Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
GPR157	80045	broad.mit.edu	37	1	9171478	9171478	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:9171478C>T	uc001apq.1	-	2	597	c.454G>A	c.(454-456)GTG>ATG	p.V152M	GPR157_uc010oad.1_Missense_Mutation_p.V152M|GPR157_uc001apr.2_Missense_Mutation_p.V152M	NM_024980	NP_079256	Q5UAW9	GP157_HUMAN	G protein-coupled receptor 157	152	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_lung(157;0.185)	all_epithelial(116;5.02e-20)|all_lung(118;3.6e-06)|Lung NSC(185;7.93e-06)|Renal(390;0.000147)|Breast(348;0.000688)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.16e-07)|COAD - Colon adenocarcinoma(227;7.73e-05)|Kidney(185;0.000252)|KIRC - Kidney renal clear cell carcinoma(229;0.000917)|STAD - Stomach adenocarcinoma(132;0.00178)|BRCA - Breast invasive adenocarcinoma(304;0.00186)|READ - Rectum adenocarcinoma(331;0.0642)		CCCACAGACACGTCCGAGGCG	0.607											OREG0013073	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	17					0	0	0.041601	0	0	
DEPDC1	55635	broad.mit.edu	37	1	68949689	68949689	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:68949689T>A	uc001dem.3	-	7	971	c.854A>T	c.(853-855)GAT>GTT	p.D285V	DEPDC1_uc001dej.3_5'Flank|DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Missense_Mutation_p.D285V	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	285	Rho-GAP.				intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		TTCAGGGAGATCTAGAAAATA	0.308													40	37					0	0	0.048971	0	0	
LPHN2	23266	broad.mit.edu	37	1	82416098	82416098	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:82416098A>T	uc001dit.3	+	7	1605	c.1424A>T	c.(1423-1425)AAG>ATG	p.K475M	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.K475M|LPHN2_uc001div.2_Missense_Mutation_p.K475M|LPHN2_uc009wcd.2_Missense_Mutation_p.K475M|LPHN2_uc001diw.2_Missense_Mutation_p.K46M	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	475	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TTAGACTCCAAGGGGATAAAG	0.418													31	23					0	0	0.037714	0	0	
ASH1L	55870	broad.mit.edu	37	1	155449512	155449512	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:155449512C>T	uc009wqq.2	-	3	3629	c.3149G>A	c.(3148-3150)AGA>AAA	p.R1050K	ASH1L_uc001fkt.2_Missense_Mutation_p.R1050K|ASH1L_uc009wqr.1_Missense_Mutation_p.R1050K	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1050					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			GCGACCTCTTCTCTTTCCTAT	0.418													23	51					0	0	0.014323	0	0	
HMCN1	83872	broad.mit.edu	37	1	186083167	186083167	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:186083167A>C	uc001grq.1	+	73	11417	c.11188A>C	c.(11188-11190)ACT>CCT	p.T3730P		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3730	Ig-like C2-type 36.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAATAAGTCAACTGTATTGGA	0.418													34	111					0	0	0.021022	0	0	
CRB1	23418	broad.mit.edu	37	1	197391073	197391073	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:197391073C>T	uc001gtz.2	+	6	2250	c.2115C>T	c.(2113-2115)CCC>CCT	p.P705P	CRB1_uc010poz.1_Silent_p.P636P|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.P593P|CRB1_uc010ppb.1_Silent_p.P705P|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.P186P|CRB1_uc001gub.1_Silent_p.P354P	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	705	Extracellular (Potential).|EGF-like 12.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATGAAGGCCCCAACTGTCTGA	0.527													5	47					0	0	0.021553	0	0	
C1orf115	79762	broad.mit.edu	37	1	220870050	220870050	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:220870050A>T	uc001hmp.1	+	2	523	c.406A>T	c.(406-408)AGC>TGC	p.S136C		NM_024709	NP_078985	Q9H7X2	CA115_HUMAN	hypothetical protein LOC79762	136	Helical; (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0273)		GGTAGCCACCAGCGTGGTATC	0.597													9	98					0	0	0.047766	0	0	
LYST	1130	broad.mit.edu	37	1	235993555	235993555	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:235993555G>C	uc001hxj.2	-	3	338	c.163C>G	c.(163-165)CTT>GTT	p.L55V	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.L55V|LYST_uc001hxm.2_RNA|LYST_uc001hxn.1_Missense_Mutation_p.L55V	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	55					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			AGCTTGGTAAGTAATAGAAAT	0.408									Chediak-Higashi_syndrome				11	63					0	0	0.020292	0	0	
BMI1	648	broad.mit.edu	37	10	22616977	22616977	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr10:22616977G>A	uc001irh.2	+	6	1054	c.415G>A	c.(415-417)GAC>AAC	p.D139N	BMI1_uc009xkg.2_Missense_Mutation_p.D282N	NM_005180	NP_005171	P35226	BMI1_HUMAN	BMI1 polycomb ring finger oncogene	139					hemopoiesis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fibroblast proliferation|positive regulation of ubiquitin-protein ligase activity|segment specification|transcription, DNA-dependent	cytoplasm|nucleolus|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			ovary(1)|skin(1)	2						TGAATTCTTTGACCAGAACAG	0.308													35	82					0	0	0.017118	0	0	
ABCC2	1244	broad.mit.edu	37	10	101577118	101577118	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr10:101577118G>T	uc001kqf.2	+	17	2287	c.2148G>T	c.(2146-2148)AAG>AAT	p.K716N		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	716	Cytoplasmic (By similarity).|ABC transporter 1.					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GCACCATAAAGGACAACATCC	0.488													26	33					2.70662e-09	2.8412e-09	0.041601	1	0	
HMX2	3167	broad.mit.edu	37	10	124909459	124909459	+	Silent	SNP	G	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr10:124909459G>T	uc001lhc.1	+	2	899	c.642G>T	c.(640-642)GCG>GCT	p.A214A		NM_005519	NP_005510	A2RU54	HMX2_HUMAN	H6 family homeobox 2	214					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_neural(114;0.169)|Colorectal(57;0.207)|Glioma(114;0.222)		Colorectal(40;0.123)|COAD - Colon adenocarcinoma(40;0.141)		AGCTGGAGGCGGCCAACATGG	0.677													4	12					0.00909568	0.00929129	0.009096	1	0	
AP2A2	161	broad.mit.edu	37	11	992584	992584	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:992584A>G	uc001lss.2	+	11	1532	c.1351A>G	c.(1351-1353)ATT>GTT	p.I451V	AP2A2_uc001lst.1_Missense_Mutation_p.I452V|AP2A2_uc009yco.1_RNA|AP2A2_uc009ycq.1_Missense_Mutation_p.I42V	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	451					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		CTTGATCCGAATTGCTGGTGA	0.552													6	40					0	0	0.029380	0	0	
RBMXL2	27288	broad.mit.edu	37	11	7111074	7111074	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:7111074C>T	uc001mfc.2	+	1	910	c.723C>T	c.(721-723)CGC>CGT	p.R241R		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	241	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ACACCCACCGCGATTACGGCC	0.657													3	39					0	0	0.014758	0	0	
MS4A14	84689	broad.mit.edu	37	11	60183029	60183029	+	Silent	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:60183029T>C	uc001npj.2	+	5	1153	c.588T>C	c.(586-588)AAT>AAC	p.N196N	MS4A14_uc001npi.2_Silent_p.N84N|MS4A14_uc001npn.2_5'UTR|MS4A14_uc001npk.2_Silent_p.N179N|MS4A14_uc001npl.2_5'UTR|MS4A14_uc001npm.2_5'UTR	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	196						integral to membrane	receptor activity			breast(1)	1						CAACAACAAATGCACAATCTG	0.383													4	53					0	0	0.038147	0	0	
SF1	7536	broad.mit.edu	37	11	64536711	64536711	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:64536711G>A	uc001obb.1	-	7	1140	c.763C>T	c.(763-765)CGG>TGG	p.R255W	SF1_uc010rnm.1_5'Flank|SF1_uc010rnn.1_Missense_Mutation_p.R229W|SF1_uc001oaz.1_Missense_Mutation_p.R380W|SF1_uc001oba.1_Missense_Mutation_p.R255W|SF1_uc001obc.1_Missense_Mutation_p.R255W|SF1_uc001obd.1_Missense_Mutation_p.R255W|SF1_uc001obe.1_Missense_Mutation_p.R140W|SF1_uc010rno.1_Missense_Mutation_p.R140W	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	255				R->A: Slightly decreases RNA-binding.	nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						TCGTCTTCCCGAAGGGTCCCA	0.463													22	28					0	0	0.034045	0	0	
PELI3	246330	broad.mit.edu	37	11	66240870	66240870	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:66240870C>T	uc001oic.3	+	6	779	c.615C>T	c.(613-615)GCC>GCT	p.A205A	PELI3_uc001oib.2_Silent_p.A205A|PELI3_uc001oid.3_Silent_p.A181A|PELI3_uc001oie.3_Silent_p.A56A|PELI3_uc010rpd.1_Silent_p.A46A	NM_145065	NP_659502	Q8N2H9	PELI3_HUMAN	pellino 3 alpha isoform 1	205						cytosol	protein binding			ovary(1)	1						GCATCTATGCCGCTGGCTTCG	0.622													6	87					0	0	0.038147	0	0	
ODZ4	26011	broad.mit.edu	37	11	78467865	78467865	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:78467865T>G	uc001ozl.3	-	19	3204	c.2741A>C	c.(2740-2742)AAC>ACC	p.N914T		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	914	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATCAAAGGGGTTCTCCCCGGG	0.577													5	22					0	0	0.021553	0	0	
ATM	472	broad.mit.edu	37	11	108214049	108214049	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:108214049G>A	uc001pkb.1	+	57	8754	c.8369G>A	c.(8368-8370)AGA>AAA	p.R2790K	ATM_uc009yxr.1_Missense_Mutation_p.R2790K|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.R1442K	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2790	PI3K/PI4K.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		GCTCATAAAAGATACAGGCCA	0.398			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			21	80					0	0	0.016522	0	0	
TECTA	7007	broad.mit.edu	37	11	121038845	121038845	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:121038845G>A	uc010rzo.1	+	18	5669	c.5669G>A	c.(5668-5670)CGC>CAC	p.R1890H		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1890	ZP.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ACCAGGGACCGCACGATCAAT	0.468													42	94					0	0	0.042209	0	0	
OR8D1	283159	broad.mit.edu	37	11	124180557	124180557	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:124180557C>A	uc010sag.1	-	1	106	c.106G>T	c.(106-108)GTG>TTG	p.V36L		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ACTGTGACCACATAGATTCCC	0.493													15	143					2.4624e-09	2.5992e-09	0.049695	1	0	
CDON	50937	broad.mit.edu	37	11	125889542	125889542	+	Silent	SNP	G	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:125889542G>T	uc009zbw.2	-	4	596	c.468C>A	c.(466-468)ATC>ATA	p.I156I	CDON_uc001qdc.3_Silent_p.I156I|CDON_uc001qdd.3_RNA|CDON_uc009zbx.2_Silent_p.I156I	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	156	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		ATTTTCCCCGGATTTTATAGC	0.453													24	163					2.61193e-14	2.78802e-14	0.041601	1	0	
NTM	50863	broad.mit.edu	37	11	132184473	132184473	+	Silent	SNP	A	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr11:132184473A>G	uc001qgp.2	+	6	1474	c.810A>G	c.(808-810)AAA>AAG	p.K270K	NTM_uc001qgm.2_Silent_p.K270K|NTM_uc010sch.1_Silent_p.K261K|NTM_uc010sci.1_Silent_p.K270K|NTM_uc010scj.1_Silent_p.K229K|NTM_uc001qgo.2_Silent_p.K270K|NTM_uc001qgq.2_Silent_p.K270K|NTM_uc001qgr.2_Silent_p.K52K	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	270	Ig-like C2-type 3.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						AAGGGGTGAAAGTGGAAAACA	0.428													12	38					0	0	0.013537	0	0	
RASSF8	11228	broad.mit.edu	37	12	26217559	26217559	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr12:26217559C>T	uc001rgx.2	+	3	453	c.232C>T	c.(232-234)CGA>TGA	p.R78*	RASSF8_uc001rgy.2_Nonsense_Mutation_p.R78*|RASSF8_uc001rgz.2_Nonsense_Mutation_p.R78*|RASSF8_uc009zjd.1_Nonsense_Mutation_p.R78*|RASSF8_uc009zje.1_Nonsense_Mutation_p.R78*	NM_007211	NP_009142	Q8NHQ8	RASF8_HUMAN	Ras association (RalGDS/AF-6) domain family	78	Ras-associating.				signal transduction						0	Colorectal(261;0.0847)					GCTCATTCTACGACGAACTGG	0.468													39	89					0	0	0.045515	0	0	
ADAMTS20	80070	broad.mit.edu	37	12	43925975	43925975	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr12:43925975G>A	uc010skx.1	-	3	477	c.477C>T	c.(475-477)AAC>AAT	p.N159N		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	159						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AATATTCACCGTTCTGTCCTT	0.338													3	56					0	0	0.004672	0	0	
KRT73	319101	broad.mit.edu	37	12	53005086	53005086	+	Missense_Mutation	SNP	G	A	A	rs150273425		TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr12:53005086G>A	uc001sas.2	-	6	1047	c.1012C>T	c.(1012-1014)CGG>TGG	p.R338W		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	338	Rod.|Coil 2.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCCCCATGCCGGCCGGCTGCT	0.537													4	68					0	0	0.009096	0	0	
XPOT	11260	broad.mit.edu	37	12	64812808	64812808	+	Silent	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr12:64812808C>G	uc001ssb.2	+	6	849	c.423C>G	c.(421-423)CTC>CTG	p.L141L	XPOT_uc009zqm.1_Silent_p.L51L	NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	141	Necessary for interaction with Ran, nuclear localization and nuclear import.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		GAGTAGATCTCTACCTGCGAA	0.398													4	146					0	0	0.021553	0	0	
PPFIA2	8499	broad.mit.edu	37	12	81660768	81660768	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr12:81660768T>G	uc001szo.1	-	30	3679	c.3518A>C	c.(3517-3519)AAC>ACC	p.N1173T	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	1072										ovary(3)|lung(2)|pancreas(1)	6						GGCCAAGAGGTTATTGTATTC	0.358													3	16					0	0	0.021553	0	0	
UBE3B	89910	broad.mit.edu	37	12	109936111	109936111	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr12:109936111G>A	uc001top.2	+	11	1496	c.893G>A	c.(892-894)CGT>CAT	p.R298H	UBE3B_uc001toq.2_Missense_Mutation_p.R298H|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Missense_Mutation_p.R298H	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	298					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						GATCGATGCCGTGATGTATGT	0.438													4	184					0	0	0.009096	0	0	
MAB21L1	4081	broad.mit.edu	37	13	36049983	36049983	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr13:36049983G>A	uc001uvc.2	-	1	850	c.293C>T	c.(292-294)GCG>GTG	p.A98V	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	98					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		CTTCAGCACCGCGCAGCCGGG	0.597													22	98					0	0	0.014323	0	0	
CCNA1	8900	broad.mit.edu	37	13	37014131	37014131	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr13:37014131A>G	uc001uvr.3	+	6	1259	c.909A>G	c.(907-909)ATA>ATG	p.I303M	CCNA1_uc010teo.1_Missense_Mutation_p.I259M|CCNA1_uc010abq.2_Missense_Mutation_p.I259M|CCNA1_uc010abp.2_Missense_Mutation_p.I259M|CCNA1_uc001uvs.3_Missense_Mutation_p.I302M|CCNA1_uc010abr.2_Intron	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	303					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		ATGAAGAGATATATCCTCCTG	0.408													12	26					0	0	0.016723	0	0	
STOML3	161003	broad.mit.edu	37	13	39542650	39542650	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr13:39542650C>T	uc001uwx.2	-	6	676	c.538G>A	c.(538-540)GAA>AAA	p.E180K	STOML3_uc010tez.1_Missense_Mutation_p.E171K	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	180	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		CCCCACAGTTCGGTGGCATCA	0.468													21	118					0	0	0.027356	0	0	
MYCBP2	23077	broad.mit.edu	37	13	77642839	77642839	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr13:77642839G>C	uc001vkf.2	-	71	12009	c.11918C>G	c.(11917-11919)GCC>GGC	p.A3973G	MYCBP2_uc010aev.2_Missense_Mutation_p.A3377G|MYCBP2_uc001vke.2_Missense_Mutation_p.A590G	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3973					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		AAAGCAGTAGGCATCAGAGGA	0.478													16	75					0	0	0.038395	0	0	
SLITRK5	26050	broad.mit.edu	37	13	88329875	88329875	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr13:88329875C>T	uc001vln.2	+	2	2451	c.2232C>T	c.(2230-2232)CCC>CCT	p.P744P	SLITRK5_uc010tic.1_Silent_p.P503P	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	744	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					TGAAGACGCCCGCGGGCCACG	0.657													22	72					0	0	0.021523	0	0	
FAM155A	728215	broad.mit.edu	37	13	108518852	108518852	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr13:108518852A>T	uc001vql.2	-	1	609	c.93T>A	c.(91-93)GAT>GAA	p.D31E		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	31						integral to membrane	binding			skin(1)	1						CCCTCTCGGAATCGATGAACG	0.527													14	305					0	0	0.055883	0	0	
POTEG	404785	broad.mit.edu	37	14	19553567	19553567	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr14:19553567G>A	uc001vuz.1	+	1	203	c.151G>A	c.(151-153)GAT>AAT	p.D51N	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	51										ovary(1)	1						AGACCACGACGATTCTGCTAT	0.602													16	598					0	0	0.037714	0	0	
MYH6	4624	broad.mit.edu	37	14	23856775	23856775	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr14:23856775T>C	uc001wjv.2	-	32	4680	c.4613A>G	c.(4612-4614)GAG>GGG	p.E1538G		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1538	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTCCAGCTTCTCCACCTCCAG	0.592													20	87					0	0	0.016522	0	0	
FOXG1	2290	broad.mit.edu	37	14	29237173	29237173	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr14:29237173C>G	uc001wqe.2	+	1	887	c.688C>G	c.(688-690)CGC>GGC	p.R230G		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	230	Fork-head.				axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		GAACTCCATCCGCCACAATCT	0.592													19	41					0	0	0.055883	0	0	
EIF2B2	8892	broad.mit.edu	37	14	75473366	75473366	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr14:75473366C>G	uc001xrc.1	+	6	862	c.780C>G	c.(778-780)CAC>CAG	p.H260Q		NM_014239	NP_055054	P49770	EI2BB_HUMAN	eukaryotic translation initiation factor 2B,	260					cellular response to stimulus|myelination|oligodendrocyte development|ovarian follicle development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	ATP binding|GTP binding|protein binding|translation initiation factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00661)		CAGCAAAACACCATTCCACCC	0.517													79	247					0	0	0.048971	0	0	
MARK3	4140	broad.mit.edu	37	14	103928798	103928798	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr14:103928798G>A	uc001ymz.3	+	7	1206	c.540G>A	c.(538-540)AAG>AAA	p.K180K	MARK3_uc001ymx.3_Silent_p.K180K|MARK3_uc001ymw.3_Silent_p.K180K|MARK3_uc001yna.3_Silent_p.K180K|MARK3_uc001ymy.3_Silent_p.K180K|MARK3_uc010awp.2_Silent_p.K203K	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	180	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			GAGACCTCAAGGTGAGTAGAA	0.448													12	45					0	0	0.020292	0	0	
AHNAK2	113146	broad.mit.edu	37	14	105413100	105413100	+	Silent	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr14:105413100C>G	uc010axc.1	-	7	8808	c.8688G>C	c.(8686-8688)CTG>CTC	p.L2896L	AHNAK2_uc001ypx.2_Silent_p.L2796L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2896						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCACCTTGGGCAGGTGCCCTT	0.637													33	182					0	0	0.030466	0	0	
ADAM6	8755	broad.mit.edu	37	14	106208484	106208484	+	RNA	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr14:106208484G>A	uc010tyt.1	-	3627		c.58730C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Missense_Mutation_p.T5I|uc001ysf.2_Missense_Mutation_p.T5I					Parts of antibodies, mostly variable regions.												0						GACCTCAGGGGTCCGGGAGAT	0.587													11	96					0	0	0.013537	0	0	
MKRN3	7681	broad.mit.edu	37	15	23811829	23811829	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr15:23811829G>A	uc001ywh.3	+	1	1376	c.900G>A	c.(898-900)TCG>TCA	p.S300S	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Silent_p.S300S	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	300						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		TGGAACTCTCGTTTGCTGTGC	0.532													3	27					0	0	0.004672	0	0	
FMN1	342184	broad.mit.edu	37	15	33261313	33261313	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr15:33261313A>C	uc001zhf.3	-	4	1920	c.1920T>G	c.(1918-1920)AAT>AAG	p.N640K		NM_001103184	NP_001096654	Q68DA7	FMN1_HUMAN	formin 1	863					actin cytoskeleton organization	actin cytoskeleton|adherens junction|cytoplasm|nucleus	actin binding			ovary(1)	1		all_lung(180;1.14e-07)		all cancers(64;3.05e-15)|Epithelial(43;1.67e-10)|GBM - Glioblastoma multiforme(186;4.95e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0262)		CCTTCTGCTGATTTGATGCCA	0.567													3	16					0	0	0.014758	0	0	
TGM5	9333	broad.mit.edu	37	15	43552469	43552469	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr15:43552469T>A	uc001zrd.1	-	3	225	c.217A>T	c.(217-219)ACT>TCT	p.T73S	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	73					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	ACAGCCCGAGTCCCCAAGGCC	0.642													7	26					0	0	0.038147	0	0	
DUOX1	53905	broad.mit.edu	37	15	45428734	45428735	+	Missense_Mutation	DNP	GC	TT	TT	rs147597074		TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr15:45428734_45428735GC>TT	uc001zus.1	+	10	1279_1280	c.933_934GC>TT	c.(931-936)CGGCCA>CGTTCA	p.P312S	DUOX1_uc001zut.1_Missense_Mutation_p.P312S|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	312	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CAGGATACCGGCCATTTCTGGA	0.589													22	65					0	0	0.004672	0	0	
KIAA1024	23251	broad.mit.edu	37	15	79748518	79748518	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr15:79748518T>A	uc002bew.1	+	2	104	c.29T>A	c.(28-30)TTC>TAC	p.F10Y	KIAA1024_uc010unk.1_Missense_Mutation_p.F10Y	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	10						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						ACTTCCCTCTTCTTGGTGAAG	0.458													32	28					0	0	0.015359	0	0	
AKAP13	11214	broad.mit.edu	37	15	86225415	86225415	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr15:86225415C>T	uc002blv.1	+	15	5298	c.5128C>T	c.(5128-5130)CAC>TAC	p.H1710Y	AKAP13_uc002blt.1_Missense_Mutation_p.H1692Y|AKAP13_uc002blu.1_Missense_Mutation_p.H1714Y|AKAP13_uc010bnf.1_Missense_Mutation_p.H332Y|AKAP13_uc002blw.1_Missense_Mutation_p.H177Y|AKAP13_uc002blx.1_5'UTR|AKAP13_uc010bne.1_Missense_Mutation_p.H363Y	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1710					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CAGTACCTTCCACAATACCAG	0.328													13	58					0	0	0.038395	0	0	
WDR93	56964	broad.mit.edu	37	15	90281389	90281389	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr15:90281389C>T	uc002boj.2	+	16	1984	c.1883C>T	c.(1882-1884)CCT>CTT	p.P628L	WDR93_uc010bnr.2_Missense_Mutation_p.P600L|WDR93_uc010upz.1_Missense_Mutation_p.P345L	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	628					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TGTACCATTCCTCAAAGGGAC	0.458													59	326					0	0	0.048971	0	0	
OR2C1	4993	broad.mit.edu	37	16	3406257	3406257	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr16:3406257G>C	uc002cuw.1	+	1	369	c.317G>C	c.(316-318)TGG>TCG	p.W106S		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTCTTCCTTTGGCTGGGGGCC	0.572													4	33					0	0	0.009096	0	0	
TRAP1	10131	broad.mit.edu	37	16	3714317	3714317	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr16:3714317C>T	uc002cvt.3	-	13	1616	c.1527G>A	c.(1525-1527)GAG>GAA	p.E509E	TRAP1_uc002cvs.2_Silent_p.E300E|TRAP1_uc010uxf.1_Silent_p.E456E|uc002cvu.2_RNA	NM_016292	NP_057376	Q12931	TRAP1_HUMAN	TNF receptor-associated protein 1 precursor	509					cellular response to oxidative stress|protein folding	mitochondrion	ATP binding|tumor necrosis factor receptor binding|unfolded protein binding			central_nervous_system(1)	1		Ovarian(90;0.0261)				AGGGTGAGTGCTCTGCCAGGT	0.647													3	16					0	0	0.004672	0	0	
PRM1	5619	broad.mit.edu	37	16	11375074	11375074	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr16:11375074G>A	uc002dav.2	-	1	119	c.22C>T	c.(22-24)CGC>TGC	p.R8C	C16orf75_uc002daq.1_Intron	NM_002761	NP_002752	P04553	HSP1_HUMAN	protamine 1	8					chromosome condensation|multicellular organismal development	nucleoplasm|nucleosome	DNA binding				0						CTCTGGCTGCGACAGCATCTG	0.602													24	60					0	0	0.015359	0	0	
TMCO7	79613	broad.mit.edu	37	16	68893968	68893968	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr16:68893968G>T	uc002ewi.3	+	2	288	c.276G>T	c.(274-276)TGG>TGT	p.W92C	TMCO7_uc002ewh.2_Missense_Mutation_p.W92C	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	92						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		ATGTCACTTGGAGTTTTACCT	0.433													27	57					3.65163e-15	3.91983e-15	0.030593	1	0	
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333													2	4					0	0	0.004672	0	0	
DDX19B	11269	broad.mit.edu	37	16	70351425	70351425	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr16:70351425A>G	uc002eyo.2	+	5	452	c.323A>G	c.(322-324)TAT>TGT	p.Y108C	DDX19B_uc010vly.1_Missense_Mutation_p.Y108C|DDX19A_uc002eys.2_Intron|DDX19B_uc010vlv.1_Intron|DDX19B_uc010vlw.1_5'UTR|DDX19B_uc002eyp.2_Intron|DDX19B_uc002eyq.2_5'UTR|DDX19B_uc002eyr.2_Intron|DDX19B_uc010vlx.1_Intron|uc002eyt.2_Intron	NM_007242	NP_009173	Q9UMR2	DD19B_HUMAN	DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform	108	Q motif.				mRNA export from nucleus|protein transport|transmembrane transport	cytoplasm|nuclear membrane|nuclear pore	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			kidney(1)	1		Ovarian(137;0.0694)				CAAGGAGTCTATGCCATGGGT	0.413													4	92					0	0	0.014758	0	0	
CNTNAP4	85445	broad.mit.edu	37	16	76555129	76555129	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr16:76555129T>C	uc002feu.1	+	18	2843	c.2458T>C	c.(2458-2460)TTT>CTT	p.F820L	CNTNAP4_uc002fev.1_Missense_Mutation_p.F684L|CNTNAP4_uc010chb.1_Missense_Mutation_p.F747L|CNTNAP4_uc002fex.1_Missense_Mutation_p.F823L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	820	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGTATCTTTCTTTTTTAAGAC	0.403													36	92					0	0	0.023175	0	0	
ADAMTS18	170692	broad.mit.edu	37	16	77327122	77327122	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr16:77327122G>A	uc002ffc.3	-	20	3459	c.3040C>T	c.(3040-3042)CGT>TGT	p.R1014C	ADAMTS18_uc010chc.1_Missense_Mutation_p.R602C	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1014	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AGGAGTTCACGCTTCCTCACC	0.512													11	79					0	0	0.024245	0	0	
CCDC42	146849	broad.mit.edu	37	17	8647423	8647423	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:8647423G>T	uc002gln.2	-	2	390	c.163C>A	c.(163-165)CAT>AAT	p.H55N	CCDC42_uc002glo.2_Missense_Mutation_p.H55N	NM_144681	NP_653282	Q96M95	CCD42_HUMAN	coiled-coil domain containing 42 isoform 1	55	Potential.									ovary(1)	1						ATAGTTTGATGCATGATTTCT	0.562													16	48					1.64113e-05	1.71327e-05	0.055883	1	0	
MYH13	8735	broad.mit.edu	37	17	10233733	10233733	+	Silent	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:10233733C>G	uc002gmk.1	-	21	2496	c.2406G>C	c.(2404-2406)CGG>CGC	p.R802R		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	802	IQ.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TGAACTCCACCCGCATCAGGT	0.547													5	19					0	0	0.038147	0	0	
MYH13	8735	broad.mit.edu	37	17	10258081	10258081	+	Silent	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:10258081G>C	uc002gmk.1	-	11	1011	c.921C>G	c.(919-921)ACC>ACG	p.T307T		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	307	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CGAAGGGGTTGGTGGAGATCA	0.468													5	96					0	0	0.021553	0	0	
MYH1	4619	broad.mit.edu	37	17	10404711	10404711	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:10404711C>T	uc002gmo.2	-	27	3548	c.3454G>A	c.(3454-3456)GAG>AAG	p.E1152K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1152	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCCAGCCTCTCGCTGATCTCC	0.617													16	108					0	0	0.033300	0	0	
MAP2K3	5606	broad.mit.edu	37	17	21202209	21202209	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:21202209T>C	uc002gys.2	+	3	401	c.136T>C	c.(136-138)TCC>CCC	p.S46P	MAP2K3_uc002gyt.2_Missense_Mutation_p.S17P|MAP2K3_uc002gyu.2_Missense_Mutation_p.S17P	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	46					activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		GAACCTGGACTCCCGGACCTT	0.617													4	74					0	0	0.029380	0	0	
EFTUD2	9343	broad.mit.edu	37	17	42929086	42929086	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:42929086G>A	uc002ihn.2	-	27	3076	c.2815C>T	c.(2815-2817)CGT>TGT	p.R939C	EFTUD2_uc010wje.1_Missense_Mutation_p.R904C|EFTUD2_uc010wjf.1_Missense_Mutation_p.R929C	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	939						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				ACCTTCCTACGGCGGGTTTTG	0.562													11	3					0	0	0.010729	0	0	
TBKBP1	9755	broad.mit.edu	37	17	45773677	45773677	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:45773677C>T	uc002ilu.2	+	1	1048	c.199C>T	c.(199-201)CGC>TGC	p.R67C		NM_014726	NP_055541	A7MCY6	TBKB1_HUMAN	TBK1 binding protein 1	67	Potential.				innate immune response						0						CACCCTCCGACGCCGCCTCAA	0.602													40	32					0	0	0.042209	0	0	
TEX14	56155	broad.mit.edu	37	17	56651574	56651574	+	Silent	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:56651574T>C	uc010dcz.1	-	23	3613	c.3495A>G	c.(3493-3495)TCA>TCG	p.S1165S	TEX14_uc002iwr.1_Silent_p.S1159S|TEX14_uc002iws.1_Silent_p.S1119S|TEX14_uc010dda.1_Silent_p.S899S	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	1165						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GTTCCTTTGGTGACTCCTTTG	0.358													15	34					0	0	0.038395	0	0	
ENGASE	64772	broad.mit.edu	37	17	77082221	77082221	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr17:77082221G>A	uc002jwv.2	+	14	2030	c.2022G>A	c.(2020-2022)CCG>CCA	p.P674P	ENGASE_uc002jww.2_Silent_p.P379P	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	674						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						ATGACTCTCCGGGCAGGGAGC	0.632													22	92					0	0	0.018920	0	0	
DSG3	1830	broad.mit.edu	37	18	29038467	29038467	+	Silent	SNP	C	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr18:29038467C>A	uc002kws.2	+	4	385	c.276C>A	c.(274-276)ATC>ATA	p.I92I		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	92	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GAGTGGGAATCGATCAGCCGC	0.438													21	31					7.33628e-21	7.91984e-21	0.014323	1	0	
CNDP2	55748	broad.mit.edu	37	18	72168606	72168606	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr18:72168606C>T	uc002llm.1	+	3	265	c.103C>T	c.(103-105)CCG>TCG	p.P35S	CNDP2_uc002lln.1_Missense_Mutation_p.P35S|CNDP2_uc002llo.2_Missense_Mutation_p.P35S	NM_018235	NP_060705	Q96KP4	CNDP2_HUMAN	CNDP dipeptidase 2	35						cytoplasm	carboxypeptidase activity|metal ion binding|metallopeptidase activity|protein binding|tripeptidase activity			ovary(2)|skin(1)	3		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.22)		GTCTGCGTGGCCGGAGAAGAG	0.502													8	47					0	0	0.038147	0	0	
MUC16	94025	broad.mit.edu	37	19	9058529	9058529	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr19:9058529G>A	uc002mkp.2	-	3	29121	c.28917C>T	c.(28915-28917)GAC>GAT	p.D9639D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9641	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATCGGAGATGTCTAGTGACA	0.502													17	59					0	0	0.038395	0	0	
NWD1	284434	broad.mit.edu	37	19	16872810	16872810	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr19:16872810G>A	uc002neu.3	+	8	2416	c.1994G>A	c.(1993-1995)CGT>CAT	p.R665H	NWD1_uc002net.3_Missense_Mutation_p.R530H|NWD1_uc002nev.3_Missense_Mutation_p.R459H			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	665							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAGGTGGTCCGTGAGCGCTAC	0.572													20	38					0	0	0.016522	0	0	
CPAMD8	27151	broad.mit.edu	37	19	17088219	17088219	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr19:17088219C>T	uc002nfb.2	-	15	1890	c.1858G>A	c.(1858-1860)GAC>AAC	p.D620N		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	573						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TGAAGGCTGTCGGCGACCCCT	0.597													53	40					0	0	0.048971	0	0	
FCGBP	8857	broad.mit.edu	37	19	40419757	40419757	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr19:40419757A>C	uc002omp.3	-	6	3245	c.3237T>G	c.(3235-3237)CAT>CAG	p.H1079Q		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1079	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCAGCTTGCTATGGCACTCCC	0.642													16	111					0	0	0.049695	0	0	
PRX	57716	broad.mit.edu	37	19	40900837	40900837	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr19:40900837G>A	uc002onr.2	-	7	3691	c.3422C>T	c.(3421-3423)GCG>GTG	p.A1141V	PRX_uc002onq.2_Missense_Mutation_p.A1002V|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1141	Glu-rich (acidic).				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCTCAGCCCCGCGTCATGGCC	0.667													7	35					0	0	0.029380	0	0	
ZNF114	163071	broad.mit.edu	37	19	48789445	48789445	+	Silent	SNP	G	A	A	rs151202823	byFrequency	TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr19:48789445G>A	uc002pil.1	+	6	1061	c.564G>A	c.(562-564)CCG>CCA	p.P188P	ZNF114_uc010elv.1_Silent_p.P188P|ZNF114_uc002pim.1_Silent_p.P188P|ZNF114_uc002pin.2_Silent_p.P154P	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	188					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		AGTGGGTTCCGTGTGGGAGAA	0.438													34	31					0	0	0.030466	0	0	
ZNF761	388561	broad.mit.edu	37	19	53958879	53958879	+	Missense_Mutation	SNP	A	G	G	rs147132093		TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr19:53958879A>G	uc010eqp.2	+	7	1576	c.1118A>G	c.(1117-1119)CAT>CGT	p.H373R	ZNF761_uc010ydy.1_Missense_Mutation_p.H319R|ZNF761_uc002qbt.1_Missense_Mutation_p.H319R	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	373	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		ACATGCCATCATAGACTTCAT	0.428													4	240					0	0	0.014758	0	0	
PEG3	5178	broad.mit.edu	37	19	57328018	57328018	+	Missense_Mutation	SNP	G	A	A	rs138383423		TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr19:57328018G>A	uc002qnu.2	-	7	2143	c.1792C>T	c.(1792-1794)CGT>TGT	p.R598C	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.R569C|PEG3_uc002qnv.2_Missense_Mutation_p.R598C|PEG3_uc002qnw.2_Missense_Mutation_p.R474C|PEG3_uc002qnx.2_Missense_Mutation_p.R472C|PEG3_uc010etr.2_Missense_Mutation_p.R598C	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	598					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		tcacgttcacgttcatgttca	0.378													8	34					0	0	0.038147	0	0	
TPO	7173	broad.mit.edu	37	2	1426885	1426885	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:1426885T>C	uc002qww.2	+	3	254	c.163T>C	c.(163-165)TAC>CAC	p.Y55H	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Missense_Mutation_p.Y55H|TPO_uc002qwu.2_Missense_Mutation_p.Y55H|TPO_uc002qwr.2_Missense_Mutation_p.Y55H|TPO_uc002qwx.2_Missense_Mutation_p.Y55H|TPO_uc010yio.1_Missense_Mutation_p.Y55H|TPO_uc010yip.1_Missense_Mutation_p.Y55H	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	55	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CACCGCCATGTACGCCACGAT	0.597													21	15					0	0	0.027356	0	0	
OTOF	9381	broad.mit.edu	37	2	26697430	26697430	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:26697430C>T	uc002rhk.2	-	26	3366	c.3239G>A	c.(3238-3240)CGT>CAT	p.R1080H	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Missense_Mutation_p.R333H|OTOF_uc002rhi.2_Missense_Mutation_p.R390H|OTOF_uc002rhj.2_Missense_Mutation_p.R333H	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1080	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCGTTGCCACGGTAGATCTG	0.527													23	14					0	0	0.018920	0	0	
NRXN1	9378	broad.mit.edu	37	2	50573836	50573836	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:50573836G>A	uc010fbp.2	-	1	1059	c.252C>T	c.(250-252)GGC>GGT	p.G84G	NRXN1_uc002rxb.3_Intron|NRXN1_uc010fbq.2_Intron|NRXN1_uc002rxe.3_Intron|NRXN1_uc002rxc.1_Intron	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	84	Extracellular (Potential).				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CACCGTGTCCGCCTCGCAAGG	0.572													5	88					0	0	0.047766	0	0	
VPS54	51542	broad.mit.edu	37	2	64211037	64211037	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:64211037C>G	uc002scq.2	-	2	260	c.97G>C	c.(97-99)GTG>CTG	p.V33L	VPS54_uc002scp.2_Missense_Mutation_p.V33L	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	33					protein transport|retrograde transport, endosome to Golgi						0						AGTGATGGCACAGGTCGAATG	0.403													53	121					0	0	0.048971	0	0	
SPRED2	200734	broad.mit.edu	37	2	65571938	65571938	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:65571938C>T	uc002sdr.3	-	2	654	c.119G>A	c.(118-120)CGC>CAC	p.R40H	SPRED2_uc010fcw.2_Missense_Mutation_p.R37H|SPRED2_uc010fcx.1_RNA	NM_181784	NP_861449	Q7Z698	SPRE2_HUMAN	sprouty-related protein with EVH-1 domain 2	40	WH1.				inactivation of MAPK activity|multicellular organismal development	transport vesicle membrane	stem cell factor receptor binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GACCCCGACGCGACTGATCCC	0.532													5	48					0	0	0.014758	0	0	
DYSF	8291	broad.mit.edu	37	2	71795434	71795434	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:71795434T>C	uc002sie.2	+	26	3152	c.2776T>C	c.(2776-2778)TGG>CGG	p.W926R	DYSF_uc010feg.2_Missense_Mutation_p.W957R|DYSF_uc010feh.2_Missense_Mutation_p.W912R|DYSF_uc002sig.3_Missense_Mutation_p.W912R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.W926R|DYSF_uc010fef.2_Missense_Mutation_p.W943R|DYSF_uc010fei.2_Missense_Mutation_p.W943R|DYSF_uc010fek.2_Missense_Mutation_p.W944R|DYSF_uc010fej.2_Missense_Mutation_p.W913R|DYSF_uc010fel.2_Missense_Mutation_p.W913R|DYSF_uc010feo.2_Missense_Mutation_p.W958R|DYSF_uc010fem.2_Missense_Mutation_p.W927R|DYSF_uc010fen.2_Missense_Mutation_p.W944R|DYSF_uc002sif.2_Missense_Mutation_p.W927R	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	926	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CGGCTGGACCTGGGCTGGAGA	0.647													129	414					0	0	0.048971	0	0	
INPP4A	3631	broad.mit.edu	37	2	99204053	99204053	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:99204053C>T	uc002syy.2	+	26	3309	c.2916C>T	c.(2914-2916)TAC>TAT	p.Y972Y	INPP4A_uc010yvk.1_Silent_p.Y933Y|INPP4A_uc002syx.2_Silent_p.Y967Y|INPP4A_uc010fik.2_Silent_p.Y301Y	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	972					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						AAGGGACTTACGGAAAAGTTG	0.408													10	77					0	0	0.020292	0	0	
TANC1	85461	broad.mit.edu	37	2	160020039	160020039	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:160020039C>G	uc002uag.2	+	8	1202	c.928C>G	c.(928-930)CGG>GGG	p.R310G	TANC1_uc010fol.1_Missense_Mutation_p.R204G|TANC1_uc010zcm.1_Missense_Mutation_p.R309G|TANC1_uc010fom.1_Intron	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	310						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						AATAATGCCACGGCCCAACTC	0.547													4	55					0	0	0.014758	0	0	
TTN	7273	broad.mit.edu	37	2	179398445	179398445	+	Silent	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:179398445T>C	uc010zfg.1	-	307	95417	c.95193A>G	c.(95191-95193)AAA>AAG	p.K31731K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K25426K|TTN_uc010zfi.1_Silent_p.K25359K|TTN_uc010zfj.1_Silent_p.K25234K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32658							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTCACCTGGTTTGATTTTCT	0.393													3	46					0	0	0.004672	0	0	
TTN	7273	broad.mit.edu	37	2	179600768	179600768	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:179600768T>G	uc010zfg.1	-	47	10897	c.10673A>C	c.(10672-10674)AAG>ACG	p.K3558T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K219T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4485							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTAAGGGACTTAGGTCTGGA	0.438													50	38					0	0	0.048971	0	0	
TTN	7273	broad.mit.edu	37	2	179658255	179658255	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:179658255G>A	uc010zfg.1	-	9	1636	c.1412C>T	c.(1411-1413)GCG>GTG	p.A471V	TTN_uc010zfh.1_Missense_Mutation_p.A471V|TTN_uc010zfi.1_Missense_Mutation_p.A471V|TTN_uc010zfj.1_Missense_Mutation_p.A471V|TTN_uc002unb.2_Missense_Mutation_p.A471V|TTN_uc010frg.1_Missense_Mutation_p.A145V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	471							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTCTTCTCCGCTTCCTTTCT	0.313													13	47					0	0	0.038395	0	0	
SESTD1	91404	broad.mit.edu	37	2	180047841	180047841	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:180047841T>G	uc002uni.3	-	3	280	c.130A>C	c.(130-132)AGT>CGT	p.S44R		NM_178123	NP_835224	Q86VW0	SESD1_HUMAN	SEC14 and spectrin domains 1	44	CRAL-TRIO.				regulation of calcium ion transport via voltage-gated calcium channel activity		phosphatidic acid binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0344)|Epithelial(96;0.0531)|all cancers(119;0.147)			AAGGTGACACTCAGCTCATCC	0.358													7	75					0	0	0.047766	0	0	
MAP2	4133	broad.mit.edu	37	2	210559425	210559425	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:210559425G>A	uc002vde.1	+	7	2779	c.2531G>A	c.(2530-2532)CGT>CAT	p.R844H	MAP2_uc002vdc.1_Missense_Mutation_p.R844H|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.R840H	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	844					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	GAGGATAGTCGTACTGGCTTG	0.498													25	112					0	0	0.034045	0	0	
MAP2	4133	broad.mit.edu	37	2	210560109	210560109	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:210560109T>G	uc002vde.1	+	7	3463	c.3215T>G	c.(3214-3216)CTT>CGT	p.L1072R	MAP2_uc002vdc.1_Missense_Mutation_p.L1072R|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.L1068R	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1072					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	GAGCTAAAACTTGAGGCTACA	0.458													55	65					0	0	0.048971	0	0	
ABCA12	26154	broad.mit.edu	37	2	215802240	215802240	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:215802240G>A	uc002vew.2	-	51	7756	c.7536C>T	c.(7534-7536)TAC>TAT	p.Y2512Y	ABCA12_uc002vev.2_Silent_p.Y2194Y|ABCA12_uc010zjn.1_Silent_p.Y1439Y	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2512					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTACTTTTAAGTATGTTTTTG	0.229													29	32					0	0	0.021022	0	0	
KIF1A	547	broad.mit.edu	37	2	241683440	241683440	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr2:241683440A>T	uc002vzy.2	-	31	3346	c.3200T>A	c.(3199-3201)ATC>AAC	p.I1067N	KIF1A_uc010fzk.2_Missense_Mutation_p.I1168N|KIF1A_uc002vzz.1_Missense_Mutation_p.I1168N	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1067					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CTGGCTCTTGATGTACTCAAT	0.612													4	182					0	0	0.009096	0	0	
SLC4A11	83959	broad.mit.edu	37	20	3210393	3210393	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:3210393A>C	uc002wig.2	-	13	1615	c.1567T>G	c.(1567-1569)TTG>GTG	p.L523V	SLC4A11_uc010zqe.1_Missense_Mutation_p.L550V|SLC4A11_uc002wih.2_Intron|SLC4A11_uc010zqf.1_Missense_Mutation_p.L507V	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	523	Extracellular (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						TAGTCGTCCAAGTAATGCCCA	0.597													7	126					0	0	0.038147	0	0	
RRBP1	6238	broad.mit.edu	37	20	17601012	17601012	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:17601012G>A	uc002wpv.1	-	19	2566	c.2212C>T	c.(2212-2214)CGG>TGG	p.R738W	RRBP1_uc010zrp.1_5'Flank|RRBP1_uc002wpt.1_Missense_Mutation_p.R108W|RRBP1_uc002wpu.2_Missense_Mutation_p.R512W|RRBP1_uc002wpw.1_Missense_Mutation_p.R738W|RRBP1_uc010gcl.1_Missense_Mutation_p.R512W|RRBP1_uc010gcm.1_3'UTR	NM_001042576	NP_001036041	Q9P2E9	RRBP1_HUMAN	ribosome binding protein 1	1171	Cytoplasmic (Potential).				protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						ACTGTGACCCGGGACTACAAA	0.537													23	116					0	0	0.016522	0	0	
DNMT3B	1789	broad.mit.edu	37	20	31385049	31385049	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:31385049C>A	uc002wyc.2	+	14	1755	c.1434C>A	c.(1432-1434)TGC>TGA	p.C478*	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Nonsense_Mutation_p.C458*|DNMT3B_uc002wye.2_Nonsense_Mutation_p.C458*|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Nonsense_Mutation_p.C416*|DNMT3B_uc010zua.1_Nonsense_Mutation_p.C382*|DNMT3B_uc002wyf.2_Nonsense_Mutation_p.C470*|DNMT3B_uc002wyg.2_Nonsense_Mutation_p.C177*	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	478	PHD-type; atypical.|Interaction with the PRC2/EED-EZH2 complex (By similarity).|ADD.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						AGTCTTACTGCACTGTGTGCT	0.572													4	194					0.000602214	0.000621852	0.014758	1	0	
EIF2S2	8894	broad.mit.edu	37	20	32677677	32677677	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:32677677C>T	uc002xaf.2	-	9	1030	c.861G>A	c.(859-861)CCG>CCA	p.P287P	EIF2S2_uc002xag.2_Silent_p.P284P|EIF2S2_uc010ges.2_Silent_p.P227P	NM_003908	NP_003899	P20042	IF2B_HUMAN	eukaryotic translation initiation factor 2 beta	287	C4-type (Potential).					cytosol|eukaryotic translation initiation factor 2 complex	metal ion binding|protein binding|translation initiation factor activity			large_intestine(1)	1						GGATTGTGTCCGGTGATCGGC	0.468													36	129					0	0	0.042209	0	0	
ITCH	83737	broad.mit.edu	37	20	33068998	33068998	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:33068998G>A	uc010geu.1	+	21	2395	c.2203G>A	c.(2203-2205)GAG>AAG	p.E735K	ITCH_uc002xak.2_Missense_Mutation_p.E694K|ITCH_uc010zuj.1_Missense_Mutation_p.E584K	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	735	HECT.				apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						AGAAAATAAAGAGGAATACAT	0.348													18	97					0	0	0.014323	0	0	
DDX27	55661	broad.mit.edu	37	20	47838054	47838054	+	Silent	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:47838054T>C	uc002xuh.2	+	2	313	c.252T>C	c.(250-252)CCT>CCC	p.P84P		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	84	Asp/Glu/Lys-rich.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ATTTCAACCCTGATTTCGTTT	0.532													3	73					0	0	0.009096	0	0	
MC3R	4159	broad.mit.edu	37	20	54823941	54823941	+	Silent	SNP	G	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:54823941G>T	uc002xxb.2	+	1	154	c.42G>T	c.(40-42)CTG>CTT	p.L14L		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	51	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			AGCCAACACTGCCTAATGGCT	0.587													5	193					0.00116845	0.00120003	0.021553	1	0	
C20orf43	51507	broad.mit.edu	37	20	55059238	55059238	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:55059238G>A	uc002xxt.2	+	5	577	c.470G>A	c.(469-471)TGC>TAC	p.C157Y	C20orf43_uc010zzf.1_Missense_Mutation_p.C187Y|C20orf43_uc002xxu.2_Missense_Mutation_p.C157Y|C20orf43_uc002xxv.2_Missense_Mutation_p.C157Y	NM_016407	NP_057491	Q9BY42	CT043_HUMAN	hypothetical protein LOC51507	157										ovary(1)	1			Colorectal(105;0.202)			GCGGAAGTTTGCCACACGGTG	0.478													47	101					0	0	0.048971	0	0	
BMP7	655	broad.mit.edu	37	20	55746147	55746147	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr20:55746147C>T	uc010gip.1	-	7	1693	c.1164G>A	c.(1162-1164)CCG>CCA	p.P388P	BMP7_uc010giq.1_Silent_p.P322P	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	388					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			GCACCGTTTCCGGGTTGATGA	0.517													16	83					0	0	0.055883	0	0	
TPTE	7179	broad.mit.edu	37	21	10971337	10971337	+	Missense_Mutation	SNP	G	A	A	rs149877959	byFrequency	TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr21:10971337G>A	uc002yip.1	-	5	388	c.20C>T	c.(19-21)CCG>CTG	p.P7L	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P7L|TPTE_uc002yir.1_Missense_Mutation_p.P7L|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	7					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CAGGTCAGTCGGATCAGGACT	0.373													6	53					0	0	0.038147	0	0	
PDE9A	5152	broad.mit.edu	37	21	44179168	44179168	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr21:44179168C>G	uc002zbm.2	+	11	933	c.870C>G	c.(868-870)ATC>ATG	p.I290M	PDE9A_uc002zbn.2_Missense_Mutation_p.I163M|PDE9A_uc002zbo.2_Missense_Mutation_p.I237M|PDE9A_uc002zbp.2_Missense_Mutation_p.I83M|PDE9A_uc002zbq.2_Missense_Mutation_p.I188M|PDE9A_uc002zbs.2_Missense_Mutation_p.I83M|PDE9A_uc002zbr.2_Missense_Mutation_p.I83M|PDE9A_uc002zbt.2_Missense_Mutation_p.I162M|PDE9A_uc002zbu.2_Missense_Mutation_p.I156M|PDE9A_uc002zbv.2_Missense_Mutation_p.I130M|PDE9A_uc002zbw.2_Missense_Mutation_p.I73M|PDE9A_uc002zbx.2_Missense_Mutation_p.I230M|PDE9A_uc002zby.2_Missense_Mutation_p.I73M|PDE9A_uc002zbz.2_Missense_Mutation_p.I182M|PDE9A_uc002zca.2_Missense_Mutation_p.I249M|PDE9A_uc002zcb.2_Missense_Mutation_p.I264M|PDE9A_uc002zcc.2_Missense_Mutation_p.I189M|PDE9A_uc002zcd.2_Missense_Mutation_p.I204M|PDE9A_uc002zce.2_Missense_Mutation_p.I223M|PDE9A_uc002zcf.2_Missense_Mutation_p.I83M|PDE9A_uc002zcg.2_Missense_Mutation_p.I83M|PDE9A_uc002zch.2_Missense_Mutation_p.I73M|PDE9A_uc010gpf.1_Missense_Mutation_p.I83M	NM_002606	NP_002597	O76083	PDE9A_HUMAN	phosphodiesterase 9A isoform a	290	Catalytic (By similarity).				platelet activation|signal transduction	cytosol|endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm|ruffle membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|skin(1)	2						ACTTCAGCATCAACCCTGTCA	0.587													15	36					0	0	0.049695	0	0	
BCR	613	broad.mit.edu	37	22	23632583	23632583	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr22:23632583G>A	uc002zww.2	+	14	3361	c.2765G>A	c.(2764-2766)GGA>GAA	p.G922E	BCR_uc002zwx.2_Missense_Mutation_p.G922E|BCR_uc011aiy.1_Missense_Mutation_p.G511E|BCR_uc002zwy.1_3'UTR	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	922	C2.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						TCAGCCACTGGATTTAAGCAG	0.562			T	ABL1| FGFR1|JAK2 	CML|ALL|AML						OREG0026390	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	221					0	0	0.038147	0	0	
ISX	91464	broad.mit.edu	37	22	35481614	35481614	+	Silent	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr22:35481614T>G	uc003anj.2	+	4	1617	c.666T>G	c.(664-666)ACT>ACG	p.T222T	ISX_uc011amg.1_Silent_p.T210T	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	222						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						TCCATCAAACTTGCATCCCTG	0.557													36	105					0	0	0.033182	0	0	
SEPT3	55964	broad.mit.edu	37	22	42383244	42383244	+	Silent	SNP	C	T	T	rs77263193	byFrequency	TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr22:42383244C>T	uc003bbr.3	+	4	504	c.366C>T	c.(364-366)ACC>ACT	p.T122T	WBP2NL_uc011ape.1_Intron|SEPT3_uc003bbs.3_Silent_p.T122T|SEPT3_uc010gyr.2_Silent_p.T58T|SEPT3_uc011apj.1_Silent_p.T58T|SEPT3_uc010gys.2_Intron	NM_145733	NP_663786	Q9UH03	SEPT3_HUMAN	septin 3 isoform A	122					cell cycle|cytokinesis	cell junction|septin complex	GTP binding				0						TGAAGCTGACCGTCATCGACA	0.502													16	47					0	0	0.012319	0	0	
SCUBE1	80274	broad.mit.edu	37	22	43610151	43610151	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr22:43610151G>A	uc003bdt.1	-	16	2086	c.1998C>T	c.(1996-1998)TGC>TGT	p.C666C		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	666					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				CGCTGCTGGGGCACGGTGTGC	0.652													10	38					0	0	0.010729	0	0	
GHRL	51738	broad.mit.edu	37	3	10331490	10331490	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr3:10331490C>T	uc010hdf.2	-	3	316	c.181G>A	c.(181-183)GAT>AAT	p.D61N	GHRLOS_uc011atx.1_Intron|GHRLOS_uc011aty.1_Intron|GHRLOS_uc011atz.1_Intron|GHRLOS_uc011aua.1_Intron|GHRLOS_uc010hdl.2_Intron|GHRLOS_uc011aub.1_Intron|GHRLOS_uc010hdm.2_Intron|GHRLOS_uc011auc.1_Intron|GHRLOS_uc011aud.1_Intron|GHRLOS_uc011aue.1_Intron|GHRLOS_uc011auf.1_Intron|GHRLOS_uc011aug.1_Intron|GHRLOS_uc011auh.1_Intron|GHRLOS_uc011aui.1_Intron|GHRLOS_uc011auj.1_Intron|GHRLOS_uc010hdn.2_Intron|GHRL_uc010hda.1_RNA|GHRL_uc010hdb.1_RNA|GHRL_uc003bvj.1_Missense_Mutation_p.D61N|GHRL_uc003bvk.3_RNA|GHRL_uc010hdk.2_Missense_Mutation_p.D48N|GHRL_uc010hdc.2_Intron|GHRL_uc010hdd.2_Intron|GHRL_uc010hde.2_Missense_Mutation_p.D60N|GHRL_uc010hdi.2_Missense_Mutation_p.D61N|GHRL_uc010hdh.2_Missense_Mutation_p.D61N|GHRL_uc010hdj.2_Missense_Mutation_p.D49N|GHRLOS_uc011auk.1_Intron	NM_016362	NP_057446	Q9UBU3	GHRL_HUMAN	ghrelin/obestatin isoform 1 preproprotein	61					actin polymerization or depolymerization|activation of MAPK activity|adult feeding behavior|cartilage development|cortisol secretion|decidualization|dendrite development|elevation of cytosolic calcium ion concentration|G-protein coupled receptor protein signaling pathway|glucose metabolic process|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of angiogenesis|negative regulation of circadian sleep/wake cycle, REM sleep|negative regulation of endothelial cell proliferation|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of circadian sleep/wake cycle, non-REM sleep|positive regulation of corticotropin secretion|positive regulation of cortisol secretion|positive regulation of growth hormone secretion|positive regulation of insulin secretion|positive regulation of synaptogenesis|response to estrogen stimulus	axon|endoplasmic reticulum lumen|extracellular space|stored secretory granule	ghrelin receptor binding|growth hormone-releasing hormone activity|protein tyrosine kinase activator activity			ovary(1)	1						TGACCTCCATCTTCCGGGCGG	0.597													63	180					0	0	0.048971	0	0	
ANKRD28	23243	broad.mit.edu	37	3	15736313	15736313	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr3:15736313T>A	uc003caj.1	-	17	1747	c.1604A>T	c.(1603-1605)GAA>GTA	p.E535V	ANKRD28_uc003cai.1_Missense_Mutation_p.E381V|ANKRD28_uc011avz.1_Missense_Mutation_p.E381V|ANKRD28_uc003cak.1_RNA|ANKRD28_uc011awa.1_RNA|ANKRD28_uc003cal.1_Missense_Mutation_p.E565V|ANKRD28_uc003cam.2_Missense_Mutation_p.E568V	NM_015199	NP_056014	O15084	ANR28_HUMAN	ankyrin repeat domain 28	535						nucleoplasm	protein binding			breast(1)	1						TCCTGAGGTTTCCATTAACTG	0.408													39	27					0	0	0.048971	0	0	
ZNF662	389114	broad.mit.edu	37	3	42956441	42956441	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr3:42956441G>A	uc003cmi.2	+	5	1228	c.876G>A	c.(874-876)ACG>ACA	p.T292T	ZNF662_uc003cmk.2_Silent_p.T318T|ZNF662_uc003cmj.2_Silent_p.T184T	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	292	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		CAAGCCTTACGCAACATCAAC	0.453													16	47					0	0	0.038395	0	0	
FAM19A4	151647	broad.mit.edu	37	3	68802041	68802041	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr3:68802041T>G	uc003dnh.1	-	4	702	c.259A>C	c.(259-261)ACT>CCT	p.T87P	FAM19A4_uc003dni.1_Missense_Mutation_p.T87P	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	87						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		TGAGCCCGAGTTGTGCCCGCC	0.522													17	66					0	0	0.043863	0	0	
ADCY5	111	broad.mit.edu	37	3	123166565	123166565	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr3:123166565G>A	uc003egh.1	-	1	828	c.828C>T	c.(826-828)GCC>GCT	p.A276A		NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	276	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CGCCGACGGCGGCCGCCAGCA	0.692													5	16					0	0	0.014758	0	0	
SMC4	10051	broad.mit.edu	37	3	160137276	160137276	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr3:160137276A>G	uc003fdh.2	+	12	1915	c.1802A>G	c.(1801-1803)GAT>GGT	p.D601G	IFT80_uc003fda.2_Intron|SMC4_uc010hwc.1_Missense_Mutation_p.D365G|SMC4_uc003fdi.2_Missense_Mutation_p.D576G|SMC4_uc003fdj.2_Missense_Mutation_p.D601G|SMC4_uc010hwd.2_Missense_Mutation_p.D601G|SMC4_uc003fdl.2_Missense_Mutation_p.D304G	NM_001002800	NP_001002800	Q9NTJ3	SMC4_HUMAN	SMC4 structural maintenance of chromosomes	601	Flexible hinge.				cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	ATP binding|protein heterodimerization activity			ovary(1)|breast(1)	2			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			AAAGTCCTTGATGCAATAATT	0.338													22	57					0	0	0.030593	0	0	
GP5	2814	broad.mit.edu	37	3	194118890	194118890	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr3:194118890G>A	uc003ftv.1	-	2	153	c.122C>T	c.(121-123)GCG>GTG	p.A41V		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	41	LRRNT.|Extracellular (Potential).				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		GGAGATGCGCGCCACGTCGCC	0.701													8	35					0	0	0.047766	0	0	
CRIPAK	285464	broad.mit.edu	37	4	1388597	1388597	+	Missense_Mutation	SNP	G	A	A	rs75969203		TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:1388597G>A	uc003gdf.2	+	1	3258	c.298G>A	c.(298-300)GTG>ATG	p.V100M		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	100					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			GCTCACACACGTGCCCATGTG	0.647													66	84					0	0	0.048971	0	0	
D4S234E	27065	broad.mit.edu	37	4	4419002	4419002	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:4419002C>T	uc011bvz.1	+	8	1679	c.398C>T	c.(397-399)GCG>GTG	p.A133V	D4S234E_uc011bwa.1_Missense_Mutation_p.A94V|D4S234E_uc003ghz.2_Missense_Mutation_p.A133V|D4S234E_uc003gia.2_Missense_Mutation_p.A133V|D4S234E_uc003gib.2_Missense_Mutation_p.A133V	NM_014392	NP_055207	P42857	NSG1_HUMAN	brain neuron cytoplasmic protein 1	133	Lumenal (Potential).				dopamine receptor signaling pathway	Golgi membrane|integral to membrane|nucleus	dopamine receptor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.166)		AGCTACTACGCGGAGCAAGAC	0.562													28	63					0	0	0.050027	0	0	
EVC2	132884	broad.mit.edu	37	4	5624326	5624326	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:5624326G>A	uc003gij.2	-	14	2493	c.2439C>T	c.(2437-2439)GAC>GAT	p.D813D	EVC2_uc011bwb.1_Silent_p.D253D|EVC2_uc003gik.2_Silent_p.D733D	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	813						integral to membrane				large_intestine(3)|ovary(2)	5						CCTCAGGAGCGTCATCCTTCA	0.592													6	33					0	0	0.038147	0	0	
KCTD8	386617	broad.mit.edu	37	4	44449752	44449752	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:44449752C>G	uc003gwu.2	-	1	1073	c.789G>C	c.(787-789)GAG>GAC	p.E263D		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	263						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						ACGTGTACTTCTCCGGCTGCC	0.652										HNSCC(17;0.042)			3	37					0	0	0.004672	0	0	
EXOC1	55763	broad.mit.edu	37	4	56765938	56765938	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:56765938G>A	uc003hbe.1	+	17	2383	c.2225G>A	c.(2224-2226)CGA>CAA	p.R742Q	EXOC1_uc003hbf.1_Missense_Mutation_p.R742Q|EXOC1_uc003hbg.1_Missense_Mutation_p.R727Q	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	742					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					ACTCTTTCTCGATTGAAAATC	0.368													11	53					0	0	0.010729	0	0	
GNRHR	2798	broad.mit.edu	37	4	68619666	68619666	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:68619666A>G	uc003hdn.2	-	1	2139	c.388T>C	c.(388-390)TTC>CTC	p.F130L	LOC550112_uc003hdl.3_Intron|GNRHR_uc003hdm.2_Missense_Mutation_p.F130L	NM_000406	NP_000397	P30968	GNRHR_HUMAN	gonadotropin-releasing hormone receptor isoform	130	Helical; Name=3; (Potential).				multicellular organismal development	integral to plasma membrane	gonadotropin-releasing hormone receptor activity			ovary(1)	1					Abarelix(DB00106)|Cetrorelix(DB00050)|Danazol(DB01406)|Gonadorelin(DB00644)|Leuprolide(DB00007)|Nafarelin(DB00666)	ACCATCATGAAGGCTGGGGCA	0.507													65	20					0	0	0.048971	0	0	
CTSO	1519	broad.mit.edu	37	4	156863522	156863522	+	Silent	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:156863522T>G	uc003ipg.2	-	3	380	c.331A>C	c.(331-333)AGA>CGA	p.R111R		NM_001334	NP_001325	P43234	CATO_HUMAN	cathepsin O preproprotein	111					proteolysis	lysosome	cysteine-type endopeptidase activity				0	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.05)|Kidney(143;0.0627)|COAD - Colon adenocarcinoma(41;0.148)		CAGTCAAATCTTAACGGCAAA	0.413													64	61					0	0	0.048971	0	0	
TLL1	7092	broad.mit.edu	37	4	166929130	166929130	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:166929130G>A	uc003irh.1	+	7	1494	c.847G>A	c.(847-849)GAA>AAA	p.E283K	TLL1_uc011cjn.1_Missense_Mutation_p.E283K|TLL1_uc011cjo.1_Missense_Mutation_p.E107K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	283	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GGAGCCTGGAGAAGTAAACTC	0.408													78	35					0	0	0.048971	0	0	
DDX60L	91351	broad.mit.edu	37	4	169362498	169362498	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr4:169362498C>T	uc003irq.3	-	10	1505	c.1284G>A	c.(1282-1284)TCG>TCA	p.S428S	DDX60L_uc003irr.1_Silent_p.S428S|DDX60L_uc003irs.1_Silent_p.S155S	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	428							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CTTGAATGACCGATTTCTCTT	0.353													6	76					0	0	0.029380	0	0	
DNAH5	1767	broad.mit.edu	37	5	13771038	13771038	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr5:13771038T>G	uc003jfd.2	-	56	9467	c.9425A>C	c.(9424-9426)AAG>ACG	p.K3142T	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3142	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CACCTCCTTCTTGATTTCCAA	0.453									Kartagener_syndrome				8	54					0	0	0.008291	0	0	
PRDM9	56979	broad.mit.edu	37	5	23510114	23510114	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr5:23510114A>C	uc003jgo.2	+	4	461	c.279A>C	c.(277-279)GAA>GAC	p.E93D		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	93					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ATTCTGATGAAGAATGGACCC	0.363										HNSCC(3;0.000094)			4	33					0	0	0.014758	0	0	
RICTOR	253260	broad.mit.edu	37	5	38950621	38950621	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr5:38950621C>T	uc003jlp.2	-	31	3353	c.3329G>A	c.(3328-3330)CGT>CAT	p.R1110H	RICTOR_uc003jlo.2_Missense_Mutation_p.R1110H|RICTOR_uc010ivf.2_Missense_Mutation_p.R825H	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	1110					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					ACTGCTACTACGATGTTTTTT	0.368													10	139					0	0	0.008291	0	0	
MAP1B	4131	broad.mit.edu	37	5	71495412	71495412	+	Missense_Mutation	SNP	G	A	A	rs34160030	byFrequency	TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr5:71495412G>A	uc003kbw.3	+	5	6471	c.6230G>A	c.(6229-6231)CGT>CAT	p.R2077H	MAP1B_uc010iyw.1_Missense_Mutation_p.R2094H|MAP1B_uc010iyx.1_Missense_Mutation_p.R1951H|MAP1B_uc010iyy.1_Missense_Mutation_p.R1951H	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2077						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		TCAGAAGCCCGTCAGGATGTC	0.473													4	113					0	0	0.014758	0	0	
SIL1	64374	broad.mit.edu	37	5	138456726	138456726	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr5:138456726G>A	uc003ldm.2	-	2	259	c.242C>T	c.(241-243)CCA>CTA	p.P81L	SIL1_uc003ldn.2_Missense_Mutation_p.P80L|SIL1_uc003ldo.2_Missense_Mutation_p.P81L|SIL1_uc003ldp.2_Missense_Mutation_p.P81L	NM_022464	NP_071909	Q9H173	SIL1_HUMAN	SIL1 protein precursor	81	Interaction with HSPA5 and localization to the endoplasmic reticulum (By similarity).				intracellular protein transport|protein folding|transmembrane transport	endoplasmic reticulum lumen	unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CCTGATACCTGGCTGAAGGGC	0.542									Marinesco-Sj_gren_syndrome				11	48					0	0	0.013537	0	0	
PCDHB13	56123	broad.mit.edu	37	5	140594778	140594778	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr5:140594778G>A	uc003lja.1	+	1	1270	c.1083G>A	c.(1081-1083)GCG>GCA	p.A361A		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	361	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGAGAACGCGCCTGAAACTG	0.448													36	157					0	0	0.036044	0	0	
GABRP	2568	broad.mit.edu	37	5	170239126	170239126	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr5:170239126G>A	uc003mau.2	+	10	1385	c.1187G>A	c.(1186-1188)CGA>CAA	p.R396Q	GABRP_uc011dev.1_3'UTR	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	396	Cytoplasmic (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTTGTCTTCCGAGAAAAGATG	0.393													6	49					0	0	0.029380	0	0	
GPX6	257202	broad.mit.edu	37	6	28472219	28472219	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:28472219C>T	uc011dlj.1	-	6	566	c.516G>A	c.(514-516)GAG>GAA	p.E172E	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	172					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	CCTTCATGGGCTCCCAGAAGA	0.493													6	52					0	0	0.029380	0	0	
SCAND3	114821	broad.mit.edu	37	6	28539970	28539970	+	Silent	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:28539970G>C	uc003nlo.2	-	4	4314	c.3696C>G	c.(3694-3696)ACC>ACG	p.T1232T		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1232					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						atccttcgtcggtagccagct	0													13	35					0	0	0.020292	0	0	
SCAND3	114821	broad.mit.edu	37	6	28540574	28540574	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:28540574G>C	uc003nlo.2	-	4	3710	c.3092C>G	c.(3091-3093)TCT>TGT	p.S1031C		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1031					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						caatgaattagattttatata	0													11	33					0	0	0.008291	0	0	
OR5V1	81696	broad.mit.edu	37	6	29323795	29323795	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:29323795A>G	uc011dlo.1	-	1	260	c.178T>C	c.(178-180)TAT>CAT	p.Y60H		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						AGAAAATAATACATAGGTGTA	0.398													36	132					0	0	0.042209	0	0	
PACSIN1	29993	broad.mit.edu	37	6	34499470	34499470	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:34499470C>T	uc003ojo.2	+	9	1337	c.1131C>T	c.(1129-1131)GGC>GGT	p.G377G	PACSIN1_uc003ojp.2_Silent_p.G377G	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	377					endocytosis		protein kinase activity				0						CCAACGGGGGCGCCAACCCCT	0.627													81	102					0	0	0.048971	0	0	
USP49	25862	broad.mit.edu	37	6	41773985	41773985	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:41773985G>A	uc003ori.2	-	4	959	c.737C>T	c.(736-738)CCG>CTG	p.P246L		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	246					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GGCCATGGCCGGCTGGCGACG	0.512													5	46					0	0	0.029380	0	0	
AARS2	57505	broad.mit.edu	37	6	44268376	44268376	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:44268376C>T	uc010jza.1	-	22	2869	c.2866G>A	c.(2866-2868)GGC>AGC	p.G956S	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron|TCTE1_uc003oxi.2_5'Flank	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	956					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	ACTCGTGAGCCCCACGCCTTG	0.617													19	72					0	0	0.038395	0	0	
SYNCRIP	10492	broad.mit.edu	37	6	86346762	86346762	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:86346762G>A	uc003pla.2	-	6	1130	c.589C>T	c.(589-591)CCA>TCA	p.P197S	SYNCRIP_uc003pku.2_Missense_Mutation_p.P197S|SYNCRIP_uc003pkw.2_Missense_Mutation_p.P197S|SYNCRIP_uc003pky.2_Missense_Mutation_p.P99S|SYNCRIP_uc003pkv.2_Missense_Mutation_p.P197S|SYNCRIP_uc003pkx.2_Missense_Mutation_p.P45S|SYNCRIP_uc003pkz.2_Missense_Mutation_p.P197S	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	197	RRM 1.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		CCAGTGAGTGGATCCATCATT	0.403													20	84					0	0	0.014323	0	0	
POU3F2	5454	broad.mit.edu	37	6	99284012	99284012	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:99284012C>T	uc003ppe.2	+	1	1433	c.1263C>T	c.(1261-1263)GGC>GGT	p.G421G		NM_005604	NP_005595	P20265	PO3F2_HUMAN	POU domain, class 3, transcription factor 2	421					positive regulation of cell proliferation		identical protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0355)		CTCTGCCGGGCGCCGAGGATG	0.627													6	87					0	0	0.029380	0	0	
LAMA2	3908	broad.mit.edu	37	6	129634198	129634198	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:129634198A>T	uc003qbn.2	+	23	3472	c.3367A>T	c.(3367-3369)AAA>TAA	p.K1123*	LAMA2_uc003qbo.2_Nonsense_Mutation_p.K1123*	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1123	Laminin EGF-like 13.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TTCAGAGACTAAAAAATGCTC	0.493													11	86					0	0	0.013537	0	0	
IL20RA	53832	broad.mit.edu	37	6	137329826	137329826	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:137329826T>C	uc003qhj.2	-	5	1067	c.634A>G	c.(634-636)ACT>GCT	p.T212A	IL20RA_uc011edl.1_Missense_Mutation_p.T163A|IL20RA_uc003qhk.2_Missense_Mutation_p.T101A|IL20RA_uc003qhi.2_5'UTR	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	212	Extracellular (Potential).|Fibronectin type-III 2.					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		CAGTAAAGAGTGTTCGGCTCC	0.547													8	226					0	0	0.038147	0	0	
RAET1E	135250	broad.mit.edu	37	6	150210686	150210686	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr6:150210686G>A	uc003qnl.1	-	3	480	c.420C>T	c.(418-420)TTC>TTT	p.F140F	uc003qni.1_Intron|RAET1E_uc003qnj.2_Silent_p.F140F|RAET1E_uc003qnk.1_Silent_p.F104F|RAET1E_uc010kih.1_RNA	NM_139165	NP_631904	Q8TD07	N2DL4_HUMAN	retinoic acid early transcript 1E precursor	140	Extracellular (Potential).|MHC class I alpha-2 like.				antigen processing and presentation|immune response|regulation of immune response	integral to membrane|MHC class I protein complex	protein binding				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		CATTGGTGGCGAACTGCCAGG	0.468													148	62					0	0	0.048971	0	0	
SDK1	221935	broad.mit.edu	37	7	4249744	4249744	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr7:4249744G>A	uc003smx.2	+	38	5628	c.5489G>A	c.(5488-5490)GGC>GAC	p.G1830D	SDK1_uc010kso.2_Missense_Mutation_p.G1086D|SDK1_uc003smy.2_Missense_Mutation_p.G317D	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1830	Fibronectin type-III 12.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GCGGCCAACGGCATCCTGCAG	0.652													10	50					0	0	0.010729	0	0	
DGKB	1607	broad.mit.edu	37	7	14378185	14378185	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr7:14378185T>C	uc003ssz.2	-	22	2267	c.2080A>G	c.(2080-2082)AGG>GGG	p.R694G	DGKB_uc011jxt.1_Missense_Mutation_p.R675G|DGKB_uc003sta.2_Missense_Mutation_p.R694G|DGKB_uc011jxu.1_Missense_Mutation_p.R693G	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	694					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	ACGGTGGTCCTTTTGTCAGAC	0.393													3	119					0	0	0.009096	0	0	
BBS9	27241	broad.mit.edu	37	7	33397540	33397540	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr7:33397540A>T	uc003tdn.1	+	16	2139	c.1626A>T	c.(1624-1626)AAA>AAT	p.K542N	BBS9_uc003tdo.1_Missense_Mutation_p.K507N|BBS9_uc003tdp.1_Missense_Mutation_p.K537N|BBS9_uc003tdq.1_Missense_Mutation_p.K502N|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_Missense_Mutation_p.K66N|BBS9_uc003tds.1_5'UTR|BBS9_uc011kao.1_Missense_Mutation_p.K420N	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	542					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			AGCCTTCAAAAACTGCAAGCC	0.383									Bardet-Biedl_syndrome				18	102					0	0	0.018920	0	0	
ABCA13	154664	broad.mit.edu	37	7	48314870	48314870	+	Silent	SNP	A	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr7:48314870A>G	uc003toq.2	+	17	5632	c.5607A>G	c.(5605-5607)GAA>GAG	p.E1869E	ABCA13_uc010kyr.2_Silent_p.E1372E	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1869					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CCCAAGGTGAAGATTCACCAT	0.428													3	53					0	0	0.009096	0	0	
EGFR	1956	broad.mit.edu	37	7	55209992	55209992	+	Silent	SNP	G	A	A	rs148679319		TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr7:55209992G>A	uc003tqk.2	+	2	348	c.102G>A	c.(100-102)ACG>ACA	p.T34T	EGFR_uc003tqh.2_Silent_p.T34T|EGFR_uc003tqi.2_Silent_p.T34T|EGFR_uc003tqj.2_Silent_p.T34T|EGFR_uc010kzg.1_Silent_p.T34T|EGFR_uc011kco.1_5'UTR	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	34	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GCCAAGGCACGAGTAACAAGC	0.398		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			7	934					0	0	0.029380	0	0	
MAGI2	9863	broad.mit.edu	37	7	77973216	77973216	+	Silent	SNP	T	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr7:77973216T>A	uc003ugx.2	-	9	1541	c.1287A>T	c.(1285-1287)CTA>CTT	p.L429L	MAGI2_uc003ugy.2_Silent_p.L429L|MAGI2_uc010ldx.1_Silent_p.L38L|MAGI2_uc010ldy.1_Silent_p.L38L|MAGI2_uc011kgr.1_Silent_p.L261L|MAGI2_uc011kgs.1_Silent_p.L266L	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	429	PDZ 2.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGCTCTTTTTTAGGGTGGTGC	0.463													12	35					0	0	0.024245	0	0	
DOCK4	9732	broad.mit.edu	37	7	111509683	111509683	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr7:111509683C>T	uc003vfx.2	-	21	2325	c.2056G>A	c.(2056-2058)GTG>ATG	p.V686M	DOCK4_uc003vfw.2_Missense_Mutation_p.V127M|DOCK4_uc003vfy.2_Missense_Mutation_p.V686M|DOCK4_uc003vga.1_Missense_Mutation_p.V291M	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	686					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				ATCCGGTCCACGTACCATTTG	0.418													26	18					0	0	0.015359	0	0	
SGCZ	137868	broad.mit.edu	37	8	13959935	13959935	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr8:13959935A>C	uc003wwq.2	-	7	1354	c.694T>G	c.(694-696)TTC>GTC	p.F232V	SGCZ_uc010lss.2_Missense_Mutation_p.F185V	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	219	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		GTGGCCTTGAAGTCTCCTGCA	0.512													9	36					0	0	0.047766	0	0	
SGCZ	137868	broad.mit.edu	37	8	13965704	13965704	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr8:13965704C>T	uc003wwq.2	-	6	1248	c.588G>A	c.(586-588)CCG>CCA	p.P196P	SGCZ_uc010lss.2_Silent_p.P149P	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	183	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CTCTGATGTGCGGCGTCTCCA	0.463													8	37					0	0	0.013537	0	0	
EIF4EBP1	1978	broad.mit.edu	37	8	37914619	37914619	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr8:37914619C>T	uc003xks.2	+	2	238	c.166C>T	c.(166-168)CGG>TGG	p.R56W		NM_004095	NP_004086	Q13541	4EBP1_HUMAN	eukaryotic translation initiation factor 4E	56					G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|positive regulation of mitotic cell cycle|TOR signaling cascade|translation	cytosol					0	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)				CATCTATGACCGGAAATTCCT	0.552													24	59					0	0	0.041601	0	0	
AP3M2	10947	broad.mit.edu	37	8	42019858	42019858	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr8:42019858C>T	uc003xop.2	+	5	796	c.505C>T	c.(505-507)CGG>TGG	p.R169W	AP3M2_uc003xoo.2_Missense_Mutation_p.R169W|AP3M2_uc010lxe.2_RNA|AP3M2_uc003xoq.1_Missense_Mutation_p.R54W|AP3M2_uc003xor.1_Missense_Mutation_p.R169W	NM_001134296	NP_001127768	P53677	AP3M2_HUMAN	adaptor-related protein complex 3, mu 2 subunit	169					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus					0	all_cancers(6;8.14e-25)|all_epithelial(6;2.41e-27)|all_lung(13;5.09e-13)|Lung NSC(13;8.38e-12)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|Colorectal(10;0.00165)|OV - Ovarian serous cystadenocarcinoma(14;0.00346)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)			GCCTTGGCGACGGACTGGGGT	0.418													73	177					0	0	0.048971	0	0	
PXDNL	137902	broad.mit.edu	37	8	52321502	52321502	+	Silent	SNP	G	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr8:52321502G>A	uc003xqu.3	-	17	2783	c.2682C>T	c.(2680-2682)ATC>ATT	p.I894I	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	894					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TGGAGCCATCGATGTAGGCTG	0.622													6	34					0	0	0.006214	0	0	
ASAP1	50807	broad.mit.edu	37	8	131073067	131073067	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr8:131073067G>C	uc003yta.1	-	27	2978	c.2950C>G	c.(2950-2952)CCA>GCA	p.P984A	ASAP1_uc003ysz.1_Missense_Mutation_p.P795A|ASAP1_uc011liw.1_Missense_Mutation_p.P977A	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	984	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						TTCATCTGTGGTTTGGGAGGT	0.572													33	122					0	0	0.015359	0	0	
RPL8	6132	broad.mit.edu	37	8	146015800	146015800	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr8:146015800C>T	uc003zeb.2	-	5	666	c.555G>A	c.(553-555)GCG>GCA	p.A185A	RPL8_uc003zdz.2_RNA|RPL8_uc003zea.2_Silent_p.A149A|RPL8_uc003zec.2_Silent_p.A185A	NM_033301	NP_150644	P62917	RL8_HUMAN	ribosomal protein L8	185					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	rRNA binding|structural constituent of ribosome				0	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;5.47e-39)|OV - Ovarian serous cystadenocarcinoma(54;6.38e-39)|all cancers(56;5.47e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.191)		ATTTGTGGTACGCCCGGCCAG	0.542													9	113					0	0	0.010729	0	0	
GLDC	2731	broad.mit.edu	37	9	6610288	6610288	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr9:6610288T>C	uc003zkc.2	-	4	732	c.539A>G	c.(538-540)CAG>CGG	p.Q180R		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	180					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CACCATGGTCTGGTAGTTGAG	0.547													9	15					0	0	0.010729	0	0	
GRIN3A	116443	broad.mit.edu	37	9	104449347	104449347	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr9:104449347A>C	uc004bbp.1	-	2	1436	c.835T>G	c.(835-837)TTC>GTC	p.F279V	GRIN3A_uc004bbq.1_Missense_Mutation_p.F279V	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	279	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	AGGAGGAGGAAGTCGGTGATG	0.468													12	126					0	0	0.016723	0	0	
FKBP15	23307	broad.mit.edu	37	9	115955819	115955819	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr9:115955819G>C	uc004bgs.2	-	11	1136	c.1018C>G	c.(1018-1020)CTT>GTT	p.L340V	FKBP15_uc010muu.1_Missense_Mutation_p.L404V|FKBP15_uc011lxd.1_Missense_Mutation_p.L272V|FKBP15_uc010mut.1_Missense_Mutation_p.L208V|FKBP15_uc004bgt.2_Missense_Mutation_p.L340V	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	340					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						TTGGTACGAAGAGCTGGCTCC	0.274													7	5					0	0	0.038147	0	0	
NUP188	23511	broad.mit.edu	37	9	131749930	131749930	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr9:131749930C>G	uc004bws.1	+	23	2349	c.2327C>G	c.(2326-2328)ACA>AGA	p.T776R	NUP188_uc004bwu.2_Missense_Mutation_p.T119R	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	776					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						GCAGGACAGACAGTTATCAAT	0.527													30	38					0	0	0.015359	0	0	
MSL3	10943	broad.mit.edu	37	X	11786716	11786716	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chrX:11786716C>T	uc004cuw.2	+	10	1301	c.1196C>T	c.(1195-1197)TCT>TTT	p.S399F	MSL3_uc004cux.2_Missense_Mutation_p.S340F|MSL3_uc011mig.1_Missense_Mutation_p.S250F|MSL3_uc011mih.1_Missense_Mutation_p.S387F|MSL3_uc004cuy.2_Missense_Mutation_p.S233F	NM_078629	NP_523353	Q8N5Y2	MS3L1_HUMAN	male-specific lethal 3-like 1 isoform a	399					histone H4-K16 acetylation|multicellular organismal development|transcription from RNA polymerase II promoter	MSL complex	DNA binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGCAGATCATCTTCACCTATT	0.398													20	34					0	0	0.012319	0	0	
KDM6A	7403	broad.mit.edu	37	X	44922785	44922785	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chrX:44922785G>C	uc004dge.3	+	16	2021	c.1646G>C	c.(1645-1647)AGA>ACA	p.R549T	KDM6A_uc010nhk.2_Missense_Mutation_p.R515T|KDM6A_uc011mkz.1_Missense_Mutation_p.R601T|KDM6A_uc011mla.1_Missense_Mutation_p.R504T|KDM6A_uc011mlb.1_Missense_Mutation_p.R556T|KDM6A_uc011mlc.1_Missense_Mutation_p.R253T|KDM6A_uc011mld.1_Missense_Mutation_p.R188T	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	549					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						GCTCTGACCAGAGTGCCTAGC	0.567			D|N|F|S		renal|oesophageal SCC|MM								4	31					0	0	0.009096	0	0	
STARD8	9754	broad.mit.edu	37	X	67941951	67941951	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chrX:67941951C>T	uc004dxa.2	+	10	2654	c.2282C>T	c.(2281-2283)GCA>GTA	p.A761V	STARD8_uc004dxb.2_Missense_Mutation_p.A841V|STARD8_uc004dxc.3_Missense_Mutation_p.A761V	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	761	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						GACAACATGGCAGCCACCCAG	0.572													6	16					0	0	0.038147	0	0	
PJA1	64219	broad.mit.edu	37	X	68382337	68382338	+	Nonsense_Mutation	DNP	TT	AA	AA			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chrX:68382337_68382338TT>AA	uc004dxh.2	-	2	1030_1031	c.744_745AA>TT	c.(742-747)TCAAAG>TCTTAG	p.K249*	PJA1_uc011mpi.1_5'UTR|PJA1_uc004dxg.2_Intron|PJA1_uc004dxi.2_Nonsense_Mutation_p.K194*	NM_145119	NP_660095	Q8NG27	PJA1_HUMAN	praja 1 isoform a	249							zinc ion binding				0						TCTGCACTCTTTGAGGTGTTTT	0.48													18	14					0	0	0.004672	0	0	
CPXCR1	53336	broad.mit.edu	37	X	88009038	88009038	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chrX:88009038T>A	uc004efd.3	+	3	882	c.623T>A	c.(622-624)CTC>CAC	p.L208H	CPXCR1_uc004efc.3_Missense_Mutation_p.L208H	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	208						intracellular	zinc ion binding			ovary(3)	3						TACCGTCCCCTCACTGAGAGA	0.428													4	10					0	0	0.014758	0	0	
GPR101	83550	broad.mit.edu	37	X	136113611	136113611	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chrX:136113611C>T	uc011mwh.1	-	1	223	c.223G>A	c.(223-225)GTC>ATC	p.V75I		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	75	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					AGGTCGGTGACGAGGAGGTTA	0.617													14	16					0	0	0.024245	0	0	
BGN	633	broad.mit.edu	37	X	152773819	152773819	+	Silent	SNP	C	T	T			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chrX:152773819C>T	uc004fhr.1	+	8	1195	c.1023C>T	c.(1021-1023)CCC>CCT	p.P341P	BGN_uc004fhq.1_RNA	NM_001711	NP_001702	P21810	PGS1_HUMAN	biglycan preproprotein	341	LRR 11.					proteinaceous extracellular matrix|transport vesicle	extracellular matrix structural constituent			breast(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TCAACAACCCCGTGCCCTACT	0.582													32	33					0	0	0.019004	0	0	
CCDC27	148870	broad.mit.edu	37	1	3680286	3680288	+	In_Frame_Del	DEL	ACA	-	-			TCGA-BR-7717-01A-11D-2053-08	TCGA-BR-7717-11A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	67d6a830-41d5-46d2-9503-58ec158c29a7	2c0e3e8e-e528-4796-b350-c68da301b6d9	g.chr1:3680286_3680288delACA	uc001akv.2	+	8	1419_1421	c.1338_1340delACA	c.(1336-1341)TTACAA>TTA	p.Q449del		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	449										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		TTGCGTCTTTACAACAACAAGTG	0.581													67	74	---	---	---	---						.
