Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
NKRF	0	genome.wustl.edu	36	X	118607987	118607987	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	X	118607987	118607987	G	A	SNP	NKRF	NM_017544.2	human	genbank	54_36p	-1	validated	missense	c.1429	p.R477C	1.000	HMMSmart_SM00358,superfamily_dsRNA-binding domain-like	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_R3H,HMMSmart_SM00393,superfamily_dsRNA-binding domain-like,superfamily_R3H domain	-	no_errors	125	1	0.79	62	11	14.86	9	0	0.00
OR13H1	0	genome.wustl.edu	36	X	130505772	130505772	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	X	130505772	130505772	T	C	SNP	OR13H1	NM_001004486.1	human	genbank	54_36p	+1	provisional	missense	c.44	p.I15T	0.890	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	427	14	3.16	38	219	82.95	NA	NA	NA
uc004ewl.1	0	genome.wustl.edu	36	X	130985068	130985068	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	X	130985068	130985068	G	C	SNP	uc004ewl.1	ENST00000370887	human	ensembl	54_36p	+1	known	missense	c.82	p.G28R	0.001	NULL	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_start_codon	55	1	1.79	2	18	90.00	1	15	93.75
GRIK3	0	genome.wustl.edu	36	1	37080106	37080106	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	1	37080106	37080106	G	A	SNP	GRIK3	NM_000831.3	human	genbank	54_36p	-1	reviewed	missense	c.1348	p.R450W	1.000	HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850,superfamily_SSF55620	-	no_errors	470	5	1.04	109	48	30.19	NA	NA	NA
SPRR4	0	genome.wustl.edu	36	1	151211012	151211012	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	1	151211012	151211012	C	T	SNP	SPRR4	NM_173080.1	human	genbank	54_36p	+1	provisional	missense	c.22	p.R8W	0.928	HMMPfam_Cornifin	HMMPfam_Cornifin	-	no_errors	1083	29	2.59	203	137	39.83	NA	NA	NA
ZNF518B	0	genome.wustl.edu	36	4	10054632	10054632	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	4	10054632	10054632	A	T	SNP	ZNF518B	NM_053042.2	human	genbank	54_36p	-1	validated	missense	c.2419	p.L807I	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	517	7	1.32	139	37	20.90	6	8	57.14
BBS12	0	genome.wustl.edu	36	4	123884068	123884068	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	4	123884068	123884068	A	G	SNP	BBS12	NM_152618.2	human	genbank	54_36p	+1	validated	missense	c.1571	p.Y524C	0.790	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like	-	no_errors	237	3	1.23	152	58	27.10	0	2	100.00
HLA-DRB1	0	genome.wustl.edu	36	6	32656522	32656522	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	6	32656522	32656522	T	G	SNP	HLA-DRB1	NM_002124.2	human	genbank	54_36p	-1	reviewed	missense	c.742	p.I248L	0.956	NULL	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors	245	43	14.93	149	24	13.71	717	1	0.14
DLD	0	genome.wustl.edu	36	7	107343262	107343262	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	7	107343262	107343262	G	A	SNP	DLD	NM_000108.3	human	genbank	54_36p	+1	reviewed	missense	c.760	p.D254N	1.000	HMMPfam_Pyr_redox,HMMPfam_Pyr_redox_2,superfamily_SSF51905	HMMPfam_Pyr_redox,HMMPfam_Pyr_redox_dim,PatternScan_PYRIDINE_REDOX_1,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked_reductase_dimer,superfamily_SSF51905	-	no_errors	220	3	1.33	118	71	37.17	48	36	42.35
ECM2	0	genome.wustl.edu	36	9	94319819	94319819	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	9	94319819	94319819	C	T	SNP	ECM2	NM_001393.2	human	genbank	54_36p	-1	reviewed	missense	c.452	p.G151E	1.000	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors	525	14	2.58	128	101	43.53	2	2	50.00
CACNA1B	0	genome.wustl.edu	36	9	140136178	140136178	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	9	140136178	140136178	G	A	SNP	CACNA1B	NM_000718.2	human	genbank	54_36p	+1	validated	missense	c.6926	p.R2309H	0.988	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors	77	4	4.82	31	24	43.64	NA	NA	NA
FAT3	0	genome.wustl.edu	36	11	92171938	92171938	+	Silent	SNP	G	G	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	11	92171938	92171938	G	T	SNP	FAT3	NM_001008781.2	human	genbank	54_36p	+1	validated	silent	c.6111	p.T2037	0.992	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors	333	1	0.30	67	46	40.00	NA	NA	NA
GNPTAB	0	genome.wustl.edu	36	12	100704096	100704096	+	Silent	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	12	100704096	100704096	G	A	SNP	GNPTAB	NM_024312.3	human	genbank	54_36p	-1	validated	silent	c.396	p.H132	1.000	NULL	HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1	-	no_errors	791	9	1.12	194	130	39.88	56	38	40.43
OR11H12	0	genome.wustl.edu	36	14	18447885	18447885	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	14	18447885	18447885	G	A	SNP	OR11H12	NM_001013354.1	human	genbank	54_36p	+1	provisional	missense	c.292	p.V98I	0.016	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	154	1	0.65	64	29	30.53	NA	NA	NA
SLC38A6	0	genome.wustl.edu	36	14	60586994	60586994	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	14	60586994	60586994	T	A	SNP	SLC38A6	NM_153811.1	human	genbank	54_36p	+1	provisional	missense	c.937	p.S313T	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors	665	15	2.19	155	86	35.39	4	8	66.67
TP53	0	genome.wustl.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	17	7519128	7519128	C	T	SNP	TP53	NM_000546.4	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176Y	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors	691	18	2.49	46	156	76.47	1	81	98.78
MYO5B	0	genome.wustl.edu	36	18	45772699	45772699	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	18	45772699	45772699	T	C	SNP	MYO5B	NM_001080467.1	human	genbank	54_36p	-1	provisional	missense	c.713	p.N238S	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	1810	20	1.09	96	168	61.99	1	0	0.00
KIAA1683	0	genome.wustl.edu	36	19	18237918	18237918	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e85a885-3db1-4382-a10d-7cdce016ddb4	fb24b4e8-ad6e-4397-97f4-1421fe8abb24	19	18237918	18237918	T	C	SNP	KIAA1683	NM_025249.1	human	genbank	54_36p	-1	validated	missense	c.1432	p.K478E	0.020	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	517	13	2.44	92	53	36.55	3	2	40.00
