35	4	41	0	.	0	0	0	0	0
PCDHGA4	56111	hgsc.bcm.edu	37	5	140735218	140735218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_018917	exon1	c.A451G	p.R151G	GGGGCAAGATTTC	.	79	22	110	2	.	0	0	0	0	0
SLC36A3	285641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150660717	150660717	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC36A3-93	NM_001145017	exon10	c.C1125A	p.Y375X	GATAGAGTACATC	.	198	75	186	0	.	0	0	0	0	0
RGS14	10636	hgsc.bcm.edu;broad.mit.edu	37	5	176797996	176797996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	RGS14-226	NM_006480	exon11	c.G1218T	p.K406N	GGAGAAGCACGGC	.	49	16	72	0	.	7	6	1	0	0
SQSTM1	8878	hgsc.bcm.edu	37	5	179248068	179248068	+	Silent	SNP	C	C	T	rs11548639		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SQSTM1-92	NM_003900	exon1	c.C132T	p.C44C	ACCCTGCGAGCGG	.	15	7	23	0	.	20	12	8	0	0
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29395381	29395381	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	OR11A1-23	NM_013937	exon1	c.A38C	p.E13A	ACAAATTCAGTAA	.	98	34	130	0	.	0	0	0	0	0
PNPLA1	285848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36269817	36269817	+	Missense_Mutation	SNP	G	G	A	rs182227800		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PNPLA1-137	NM_001145717	exon6	c.G955A	p.D319N	AAAGGGGATGGAA	.	169	61	217	0	G|0.999;A|0.000	0	0	0	0	0
SEPT7	989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	35912377	35912377	+	Splice_Site	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_001011553	exon4	c.374+1G>A	.	TAATTGGTAAGAA	.	35	13	34	0	.	12	0	12	0	0
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149129443	149129443	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF777-136	NM_015694	exon6	c.G1920A	p.E640E	GTCGCACTCGGGG	.	515	202	366	1	.	20	15	5	0	0
CA9	768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35674197	35674197	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CA9-95	NM_001216	exon1	c.G241T	p.E81X	GGAGAGGAGGATC	.	84	23	112	0	.	1	1	0	0	0
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88201776	88201776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	AGTPBP1-158	NM_015239	exon22	c.A2883T	p.Q961H	CAAGTATTGCAAC	.	110	38	163	1	.	16	10	6	0	0
LONRF3	79836	hgsc.bcm.edu	37	X	118109101	118109101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	LONRF3-289	NM_001031855	exon1	c.G358T	p.A120S	GGCGAGGCGCTGG	.	8	7	7	0	.	0	0	0	0	0
ZMYM6	9204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	35457962	35457962	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZMYM6-93	NM_007167	exon15	c.2019delA	p.K673fs	.	.	165	54	196	0	.	0	0	0	0	0
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9006738	9006738	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	A2ML1-93	NM_144670	exon21	c.2605delA	p.T869fs	.	.	134	72	75	0	.	0	0	0	0	0
ST20	400410	hgsc.bcm.edu;bcgsc.ca	37	15	80191469	80191474	+	Splice_Site	DEL	TATGAG	TATGAG	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	TATGAG	TATGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ST20-68	.	.	.	.	.	.	38	11	45	0	.	0	0	0	0	0
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	7567846	7567846	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PTPRM-228	NM_001105244	exon1	c.30delT	p.T10fs	.	.	129	46	172	0	.	0	0	0	0	0
PTPRM	5797	hgsc.bcm.edu	37	18	7567846	7567847	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PTPRM-228	NM_001105244	exon1	c.30_31del	p.10_11del	.	.	129	21	171	0	.	0	0	0	0	0
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	69472576	69472579	+	Frame_Shift_Del	DEL	GCAC	GCAC	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GCAC	GCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ANTXR1-94	NM_032208	exon18	c.1654_1657del	p.552_553del	.	.	106	22	124	0	.	0	0	0	0	0
CYP2D6	1565	broad.mit.edu	37	22	42523507	42523516	+	Frame_Shift_Del	DEL	AGGGGGACGA	AGGGGGACGA	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	AGGGGGACGA	AGGGGGACGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CYP2D6-136	NM_000106	exon7	c.1106_1115del	p.369_372del	ACACCCAGGGGGA	.	142	13	201	0	.	0	0	0	0	0
PCDHGA4	56111	hgsc.bcm.edu	37	5	140735215	140735218	+	Frame_Shift_Del	DEL	GCAA	GCAA	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GCAA	GCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_018917	exon1	c.448_451del	p.150_151del	.	.	81	19	110	0	.	0	0	0	0	0
HECA	51696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	139495590	139495590	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	HECA-90	NM_016217	exon3	c.1381delA	p.K461fs	.	.	180	59	156	0	.	0	0	0	0	0
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	137593045	137593045	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	COL5A1-524	NM_000093	exon4	c.520delA	p.K174fs	.	.	78	28	89	0	.	0	0	0	0	0
GTF3C2	2976	broad.mit.edu;bcgsc.ca	37	2	27565919	27565920	+	Frame_Shift_Ins	INS	-	-	TGGCCTTT	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	GTF3C2-92	NM_001035521	exon3	c.343_344insAAAGGCCA	p.P115fs	GCTGTTGGGGCCT	.	219	28	315	0	.	0	0	0	0	0
XRCC5	7520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	216981563	216981564	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	XRCC5-970	NM_021141	exon3	c.317_318insC	p.D106fs	.	.	75	24	96	0	.	0	0	0	0	0
TOP3B	8940	hgsc.bcm.edu;broad.mit.edu	37	22	22319734	22319735	+	In_Frame_Ins	INS	-	-	TTG	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TOP3B-538	NM_003935	exon9	c.866_867insCAA	p.S289delinsTS	.	.	55	14	68	0	.	0	0	0	0	0
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140735217	140735218	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_018917	exon1	c.450_451insG	p.A150fs	.	.	77	22	110	0	.	0	0	0	0	0
PRKRIP1	79706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102040095	102040096	+	Splice_Site	DNP	GG	GG	AA	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PRKRIP1		exon3	c.306+1G>A	.	GAGAAGGTCAGTG	.	360.0	147.0	223.0	0.0	.	0	0	0	0	0
