Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
DVL1	1855	broad.mit.edu	37	1	1275518	1275518	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:1275518C>A	uc001aer.3	-	8	856	c.809G>T	c.(808-810)AGC>ATC	p.S270I	DVL1_uc002quu.2_5'UTR|DVL1_uc009vka.2_5'UTR|DVL1_uc001aeu.1_5'UTR	NM_004421	NP_004412	O14640	DVL1_HUMAN	dishevelled 1	270	PDZ.				canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		ACGGTCGTTGCTCTGCCCCAC	0.657000													15	35					3.32936e-07	3.4404e-07	1	1	0	
MXRA8	54587	broad.mit.edu	37	1	1290695	1290695	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:1290695G>A	uc001aew.2	-	4	438	c.407C>T	c.(406-408)ACC>ATC	p.T136I	MXRA8_uc001aex.3_Missense_Mutation_p.T136I|MXRA8_uc001aey.3_Missense_Mutation_p.T136I|MXRA8_uc010nyl.1_Missense_Mutation_p.T136I|MXRA8_uc001aez.2_Missense_Mutation_p.T35I|MXRA8_uc001afa.2_Missense_Mutation_p.T127I	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor	136	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CAGGTTGCAGGTGTACAGCCC	0.517000													3	11					0	0	1	0	0	
ATAD3A	55210	broad.mit.edu	37	1	1464645	1464645	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:1464645G>A	uc001afz.1	+	15	1786	c.1692G>A	c.(1690-1692)TCG>TCA	p.S564S	ATAD3A_uc001aga.1_Silent_p.S516S|ATAD3A_uc001agb.1_Silent_p.S437S|ATAD3A_uc001agc.1_5'Flank	NM_018188	NP_060658	Q9NVI7	ATD3A_HUMAN	ATPase family, AAA domain containing 3A	564							ATP binding|nucleoside-triphosphatase activity|protein binding			skin(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.12e-36)|OV - Ovarian serous cystadenocarcinoma(86;2.18e-22)|Colorectal(212;0.000164)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00233)|BRCA - Breast invasive adenocarcinoma(365;0.00469)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0347)|Lung(427;0.147)		GGAAGTGCTCGGAGGTCGCTC	0.677000													4	6					0	0	1	0	0	
KIAA0562	9731	broad.mit.edu	37	1	3768978	3768978	+	Translation_Start_Site	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:3768978C>T	uc001aky.2	-	2	353	c.-6G>A	c.(-8--4)ACGTG>ACATG		KIAA0562_uc010nzm.1_RNA|KIAA0562_uc001akz.2_Translation_Start_Site	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,							centriole	binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		GCATTCTGCACGTTTGGGCTG	0.463000													10	24					0	0	1	0	0	
C1orf174	339448	broad.mit.edu	37	1	3809468	3809468	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:3809468C>T	uc001alf.2	-	2	215	c.108G>A	c.(106-108)ACG>ACA	p.T36T	C1orf174_uc009vls.2_RNA	NM_207356	NP_997239	Q8IYL3	CA174_HUMAN	hypothetical protein LOC339448	36											0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_cancers(23;5.09e-25)|all_epithelial(116;9.35e-17)|all_lung(118;1.09e-06)|Lung NSC(185;0.000139)|all_neural(13;0.00287)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0219)|all_hematologic(16;0.027)|Colorectal(325;0.0276)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.0743)|Ovarian(437;0.127)		Epithelial(90;1.55e-39)|OV - Ovarian serous cystadenocarcinoma(86;5.99e-23)|GBM - Glioblastoma multiforme(42;2.22e-17)|Colorectal(212;1.08e-05)|COAD - Colon adenocarcinoma(227;5.49e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000365)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.19)		TCTTGGCAGACGTGGAACCAG	0.542000													9	12					0	0	1	0	0	
AJAP1	55966	broad.mit.edu	37	1	4832466	4832466	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:4832466G>T	uc001alm.1	+	4	1425	c.1044G>T	c.(1042-1044)ACG>ACT	p.T348T	AJAP1_uc001aln.2_Silent_p.T348T	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	348	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		ACATATTCACGGCCTATAACG	0.612000													8	33					1.06961e-07	1.10658e-07	1	1	0	
ESPN	83715	broad.mit.edu	37	1	6512002	6512002	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:6512002C>A	uc001amy.2	+	10	2339	c.2171C>A	c.(2170-2172)CCG>CAG	p.P724Q	ESPN_uc001amz.2_Missense_Mutation_p.P158Q	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	724	Pro-rich.				sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		GTTCCCGTGCCGCCCACTACT	0.677000													6	16					0.00116845	0.00118048	1	1	0	
UBE4B	10277	broad.mit.edu	37	1	10166513	10166513	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:10166513C>T	uc001aqs.3	+	7	1781	c.1068C>T	c.(1066-1068)CTC>CTT	p.L356L	UBE4B_uc001aqr.3_Intron|UBE4B_uc010oai.1_Intron|UBE4B_uc010oaj.1_Intron	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	356					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		CCCCTGCCCTCGCCAGTAGCC	0.672000													24	62					0	0	1	0	0	
CASZ1	54897	broad.mit.edu	37	1	10714551	10714551	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:10714551C>T	uc001aro.2	-	10	2083	c.1763G>A	c.(1762-1764)CGC>CAC	p.R588H	CASZ1_uc001arp.1_Missense_Mutation_p.R588H|CASZ1_uc009vmx.2_Missense_Mutation_p.R612H	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	588					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GGCTCGGAAGCGCTGGAAGCC	0.582000													30	51					0	0	1	0	0	
MTOR	2475	broad.mit.edu	37	1	11273588	11273588	+	Silent	SNP	C	T	T	rs147272284	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:11273588C>T	uc001asd.2	-	21	3274	c.3153G>A	c.(3151-3153)ACG>ACA	p.T1051T		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1051					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GAAGAATGATCGTGCTCTGAA	0.458000													32	72					0	0	1	0	0	
MTOR	2475	broad.mit.edu	37	1	11288885	11288885	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:11288885C>T	uc001asd.2	-	19	2991	c.2870G>A	c.(2869-2871)CGG>CAG	p.R957Q		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	957					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TCGGAAGATCCGCATCAGGGC	0.507000													29	52					0	0	1	0	0	
CLCN6	1185	broad.mit.edu	37	1	11888655	11888655	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:11888655C>T	uc001ate.3	+	12	1208	c.1095C>T	c.(1093-1095)AAC>AAT	p.N365N	CLCN6_uc009vnh.1_Intron|CLCN6_uc010oat.1_Silent_p.N81N|CLCN6_uc010oau.1_Silent_p.N343N	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	365					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GTATGCGAAACGTGCACCCGA	0.597000													12	123					0	0	1	0	0	
CLCN6	1185	broad.mit.edu	37	1	11894370	11894370	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:11894370G>A	uc001ate.3	+	16	1717	c.1604G>A	c.(1603-1605)CGC>CAC	p.R535H	CLCN6_uc010oat.1_Missense_Mutation_p.R251H|CLCN6_uc010oau.1_Missense_Mutation_p.R513H	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	535					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GGGGTGGTCCGCATGACCATC	0.557000													14	25					0	0	1	0	0	
CLCN6	1185	broad.mit.edu	37	1	11897527	11897527	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:11897527C>T	uc001ate.3	+	20	2379	c.2266C>T	c.(2266-2268)CGA>TGA	p.R756*	CLCN6_uc010oat.1_Nonsense_Mutation_p.R472*|CLCN6_uc010oau.1_Nonsense_Mutation_p.R734*|CLCN6_uc010oav.1_5'Flank|CLCN6_uc010oaw.1_5'Flank|CLCN6_uc010oax.1_5'Flank|CLCN6_uc010oay.1_5'Flank|CLCN6_uc010oaz.1_5'Flank|CLCN6_uc010oba.1_5'Flank	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	756	Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CCTGCTTGTCCGAGGAGTTTG	0.607000													26	31					0	0	1	0	0	
PRAMEF2	65122	broad.mit.edu	37	1	12920014	12920014	+	Missense_Mutation	SNP	G	A	A	rs3204808		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:12920014G>A	uc001aum.1	+	3	841	c.754G>A	c.(754-756)GAG>AAG	p.E252K		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	252											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TAATGAACTCGAGGGATGGTT	0.433000													39	104					0	0	1	0	0	
RSC1A1	6248	broad.mit.edu	37	1	15986518	15986518	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:15986518C>T	uc010obn.1	+	1	155	c.155C>T	c.(154-156)GCT>GTT	p.A52V	DDI2_uc001awx.1_3'UTR|DDI2_uc009voj.1_3'UTR	NM_006511	NP_006502	Q92681	RSCA1_HUMAN	regulatory solute carrier protein, family 1,	52					negative regulation of transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transport	cell junction|Golgi apparatus|nucleus	ion channel inhibitor activity			ovary(1)	1		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00276)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GAACCTAAAGCTGTGAAGGCT	0.448000													73	144					0	0	1	0	0	
CLCNKA	1187	broad.mit.edu	37	1	16354587	16354587	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:16354587G>A	uc001axu.2	+	10	1021	c.941G>A	c.(940-942)CGG>CAG	p.R314Q	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.R314Q|CLCNKA_uc010obw.1_Missense_Mutation_p.R271Q|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_5'Flank|CLCNKA_uc010oby.1_5'Flank	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	314					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	AAGACCAATCGGTACAGCTCC	0.562000													17	46					0	0	1	0	0	
CLCNKB	1188	broad.mit.edu	37	1	16380184	16380184	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:16380184T>C	uc001axw.3	+	16	1753	c.1673T>C	c.(1672-1674)CTG>CCG	p.L558P	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Missense_Mutation_p.L558P|CLCNKB_uc001axy.3_Missense_Mutation_p.L389P	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	558	CBS 1.				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		ATCACCACACTGGCCAAGGAC	0.622000													13	23					0	0	1	0	0	
MST1P2	11209	broad.mit.edu	37	1	16975153	16975153	+	RNA	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:16975153C>T	uc010och.1	+	7		c.1613C>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						TGCCCTGCGACGCTGCGGTGA	0.592000													6	72					0	0	1	0	0	
MST1P9	11223	broad.mit.edu	37	1	17085058	17085058	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:17085058C>T	uc010ock.1	-	11	1417	c.1417G>A	c.(1417-1419)GGC>AGC	p.G473S	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.G47S	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						ACCCTCTTGCCACACTTCTCA	0.607000													4	60					0	0	1	0	0	
MST1P9	11223	broad.mit.edu	37	1	17085304	17085304	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:17085304G>A	uc010ock.1	-	10	1387	c.1387C>T	c.(1387-1389)CGC>TGC	p.R463C	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Silent_p.D24D	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TCACCGCAGCGTCGCAGGGCA	0.582000													3	15					0	0	1	0	0	
ATP13A2	23400	broad.mit.edu	37	1	17331924	17331924	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:17331924C>T	uc001baa.2	-	3	423	c.233G>A	c.(232-234)CGG>CAG	p.R78Q	ATP13A2_uc001bab.2_Missense_Mutation_p.R78Q|ATP13A2_uc001bac.2_Missense_Mutation_p.R78Q	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	78	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		GTTGCAGGGCCGGAGCCGCAG	0.572000													7	6					0	0	1	0	0	
SDHB	6390	broad.mit.edu	37	1	17380511	17380511	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:17380511C>G	uc001bae.2	-	1	155	c.4G>C	c.(4-6)GCG>CCG	p.A2P		NM_003000	NP_002991	P21912	DHSB_HUMAN	succinate dehydrogenase complex, subunit B, iron	2					respiratory electron transport chain|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	2 iron, 2 sulfur cluster binding|3 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|protein binding|succinate dehydrogenase (ubiquinone) activity|ubiquinone binding			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0049)|COAD - Colon adenocarcinoma(227;1.18e-05)|BRCA - Breast invasive adenocarcinoma(304;2.41e-05)|Kidney(64;0.000188)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)	Succinic acid(DB00139)	ACCACCGCCGCCATCTTGGCT	0.672000			Mis|N|F			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome|Cowden_syndrome				4	15					0	0	1	0	0	
PADI2	11240	broad.mit.edu	37	1	17410241	17410241	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:17410241G>A	uc001baf.2	-	9	1112	c.1030C>T	c.(1030-1032)CGA>TGA	p.R344*	PADI2_uc010ocm.1_Nonsense_Mutation_p.R228*|PADI2_uc001bag.1_Nonsense_Mutation_p.R344*	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	344					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	CGATCGCCTCGGTTTAGGTAC	0.522000													28	49					0	0	1	0	0	
PADI3	51702	broad.mit.edu	37	1	17603150	17603150	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:17603150G>A	uc001bai.2	+	12	1484	c.1444G>A	c.(1444-1446)GAT>AAT	p.D482N		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	482					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CCCTGCCCCCGATGGGAAGGT	0.597000													16	48					0	0	1	0	0	
KLHDC7A	127707	broad.mit.edu	37	1	18809629	18809629	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:18809629C>T	uc001bax.2	+	1	2206	c.2154C>T	c.(2152-2154)TGC>TGT	p.C718C	KLHDC7A_uc009vpg.2_Silent_p.C500C	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	718						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCTTCCAGTGCGCCGTGGTGG	0.657000													30	36					0	0	1	0	0	
KIAA0090	23065	broad.mit.edu	37	1	19546113	19546113	+	Nonsense_Mutation	SNP	G	A	A	rs139335524		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:19546113G>A	uc001bbo.2	-	22	2795	c.2752C>T	c.(2752-2754)CGA>TGA	p.R918*	KIAA0090_uc001bbn.2_RNA|KIAA0090_uc001bbp.2_Nonsense_Mutation_p.R917*|KIAA0090_uc001bbq.2_Nonsense_Mutation_p.R917*|KIAA0090_uc001bbr.2_Nonsense_Mutation_p.R896*	NM_015047	NP_055862	Q8N766	K0090_HUMAN	hypothetical protein LOC23065 precursor	918	DUF1620.|Extracellular (Potential).					integral to membrane	protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|Breast(348;0.00366)|all_lung(284;0.00519)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.84e-05)|Kidney(64;0.000191)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|GBM - Glioblastoma multiforme(114;0.005)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		CCTCGCATTCGAGAAACTGTC	0.498000													19	52					0	0	1	0	0	
PLA2G5	5322	broad.mit.edu	37	1	20412716	20412716	+	Missense_Mutation	SNP	G	A	A	rs143614555		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:20412716G>A	uc001bcy.2	+	3	449	c.181G>A	c.(181-183)GAT>AAT	p.D61N	PLA2G5_uc001bcw.2_RNA|PLA2G5_uc001bcx.2_Missense_Mutation_p.D92N	NM_000929	NP_000920	P39877	PA2G5_HUMAN	phospholipase A2, group V precursor	61					lipid catabolic process	extracellular region	calcium ion binding|calcium-dependent phospholipase A2 activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000249)|Lung NSC(340;0.000287)|Breast(348;0.000812)|Ovarian(437;0.00328)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;8.15e-05)|Kidney(64;0.000184)|GBM - Glioblastoma multiforme(114;0.00089)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0652)		GGATGGCACCGATTGGTGAGC	0.403000													27	42					0	0	1	0	0	
LUZP1	7798	broad.mit.edu	37	1	23418572	23418572	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:23418572A>G	uc001bgk.2	-	4	2567	c.2183T>C	c.(2182-2184)ATG>ACG	p.M728T	LUZP1_uc010odv.1_Missense_Mutation_p.M728T|LUZP1_uc001bgl.2_Missense_Mutation_p.M728T|LUZP1_uc001bgm.1_Missense_Mutation_p.M728T	NM_033631	NP_361013	Q86V48	LUZP1_HUMAN	leucine zipper protein 1	728						nucleus					0		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Ovarian(437;0.00373)|Breast(348;0.00815)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.88e-27)|Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;4.31e-06)|GBM - Glioblastoma multiforme(114;8.64e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00176)|STAD - Stomach adenocarcinoma(196;0.0146)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0967)|LUSC - Lung squamous cell carcinoma(448;0.199)		TGGGAGCTCCATGGTATTGGT	0.483000													73	160					0	0	1	0	0	
HNRNPR	10236	broad.mit.edu	37	1	23637497	23637497	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:23637497C>T	uc001bgr.3	-	11	1511	c.1352G>A	c.(1351-1353)CGT>CAT	p.R451H	HNRNPR_uc001bgo.2_Missense_Mutation_p.R61H|HNRNPR_uc001bgp.3_Missense_Mutation_p.R454H|HNRNPR_uc009vqk.2_Missense_Mutation_p.R353H|HNRNPR_uc001bgs.3_Missense_Mutation_p.R350H|HNRNPR_uc010odw.1_Missense_Mutation_p.R413H|HNRNPR_uc010odx.1_Missense_Mutation_p.R291H|HNRNPR_uc009vql.2_Missense_Mutation_p.R312H	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	451	RNA-binding RGG-box.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		CCCCCCACCACGACCCCGACC	0.448000													26	69					0	0	1	0	0	
SRRM1	10250	broad.mit.edu	37	1	24995906	24995906	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:24995906C>T	uc001bjm.2	+	14	2256	c.2032C>T	c.(2032-2034)CCA>TCA	p.P678S	SRRM1_uc010oel.1_Missense_Mutation_p.P690S|SRRM1_uc009vrh.1_Missense_Mutation_p.P651S|SRRM1_uc009vri.1_Missense_Mutation_p.P607S	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	678	Pro-rich.|Necessary for speckles and matrix localization.|Arg-rich.|Ser-rich.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		ATCACCACAACCAAACAAACG	0.572000													8	24					0	0	1	0	0	
TMEM57	55219	broad.mit.edu	37	1	25785241	25785241	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:25785241G>A	uc001bkk.2	+	6	1214	c.1012G>A	c.(1012-1014)GCC>ACC	p.A338T	TMEM57_uc009vru.2_Intron|TMEM57_uc009vrv.2_Intron|TMEM57_uc009vrt.2_RNA	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	338						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		AAGTCATAGCGCCACAAATGG	0.413000													43	139					0	0	1	0	0	
ARID1A	8289	broad.mit.edu	37	1	27106699	27106699	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:27106699T>C	uc001bmv.1	+	20	6683	c.6310T>C	c.(6310-6312)TCC>CCC	p.S2104P	ARID1A_uc001bmu.1_Missense_Mutation_p.S1887P|ARID1A_uc001bmx.1_Missense_Mutation_p.S950P|ARID1A_uc009vsm.1_Missense_Mutation_p.S432P|ARID1A_uc009vsn.1_Missense_Mutation_p.S346P	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	2104					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GGACCCCTTTTCCACCCTGGG	0.577000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								31	66					0	0	1	0	0	
WASF2	10163	broad.mit.edu	37	1	27741399	27741399	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:27741399C>T	uc001bof.1	-	6	812	c.596G>A	c.(595-597)CGT>CAT	p.R199H	WASF2_uc010ofl.1_Missense_Mutation_p.R199H	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	199					actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		CTCTTCCTTACGTGTCTTGAT	0.398000													31	89					0	0	1	0	0	
PTAFR	5724	broad.mit.edu	37	1	28476590	28476590	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:28476590G>A	uc001bpl.2	-	2	1070	c.943C>T	c.(943-945)CGG>TGG	p.R315W	PTAFR_uc001bpm.3_Missense_Mutation_p.R315W|PTAFR_uc009vte.2_Missense_Mutation_p.R315W	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	315	Cytoplasmic (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		GAGCATTTCCGGCTACTGCGC	0.517000													33	55					0	0	1	0	0	
MATN1	4146	broad.mit.edu	37	1	31194315	31194315	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:31194315G>A	uc001brz.2	-	2	412	c.378C>T	c.(376-378)TTC>TTT	p.F126F	uc001bsb.1_RNA|MATN1_uc001bsa.1_5'Flank	NM_002379	NP_002370	P21941	MATN1_HUMAN	matrilin 1, cartilage matrix protein precursor	126	VWFA 1.				protein complex assembly	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			central_nervous_system(1)	1		Colorectal(325;0.00792)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)|Ovarian(437;0.0563)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-05)|COAD - Colon adenocarcinoma(152;0.000726)|STAD - Stomach adenocarcinoma(196;0.0183)|READ - Rectum adenocarcinoma(331;0.0649)		TGGTGATAGCGAACTGGATGG	0.627000													42	83					0	0	1	0	0	
LCK	3932	broad.mit.edu	37	1	32745586	32745586	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:32745586G>A	uc001bux.2	+	11	1324	c.1186G>A	c.(1186-1188)GCC>ACC	p.A396T	LCK_uc001buy.2_Missense_Mutation_p.A396T|LCK_uc001buz.2_Missense_Mutation_p.A426T|LCK_uc010ohc.1_Missense_Mutation_p.A440T|LCK_uc001bva.2_Missense_Mutation_p.A403T	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	396	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	CGAGTACACAGCCAGGGAGGG	0.582000			T	TRB@	T-ALL								12	34					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	1	33772942	33772942	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:33772942C>T	uc001bxd.1	-	5	448	c.448G>A	c.(448-450)GTG>ATG	p.V150M		NM_001080438	NP_001073907			RecName: Full=Alpha 1,3-galactosyltransferase 2;          Short=A3galt2;          EC=2.4.1.87; AltName: Full=Isoglobotriaosylceramide synthase; AltName: Full=iGb3 synthase;          Short=iGb3S; Flags: Precursor;																		CCCAGCGCCACGCGGGGCACC	0.721000													9	12					0	0	1	0	0	
SFPQ	6421	broad.mit.edu	37	1	35653617	35653617	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:35653617C>T	uc001bys.2	-	7	1865	c.1772G>A	c.(1771-1773)CGC>CAC	p.R591H	SFPQ_uc001byr.2_RNA	NM_005066	NP_005057	P23246	SFPQ_HUMAN	splicing factor proline/glutamine rich	591					alternative nuclear mRNA splicing, via spliceosome|DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|nucleotide binding|protein binding|protein binding|RNA binding		SFPQ/TFE3(6)	kidney(4)|soft_tissue(2)|ovary(1)|skin(1)	8		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				CTCTCTTTGGCGCCTCATTTG	0.458000			T	TFE3	papillary renal cell								57	121					0	0	1	0	0	
CLSPN	63967	broad.mit.edu	37	1	36229901	36229901	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:36229901A>T	uc001bzi.2	-	3	628	c.548T>A	c.(547-549)ATT>AAT	p.I183N	CLSPN_uc009vux.2_Missense_Mutation_p.I183N	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	183	Potential.				activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TAGCTGTCTAATTTTTTCCAT	0.313000													6	13					0	0	1	0	0	
GRIK3	2899	broad.mit.edu	37	1	37337827	37337827	+	Missense_Mutation	SNP	C	T	T	rs143358361		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:37337827C>T	uc001caz.2	-	4	829	c.694G>A	c.(694-696)GAC>AAC	p.D232N	GRIK3_uc001cba.1_Missense_Mutation_p.D232N	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	232	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity	p.D232N(1)		ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	TGGCTGCAGTCGAAGATAATG	0.612000													10	27					0	0	1	0	0	
MTF1	4520	broad.mit.edu	37	1	38281160	38281160	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:38281160G>A	uc001cce.1	-	11	2051	c.1910C>T	c.(1909-1911)GCA>GTA	p.A637V		NM_005955	NP_005946	Q14872	MTF1_HUMAN	metal-regulatory transcription factor 1	637						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			ovary(1)|pancreas(1)	2	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GTCCCGGCATGCACACTGACA	0.607000													13	22					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39934365	39934365	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:39934365G>T	uc010oiu.1	+	61	17310	c.17179G>T	c.(17179-17181)GCC>TCC	p.A5727S	MACF1_uc010ois.1_Missense_Mutation_p.A5219S|MACF1_uc001cde.1_Missense_Mutation_p.A96S|MACF1_uc001cdf.1_Missense_Mutation_p.A102S|MACF1_uc001cdg.2_Missense_Mutation_p.A10S|MACF1_uc001cdh.2_Missense_Mutation_p.A10S	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7177	C-terminal tail (By similarity).|GAR.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGGATGGATGGCCTTGGATGA	0.468000													17	29					2.23348e-06	2.2999e-06	1	1	0	
SLFNL1	200172	broad.mit.edu	37	1	41486058	41486058	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:41486058G>T	uc001cgm.1	-	2	495	c.275C>A	c.(274-276)GCC>GAC	p.A92D	SLFNL1_uc009vwf.1_Missense_Mutation_p.A92D|SLFNL1_uc001cgn.1_Missense_Mutation_p.A92D|SLFNL1_uc009vwg.1_Missense_Mutation_p.A92D	NM_144990	NP_659427	Q499Z3	SLNL1_HUMAN	schlafen-like 1	92							ATP binding			skin(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0393)				CAGTGCATAGGCCTTCCGCGG	0.672000													22	66					8.10497e-08	8.39002e-08	1	1	0	
FOXJ3	22887	broad.mit.edu	37	1	42645437	42645437	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:42645437G>A	uc001che.2	-	15	2125	c.1813C>T	c.(1813-1815)CGT>TGT	p.R605C	FOXJ3_uc001chf.2_Missense_Mutation_p.R605C|FOXJ3_uc001chg.2_Missense_Mutation_p.R605C	NM_014947	NP_055762	Q9UPW0	FOXJ3_HUMAN	forkhead box J3	605					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)	2	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GGCAGGGAACGCCGCATCTGG	0.507000													25	78					0	0	1	0	0	
CCDC30	728621	broad.mit.edu	37	1	43108274	43108274	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:43108274A>C	uc009vwk.1	+	12	1879	c.1769A>C	c.(1768-1770)CAG>CCG	p.Q590P	CCDC30_uc001chm.2_Missense_Mutation_p.Q288P|CCDC30_uc001chn.2_Missense_Mutation_p.Q379P	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	590	Potential.										0						TCTTCCATCCAGAGCAGGTAG	0.448000													43	87					0	0	1	0	0	
RNF220	55182	broad.mit.edu	37	1	45115379	45115379	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:45115379C>T	uc001clv.1	+	13	1852	c.1492C>T	c.(1492-1494)CGG>TGG	p.R498W	RNF220_uc001clw.1_Missense_Mutation_p.R498W|RNF220_uc010oky.1_Missense_Mutation_p.R285W|RNF220_uc010okz.1_Missense_Mutation_p.R240W|RNF220_uc001clx.1_Missense_Mutation_p.R214W|RNF220_uc001cly.1_Missense_Mutation_p.R178W|RNF220_uc001clz.1_Missense_Mutation_p.R177W|RNF220_uc001cma.1_Missense_Mutation_p.R177W|TMEM53_uc001cmb.1_Intron	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	498	Potential.				protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TCTGAAGGCTCGGGTCAGAGA	0.463000													26	58					0	0	1	0	0	
EIF2B3	8891	broad.mit.edu	37	1	45407191	45407191	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:45407191C>T	uc001cmt.1	-	4	568	c.441G>A	c.(439-441)GGG>GGA	p.G147G	EIF2B3_uc001cmu.1_Silent_p.G147G|EIF2B3_uc001cmv.1_Silent_p.G147G|EIF2B3_uc001cmw.2_Silent_p.G147G	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	147					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTTTTTTTTTCCCCTTTTGAC	0.338000													43	78					0	0	1	0	0	
LRRC41	10489	broad.mit.edu	37	1	46751470	46751470	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:46751470G>A	uc001cpn.2	-	4	1103	c.1059C>T	c.(1057-1059)GGC>GGT	p.G353G	LRRC41_uc010omb.1_Silent_p.G353G|LRRC41_uc001cpo.1_Silent_p.G353G	NM_006369	NP_006360	Q15345	LRC41_HUMAN	MUF1 protein	353										ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(166;0.155)					ACCGCTTGGTGCCAGGAGCCT	0.617000													22	33					0	0	1	0	0	
MOBKL2C	148932	broad.mit.edu	37	1	47078721	47078721	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:47078721G>A	uc001cqf.3	-	2	504	c.273C>T	c.(271-273)GCC>GCT	p.A91A	MKNK1_uc010omf.1_Intron|MOBKL2C_uc001cqe.3_Silent_p.A143A	NM_201403	NP_958805	Q70IA8	MOL2C_HUMAN	MOB1, Mps One Binder kinase activator-like 2C	91							metal ion binding			pancreas(1)	1	Acute lymphoblastic leukemia(166;0.155)					GGGGCCCGCCGGCCATGACCG	0.652000													9	22					0	0	1	0	0	
CYP4A11	1579	broad.mit.edu	37	1	47407043	47407043	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:47407043C>T	uc001cqp.3	-	1	114	c.63G>A	c.(61-63)GCG>GCA	p.A21A	CYP4A11_uc001cqq.2_Silent_p.A21A|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	21					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GCAGGGAGGCCGCTTGGAGGA	0.597000													26	72					0	0	1	0	0	
OSBPL9	114883	broad.mit.edu	37	1	52253026	52253026	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:52253026C>T	uc001cst.2	+	23	2021	c.2002C>T	c.(2002-2004)CTT>TTT	p.L668F	OSBPL9_uc001css.2_Missense_Mutation_p.L673F|OSBPL9_uc001csx.2_RNA|OSBPL9_uc009vza.2_Missense_Mutation_p.L669F|OSBPL9_uc001csu.2_Missense_Mutation_p.L678F|OSBPL9_uc001csv.2_Missense_Mutation_p.L503F|OSBPL9_uc001csw.2_Missense_Mutation_p.L655F|OSBPL9_uc001csy.2_Missense_Mutation_p.L490F|OSBPL9_uc001csz.2_Missense_Mutation_p.L490F|OSBPL9_uc001cta.2_Missense_Mutation_p.L558F|OSBPL9_uc001ctb.2_Missense_Mutation_p.L453F	NM_024586	NP_078862	Q96SU4	OSBL9_HUMAN	oxysterol binding protein-like 9 isoform e	668					lipid transport		lipid binding			central_nervous_system(1)	1						TTGTTTTAGCCTTTGGAAGGA	0.413000													35	58					0	0	1	0	0	
NRD1	4898	broad.mit.edu	37	1	52272466	52272466	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:52272466C>T	uc001ctc.3	-	20	2636	c.2314G>A	c.(2314-2316)GCA>ACA	p.A772T	NRD1_uc009vzb.2_Missense_Mutation_p.A467T|NRD1_uc001ctd.3_Missense_Mutation_p.A704T|NRD1_uc001cte.2_Missense_Mutation_p.A640T|NRD1_uc001ctf.2_Missense_Mutation_p.A704T|NRD1_uc010ong.1_RNA	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	703					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						AACATTTTACCTTTGGGGATT	0.234000													9	89					0	0	1	0	0	
DIO1	1733	broad.mit.edu	37	1	54360030	54360030	+	Silent	SNP	T	C	C	rs147857941		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:54360030T>C	uc010onx.1	+	1	170	c.147T>C	c.(145-147)GGT>GGC	p.G49G	DIO1_uc010onw.1_Splice_Site_p.G49_splice|DIO1_uc009vzl.2_Silent_p.G49G|DIO1_uc001cwb.2_Silent_p.G49G|DIO1_uc010ony.1_Silent_p.G49G|DIO1_uc001cwd.2_Splice_Site|DIO1_uc001cwe.2_Splice_Site|DIO1_uc001cwf.2_RNA|DIO1_uc001cwg.2_RNA	NM_000792	NP_000783	P49895	IOD1_HUMAN	deiodinase, iodothyronine, type I isoform a	49					hormone biosynthetic process|thyroid hormone generation	endoplasmic reticulum membrane|integral to membrane|plasma membrane	selenium binding|thyroxine 5'-deiodinase activity				0						AGAAGACGGGTATGACCAGGA	0.522000													26	78					0	0	1	0	0	
C1orf87	127795	broad.mit.edu	37	1	60456436	60456436	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:60456436C>A	uc001czs.1	-	12	1642	c.1550G>T	c.(1549-1551)AGC>ATC	p.S517I	C1orf87_uc001czr.1_Missense_Mutation_p.S109I	NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	517							calcium ion binding			ovary(1)|breast(1)	2						TTTCTGAGGGCTCAGGGACAG	0.493000													81	170					1.92282e-43	2.09611e-43	1	1	0	
LEPROT	54741	broad.mit.edu	37	1	65895579	65895579	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:65895579G>A	uc001dcf.2	+	3	216	c.127G>A	c.(127-129)GCC>ACC	p.A43T	LEPR_uc001dcg.2_Intron|LEPR_uc001dch.2_Intron|LEPR_uc001dci.2_Intron|LEPR_uc009waq.2_Intron|LEPROT_uc009wap.2_Missense_Mutation_p.A52T	NM_017526	NP_059996	O15243	OBRG_HUMAN	leptin receptor gene-related protein	43	Helical; (Potential).					endosome membrane|Golgi membrane|integral to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		GATTTTCCACGCCATCTCCCC	0.443000													69	133					0	0	1	0	0	
C1orf141	400757	broad.mit.edu	37	1	67561960	67561960	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:67561960G>A	uc001ddl.1	-	5	502	c.391C>T	c.(391-393)CTC>TTC	p.L131F	C1orf141_uc001ddm.1_Missense_Mutation_p.L131F|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	131										ovary(1)	1						CCTTCTAAGAGACCAACAGAA	0.264000													4	26					0	0	1	0	0	
C1orf173	127254	broad.mit.edu	37	1	75072545	75072545	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:75072545G>A	uc001dgg.2	-	10	1448	c.1229C>T	c.(1228-1230)CCG>CTG	p.P410L	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.P204L	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	410										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCTAGATTTCGGCAAAGACGG	0.408000													41	154					0	0	1	0	0	
ASB17	127247	broad.mit.edu	37	1	76397757	76397757	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:76397757C>T	uc001dhe.1	-	1	360	c.220G>A	c.(220-222)GTG>ATG	p.V74M	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	74					intracellular signal transduction					ovary(1)	1						GATTTTTCCACAAATGCAATG	0.378000													21	61					0	0	1	0	0	
CLCA4	22802	broad.mit.edu	37	1	87036905	87036905	+	Missense_Mutation	SNP	A	C	C	rs2839932		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:87036905A>C	uc009wcs.2	+	8	1372	c.1328A>C	c.(1327-1329)GAT>GCT	p.D443A	CLCA4_uc009wct.2_Missense_Mutation_p.D206A|CLCA4_uc009wcu.2_Missense_Mutation_p.D263A	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	443	VWFA.					apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		AGAGCTGCTGATGAAGCAGTA	0.393000													43	72					0	0	1	0	0	
GTF2B	2959	broad.mit.edu	37	1	89323037	89323037	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:89323037A>G	uc001dmo.3	-	6	788	c.669T>C	c.(667-669)TGT>TGC	p.C223C		NM_001514	NP_001505	Q00403	TF2B_HUMAN	general transcription factor IIB	223	2.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	nucleoplasm	thyroid hormone receptor binding|translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0131)|Epithelial(280;0.0255)		GTTTAGGAAGACAAAGGTTGG	0.468000													19	41					0	0	1	0	0	
TGFBR3	7049	broad.mit.edu	37	1	92185008	92185008	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:92185008G>A	uc001doh.2	-	10	1893	c.1427C>T	c.(1426-1428)TCG>TTG	p.S476L	TGFBR3_uc009wde.2_Missense_Mutation_p.S253L|TGFBR3_uc010osy.1_Missense_Mutation_p.S434L|TGFBR3_uc001doi.2_Missense_Mutation_p.S475L|TGFBR3_uc001doj.2_Missense_Mutation_p.S475L	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	476	ZP.|Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		GTCCATCCCCGAGTAGCCACT	0.512000													21	48					0	0	1	0	0	
SNX7	51375	broad.mit.edu	37	1	99156668	99156668	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:99156668T>A	uc010ouc.1	+	3	453	c.401T>A	c.(400-402)GTT>GAT	p.V134D	SNX7_uc001dsa.2_Missense_Mutation_p.V70D|SNX7_uc010oud.1_Missense_Mutation_p.V134D	NM_015976	NP_057060	Q9UNH6	SNX7_HUMAN	sorting nexin 7 isoform a	70	PX.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		all_epithelial(167;7.64e-07)|all_lung(203;0.0006)|Lung NSC(277;0.00137)		Epithelial(280;0.0521)|all cancers(265;0.0687)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.207)|Colorectal(170;0.234)		GAATTTGAAGTTAGGAGACGA	0.363000													14	31					0	0	1	0	0	
VCAM1	7412	broad.mit.edu	37	1	101194858	101194858	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:101194858T>G	uc001dti.2	+	5	1244	c.1124T>G	c.(1123-1125)TTT>TGT	p.F375C	VCAM1_uc001dtj.2_Intron|VCAM1_uc010ouj.1_Missense_Mutation_p.F313C	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	375	Ig-like C2-type 4.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	CCTGTGAGTTTTGAGAACGAA	0.502000													28	107					0	0	1	0	0	
COL11A1	1301	broad.mit.edu	37	1	103352527	103352527	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:103352527G>A	uc001dul.2	-	63	5012	c.4694C>T	c.(4693-4695)GCA>GTA	p.A1565V	COL11A1_uc001duk.2_Missense_Mutation_p.A761V|COL11A1_uc001dum.2_Missense_Mutation_p.A1577V|COL11A1_uc001dun.2_Missense_Mutation_p.A1526V|COL11A1_uc009weh.2_Missense_Mutation_p.A1449V	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1565					collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ATTATCATCTGCATCTGCTTG	0.393000													41	76					0	0	1	0	0	
PRPF38B	55119	broad.mit.edu	37	1	109238368	109238368	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:109238368G>A	uc001dvv.3	+	2	603	c.321G>A	c.(319-321)GCG>GCA	p.A107A	PRPF38B_uc001dvw.3_5'UTR|PRPF38B_uc010ouz.1_5'UTR	NM_018061	NP_060531	Q5VTL8	PR38B_HUMAN	PRP38 pre-mRNA processing factor 38 (yeast)	107					mRNA processing|RNA splicing	spliceosomal complex					0		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0149)|Lung(183;0.0888)|COAD - Colon adenocarcinoma(174;0.113)|Epithelial(280;0.161)		GGAAAACAGCGGGCCAGACAG	0.403000													10	23					0	0	1	0	0	
SCARNA2	677766	broad.mit.edu	37	1	109642959	109642959	+	RNA	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:109642959C>T	uc001dwo.1	+	1		c.145C>T				NR_003023				Homo sapiens cDNA clone IMAGE:6602628, partial cds.												0						AGTGCGTGCGCCCACCCCTGC	0.637000													16	33					0	0	1	0	0	
CELSR2	1952	broad.mit.edu	37	1	109805496	109805496	+	Missense_Mutation	SNP	G	A	A	rs148197539		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:109805496G>A	uc001dxa.3	+	7	4674	c.4613G>A	c.(4612-4614)CGA>CAA	p.R1538Q		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	1538	Extracellular (Potential).|Laminin G-like 1.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TTCCCAGTCCGAATGCGGCAG	0.627000													25	45					0	0	1	0	0	
FAM40A	85369	broad.mit.edu	37	1	110587676	110587676	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:110587676C>T	uc001dza.1	+	12	1411	c.1392C>T	c.(1390-1392)CAC>CAT	p.H464H	FAM40A_uc001dyz.1_Silent_p.H369H|FAM40A_uc009wfp.1_Silent_p.H288H	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	464						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		GGCCAATCCACGAAAGCATCA	0.517000													16	23					0	0	1	0	0	
KCNA3	3738	broad.mit.edu	37	1	111216807	111216807	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:111216807G>A	uc001dzv.1	-	1	849	c.625C>T	c.(625-627)CGG>TGG	p.R209W		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	209						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGCAAGGGCCGCTCCTCCTCC	0.682000													4	51					0	0	1	0	0	
KCNA3	3738	broad.mit.edu	37	1	111217049	111217049	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:111217049G>A	uc001dzv.1	-	1	607	c.383C>T	c.(382-384)ACG>ATG	p.T128M		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	128						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCCCAGCAGCGTCTCGGGGAA	0.662000													30	53					0	0	1	0	0	
DRAM2	128338	broad.mit.edu	37	1	111663273	111663273	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:111663273T>C	uc001ead.3	-	6	639	c.382A>G	c.(382-384)ACC>GCC	p.T128A	DRAM2_uc001eae.3_Missense_Mutation_p.T128A|DRAM2_uc009wfy.2_RNA|DRAM2_uc001eaf.3_5'UTR	NM_178454	NP_848549	Q6UX65	DRAM2_HUMAN	transmembrane protein 77	128	Helical; (Potential).				apoptosis|induction of apoptosis	Golgi apparatus|integral to membrane|lysosomal membrane					0						ATACCAAAGGTAAGCACAGCT	0.403000													16	49					0	0	1	0	0	
HIPK1	204851	broad.mit.edu	37	1	114483980	114483980	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:114483980T>C	uc001eem.2	+	2	1136	c.975T>C	c.(973-975)GAT>GAC	p.D325D	HIPK1_uc001eel.2_Silent_p.D325D|HIPK1_uc001een.2_Silent_p.D325D	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	325	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGCTGGTTGATCCAGTTCGCC	0.493000													48	72					0	0	1	0	0	
PTGFRN	5738	broad.mit.edu	37	1	117492145	117492145	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:117492145A>C	uc001egv.1	+	4	1301	c.1164A>C	c.(1162-1164)AAA>AAC	p.K388N		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	388	Ig-like C2-type 3.|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		GCTGGCACAAAGTGGCAGAGG	0.542000													22	49					0	0	1	0	0	
PDE4DIP	9659	broad.mit.edu	37	1	144903085	144903085	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:144903085G>A	uc001elw.3	-	21	3098	c.2807C>T	c.(2806-2808)GCC>GTC	p.A936V	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.A1002V|PDE4DIP_uc001emc.1_Missense_Mutation_p.A936V|PDE4DIP_uc001emd.1_Missense_Mutation_p.A936V|PDE4DIP_uc001emb.1_Missense_Mutation_p.A1099V|PDE4DIP_uc001eme.1_Intron|PDE4DIP_uc001emf.1_Missense_Mutation_p.A721V	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	936	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ACCTCCAATGGCGGCCAGGGT	0.552000			T	PDGFRB	MPD								22	104					0	0	1	0	0	
PDE4DIP	9659	broad.mit.edu	37	1	145015939	145015939	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:145015939G>A	uc001elx.3	-	3	484	c.149C>T	c.(148-150)CCG>CTG	p.P50L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_Missense_Mutation_p.P50L|PDE4DIP_uc001elo.2_Missense_Mutation_p.P121L|PDE4DIP_uc001emh.2_Missense_Mutation_p.P121L|uc001emj.2_Intron	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:Variant_position_missing_in_Q5VU43_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTGCACAAACGGGACCTTTTC	0.443000			T	PDGFRB	MPD								38	468					0	0	1	0	0	
LOC728989	728989	broad.mit.edu	37	1	146496384	146496384	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:146496384A>G	uc001epd.2	-	2	190	c.116T>C	c.(115-117)ATA>ACA	p.I39T		NR_024442				SubName: Full=cDNA FLJ59595, highly similar to Homo sapiens phosphodiesterase 4D interacting protein, transcript variant 1, mRNA;												0						TCTGTTGATTATGGCCGTTTC	0.468000													22	36					0	0	1	0	0	
PSMD4	5710	broad.mit.edu	37	1	151239749	151239749	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:151239749C>A	uc001exl.2	+	10	1126	c.1064C>A	c.(1063-1065)GCT>GAT	p.A355D	PSMD4_uc001exn.2_Missense_Mutation_p.A358D	NM_002810	NP_002801	P55036	PSMD4_HUMAN	proteasome 26S non-ATPase subunit 4	355					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding|zinc ion binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ATTCGAAATGCTATGGGCTCC	0.547000													35	59					1.26612e-14	1.3494e-14	1	1	0	
POGZ	23126	broad.mit.edu	37	1	151377819	151377819	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:151377819T>C	uc001eyd.1	-	19	3998	c.3692A>G	c.(3691-3693)CAT>CGT	p.H1231R	POGZ_uc001eye.1_Missense_Mutation_p.H1178R|POGZ_uc010pdb.1_Missense_Mutation_p.H1222R|POGZ_uc001eyf.1_Missense_Mutation_p.H1187R|POGZ_uc010pdc.1_Missense_Mutation_p.H1169R|POGZ_uc009wmv.1_Missense_Mutation_p.H1136R|POGZ_uc010pdd.1_Missense_Mutation_p.H722R	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	1231	DDE.				cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GTGAGTGCGATGACAGTCCAT	0.527000													31	46					0	0	1	0	0	
HRNR	388697	broad.mit.edu	37	1	152188393	152188393	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:152188393T>C	uc001ezt.1	-	3	5788	c.5712A>G	c.(5710-5712)TCA>TCG	p.S1904S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1904	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGACTGTCCTGACCTAGAGC	0.552000													57	704					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152281389	152281389	+	Silent	SNP	C	T	T	rs138652718	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:152281389C>T	uc001ezu.1	-	3	6009	c.5973G>A	c.(5971-5973)GCG>GCA	p.A1991A		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1991	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CATGGGATGACGCAGCCTGTC	0.572000									Ichthyosis				37	567					0	0	1	0	0	
LCE2A	353139	broad.mit.edu	37	1	152671618	152671618	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:152671618C>T	uc001faj.2	+	2	292	c.241C>T	c.(241-243)CGG>TGG	p.R81W		NM_178428	NP_848515	Q5TA79	LCE2A_HUMAN	late cornified envelope 2A	81	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCACCGGCACCGGCACCAGAG	0.672000													22	41					0	0	1	0	0	
LCE1F	353137	broad.mit.edu	37	1	152749084	152749084	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:152749084C>T	uc010pdv.1	+	1	237	c.237C>T	c.(235-237)CAC>CAT	p.H79H		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	79					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCTGAGCCACCACAGACGGC	0.706000													7	29					0	0	1	0	0	
LCE1A	353131	broad.mit.edu	37	1	152799957	152799957	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:152799957C>T	uc010pdw.1	+	1	9	c.9C>T	c.(7-9)TGC>TGT	p.C3C		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	3	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGATGTCCTGCCAGCAGAGCC	0.368000													15	57					0	0	1	0	0	
UBAP2L	9898	broad.mit.edu	37	1	154201200	154201200	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:154201200C>T	uc001fep.3	+	4	445	c.278C>T	c.(277-279)ACG>ATG	p.T93M	UBAP2L_uc009wot.2_Missense_Mutation_p.T93M|UBAP2L_uc010pek.1_Missense_Mutation_p.T92M|UBAP2L_uc010pel.1_Missense_Mutation_p.T92M|UBAP2L_uc001fen.1_Missense_Mutation_p.T92M|UBAP2L_uc010pem.1_Missense_Mutation_p.T92M|UBAP2L_uc010pen.1_Translation_Start_Site	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	93					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			AACCCAGACACGGTAGAGTGC	0.433000													27	55					0	0	1	0	0	
DCST1	149095	broad.mit.edu	37	1	155007180	155007180	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:155007180T>A	uc001fgn.1	+	4	335	c.239T>A	c.(238-240)ATT>AAT	p.I80N	DCST2_uc001fgm.2_5'Flank|DCST2_uc009wpb.2_5'Flank|DCST1_uc010per.1_Missense_Mutation_p.I105N|DCST1_uc010pes.1_Intron	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	80	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(1)|skin(1)	2	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			GAACAGAAGATTATGTTCTTG	0.532000													25	49					0	0	1	0	0	
CLK2	1196	broad.mit.edu	37	1	155233110	155233110	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:155233110G>A	uc001fjy.2	-	13	1689	c.1399C>T	c.(1399-1401)CGG>TGG	p.R467W	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjr.2_5'Flank|SCAMP3_uc001fjs.2_5'Flank|SCAMP3_uc001fju.2_5'Flank|SCAMP3_uc001fjv.2_5'Flank|SCAMP3_uc001fjt.2_5'Flank|CLK2_uc001fjw.2_Missense_Mutation_p.R466W|CLK2_uc001fjx.2_Missense_Mutation_p.R239W|CLK2_uc009wqm.2_Missense_Mutation_p.R467W	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	467	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			AAGGTCAGCCGCTTAGCTGGT	0.572000								Other_conserved_DNA_damage_response_genes					10	27					0	0	1	0	0	
RUSC1	23623	broad.mit.edu	37	1	155300301	155300301	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:155300301G>A	uc001fkj.2	+	10	2877	c.2648G>A	c.(2647-2649)CGC>CAC	p.R883H	RAG1AP1_uc010pey.1_Intron|RUSC1_uc001fkk.2_Missense_Mutation_p.R777H|RUSC1_uc009wqn.1_RNA|RUSC1_uc009wqo.1_Missense_Mutation_p.R414H|RUSC1_uc001fkl.2_Missense_Mutation_p.R473H|RUSC1_uc001fkp.2_Missense_Mutation_p.R414H|RUSC1_uc001fkq.2_Missense_Mutation_p.R308H|RUSC1_uc010pgb.1_Missense_Mutation_p.R381H|RUSC1_uc009wqp.1_Missense_Mutation_p.R408H|RUSC1_uc001fkn.2_Missense_Mutation_p.R192H|RUSC1_uc001fko.2_RNA|RUSC1_uc001fkr.2_Missense_Mutation_p.R414H|RUSC1_uc001fks.2_Missense_Mutation_p.R150H	NM_001105203	NP_001098673	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1 isoform a	883	SH3.					cytoplasm|nucleolus	SH3/SH2 adaptor activity			ovary(2)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			GACTGGCTCCGCTGTGGGCGG	0.602000													11	27					0	0	1	0	0	
SSR2	6746	broad.mit.edu	37	1	155989860	155989860	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:155989860G>A	uc001fmx.2	-	2	179	c.99C>T	c.(97-99)TAC>TAT	p.Y33Y	SSR2_uc001fmw.2_RNA|SSR2_uc001fmy.2_RNA|SSR2_uc010pgv.1_Silent_p.Y52Y|SSR2_uc010pgw.1_Silent_p.Y52Y	NM_003145	NP_003136	P43308	SSRB_HUMAN	signal sequence receptor, beta precursor	33	Lumenal (Potential).				cotranslational protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane	signal sequence binding				0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCTCCACGGCGTATCTGTTCA	0.488000													20	44					0	0	1	0	0	
C1orf85	112770	broad.mit.edu	37	1	156264771	156264771	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:156264771G>A	uc001foh.2	-	2	170	c.157C>T	c.(157-159)CTG>TTG	p.L53L	C1orf85_uc001fof.3_5'Flank|C1orf85_uc001fog.1_RNA|C1orf85_uc001foi.2_Silent_p.L53L|C1orf85_uc009wrx.2_Silent_p.L53L|C1orf85_uc001foj.2_Intron	NM_144580	NP_653181	Q8WWB7	NCUG1_HUMAN	kidney predominant protein NCU-G1 precursor	53	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter	cytosol|integral to membrane|lysosomal membrane|nucleus	ligand-dependent nuclear receptor activity|protein binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2	Hepatocellular(266;0.158)					AGGTTCTGCAGGGGGCCCAGC	0.567000													16	23					0	0	1	0	0	
IQGAP3	128239	broad.mit.edu	37	1	156498742	156498742	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:156498742G>A	uc001fpf.2	-	35	4612	c.4537C>T	c.(4537-4539)CGG>TGG	p.R1513W		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1513					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGGCAGGCCCGGATGTACTGG	0.582000													23	41					0	0	1	0	0	
NES	10763	broad.mit.edu	37	1	156642653	156642653	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:156642653C>A	uc001fpq.2	-	4	1460	c.1327G>T	c.(1327-1329)GGA>TGA	p.G443*		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	443	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCCTCTGGTCCAGGCAGGACG	0.667000													13	61					7.03913e-09	7.34698e-09	1	1	0	
MIR765	768220	broad.mit.edu	37	1	156905984	156905984	+	RNA	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:156905984C>T	hsa-mir-765|MI0005116	-			c.53C>T			ARHGEF11_uc010phu.1_Intron|ARHGEF11_uc001fqn.2_Intron|ARHGEF11_uc001fqo.2_Intron																	0						CCCAGTTTCTCGTAGGGCTTG	0.488000													20	37					0	0	1	0	0	
ETV3L	440695	broad.mit.edu	37	1	157062449	157062449	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:157062449G>T	uc001fqq.1	-	5	1363	c.1078C>A	c.(1078-1080)CCT>ACT	p.P360T		NM_001004341	NP_001004341	Q6ZN32	ETV3L_HUMAN	ets variant 3-like	360						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Hepatocellular(266;0.158)	Prostate(1639;0.184)				AGTTAAGGAGGATCCAAGGGC	0.577000													10	31					0.000673444	0.000680768	1	1	0	
CD1D	912	broad.mit.edu	37	1	158151369	158151369	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:158151369G>A	uc001frr.2	+	3	685	c.186G>A	c.(184-186)TCG>TCA	p.S62S	CD1D_uc009wsr.1_Silent_p.S62S|CD1D_uc009wss.2_Silent_p.S62S|CD1D_uc009wst.1_5'UTR	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	62	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					GCAACGACTCGGACACCGTCC	0.617000													42	89					0	0	1	0	0	
OR10R2	343406	broad.mit.edu	37	1	158449951	158449951	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:158449951T>C	uc010pik.1	+	1	284	c.284T>C	c.(283-285)TTT>TCT	p.F95S	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	95	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					TTCTACACCTTTGTCATTCTA	0.433000													62	135					0	0	1	0	0	
SLAMF9	89886	broad.mit.edu	37	1	159922266	159922266	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:159922266G>A	uc001fus.2	-	3	567	c.450C>T	c.(448-450)TGC>TGT	p.C150C	SLAMF9_uc009wtd.2_Intron|SLAMF9_uc001fut.2_Intron	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	150	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGGACATACTGCAGGCACCTT	0.537000													38	72					0	0	1	0	0	
PVRL4	81607	broad.mit.edu	37	1	161049551	161049551	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:161049551C>T	uc001fxo.2	-	2	567	c.268G>A	c.(268-270)GTG>ATG	p.V90M		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	90	Ig-like V-type 1.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			GCCGGGCTCACATGAAGCCCG	0.692000													28	31					0	0	1	0	0	
PFDN2	5202	broad.mit.edu	37	1	161072141	161072141	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:161072141G>A	uc001fxu.2	-	2	150	c.100C>T	c.(100-102)CGG>TGG	p.R34W		NM_012394	NP_036526	Q9UHV9	PFD2_HUMAN	prefoldin subunit 2	34				GFNRLR -> SFNAF (in Ref. 3; AAF36151).	'de novo' posttranslational protein folding	prefoldin complex	unfolded protein binding				0	all_cancers(52;1.84e-19)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TGTTCCTGCCGAAGGCGGTTG	0.527000													19	53					0	0	1	0	0	
ADAMTS4	9507	broad.mit.edu	37	1	161167952	161167952	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:161167952G>A	uc001fyt.3	-	1	894	c.466C>T	c.(466-468)CGG>TGG	p.R156W	ADAMTS4_uc001fyu.2_Missense_Mutation_p.R156W|NDUFS2_uc001fyv.2_5'Flank	NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	156					proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			TCAGCCCCCCGATATTGTAAC	0.632000													13	63					0	0	1	0	0	
HSPA6	3310	broad.mit.edu	37	1	161494851	161494851	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:161494851G>A	uc001gap.2	+	2	1063	c.403G>A	c.(403-405)GCG>ACG	p.A135T	HSPA6_uc001gaq.2_Missense_Mutation_p.A135T	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	135					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GACGGCCGAGGCGTACCTGGG	0.647000													7	15					0	0	1	0	0	
DDR2	4921	broad.mit.edu	37	1	162749984	162749984	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:162749984G>A	uc001gcf.2	+	19	2981	c.2516G>A	c.(2515-2517)CGT>CAT	p.R839H	DDR2_uc001gcg.2_Missense_Mutation_p.R839H|uc001gch.1_5'Flank	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	839	Cytoplasmic (Potential).|Protein kinase.				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			ACGAAGAACCGTCCCTCATTC	0.498000													33	79					0	0	1	0	0	
RGS16	6004	broad.mit.edu	37	1	182571596	182571596	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:182571596A>G	uc001gpl.3	-	3	333	c.179T>C	c.(178-180)CTG>CCG	p.L60P	RGS16_uc010pnv.1_Missense_Mutation_p.L60P	NM_002928	NP_002919	O15492	RGS16_HUMAN	regulator of G-protein signalling 16	60					negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(1)	1						TCTCCACCCCAGCACATCTTC	0.383000													5	34					0	0	1	0	0	
RGL1	23179	broad.mit.edu	37	1	183895311	183895311	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:183895311G>A	uc001gqo.2	+	18	2349	c.2192G>A	c.(2191-2193)CGC>CAC	p.R731H	RGL1_uc001gqm.2_Missense_Mutation_p.R766H|RGL1_uc010pog.1_Missense_Mutation_p.R729H|RGL1_uc010poh.1_Missense_Mutation_p.R729H|RGL1_uc010poi.1_Missense_Mutation_p.R702H	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	731	Ras-associating.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						TTCATTTTGCGCAAAAAGAAC	0.453000													21	73					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	186106744	186106744	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:186106744A>G	uc001grq.1	+	88	13926	c.13697A>G	c.(13696-13698)AAG>AGG	p.K4566R	HMCN1_uc001grs.1_Missense_Mutation_p.K135R	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4566	TSP type-1 1.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AATGGTGGGAAGCCCTGCCAA	0.493000													14	32					0	0	1	0	0	
CFHR3	10878	broad.mit.edu	37	1	196759285	196759285	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:196759285T>C	uc001gtl.2	+	5	811	c.724T>C	c.(724-726)TAC>CAC	p.Y242H	CFHR3_uc010poy.1_Missense_Mutation_p.Y181H|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	242	Sushi 4.					extracellular space					0						ATGCCAGCCCTACTATGAACT	0.433000													60	35					0	0	1	0	0	
ASPM	259266	broad.mit.edu	37	1	197073026	197073026	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:197073026A>G	uc001gtu.2	-	18	5612	c.5355T>C	c.(5353-5355)TAT>TAC	p.Y1785Y	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1785					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TGTATGCATGATAGTAATTCT	0.368000													7	136					0	0	1	0	0	
NR5A2	2494	broad.mit.edu	37	1	200017448	200017448	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:200017448C>T	uc001gvb.2	+	5	818	c.612C>T	c.(610-612)CCC>CCT	p.P204P	NR5A2_uc001gvc.2_Silent_p.P158P|NR5A2_uc009wzh.2_Silent_p.P164P|NR5A2_uc010pph.1_Silent_p.P132P	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	204					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					AAGCTATGCCCTCTGACCTGA	0.498000													45	118					0	0	1	0	0	
IGFN1	91156	broad.mit.edu	37	1	201184737	201184737	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:201184737G>A	uc001gwc.2	+	4	1318	c.546G>A	c.(544-546)CCG>CCA	p.P182P	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CTGGGAAGCCGGTGATAGTGA	0.562000													16	33					0	0	1	0	0	
NAV1	89796	broad.mit.edu	37	1	201751434	201751434	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:201751434C>T	uc001gwu.2	+	6	2141	c.1794C>T	c.(1792-1794)CGC>CGT	p.R598R	NAV1_uc001gwv.1_Silent_p.R106R|NAV1_uc001gww.1_Silent_p.R207R|NAV1_uc001gwx.2_Silent_p.R207R|NAV1_uc001gwy.1_5'UTR	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	598					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						GCATTGCTCGCCCCTCCACTT	0.582000													20	45					0	0	1	0	0	
LGR6	59352	broad.mit.edu	37	1	202276051	202276051	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:202276051A>G	uc001gxu.2	+	13	1192	c.1192A>G	c.(1192-1194)AGC>GGC	p.S398G	LGR6_uc001gxv.2_Missense_Mutation_p.S346G|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.S259G|LGR6_uc009xac.1_RNA	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	398	Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						CAGCCAGCTGAGCTCCCTGCA	0.597000													13	30					0	0	1	0	0	
PPFIA4	8497	broad.mit.edu	37	1	203044748	203044748	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:203044748G>A	uc001gyz.2	+	16	2512	c.1919G>A	c.(1918-1920)CGC>CAC	p.R640H	PPFIA4_uc009xaj.2_Missense_Mutation_p.R1271H|PPFIA4_uc010pqf.1_Missense_Mutation_p.R853H|PPFIA4_uc001gza.2_Missense_Mutation_p.R631H|PPFIA4_uc001gzb.1_Missense_Mutation_p.R326H|PPFIA4_uc001gzc.1_Missense_Mutation_p.R182H	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	640					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						TGGAGGAAGCGCTTCCGGCCG	0.706000													7	17					0	0	1	0	0	
CHIT1	1118	broad.mit.edu	37	1	203192711	203192711	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:203192711C>T	uc001gzn.2	-	5	488	c.392G>A	c.(391-393)AGC>AAC	p.S131N	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_5'Flank|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Missense_Mutation_p.S122N	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	131					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						GCCGTCAAAGCTGTATTTGCG	0.562000													25	67					0	0	1	0	0	
SLC26A9	115019	broad.mit.edu	37	1	205899107	205899107	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:205899107G>A	uc001hdq.2	-	6	744	c.630C>T	c.(628-630)GCC>GCT	p.A210A	SLC26A9_uc001hdo.2_5'Flank|SLC26A9_uc001hdp.2_Silent_p.A210A	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	210	Helical; (Potential).					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GCAGGCCGGCGGCCGTCATGA	0.572000													14	24					0	0	1	0	0	
CTSE	1510	broad.mit.edu	37	1	206331126	206331126	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:206331126T>C	uc001hdu.2	+	9	1250	c.1132T>C	c.(1132-1134)TTT>CTT	p.F378L	CTSE_uc001hdv.2_Silent_p.S330S|CTSE_uc010prs.1_Silent_p.S255S	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	383					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			CATTCGACAGTTTTACTCAGT	0.567000													41	70					0	0	1	0	0	
C1orf107	27042	broad.mit.edu	37	1	210016834	210016834	+	Missense_Mutation	SNP	G	A	A	rs138648804		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:210016834G>A	uc001hhr.1	+	11	1896	c.1820G>A	c.(1819-1821)CGT>CAT	p.R607H	C1orf107_uc009xcu.1_Missense_Mutation_p.R322H	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	607					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		CCACAGTATCGTGATGCAGTC	0.398000													14	25					0	0	1	0	0	
CENPF	1063	broad.mit.edu	37	1	214820743	214820743	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:214820743A>C	uc001hkm.2	+	13	8004	c.7830A>C	c.(7828-7830)AAA>AAC	p.K2610N		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2706	Potential.|Sufficient for self-association.|Sufficient for centromere localization.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		TTGTTGAAAAAGTAAGTGGCT	0.353000													7	21					0	0	1	0	0	
USH2A	7399	broad.mit.edu	37	1	216496917	216496917	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:216496917C>T	uc001hku.1	-	8	1836	c.1449G>A	c.(1447-1449)ACG>ACA	p.T483T	USH2A_uc001hkv.2_Silent_p.T483T	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	483	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACCTTATTTGCGTGGCTTTTA	0.408000										HNSCC(13;0.011)			28	99					0	0	1	0	0	
USH2A	7399	broad.mit.edu	37	1	216498890	216498890	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:216498890T>C	uc001hku.1	-	6	1287	c.900A>G	c.(898-900)TCA>TCG	p.S300S	USH2A_uc001hkv.2_Silent_p.S300S	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	300	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AACGGCAATGTGATTGGGCAT	0.507000										HNSCC(13;0.011)			21	34					0	0	1	0	0	
DUSP10	11221	broad.mit.edu	37	1	221879616	221879616	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:221879616T>C	uc001hmy.1	-	3	1186	c.1004A>G	c.(1003-1005)CAG>CGG	p.Q335R	DUSP10_uc001hmx.1_5'UTR|DUSP10_uc001hmz.1_5'UTR	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	335					inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		CTGAGCATCCTGCTCATTGCC	0.582000													49	82					0	0	1	0	0	
LIN9	286826	broad.mit.edu	37	1	226483628	226483628	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:226483628C>T	uc001hqa.2	-	4	537	c.227G>A	c.(226-228)CGA>CAA	p.R76Q	LIN9_uc001hqb.2_Intron|LIN9_uc001hqc.2_Missense_Mutation_p.R8Q|LIN9_uc009xel.1_Intron	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	60	Sufficient for interaction with RB1.				cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		AAGTCGACTTCGTTTTGAATT	0.348000													18	30					0	0	1	0	0	
C1orf35	79169	broad.mit.edu	37	1	228290071	228290071	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:228290071G>A	uc001hrx.2	-	5	481	c.387C>T	c.(385-387)GGC>GGT	p.G129G	C1orf35_uc009xew.2_RNA	NM_024319	NP_077295	Q9BU76	MMTA2_HUMAN	hypothetical protein LOC79169	129											0		Prostate(94;0.0488)				TCGCCACGCGGCCCACGGAGC	0.672000													4	9					0	0	1	0	0	
MRPL55	128308	broad.mit.edu	37	1	228294543	228294543	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:228294543G>A	uc001hry.2	-	3	1049	c.305C>T	c.(304-306)TCG>TTG	p.S102L	MRPL55_uc001hrz.3_Missense_Mutation_p.S138L|MRPL55_uc009xex.2_Missense_Mutation_p.S102L|MRPL55_uc001hsa.3_Missense_Mutation_p.S102L|MRPL55_uc001hsb.3_Missense_Mutation_p.S102L|MRPL55_uc001hsc.3_Missense_Mutation_p.S102L|MRPL55_uc001hsd.3_Missense_Mutation_p.S102L|MRPL55_uc001hse.3_Missense_Mutation_p.S102L|MRPL55_uc001hsf.3_Missense_Mutation_p.S102L|MRPL55_uc001hsg.3_Missense_Mutation_p.S102L	NM_181465	NP_852130	Q7Z7F7	RM55_HUMAN	mitochondrial ribosomal protein L55 isoform a	102					translation	mitochondrial large ribosomal subunit	structural constituent of ribosome			central_nervous_system(1)	1		Prostate(94;0.0405)				CTCCTTCCTCGACTGGAGCTG	0.612000													29	35					0	0	1	0	0	
GJC2	57165	broad.mit.edu	37	1	228345732	228345732	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:228345732G>A	uc001hsk.2	+	2	448	c.273G>A	c.(271-273)TCG>TCA	p.S91S		NM_020435	NP_065168	Q5T442	CXG2_HUMAN	gap junction protein, gamma 2, 47kDa	91	Helical; (Potential).				cell death	connexon complex|integral to membrane					0		Prostate(94;0.0405)				CCACGCCCTCGGTCATGTACC	0.507000													8	5					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228509183	228509183	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:228509183G>A	uc009xez.1	+	55	14685	c.14641G>A	c.(14641-14643)GCT>ACT	p.A4881T	OBSCN_uc001hsn.2_Missense_Mutation_p.A4881T	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4881	IQ.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GAAGATCCAGGCTGCCTTTAA	0.602000													7	12					0	0	1	0	0	
NUP133	55746	broad.mit.edu	37	1	229635470	229635470	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:229635470C>T	uc001htn.2	-	5	701	c.609G>A	c.(607-609)TCG>TCA	p.S203S		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	203					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				TATCACCTCCCGAATCTACAA	0.433000													20	46					0	0	1	0	0	
NUP133	55746	broad.mit.edu	37	1	229635528	229635528	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:229635528A>G	uc001htn.2	-	5	643	c.551T>C	c.(550-552)ATC>ACC	p.I184T		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	184					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				CCAATAGCGGATAGATCCTTC	0.453000													15	37					0	0	1	0	0	
DISC1	27185	broad.mit.edu	37	1	231954073	231954073	+	Splice_Site	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:231954073A>G	uc001huz.2	+	9	1846	c.1793_splice	c.e9-2	p.G598_splice	TSNAX-DISC1_uc010pwg.1_Splice_Site_p.G587_splice|TSNAX-DISC1_uc010pwh.1_Splice_Site_p.G553_splice|TSNAX-DISC1_uc010pwi.1_Splice_Site_p.G553_splice|TSNAX-DISC1_uc010pwj.1_Splice_Site_p.G587_splice|TSNAX-DISC1_uc010pwk.1_Splice_Site_p.E553_splice|TSNAX-DISC1_uc010pwl.1_Splice_Site|DISC1_uc010pwr.1_Splice_Site_p.G598_splice|DISC1_uc010pws.1_Splice_Site_p.E564_splice|DISC1_uc010pwt.1_Splice_Site_p.R545_splice|DISC1_uc010pwu.1_Splice_Site_p.R195_splice|DISC1_uc010pwv.1_Splice_Site|DISC1_uc010pww.1_Splice_Site_p.G598_splice|DISC1_uc010pwx.1_Splice_Site|DISC1_uc010pwy.1_Splice_Site|DISC1_uc010pwz.1_Splice_Site|DISC1_uc010pxa.1_Splice_Site|DISC1_uc001huy.2_Splice_Site_p.G598_splice|DISC1_uc010pxb.1_Splice_Site_p.G598_splice|DISC1_uc010pxc.1_Intron|DISC1_uc010pxd.1_Splice_Site_p.G243_splice|DISC1_uc010pxe.1_Splice_Site_p.G598_splice|DISC1_uc009xfr.2_Splice_Site_p.G553_splice|DISC1_uc010pxf.1_Splice_Site_p.G598_splice|DISC1_uc010pxg.1_Intron|DISC1_uc010pxh.1_Splice_Site_p.G630_splice|DISC1_uc010pxi.1_Splice_Site|DISC1_uc010pxj.1_Splice_Site_p.G243_splice|DISC1_uc010pxk.1_Splice_Site|DISC1_uc010pxl.1_Splice_Site|DISC1_uc010pxm.1_Splice_Site_p.G476_splice|DISC1_uc010pxn.1_Splice_Site_p.G243_splice|DISC1_uc001hva.2_Splice_Site_p.G598_splice|DISC2_uc001hvd.2_RNA	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L						microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				AACGTGCTGTAGGAAACCATT	0.478000													19	62					0	0	1	0	0	
NID1	4811	broad.mit.edu	37	1	236189268	236189268	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:236189268C>T	uc001hxo.2	-	8	2014	c.1912G>A	c.(1912-1914)GTG>ATG	p.V638M	NID1_uc009xgd.2_Missense_Mutation_p.V638M	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	638	Nidogen G2 beta-barrel.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	AGGACGAACACGCTGTCCACC	0.597000													55	106					0	0	1	0	0	
MTR	4548	broad.mit.edu	37	1	237001790	237001790	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:237001790T>C	uc001hyi.3	+	15	1829	c.1406T>C	c.(1405-1407)GTC>GCC	p.V469A	MTR_uc010pxw.1_Missense_Mutation_p.V62A|MTR_uc010pxx.1_Missense_Mutation_p.V469A|MTR_uc010pxy.1_Missense_Mutation_p.V469A	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	469	Pterin-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	AAGTGCATTGTCAATAGCATT	0.443000													34	96					0	0	1	0	0	
RYR2	6262	broad.mit.edu	37	1	237919622	237919622	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:237919622A>G	uc001hyl.1	+	81	11300	c.11180A>G	c.(11179-11181)CAG>CGG	p.Q3727R	RYR2_uc010pya.1_Missense_Mutation_p.Q142R	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3727					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTTCTATACCAGCAAGCCCGA	0.468000													9	30					0	0	1	0	0	
FMN2	56776	broad.mit.edu	37	1	240255580	240255580	+	Silent	SNP	C	T	T	rs72042337		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:240255580C>T	uc010pyd.1	+	1	396	c.171C>T	c.(169-171)GGC>GGT	p.G57G	FMN2_uc010pye.1_Silent_p.G57G	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	57					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			gcggcggcggcggcggggAGT	0.547000													4	4					0	0	1	0	0	
SDCCAG8	10806	broad.mit.edu	37	1	243480061	243480061	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:243480061A>G	uc001hzw.2	+	9	1090	c.934A>G	c.(934-936)AGA>GGA	p.R312G	SDCCAG8_uc010pyk.1_Missense_Mutation_p.R167G|SDCCAG8_uc010pyl.1_Missense_Mutation_p.R124G|SDCCAG8_uc001hzx.2_Missense_Mutation_p.R124G	NM_006642	NP_006633	Q86SQ7	SDCG8_HUMAN	serologically defined colon cancer antigen 8	312	Sufficient for homodimerization (By similarity).				establishment of cell polarity|G2/M transition of mitotic cell cycle|tube formation	cell-cell junction|centriole|cytosol	protein binding				0	all_cancers(71;0.000545)|all_epithelial(71;0.000509)|all_lung(81;0.0821)|Ovarian(71;0.0919)|all_neural(11;0.101)|Breast(184;0.218)	all_cancers(173;0.00395)	all cancers(7;1.58e-07)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00392)	COAD - Colon adenocarcinoma(196;0.145)		TGACAGAGAAAGAGATGACTT	0.398000													14	37					0	0	1	0	0	
KIF26B	55083	broad.mit.edu	37	1	245850088	245850088	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:245850088C>T	uc001ibf.1	+	12	4243	c.3803C>T	c.(3802-3804)GCC>GTC	p.A1268V	KIF26B_uc001ibg.1_Missense_Mutation_p.A886V|KIF26B_uc001ibh.1_Missense_Mutation_p.A510V	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1268					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GATGAGAAGGCCCAGGACGCA	0.622000													13	15					0	0	1	0	0	
OR2G2	81470	broad.mit.edu	37	1	247752385	247752385	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:247752385G>A	uc010pyy.1	+	1	724	c.724G>A	c.(724-726)GGG>AGG	p.G242R		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GAAAGCATTCGGGACCTGCTT	0.403000													34	58					0	0	1	0	0	
OR14C36	127066	broad.mit.edu	37	1	248512486	248512486	+	Missense_Mutation	SNP	G	A	A	rs142744958		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:248512486G>A	uc010pzl.1	+	1	410	c.410G>A	c.(409-411)CGA>CAA	p.R137Q		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GTGAACTCTCGAATCTGCATC	0.512000													18	47					0	0	1	0	0	
DIP2C	22982	broad.mit.edu	37	10	387169	387169	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:387169C>T	uc001ifp.2	-	29	3644	c.3554G>A	c.(3553-3555)GGA>GAA	p.G1185E	DIP2C_uc009xhi.1_Missense_Mutation_p.G571E	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	1185						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		AAATCCCAGTCCACAGTAAGG	0.498000													18	56					0	0	1	0	0	
PRKCQ	5588	broad.mit.edu	37	10	6552975	6552975	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:6552975G>A	uc001ijj.1	-	3	375	c.300C>T	c.(298-300)AAC>AAT	p.N100N	PRKCQ_uc009xim.1_Silent_p.N100N|PRKCQ_uc001iji.1_Silent_p.N133N|PRKCQ_uc009xin.1_Silent_p.N64N|PRKCQ_uc010qax.1_Translation_Start_Site	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	100	C2.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						CTGTCTTCCCGTTGTTCTTCC	0.478000													33	82					0	0	1	0	0	
SFMBT2	57713	broad.mit.edu	37	10	7214079	7214079	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:7214079G>A	uc009xio.1	-	19	2284	c.2193C>T	c.(2191-2193)ACC>ACT	p.T731T	SFMBT2_uc001ijn.1_Silent_p.T731T|SFMBT2_uc010qay.1_Silent_p.T566T	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	731					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						CCTCACTGGCGGTGTCATCGT	0.687000													6	13					0	0	1	0	0	
SFMBT2	57713	broad.mit.edu	37	10	7326038	7326038	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:7326038A>G	uc009xio.1	-	6	691	c.600T>C	c.(598-600)CCT>CCC	p.P200P	SFMBT2_uc001ijn.1_Silent_p.P200P|SFMBT2_uc010qay.1_Silent_p.P200P	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	200	MBT 2.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						AGTACTGAAAAGGGTTCTGGG	0.438000													26	72					0	0	1	0	0	
TAF3	83860	broad.mit.edu	37	10	8056703	8056703	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:8056703C>T	uc010qbd.1	+	7	2779	c.2779C>T	c.(2779-2781)CGA>TGA	p.R927*		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	927					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						GAGGAAGCATCGAGCCCACTG	0.587000													3	6					0	0	1	0	0	
CELF2	10659	broad.mit.edu	37	10	11330379	11330379	+	Splice_Site	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:11330379A>G	uc001iki.3	+	9	913	c.821_splice	c.e9-2	p.G274_splice	CELF2_uc010qbi.1_Splice_Site_p.G46_splice|CELF2_uc010qbj.1_Splice_Site_p.G274_splice|CELF2_uc001ikk.2_Splice_Site_p.G281_splice|CELF2_uc001ikl.3_Splice_Site_p.G281_splice|CELF2_uc010qbk.1_Splice_Site|CELF2_uc010qbl.1_Splice_Site_p.G250_splice|CELF2_uc010qbm.1_Splice_Site_p.G46_splice|CELF2_uc001iko.3_Splice_Site_p.G250_splice|CELF2_uc001ikp.3_Splice_Site_p.G250_splice|CELF2_uc010qbn.1_Splice_Site_p.G258_splice|CELF2_uc010qbo.1_Splice_Site_p.G163_splice|CELF2_uc010qbp.1_Splice_Site_p.G46_splice	NM_001025077	NP_001020248	O95319	CELF2_HUMAN	CUG triplet repeat, RNA binding protein 2						mRNA processing|regulation of heart contraction	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding				0						TTCCCTCCACAGGCATGAATG	0.527000													13	35					0	0	1	0	0	
SEPHS1	22929	broad.mit.edu	37	10	13371727	13371727	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:13371727C>T	uc001imk.2	-	6	981	c.622G>A	c.(622-624)GCA>ACA	p.A208T	SEPHS1_uc001imh.2_Missense_Mutation_p.A132T|SEPHS1_uc010qbs.1_Missense_Mutation_p.A160T|SEPHS1_uc001imi.2_Missense_Mutation_p.A208T|SEPHS1_uc001imj.2_Missense_Mutation_p.A208T|SEPHS1_uc010qbt.1_Missense_Mutation_p.A141T|SEPHS1_uc009xje.2_Missense_Mutation_p.A208T	NM_012247	NP_036379	P49903	SPS1_HUMAN	selenophosphate synthetase 1	208					protein modification process		ATP binding|GTP binding|selenide, water dikinase activity			skin(1)	1						ACAGCCACTGCCACCTGTGTC	0.517000													3	5					0	0	1	0	0	
RSU1	6251	broad.mit.edu	37	10	16635393	16635393	+	Nonstop_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:16635393T>G	uc001iok.2	-	8	1136	c.834A>C	c.(832-834)TAA>TAC	p.*278Y	RSU1_uc001iol.2_Nonstop_Mutation_p.*278Y|RSU1_uc001iom.2_Nonstop_Mutation_p.*225Y	NM_152724	NP_689937	Q15404	RSU1_HUMAN	ras suppressor protein 1 isoform 2	278					cell junction assembly|signal transduction	cytosol	protein binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(1;7.54e-08)		AATCCCTTCCTTATCTGTTCT	0.507000													10	26					0	0	1	0	0	
BMI1	648	broad.mit.edu	37	10	22618055	22618055	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:22618055A>T	uc001irh.2	+	9	1288	c.649A>T	c.(649-651)AGG>TGG	p.R217W	BMI1_uc009xkg.2_Missense_Mutation_p.R360W	NM_005180	NP_005171	P35226	BMI1_HUMAN	BMI1 polycomb ring finger oncogene	217	Interaction with E4F1.				hemopoiesis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fibroblast proliferation|positive regulation of ubiquitin-protein ligase activity|segment specification|transcription, DNA-dependent	cytoplasm|nucleolus|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			ovary(1)|skin(1)	2						TACCTGGAGAAGGGTAAGTAG	0.289000													55	117					0	0	1	0	0	
ARMC3	219681	broad.mit.edu	37	10	23287215	23287215	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:23287215C>T	uc001irm.3	+	11	1397	c.1314C>T	c.(1312-1314)CAC>CAT	p.H438H	ARMC3_uc010qcv.1_Silent_p.H438H|ARMC3_uc010qcw.1_Silent_p.H175H	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	438	ARM 11.						binding				0						TACAGAATCACGACATCATGC	0.527000													4	18					0	0	1	0	0	
KIAA1217	56243	broad.mit.edu	37	10	24833341	24833341	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:24833341C>T	uc001iru.3	+	19	5545	c.5142C>T	c.(5140-5142)CCC>CCT	p.P1714P	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Silent_p.P1397P|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Silent_p.P550P	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1714					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CTCCCCGACCCTTGCTAGTTC	0.507000													21	42					0	0	1	0	0	
MKX	283078	broad.mit.edu	37	10	28023549	28023549	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:28023549C>T	uc001ity.3	-	5	899	c.674G>A	c.(673-675)CGT>CAT	p.R225H	MKX_uc001itx.3_Missense_Mutation_p.R225H	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	225					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATTAAGGTAACGGTTCAACAA	0.483000													37	73					0	0	1	0	0	
SVIL	6840	broad.mit.edu	37	10	29783879	29783879	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:29783879T>C	uc001iut.1	-	20	4558	c.3805A>G	c.(3805-3807)AGG>GGG	p.R1269G	SVIL_uc010qdw.1_Missense_Mutation_p.R183G|SVIL_uc001iuu.1_Missense_Mutation_p.R843G|SVIL_uc009xlc.2_Missense_Mutation_p.R61G	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1269					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				GTTTCCAGCCTGTCCAACTTC	0.448000													50	162					0	0	1	0	0	
KIAA1462	57608	broad.mit.edu	37	10	30315568	30315568	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:30315568G>T	uc001iux.2	-	2	3568	c.3509C>A	c.(3508-3510)CCT>CAT	p.P1170H	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.P1032H|KIAA1462_uc009xle.1_Missense_Mutation_p.P1170H	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1170										ovary(4)	4						AAAAGCCTGAGGAGCCCGCCT	0.597000													36	86					6.97489e-18	7.50161e-18	1	1	0	
ZEB1	6935	broad.mit.edu	37	10	31816061	31816061	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:31816061A>G	uc001ivs.3	+	9	3307	c.3244A>G	c.(3244-3246)AAT>GAT	p.N1082D	ZEB1_uc001ivr.3_Missense_Mutation_p.N864D|ZEB1_uc010qee.1_Missense_Mutation_p.N864D|ZEB1_uc010qef.1_Missense_Mutation_p.N864D|ZEB1_uc001ivt.3_Missense_Mutation_p.N864D|ZEB1_uc001ivu.3_Missense_Mutation_p.N1083D|ZEB1_uc001ivv.3_Missense_Mutation_p.N1062D|ZEB1_uc010qeh.1_Missense_Mutation_p.N1015D|ZEB1_uc009xlp.2_Missense_Mutation_p.N1066D	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	1082	Glu-rich (acidic).				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				agaggcagagaatgagggaga	0.194000													3	12					0	0	1	0	0	
ZNF37A	7587	broad.mit.edu	37	10	38407491	38407491	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:38407491A>T	uc001izk.2	+	8	2231	c.1412A>T	c.(1411-1413)GAA>GTA	p.E471V	ZNF37A_uc001izl.2_Missense_Mutation_p.E471V|ZNF37A_uc001izm.2_Missense_Mutation_p.E471V	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	471	C2H2-type 10.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						GGATGTAATGAATGTGGGAAA	0.398000													30	36					0	0	1	0	0	
BMS1	9790	broad.mit.edu	37	10	43318712	43318712	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:43318712C>T	uc001jaj.2	+	20	3637	c.3279C>T	c.(3277-3279)AGC>AGT	p.S1093S		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1093					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						TGCTGATGAGCGGTGAGTGTC	0.517000													19	50					0	0	1	0	0	
RET	5979	broad.mit.edu	37	10	43600465	43600465	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:43600465C>T	uc001jal.2	+	4	881	c.691C>T	c.(691-693)CGC>TGC	p.R231C	RET_uc001jak.1_Missense_Mutation_p.R231C|RET_uc010qez.1_5'UTR	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	231	Cadherin.|Extracellular (Potential).		R -> H (in HSCR1; familial form).		homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	GGCCCTGGACCGCGAGCAGCG	0.711000		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				2	2					0	0	1	0	0	
ALOX5	240	broad.mit.edu	37	10	45939255	45939255	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:45939255C>T	uc001jce.2	+	12	1752	c.1653C>T	c.(1651-1653)CAC>CAT	p.H551H	ALOX5_uc009xmt.2_Silent_p.H519H|ALOX5_uc010qfg.1_Silent_p.H551H	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	551	Lipoxygenase.	Iron; catalytic.		H->N,A: No activity.	hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CCGCCCAGCACGCCGCGGTCA	0.706000													3	4					0	0	1	0	0	
ALOX5	240	broad.mit.edu	37	10	45941110	45941110	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:45941110G>A	uc001jce.2	+	14	2099	c.2000G>A	c.(1999-2001)CGG>CAG	p.R667Q	ALOX5_uc009xmt.2_Missense_Mutation_p.R635Q|ALOX5_uc010qfg.1_Missense_Mutation_p.R610Q	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	667	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	TCCCCAGACCGGATTCCGAAC	0.587000													26	68					0	0	1	0	0	
SYT15	83849	broad.mit.edu	37	10	46967496	46967496	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:46967496C>T	uc001jea.2	-	4	734	c.581G>A	c.(580-582)CGG>CAG	p.R194Q	SYT15_uc001jdz.2_Missense_Mutation_p.R194Q|SYT15_uc001jeb.2_Missense_Mutation_p.R72Q|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	194	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						GAGGAAGCGCCGCTCATCGGG	0.607000													12	72					0	0	1	0	0	
LRRC18	474354	broad.mit.edu	37	10	50122031	50122031	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:50122031A>C	uc001jhd.2	-	1	250	c.170T>G	c.(169-171)CTT>CGT	p.L57R	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Missense_Mutation_p.L57R	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	57	LRR 2.					cytoplasm				ovary(1)|pancreas(1)	2						ATTCCGGCTAAGGTCCAGCTC	0.507000													15	36					0	0	1	0	0	
AGAP7	653268	broad.mit.edu	37	10	51464874	51464874	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:51464874G>A	uc001jio.2	-	7	1708	c.1582C>T	c.(1582-1584)CGG>TGG	p.R528W	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	528	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GGTTTTGTCCGCCCCTGGCTG	0.532000													67	313					0	0	1	0	0	
PCDH15	65217	broad.mit.edu	37	10	55591248	55591248	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:55591248C>T	uc001jju.1	-	30	4424	c.4029G>A	c.(4027-4029)CCG>CCA	p.P1343P	PCDH15_uc010qhq.1_Silent_p.P1348P|PCDH15_uc010qhr.1_Silent_p.P1343P|PCDH15_uc010qhs.1_Silent_p.P1355P|PCDH15_uc010qht.1_Silent_p.P1350P|PCDH15_uc010qhu.1_Silent_p.P1343P|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.P1343P|PCDH15_uc010qhw.1_Silent_p.P1306P|PCDH15_uc010qhx.1_Silent_p.P1272P|PCDH15_uc010qhy.1_Silent_p.P1348P|PCDH15_uc010qhz.1_Silent_p.P1343P|PCDH15_uc010qia.1_Silent_p.P1321P|PCDH15_uc010qib.1_Silent_p.P1321P	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1343	Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CCCCATAATACGGCTGAAAGT	0.398000										HNSCC(58;0.16)			17	56					0	0	1	0	0	
RHOBTB1	9886	broad.mit.edu	37	10	62648943	62648943	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:62648943C>T	uc001jli.2	-	7	921	c.483G>A	c.(481-483)AGG>AGA	p.R161R	RHOBTB1_uc001jlh.2_Silent_p.R161R|RHOBTB1_uc001jlj.2_Silent_p.R161R|RHOBTB1_uc001jlk.2_Silent_p.R161R|RHOBTB1_uc009xpe.1_Silent_p.R99R|RHOBTB1_uc001jll.2_5'UTR	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	161	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TCTTTATGGGCCTGAAATAGA	0.388000													21	46					0	0	1	0	0	
ARID5B	84159	broad.mit.edu	37	10	63700041	63700041	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:63700041G>A	uc001jlt.1	+	3	402	c.376G>A	c.(376-378)GCT>ACT	p.A126T	ARID5B_uc010qil.1_Missense_Mutation_p.A126T	NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	126					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					TGGCTTCCACGCTGGACCAGT	0.478000													23	46					0	0	1	0	0	
CTNNA3	29119	broad.mit.edu	37	10	68940122	68940122	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:68940122C>T	uc009xpn.1	-	7	1123	c.1000G>A	c.(1000-1002)GCC>ACC	p.A334T	CTNNA3_uc001jmw.2_Missense_Mutation_p.A334T|CTNNA3_uc001jmx.3_Missense_Mutation_p.A334T|CTNNA3_uc009xpo.1_Missense_Mutation_p.A194T|CTNNA3_uc001jna.2_Missense_Mutation_p.A346T	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	334	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TGGCGAATGGCGTTGCATTCT	0.517000													15	55					0	0	1	0	0	
DDX21	9188	broad.mit.edu	37	10	70723160	70723160	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:70723160G>A	uc001jov.1	+	4	811	c.721G>A	c.(721-723)GCC>ACC	p.A241T	DDX21_uc001jow.1_Missense_Mutation_p.A173T	NM_004728	NP_004719	Q9NR30	DDX21_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	241	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)	3						ATTCTCCTTTGCCATCCCTTT	0.473000													25	64					0	0	1	0	0	
HK1	3098	broad.mit.edu	37	10	71144653	71144653	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:71144653G>T	uc001jpl.3	+	12	1922	c.1821G>T	c.(1819-1821)CAG>CAT	p.Q607H	HK1_uc001jpg.3_Missense_Mutation_p.Q595H|HK1_uc001jph.3_Missense_Mutation_p.Q611H|HK1_uc001jpi.3_Missense_Mutation_p.Q611H|HK1_uc001jpj.3_Missense_Mutation_p.Q642H|HK1_uc001jpk.3_Missense_Mutation_p.Q606H|HK1_uc009xqd.2_Missense_Mutation_p.Q485H	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	607	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						TTCCCTGCCAGCAGACGAGTC	0.572000													50	84					1.00776e-21	1.09117e-21	1	1	0	
SLC29A3	55315	broad.mit.edu	37	10	73115921	73115921	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:73115921G>A	uc001jrr.3	+	5	751	c.694G>A	c.(694-696)GCC>ACC	p.A232T	SLC29A3_uc001jrs.3_Missense_Mutation_p.A232T|SLC29A3_uc010qjq.1_Missense_Mutation_p.A86T|SLC29A3_uc001jrt.3_Missense_Mutation_p.A26T|SLC29A3_uc001jru.3_Missense_Mutation_p.A44T	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	232	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						CAGCGCCCTGGCCTTCTTCCT	0.612000													11	45					0	0	1	0	0	
P4HA1	5033	broad.mit.edu	37	10	74813270	74813270	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:74813270T>C	uc010qka.1	-	7	876	c.542A>G	c.(541-543)TAC>TGC	p.Y181C	P4HA1_uc001jtg.2_Missense_Mutation_p.Y181C|P4HA1_uc001jth.2_Missense_Mutation_p.Y181C|P4HA1_uc010qkb.1_Missense_Mutation_p.Y181C|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	181						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TTCCGTATGGTAATAATCTGC	0.413000													36	83					0	0	1	0	0	
ADK	132	broad.mit.edu	37	10	76360209	76360209	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:76360209G>A	uc001jwi.2	+	9	907	c.835G>A	c.(835-837)GTG>ATG	p.V279M	ADK_uc010qlb.1_Missense_Mutation_p.V222M|ADK_uc001jwj.2_Missense_Mutation_p.V262M|ADK_uc010qlc.1_Missense_Mutation_p.V244M|ADK_uc001jwl.2_Missense_Mutation_p.V49M	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	279					purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	GCAGCGAATCGTGATCTTCAC	0.368000													8	21					0	0	1	0	0	
KCNMA1	3778	broad.mit.edu	37	10	78647136	78647136	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:78647136C>T	uc001jxn.2	-	28	3776	c.3599G>A	c.(3598-3600)AGC>AAC	p.S1200N	KCNMA1_uc001jxj.2_Missense_Mutation_p.S1146N|KCNMA1_uc001jxk.1_Missense_Mutation_p.S818N|KCNMA1_uc009xrt.1_Missense_Mutation_p.S991N|KCNMA1_uc001jxl.1_Missense_Mutation_p.S825N|KCNMA1_uc001jxo.2_Missense_Mutation_p.S1183N|KCNMA1_uc001jxm.2_Missense_Mutation_p.S1142N|KCNMA1_uc001jxq.2_Missense_Mutation_p.S1172N|uc001jxp.2_5'Flank	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1200	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	GCTCTTCTTGCTGGAGGACTG	0.587000													7	80					0	0	1	0	0	
POLR3A	11128	broad.mit.edu	37	10	79750815	79750815	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:79750815C>T	uc001jzn.2	-	21	2992	c.2898G>A	c.(2896-2898)CTG>CTA	p.L966L		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	966					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			AGCTCACCTGCAGGAAGCTGT	0.542000													3	23					0	0	1	0	0	
ZMIZ1	57178	broad.mit.edu	37	10	81052026	81052026	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:81052026A>G	uc001kaf.2	+	11	1442	c.870A>G	c.(868-870)GCA>GCG	p.A290A	ZMIZ1_uc001kag.2_Silent_p.A166A|ZMIZ1_uc001kah.1_Silent_p.A166A	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	290	Ala-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			cagtggcagcagcagcagcCA	0.493000													27	54					0	0	1	0	0	
GHITM	27069	broad.mit.edu	37	10	85904668	85904668	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:85904668A>G	uc001kcs.1	+	5	583	c.379A>G	c.(379-381)ACC>GCC	p.T127A	GHITM_uc010qma.1_Intron|GHITM_uc010qmb.1_Missense_Mutation_p.T57A	NM_014394	NP_055209	Q9H3K2	GHITM_HUMAN	growth hormone inducible transmembrane protein	127	Helical; (Potential).				apoptosis	integral to membrane|mitochondrial inner membrane					0						AATTCATTCCACCTATATGTA	0.338000													24	58					0	0	1	0	0	
WAPAL	23063	broad.mit.edu	37	10	88197332	88197332	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:88197332A>G	uc001kdo.2	-	19	3983	c.3541T>C	c.(3541-3543)TCT>CCT	p.S1181P	WAPAL_uc009xsv.2_Missense_Mutation_p.S440P|WAPAL_uc001kdn.2_Missense_Mutation_p.S1218P|WAPAL_uc009xsw.2_Missense_Mutation_p.S1175P	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	1181					cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						ATCACTCTAGAGATAGATTTC	0.383000													13	29					0	0	1	0	0	
MMRN2	79812	broad.mit.edu	37	10	88703315	88703315	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:88703315A>C	uc001kea.2	-	6	1353	c.1226T>G	c.(1225-1227)GTG>GGG	p.V409G	MMRN2_uc010qmn.1_Missense_Mutation_p.V52G|MMRN2_uc009xtb.2_Missense_Mutation_p.V366G	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	409	Potential.					extracellular space				large_intestine(1)	1						GATCTCATCCACGTGCCGGGT	0.602000													20	56					0	0	1	0	0	
RPP30	10556	broad.mit.edu	37	10	92656100	92656100	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:92656100C>T	uc009xtx.2	+	10	683	c.648C>T	c.(646-648)GAC>GAT	p.D216D	RPP30_uc001khd.2_Silent_p.D216D	NM_006413	NP_006404	P78346	RPP30_HUMAN	ribonuclease P/MRP 30kDa subunit isoform b	216					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0						CTGAAAGTGACGCCAAGGCTG	0.488000													12	42					0	0	1	0	0	
CYP26C1	340665	broad.mit.edu	37	10	94828127	94828127	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:94828127G>A	uc010qns.1	+	6	1242	c.1242G>A	c.(1240-1242)ACG>ACA	p.T414T	CYP26C1_uc009xud.2_RNA	NM_183374	NP_899230	Q6V0L0	CP26C_HUMAN	cytochrome P450, family 26, subfamily C,	414					anterior/posterior pattern formation|central nervous system development|negative regulation of retinoic acid receptor signaling pathway|neural crest cell development|organelle fusion|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			central_nervous_system(1)	1		Colorectal(252;0.122)				TCCGGGACACGCACGAGACGG	0.667000													6	39					0	0	1	0	0	
MMS19	64210	broad.mit.edu	37	10	99237113	99237113	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:99237113G>A	uc001kns.3	-	6	709	c.484C>T	c.(484-486)CGG>TGG	p.R162W	MMS19_uc009xvt.2_Missense_Mutation_p.R4W|MMS19_uc001knr.2_Missense_Mutation_p.R4W|MMS19_uc010qox.1_Missense_Mutation_p.R183W|MMS19_uc001knt.2_Missense_Mutation_p.R162W|MMS19_uc001knu.1_RNA	NM_022362	NP_071757	Q96T76	MMS19_HUMAN	MMS19 nucleotide excision repair homolog	162					chromosome segregation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|response to hormone stimulus|transcription, DNA-dependent|two-component signal transduction system (phosphorelay)	cytoplasm|holo TFIIH complex|MMXD complex	estrogen receptor binding|protein binding, bridging|receptor signaling complex scaffold activity|transcription coactivator activity				0		Colorectal(252;0.0846)		Epithelial(162;3.33e-10)|all cancers(201;2.74e-08)		CCTTCTTCCCGGGTTCGCATA	0.448000								Direct_reversal_of_damage|NER					17	42					0	0	1	0	0	
GOLGA7B	401647	broad.mit.edu	37	10	99623729	99623729	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:99623729G>A	uc001kos.2	+	3	246	c.181G>A	c.(181-183)GGA>AGA	p.G61R		NM_001010917	NP_001010917	Q2TAP0	GOG7B_HUMAN	golgi autoantigen, golgin subfamily a, 7B	61						Golgi membrane					0						GACCCTCAACGGATTTTACGC	0.587000													22	34					0	0	1	0	0	
CNNM1	26507	broad.mit.edu	37	10	101122095	101122095	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:101122095C>G	uc001kpp.3	+	4	2259	c.1970C>G	c.(1969-1971)CCG>CGG	p.P657R	CNNM1_uc009xwe.2_Missense_Mutation_p.P657R|CNNM1_uc010qpi.1_Missense_Mutation_p.P657R|CNNM1_uc009xwf.2_Missense_Mutation_p.P657R|CNNM1_uc009xwg.2_Missense_Mutation_p.P57R	NM_020348	NP_065081	Q9NRU3	CNNM1_HUMAN	cyclin M1	657					ion transport	integral to membrane|plasma membrane					0		Colorectal(252;0.234)		Epithelial(162;6.82e-10)|all cancers(201;5.62e-08)		AAGAAGGCCCCGGAACACTAC	0.527000													16	27					0	0	1	0	0	
CPN1	1369	broad.mit.edu	37	10	101823471	101823471	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:101823471G>A	uc001kql.2	-	5	1031	c.771C>T	c.(769-771)GTC>GTT	p.V257V		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	257	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		CATAGGAGTAGACCTTGGCCA	0.493000													17	62					0	0	1	0	0	
PPRC1	23082	broad.mit.edu	37	10	103901063	103901063	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:103901063G>A	uc001kum.2	+	5	2837	c.2798G>A	c.(2797-2799)GGC>GAC	p.G933D	PPRC1_uc001kun.2_Missense_Mutation_p.G813D|PPRC1_uc010qqj.1_Missense_Mutation_p.G933D|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	933	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		TCCCCTTCTGGCTATCCTTGC	0.587000													28	35					0	0	1	0	0	
GBF1	8729	broad.mit.edu	37	10	104140951	104140951	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:104140951C>T	uc001kux.1	+	39	5478	c.5238C>T	c.(5236-5238)GGC>GGT	p.G1746G	GBF1_uc001kuy.1_Silent_p.G1742G|GBF1_uc001kuz.1_Silent_p.G1743G	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1746					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CCGCTGCTGGCGACACTAGGA	0.602000													15	45					0	0	1	0	0	
SUFU	51684	broad.mit.edu	37	10	104389902	104389902	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:104389902C>T	uc001kvy.1	+	12	1591	c.1445C>T	c.(1444-1446)CCG>CTG	p.P482L	SUFU_uc009xxe.1_RNA|SUFU_uc009xxf.1_RNA	NM_016169	NP_057253	Q9UMX1	SUFU_HUMAN	suppressor of fused	482					negative regulation of transcription from RNA polymerase II promoter|proteolysis|skeletal system development	cytoplasm|nucleus	identical protein binding|protein binding|signal transducer activity|transcription corepressor activity|transcription factor binding			central_nervous_system(4)|skin(2)|breast(1)	7		Colorectal(252;0.207)		Epithelial(162;1.36e-08)|all cancers(201;3.81e-07)|BRCA - Breast invasive adenocarcinoma(275;0.242)		TTCGACAGTCCGCTACACTAG	0.567000			D|F|S		medulloblastoma	medulloblastoma			Medulloblastoma_associated_with_Germline_SUFU_Mutation				33	63					0	0	1	0	0	
PDCD11	22984	broad.mit.edu	37	10	105172904	105172904	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:105172904G>A	uc001kwy.1	+	9	1097	c.1010G>A	c.(1009-1011)CGA>CAA	p.R337Q		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	337	S1 motif 3.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		GTCCATCCTCGAACCAGAGTT	0.597000													12	54					0	0	1	0	0	
SLK	9748	broad.mit.edu	37	10	105758876	105758876	+	Splice_Site	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:105758876G>T	uc001kxo.1	+	6	622	c.588_splice	c.e6-1	p.W196_splice	SLK_uc001kxp.1_Splice_Site_p.W196_splice	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2						apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TGTCTTCATAGGATGGCTCCT	0.343000													14	51					6.31663e-08	6.54262e-08	1	1	0	
SLK	9748	broad.mit.edu	37	10	105765439	105765439	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:105765439C>T	uc001kxo.1	+	10	2504	c.2470C>T	c.(2470-2472)CGG>TGG	p.R824W	SLK_uc001kxp.1_Missense_Mutation_p.R824W	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	824					apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TGAAGAATTGCGGTTTCTTAG	0.333000													24	60					0	0	1	0	0	
COL17A1	1308	broad.mit.edu	37	10	105801069	105801069	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:105801069C>T	uc001kxr.2	-	38	2808	c.2639G>A	c.(2638-2640)GGC>GAC	p.G880D		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	880	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		ACCTGGTGGGCCTCGGGGTCC	0.647000													18	60					0	0	1	0	0	
ITPRIP	85450	broad.mit.edu	37	10	106074327	106074327	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:106074327G>A	uc001kye.2	-	2	1556	c.1483C>T	c.(1483-1485)CTC>TTC	p.L495F	ITPRIP_uc001kyf.2_Missense_Mutation_p.L495F|ITPRIP_uc001kyg.2_Missense_Mutation_p.L495F	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	495						plasma membrane					0						TCGGCCCTGAGCACGGCCTCA	0.592000													23	58					0	0	1	0	0	
CASP7	840	broad.mit.edu	37	10	115481532	115481532	+	Nonsense_Mutation	SNP	A	T	T	rs72431166		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:115481532A>T	uc001lan.2	+	4	544	c.370A>T	c.(370-372)AAA>TAA	p.K124*	CASP7_uc001lam.2_Nonsense_Mutation_p.K124*|CASP7_uc001lao.2_Nonsense_Mutation_p.K157*|CASP7_uc001lap.2_Nonsense_Mutation_p.K124*|CASP7_uc001laq.2_Nonsense_Mutation_p.K124*|CASP7_uc010qsa.1_Nonsense_Mutation_p.K209*|CASP7_uc010qsb.1_Nonsense_Mutation_p.K99*	NM_033339	NP_203125	P55210	CASP7_HUMAN	caspase 7 isoform alpha	124					activation of caspase activity by cytochrome c|cellular component disassembly involved in apoptosis|induction of apoptosis by intracellular signals|proteolysis	cytosol|endoplasmic reticulum membrane|mitochondrial membrane|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0946)|Breast(234;0.188)		Epithelial(162;0.012)|all cancers(201;0.014)		AGATCTGCTTAAAAAAGGTGA	0.269000													24	75					0	0	1	0	0	
ADRB1	153	broad.mit.edu	37	10	115804937	115804937	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:115804937T>A	uc001lba.2	+	1	1132	c.1046T>A	c.(1045-1047)TTC>TAC	p.F349Y		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	349	Helical; Name=6; (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	GTGAAGGCCTTCCACCGCGAG	0.642000													7	12					0	0	1	0	0	
VWA2	340706	broad.mit.edu	37	10	116045994	116045994	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:116045994C>T	uc001lbl.1	+	11	1615	c.1294C>T	c.(1294-1296)CGT>TGT	p.R432C	VWA2_uc001lbk.1_Missense_Mutation_p.R432C|VWA2_uc009xyf.1_Missense_Mutation_p.R128C	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	432	VWFA 2.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GGCGGCAGAGCGTGGCTTCGG	0.662000													11	52					0	0	1	0	0	
C10orf119	79892	broad.mit.edu	37	10	121595140	121595140	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:121595140G>A	uc001ler.2	-	14	1923	c.1625C>T	c.(1624-1626)GCG>GTG	p.A542V	C10orf119_uc001leq.1_Missense_Mutation_p.A367V|C10orf119_uc001les.1_Missense_Mutation_p.A367V	NM_024834	NP_079110	Q9BTE3	MCMBP_HUMAN	chromosome 10 open reading frame 119	542					cell division|DNA-dependent DNA replication|mitosis|S phase of mitotic cell cycle|sister chromatid cohesion	nucleus	chromatin binding				0		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.0044)		AGGCAGCACCGCTGAGAGAAG	0.438000													28	46					0	0	1	0	0	
C10orf120	399814	broad.mit.edu	37	10	124457678	124457678	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:124457678T>C	uc001lgn.2	-	3	611	c.579A>G	c.(577-579)TCA>TCG	p.S193S		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	193										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				CAGACAGAAATGAGGAGCGTG	0.478000													14	55					0	0	1	0	0	
ACADSB	36	broad.mit.edu	37	10	124797336	124797336	+	Silent	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:124797336A>C	uc001lhb.2	+	3	393	c.276A>C	c.(274-276)TCA>TCC	p.S92S	ACADSB_uc010qub.1_Intron	NM_001609	NP_001600	P45954	ACDSB_HUMAN	acyl-Coenzyme A dehydrogenase, short/branched	92					branched chain family amino acid catabolic process|fatty acid metabolic process	mitochondrial matrix	flavin adenine dinucleotide binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.0811)|COAD - Colon adenocarcinoma(40;0.0835)	L-Isoleucine(DB00167)	TGGAGAAATCAGTAATACAAG	0.313000													27	82					0	0	1	0	0	
DHX32	55760	broad.mit.edu	37	10	127548546	127548546	+	Splice_Site	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:127548546T>C	uc001ljf.1	-	3	968	c.477_splice	c.e3-1	p.R159_splice	DHX32_uc001ljg.1_Splice_Site_p.R159_splice|DHX32_uc009yam.1_Splice_Site	NM_018180	NP_060650	Q7L7V1	DHX32_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32							mitochondrion|nucleus	ATP binding|helicase activity			breast(2)|ovary(1)|lung(1)	4		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)				GTACAATACCTATAAAGAAGA	0.313000													13	21					0	0	1	0	0	
FOXI2	399823	broad.mit.edu	37	10	129536879	129536879	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:129536879G>A	uc009yas.2	+	2	607	c.607G>A	c.(607-609)GCG>ACG	p.A203T	uc009yar.1_5'Flank	NM_207426	NP_997309	Q6ZQN5	FOXI2_HUMAN	forkhead box I2	203					epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_epithelial(44;0.0021)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)				TGAAGCCAGCGCGGCCGTGCG	0.662000													5	10					0	0	1	0	0	
EBF3	253738	broad.mit.edu	37	10	131761751	131761751	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:131761751C>T	uc001lki.1	-	2	230	c.171G>A	c.(169-171)CAG>CAA	p.Q57Q	EBF3_uc010qur.1_Silent_p.Q43Q	NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	57					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		TGGAAGGCGGCTGCTTCTCGA	0.537000													12	30					0	0	1	0	0	
NKX6-2	84504	broad.mit.edu	37	10	134598879	134598879	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:134598879C>T	uc001llr.2	-	2	569	c.484G>A	c.(484-486)GCG>ACG	p.A162T		NM_177400	NP_796374	Q9C056	NKX62_HUMAN	NK6 transcription factor related, locus 2	162	Homeobox.					nucleus	sequence-specific DNA binding transcription factor activity				0		all_cancers(35;2.79e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0584)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;4.06e-05)|Epithelial(32;5.53e-05)|all cancers(32;5.99e-05)		TTCTCCAGCGCGAAGATCTGC	0.677000													7	8					0	0	1	0	0	
ANO9	338440	broad.mit.edu	37	11	431745	431745	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:431745G>A	uc001lpi.2	-	7	573	c.488C>T	c.(487-489)ACG>ATG	p.T163M	ANO9_uc001lph.2_5'Flank|ANO9_uc010qvv.1_Missense_Mutation_p.T19M	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	163	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CCGCGCCCACGTCTTCTTCAG	0.672000													12	19					0	0	1	0	0	
RNH1	6050	broad.mit.edu	37	11	499909	499909	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:499909G>A	uc001lpk.1	-	3	1771	c.363C>T	c.(361-363)AGC>AGT	p.S121S	RNH1_uc001lpl.1_Silent_p.S121S|RNH1_uc001lpm.1_Silent_p.S121S|RNH1_uc001lpn.1_Silent_p.S121S|RNH1_uc001lpo.1_Silent_p.S121S|RNH1_uc009ybw.1_RNA|RNH1_uc001lpp.1_Silent_p.S121S|RNH1_uc001lpt.1_5'UTR|RNH1_uc001lpq.1_Silent_p.S121S|RNH1_uc001lpr.1_Silent_p.S121S|RNH1_uc001lps.1_Silent_p.S121S|RNH1_uc009ybx.1_3'UTR	NM_203389	NP_976323	P13489	RINI_HUMAN	ribonuclease/angiogenin inhibitor	121	LRR 4.				mRNA catabolic process|regulation of angiogenesis	angiogenin-PRI complex|cytoplasm	protein binding|ribonuclease inhibitor activity				0		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.26e-26)|Epithelial(43;1.34e-25)|OV - Ovarian serous cystadenocarcinoma(40;5.31e-20)|BRCA - Breast invasive adenocarcinoma(625;8.01e-05)|Lung(200;0.0378)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGAGGTTGTCGCTGAGGTGCA	0.662000													7	25					0	0	1	0	0	
CEND1	51286	broad.mit.edu	37	11	788286	788286	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:788286A>G	uc001lrh.1	-	2	470	c.291T>C	c.(289-291)CCT>CCC	p.P97P		NM_016564	NP_057648	Q8N111	CEND_HUMAN	cell cycle exit and neuronal differentiation 1	97	Cytoplasmic (Potential).					integral to membrane					0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;6.27e-26)|Epithelial(43;4.84e-25)|OV - Ovarian serous cystadenocarcinoma(40;2.72e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCCCGTCCCCAGGACCCTTGG	0.692000													6	16					0	0	1	0	0	
AP2A2	161	broad.mit.edu	37	11	972112	972112	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:972112C>T	uc001lss.2	+	4	511	c.330C>T	c.(328-330)CGC>CGT	p.R110R	AP2A2_uc001lst.1_Silent_p.R110R|AP2A2_uc009yco.1_RNA|AP2A2_uc001lsu.1_5'UTR	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	110					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		AGCTGATCCGCCTGATCAACA	0.557000													6	16					0	0	1	0	0	
MUC6	4588	broad.mit.edu	37	11	1019473	1019473	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:1019473C>T	uc001lsw.2	-	30	3883	c.3832G>A	c.(3832-3834)GTC>ATC	p.V1278I		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1278	Pro-rich.|Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGTGGGGTGACGGCCGTGGTT	0.642000													25	60					0	0	1	0	0	
MUC6	4588	broad.mit.edu	37	11	1023607	1023607	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:1023607C>T	uc001lsw.2	-	26	3479	c.3428G>A	c.(3427-3429)GGC>GAC	p.G1143D		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1143					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTGGTACTCGCCATGGCCGTC	0.647000													6	16					0	0	1	0	0	
BRSK2	9024	broad.mit.edu	37	11	1475826	1475826	+	Silent	SNP	C	T	T	rs147039698	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:1475826C>T	uc001lti.2	+	16	2042	c.1656C>T	c.(1654-1656)CAC>CAT	p.H552H	BRSK2_uc009ycv.1_Silent_p.H574H|BRSK2_uc001lth.1_Silent_p.H552H|BRSK2_uc001ltj.2_Silent_p.H552H|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Silent_p.H552H|BRSK2_uc001ltm.2_Silent_p.H598H|BRSK2_uc001ltn.2_RNA|BRSK2_uc010qwx.1_RNA|BRSK2_uc009ycw.2_Silent_p.H48H	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	552					establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		ACATCGTGCACGCCTTCCTGT	0.612000													15	28					0	0	1	0	0	
RHOG	391	broad.mit.edu	37	11	3849264	3849264	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:3849264G>A	uc001lyu.2	-	2	263	c.105C>T	c.(103-105)ACC>ACT	p.T35T		NM_001665	NP_001656	P84095	RHOG_HUMAN	ras homolog gene family, member G precursor	35	Effector region (Potential).				actin cytoskeleton organization|activation of Rac GTPase activity|axon guidance|cell chemotaxis|platelet activation|positive regulation of cell proliferation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of transcription, DNA-dependent|Rac protein signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|protein binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0349)|LUSC - Lung squamous cell carcinoma(625;0.194)		TGTCGAACACGGTGGGGATGT	0.587000													11	27					0	0	1	0	0	
TRIM68	55128	broad.mit.edu	37	11	4621595	4621595	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:4621595G>A	uc001lzf.1	-	7	1607	c.1369C>T	c.(1369-1371)CGC>TGC	p.R457C	TRIM68_uc001lzg.1_Missense_Mutation_p.R234C|TRIM68_uc010qyj.1_RNA	NM_018073	NP_060543	Q6AZZ1	TRI68_HUMAN	ring finger protein 137	457	B30.2/SPRY.				protein autoubiquitination|regulation of androgen receptor signaling pathway	Golgi apparatus|nucleolus|perinuclear region of cytoplasm	androgen receptor binding|histone acetyltransferase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;9.49e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		GGCAGGAGGCGCCCAGGGAAG	0.522000													16	32					0	0	1	0	0	
OR51S1	119692	broad.mit.edu	37	11	4869948	4869948	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:4869948T>C	uc010qyo.1	-	1	491	c.491A>G	c.(490-492)CAT>CGT	p.H164R		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	164	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGGGCAGATGGAGACCCAG	0.557000													30	72					0	0	1	0	0	
OR51T1	401665	broad.mit.edu	37	11	4903424	4903424	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:4903424T>G	uc010qyp.1	+	1	376	c.376T>G	c.(376-378)TGC>GGC	p.C126G		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTTTAAAGCTTGCTTCATTCA	0.507000													29	57					0	0	1	0	0	
OR51M1	390059	broad.mit.edu	37	11	5411061	5411061	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:5411061T>A	uc010qzc.1	+	1	433	c.433T>A	c.(433-435)TCG>ACG	p.S145T	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	145						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTGAGGTATTCGGTCATTAT	0.527000													63	140					0	0	1	0	0	
UBQLNL	143630	broad.mit.edu	37	11	5537636	5537636	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:5537636G>T	uc001maz.3	-	1	321	c.36C>A	c.(34-36)TCC>TCA	p.S12S	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	12										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		ATCCACTCTGGGACATCCTGG	0.532000													20	39					3.51602e-12	3.72036e-12	1	1	0	
CNGA4	1262	broad.mit.edu	37	11	6265379	6265379	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:6265379C>T	uc001mco.2	+	6	1575	c.1468C>T	c.(1468-1470)CAG>TAG	p.Q490*	CNGA4_uc010raa.1_3'UTR|CNGA4_uc001mcn.2_3'UTR	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	490	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATCGCCCTGCAGGAGGCCAC	0.562000													14	44					0	0	1	0	0	
TRIM3	10612	broad.mit.edu	37	11	6471805	6471805	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:6471805C>T	uc001mdh.2	-	11	2304	c.1917G>A	c.(1915-1917)ACG>ACA	p.T639T	TRIM3_uc001mdi.2_Silent_p.T639T|TRIM3_uc010raj.1_Silent_p.T520T|TRIM3_uc009yfd.2_Silent_p.T639T|TRIM3_uc010rak.1_Silent_p.T639T	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	639	NHL 4.				nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TATGGAAGTCCGTTACTACAA	0.478000													15	44					0	0	1	0	0	
OR5P3	120066	broad.mit.edu	37	11	7846993	7846993	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:7846993T>C	uc010rbg.1	-	1	527	c.527A>G	c.(526-528)CAC>CGC	p.H176R		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ACAGAAAAAGTGATTGACTTT	0.408000													31	65					0	0	1	0	0	
DENND5A	23258	broad.mit.edu	37	11	9167297	9167297	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:9167297G>T	uc001mhl.2	-	17	3178	c.2923C>A	c.(2923-2925)CCA>ACA	p.P975T	DENND5A_uc001mhk.2_Missense_Mutation_p.P318T|DENND5A_uc010rbw.1_Missense_Mutation_p.P975T|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	975	PLAT.									liver(1)	1						CAGATCCATGGGTTGGCAGTG	0.483000													101	200					4.09449e-47	4.46626e-47	1	1	0	
MRVI1	10335	broad.mit.edu	37	11	10615133	10615133	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:10615133C>T	uc010rcc.1	-	17	2467	c.2081G>A	c.(2080-2082)CGG>CAG	p.R694Q	uc001miu.2_Intron|MRVI1_uc001miw.2_Missense_Mutation_p.R685Q|MRVI1_uc010rcb.1_Missense_Mutation_p.R686Q|MRVI1_uc009ygb.1_Missense_Mutation_p.R379Q|MRVI1_uc001mix.2_Missense_Mutation_p.R379Q|MRVI1_uc001miz.2_Missense_Mutation_p.R603Q|MRVI1_uc009ygc.1_Missense_Mutation_p.R603Q|MRVI1_uc010rcd.1_Missense_Mutation_p.R488Q|MRVI1_uc009ygd.1_Missense_Mutation_p.R379Q|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	667					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GCTGACCCTCCGGCGAGGCAT	0.517000													5	34					0	0	1	0	0	
GALNTL4	374378	broad.mit.edu	37	11	11292743	11292743	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:11292743C>T	uc001mjo.2	-	11	2193	c.1772G>A	c.(1771-1773)TGC>TAC	p.C591Y		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	591	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		CTGGCCCGAGCACTTCTGCAA	0.617000													19	45					0	0	1	0	0	
USP47	55031	broad.mit.edu	37	11	11974417	11974417	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:11974417A>C	uc001mjs.2	+	25	4476	c.3713A>C	c.(3712-3714)AAG>ACG	p.K1238T	USP47_uc001mjr.2_Missense_Mutation_p.K1170T|USP47_uc009ygi.2_Missense_Mutation_p.K40T	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	1258					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		TTGCGAGAGAAGGTAAGTTCA	0.333000													32	59					0	0	1	0	0	
MICAL2	9645	broad.mit.edu	37	11	12241975	12241975	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:12241975C>T	uc001mjz.2	+	9	1464	c.1176C>T	c.(1174-1176)CTC>CTT	p.L392L	MICAL2_uc010rch.1_Silent_p.L392L|MICAL2_uc001mka.2_Silent_p.L392L|MICAL2_uc010rci.1_Silent_p.L392L|MICAL2_uc001mkb.2_Silent_p.L392L|MICAL2_uc001mkc.2_Silent_p.L392L|MICAL2_uc001mkd.2_Silent_p.L221L|MICAL2_uc010rcj.1_5'Flank	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	392						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		ACCAGCTGCTCGTGGCCCTTG	0.597000													4	37					0	0	1	0	0	
ARNTL	406	broad.mit.edu	37	11	13399935	13399935	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:13399935G>A	uc001mkr.2	+	17	1874	c.1466G>A	c.(1465-1467)CGG>CAG	p.R489Q	ARNTL_uc001mko.2_Missense_Mutation_p.R445Q|ARNTL_uc001mkp.2_Missense_Mutation_p.R488Q|ARNTL_uc001mkq.2_Missense_Mutation_p.R488Q|ARNTL_uc001mks.2_Missense_Mutation_p.R446Q|ARNTL_uc001mkt.2_Missense_Mutation_p.R489Q|ARNTL_uc001mku.2_RNA|ARNTL_uc001mkw.2_Missense_Mutation_p.R446Q|ARNTL_uc001mkx.2_Missense_Mutation_p.R487Q|ARNTL_uc001mky.2_Missense_Mutation_p.R27Q	NM_001178	NP_001169	O00327	BMAL1_HUMAN	aryl hydrocarbon receptor nuclear	489					circadian rhythm|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	aryl hydrocarbon receptor binding|DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0				Epithelial(150;0.0243)		GGGGGAACCCGGGCTGGGGCA	0.473000													5	13					0	0	1	0	0	
PDE3B	5140	broad.mit.edu	37	11	14808095	14808095	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:14808095G>A	uc001mln.2	+	3	1495	c.1142G>A	c.(1141-1143)CGG>CAG	p.R381Q	PDE3B_uc010rcr.1_Intron	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	381					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						TCCTCTCTACGGAGTATTAGT	0.438000													42	99					0	0	1	0	0	
ABCC8	6833	broad.mit.edu	37	11	17428576	17428576	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:17428576G>A	uc001mnc.2	-	25	3147	c.3021C>T	c.(3019-3021)GCC>GCT	p.A1007A		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1007	Helical; Name=12; (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCAGGATGCCGGCGGAGGACA	0.627000													27	39					0	0	1	0	0	
USH1C	10083	broad.mit.edu	37	11	17547960	17547960	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:17547960C>A	uc001mnf.2	-	8	717	c.608G>T	c.(607-609)GGA>GTA	p.G203V	USH1C_uc001mne.2_Missense_Mutation_p.G203V|USH1C_uc009yhb.2_Missense_Mutation_p.G203V|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.G167V	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	203					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						TTCCCGATTTCCAGGGGAGCC	0.597000													4	16					0.00909568	0.00915269	1	1	0	
USH1C	10083	broad.mit.edu	37	11	17547982	17547982	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:17547982G>A	uc001mnf.2	-	8	695	c.586C>T	c.(586-588)CGA>TGA	p.R196*	USH1C_uc001mne.2_Nonsense_Mutation_p.R196*|USH1C_uc009yhb.2_Nonsense_Mutation_p.R196*|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Nonsense_Mutation_p.R160*	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	196					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						AGGCTGCCTCGCACGCCCTGA	0.597000													4	16					0	0	1	0	0	
SPTY2D1	144108	broad.mit.edu	37	11	18636421	18636421	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:18636421C>T	uc001moy.2	-	3	1616	c.1400G>A	c.(1399-1401)CGG>CAG	p.R467Q	SPTY2D1_uc010rdi.1_Missense_Mutation_p.R467Q	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	467	Ser-rich.									breast(1)	1						GCTCACAGGCCGGCCAGGGCC	0.627000													25	51					0	0	1	0	0	
DBX1	120237	broad.mit.edu	37	11	20177966	20177966	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:20177966C>T	uc001mpw.1	-	4	943	c.943G>A	c.(943-945)GAA>AAA	p.E315K		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	276	Poly-Glu.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCCTCCTCTTCGTTCCCAGGG	0.726000													6	15					0	0	1	0	0	
DBX1	120237	broad.mit.edu	37	11	20178193	20178193	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:20178193C>T	uc001mpw.1	-	4	716	c.716G>A	c.(715-717)CGC>CAC	p.R239H		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CGCACGGGGGCGGGGAGTGGA	0.652000													19	25					0	0	1	0	0	
PAX6	5080	broad.mit.edu	37	11	31824265	31824265	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:31824265G>A	uc001mtd.3	-	4	1018	c.128C>T	c.(127-129)TCC>TTC	p.S43F	PAX6_uc001mte.3_Missense_Mutation_p.S43F|PAX6_uc001mtg.3_Missense_Mutation_p.S43F|PAX6_uc001mtf.3_Missense_Mutation_p.S43F|PAX6_uc001mth.3_Missense_Mutation_p.S43F|PAX6_uc009yjr.2_Missense_Mutation_p.S43F	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	43	Paired.		S -> P (in AN).		blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					CAGAATTCGGGAAATGTCGCA	0.637000									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				7	8					0	0	1	0	0	
RCN1	5954	broad.mit.edu	37	11	32119957	32119957	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:32119957T>C	uc010reb.1	+	3	776	c.510T>C	c.(508-510)CGT>CGC	p.R170R	RCN1_uc010rea.1_Silent_p.R119R|RCN1_uc001mtk.2_Silent_p.R4R	NM_002901	NP_002892	Q15293	RCN1_HUMAN	reticulocalbin 1 precursor	170	EF-hand 3.					endoplasmic reticulum lumen	calcium ion binding			large_intestine(1)	1	Lung SC(675;0.225)					TGCTGCCACGTGATGAGAGAA	0.443000													22	37					0	0	1	0	0	
HIPK3	10114	broad.mit.edu	37	11	33350149	33350149	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:33350149G>A	uc001mul.1	+	3	1461	c.1191G>A	c.(1189-1191)CCG>CCA	p.P397P	HIPK3_uc001mum.1_Silent_p.P397P|HIPK3_uc009yjv.1_Silent_p.P397P|HIPK3_uc009yjw.1_RNA	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	397	Protein kinase.				anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						TTGGATGGCCGCTCTACCCAG	0.378000													24	56					0	0	1	0	0	
TRAF6	7189	broad.mit.edu	37	11	36511764	36511764	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:36511764G>A	uc001mwr.1	-	8	1533	c.1193C>T	c.(1192-1194)CCG>CTG	p.P398L	uc001mwq.1_5'Flank|TRAF6_uc001mws.1_Missense_Mutation_p.P398L	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	398	MATH.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				CTGAGCAGTCGGTAACTGAAG	0.488000													27	66					0	0	1	0	0	
RAG1	5896	broad.mit.edu	37	11	36597479	36597479	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:36597479C>T	uc001mwu.3	+	2	2749	c.2625C>T	c.(2623-2625)TCC>TCT	p.S875S	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	875					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TAATTCCTTCCGAGGAGAGGC	0.483000									Familial_Hemophagocytic_Lymphohistiocytosis				26	63					0	0	1	0	0	
KBTBD4	55709	broad.mit.edu	37	11	47594872	47594872	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:47594872A>G	uc001nfx.2	-	4	1338	c.1167T>C	c.(1165-1167)GAT>GAC	p.D389D	PTPMT1_uc001nfs.3_3'UTR|PTPMT1_uc001nfv.3_3'UTR|PTPMT1_uc009ylt.2_3'UTR|PTPMT1_uc001nfu.3_3'UTR|NDUFS3_uc001nft.3_Intron|KBTBD4_uc001nfw.1_Silent_p.D414D|KBTBD4_uc001nfz.2_Silent_p.D405D|KBTBD4_uc001nfy.2_Silent_p.D389D	NM_016506	NP_057590	Q9NVX7	KBTB4_HUMAN	kelch repeat and BTB (POZ) domain containing 4	389	Kelch 4.									ovary(1)|central_nervous_system(1)	2						AGAAGTCCAGATCATTCTCCT	0.532000													39	99					0	0	1	0	0	
NDUFS3	4722	broad.mit.edu	37	11	47600835	47600835	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:47600835T>C	uc001nga.2	+	2	164	c.82T>C	c.(82-84)TCC>CCC	p.S28P	NDUFS3_uc001nft.3_Intron|KBTBD4_uc001nfw.1_5'Flank|KBTBD4_uc001nfx.2_5'Flank|KBTBD4_uc001nfz.2_5'Flank|KBTBD4_uc001nfy.2_5'Flank|NDUFS3_uc010rhn.1_Missense_Mutation_p.S28P	NM_004551	NP_004542	O75489	NDUS3_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 3	28					induction of apoptosis|mitochondrial electron transport, NADH to ubiquinone|negative regulation of cell growth|reactive oxygen species metabolic process|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	TGGGCGACCCTCCGTTCTGTT	0.692000													19	60					0	0	1	0	0	
NUP160	23279	broad.mit.edu	37	11	47825038	47825038	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:47825038A>T	uc001ngm.2	-	22	2812	c.2727T>A	c.(2725-2727)TGT>TGA	p.C909*	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	909					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						GCATAAATCGACAGGAACCAA	0.358000													22	69					0	0	1	0	0	
NUP160	23279	broad.mit.edu	37	11	47837094	47837094	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:47837094G>A	uc001ngm.2	-	13	1708	c.1623C>T	c.(1621-1623)GCC>GCT	p.A541A	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	541					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						GGTGAGAGAGGGCTTCTTGAT	0.423000													30	80					0	0	1	0	0	
RTN4RL2	349667	broad.mit.edu	37	11	57235092	57235092	+	Silent	SNP	G	A	A	rs143661405	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:57235092G>A	uc010rjt.1	+	2	42	c.42G>A	c.(40-42)TCG>TCA	p.S14S		NM_178570	NP_848665	Q86UN3	R4RL2_HUMAN	reticulon 4 receptor-like 2 precursor	14					axon regeneration	anchored to plasma membrane	receptor activity				0						CTCCCGCCTCGGCCTGCCTCC	0.682000													33	65					0	0	1	0	0	
TMX2	51075	broad.mit.edu	37	11	57480227	57480227	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:57480227G>A	uc001nlc.1	+	1	186	c.137G>A	c.(136-138)TGC>TAC	p.C46Y	CTNND1_uc001nlf.1_5'UTR|MED19_uc001nla.1_5'Flank|MED19_uc001nlb.2_5'Flank|TMX2_uc001nld.1_5'UTR|TMX2_uc001nle.1_Missense_Mutation_p.C46Y	NM_015959	NP_057043	Q9Y320	TMX2_HUMAN	thioredoxin domain containing 14 isoform 1	46					cell redox homeostasis	integral to membrane					0						CCGCCGCTCTGCCACGGTCTG	0.627000													12	23					0	0	1	0	0	
OR9Q2	219957	broad.mit.edu	37	11	57958429	57958429	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:57958429C>T	uc010rka.1	+	1	467	c.467C>T	c.(466-468)GCC>GTC	p.A156V		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				TTTTTCAGTGCCTTTGTTCGA	0.502000													15	45					0	0	1	0	0	
OR1S1	219959	broad.mit.edu	37	11	57983091	57983091	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:57983091C>T	uc010rkc.1	+	1	875	c.875C>T	c.(874-876)ACT>ATT	p.T292I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				GTCCTATTCACTGTGGTGACA	0.438000													45	107					0	0	1	0	0	
OR5B17	219965	broad.mit.edu	37	11	58126075	58126075	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:58126075G>C	uc010rke.1	-	1	468	c.468C>G	c.(466-468)ATC>ATG	p.I156M		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CTCCAATTTGGATAGAAGCAT	0.433000													26	39					0	0	1	0	0	
MS4A14	84689	broad.mit.edu	37	11	60183281	60183281	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:60183281A>G	uc001npj.2	+	5	1405	c.840A>G	c.(838-840)CAA>CAG	p.Q280Q	MS4A14_uc001npi.2_Silent_p.Q168Q|MS4A14_uc001npn.2_Silent_p.Q18Q|MS4A14_uc001npk.2_Silent_p.Q263Q|MS4A14_uc001npl.2_Silent_p.Q18Q|MS4A14_uc001npm.2_Silent_p.Q18Q	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	280						integral to membrane	receptor activity			breast(1)	1						AAGATCTACAATCTGCTATTG	0.403000													18	49					0	0	1	0	0	
MS4A12	54860	broad.mit.edu	37	11	60269505	60269505	+	Missense_Mutation	SNP	G	A	A	rs111546873		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:60269505G>A	uc001npr.2	+	4	521	c.464G>A	c.(463-465)CGT>CAT	p.R155H		NM_017716	NP_060186	Q9NXJ0	M4A12_HUMAN	membrane-spanning 4-domains, subfamily A, member	155	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						GAGCTTTCCCGTTGTCTGGTA	0.393000													54	138					0	0	1	0	0	
ZP1	22917	broad.mit.edu	37	11	60640928	60640928	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:60640928C>T	uc001nqd.2	+	8	1341	c.1321C>T	c.(1321-1323)CGG>TGG	p.R441W	ZP1_uc001nqe.2_Missense_Mutation_p.R148W	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	441	Extracellular (Potential).|ZP.				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						TGTGGAGGTCCGGCTTCTGCA	0.617000													13	41					0	0	1	0	0	
ZP1	22917	broad.mit.edu	37	11	60642610	60642610	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:60642610C>T	uc001nqd.2	+	11	1683	c.1663C>T	c.(1663-1665)CGA>TGA	p.R555*	ZP1_uc001nqe.2_Nonsense_Mutation_p.R262*	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	555	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						AGGACAGCGACGATCCTCAGG	0.582000													15	40					0	0	1	0	0	
TMEM109	79073	broad.mit.edu	37	11	60689491	60689491	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:60689491T>C	uc001nqg.2	+	4	964	c.586T>C	c.(586-588)TAC>CAC	p.Y196H	TMEM109_uc001nqh.2_Missense_Mutation_p.Y196H|TMEM132A_uc001nqi.2_5'Flank|TMEM132A_uc001nqj.2_5'Flank	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	196	Helical; (Potential).					integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						GCTGATCCTCTACGCCCTGCT	0.677000													19	34					0	0	1	0	0	
TMEM132A	54972	broad.mit.edu	37	11	60703652	60703652	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:60703652G>A	uc001nqj.2	+	11	2538	c.2345G>A	c.(2344-2346)TGG>TAG	p.W782*	TMEM132A_uc001nqi.2_Nonsense_Mutation_p.W783*|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	782	Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						AGCCCTGCTTGGAGCCCACCA	0.697000													11	22					0	0	1	0	0	
TMEM132A	54972	broad.mit.edu	37	11	60703726	60703726	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:60703726G>A	uc001nqj.2	+	11	2612	c.2419G>A	c.(2419-2421)GTG>ATG	p.V807M	TMEM132A_uc001nqi.2_Missense_Mutation_p.V808M|TMEM132A_uc001nqm.2_Missense_Mutation_p.V17M	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	807	Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CAACACAGGTGTGAGGGGCAA	0.562000													20	36					0	0	1	0	0	
DAK	26007	broad.mit.edu	37	11	61113877	61113877	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:61113877G>A	uc001nre.2	+	18	1887	c.1630G>A	c.(1630-1632)GCC>ACC	p.A544T	DAK_uc009ynm.1_3'UTR	NM_015533	NP_056348	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2	544	DhaL.				glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding				0						AGCCGGAAGAGCCAGTTATAT	0.637000													32	141					0	0	1	0	0	
DAGLA	747	broad.mit.edu	37	11	61495668	61495668	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:61495668G>A	uc001nsa.2	+	7	791	c.680G>A	c.(679-681)CGG>CAG	p.R227Q		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	227	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GAGTTCTTCCGGGACCTTGAC	0.627000													9	87					0	0	1	0	0	
EEF1G	1937	broad.mit.edu	37	11	62338497	62338497	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:62338497G>A	uc001ntm.1	-	5	608	c.462C>T	c.(460-462)GGC>GGT	p.G154G	EEF1G_uc010rlw.1_Silent_p.G204G|EEF1G_uc001ntn.1_Silent_p.G34G	NM_001404	NP_001395	P26641	EF1G_HUMAN	eukaryotic translation elongation factor 1	154	GST C-terminal.				response to virus	cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						TCACTCGTTCGCCCACCAGAA	0.488000													32	109					0	0	1	0	0	
PLCB3	5331	broad.mit.edu	37	11	64029923	64029923	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:64029923C>T	uc001nzb.2	+	18	2083	c.2083C>T	c.(2083-2085)CGC>TGC	p.R695C	PLCB3_uc009ypg.1_Missense_Mutation_p.R695C|PLCB3_uc009yph.1_Missense_Mutation_p.R628C|PLCB3_uc009ypi.2_Missense_Mutation_p.R695C	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	695	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						GTACAACGGGCGCAGCGGGTA	0.637000													40	65					0	0	1	0	0	
ATG2A	23130	broad.mit.edu	37	11	64675064	64675064	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:64675064C>T	uc001obx.2	-	18	2695	c.2580G>A	c.(2578-2580)TCG>TCA	p.S860S		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	860							protein binding			ovary(1)|central_nervous_system(1)	2						CGGGGAAGCCCGAGGGCTGGG	0.617000													5	8					0	0	1	0	0	
MAP3K11	4296	broad.mit.edu	37	11	65380977	65380977	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:65380977C>A	uc001oew.2	-	1	744	c.251G>T	c.(250-252)TGG>TTG	p.W84L	MAP3K11_uc010rol.1_5'Flank|PCNXL3_uc001oey.2_5'Flank	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	84	SH3.|Gly-rich.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CTGGCCCGCCCACCAGCCCTC	0.692000													5	22					3.59834e-05	3.66686e-05	1	1	0	
EFEMP2	30008	broad.mit.edu	37	11	65637409	65637409	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:65637409G>A	uc001ofy.3	-	7	840	c.646C>T	c.(646-648)CGC>TGC	p.R216C	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Missense_Mutation_p.R216C	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	216	EGF-like 4; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		TTGAAGCAGCGCTGCTCGCAT	0.607000													33	65					0	0	1	0	0	
EFEMP2	30008	broad.mit.edu	37	11	65638097	65638097	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:65638097A>G	uc001ofy.3	-	5	594	c.400T>C	c.(400-402)TGT>CGT	p.C134R	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Missense_Mutation_p.C134R	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	134	EGF-like 2; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		CTGGGGCGACAGTCGTGCAGG	0.612000													5	12					0	0	1	0	0	
GAL3ST3	89792	broad.mit.edu	37	11	65810490	65810490	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:65810490C>T	uc001ogv.2	-	2	944	c.784G>A	c.(784-786)GTG>ATG	p.V262M	GAL3ST3_uc001ogw.2_Missense_Mutation_p.V262M	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	262	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						GCGTAGAGCACGTCGTCCAGG	0.582000													7	12					0	0	1	0	0	
NPAS4	266743	broad.mit.edu	37	11	66192084	66192084	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:66192084C>T	uc001ohx.1	+	7	1899	c.1723C>T	c.(1723-1725)CCC>TCC	p.P575S	NPAS4_uc010rpc.1_Missense_Mutation_p.P365S	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	575					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TGAGAAGTTGCCCCCAAGTCC	0.612000													34	157					0	0	1	0	0	
DPP3	10072	broad.mit.edu	37	11	66258993	66258993	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:66258993A>G	uc001oig.1	+	8	889	c.827A>G	c.(826-828)CAG>CGG	p.Q276R	DPP3_uc001oif.1_Missense_Mutation_p.Q276R|DPP3_uc010rpe.1_Missense_Mutation_p.Q265R	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	276					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						CACCAGGGGCAGATGCTGGCC	0.662000											OREG0021109	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	38					0	0	1	0	0	
CTSF	8722	broad.mit.edu	37	11	66332428	66332428	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:66332428G>T	uc001oip.2	-	9	1185	c.1095C>A	c.(1093-1095)TCC>TCA	p.S365S		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	365					proteolysis	lysosome	cysteine-type endopeptidase activity				0						AGAAGTTGCAGGACTGCATGT	0.577000													28	88					3.73988e-18	4.02476e-18	1	1	0	
SPTBN2	6712	broad.mit.edu	37	11	66458820	66458820	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:66458820C>T	uc001ojd.2	-	26	5572	c.5500G>A	c.(5500-5502)GCT>ACT	p.A1834T		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1834	Spectrin 15.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCCTCGGCAGCGTTGAGGTCG	0.677000													23	59					0	0	1	0	0	
SPTBN2	6712	broad.mit.edu	37	11	66461663	66461663	+	Missense_Mutation	SNP	G	T	T	rs139883853		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:66461663G>T	uc001ojd.2	-	21	4522	c.4450C>A	c.(4450-4452)CTG>ATG	p.L1484M		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1484	Spectrin 11.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GAAGCCTGCAGGCGCCGGCAG	0.652000											OREG0021113	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	65					5.4927e-09	5.73971e-09	1	1	0	
SPTBN2	6712	broad.mit.edu	37	11	66469142	66469142	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:66469142G>A	uc001ojd.2	-	15	2801	c.2729C>T	c.(2728-2730)GCG>GTG	p.A910V		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	910	Spectrin 6.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GTCATTCACCGCGGTGATTTG	0.577000													29	133					0	0	1	0	0	
SPTBN2	6712	broad.mit.edu	37	11	66472908	66472908	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:66472908C>T	uc001ojd.2	-	14	1911	c.1839G>A	c.(1837-1839)TCG>TCA	p.S613S		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	613	Spectrin 3.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCACCCGCTCCGACACCAGCT	0.647000													12	37					0	0	1	0	0	
ADRBK1	156	broad.mit.edu	37	11	67048615	67048615	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:67048615G>T	uc009yrn.1	+	8	873	c.607G>T	c.(607-609)GGC>TGC	p.G203C	ADRBK1_uc009yrm.1_Missense_Mutation_p.G203C	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	203	Protein kinase.|ATP (By similarity).				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	CGGGGGCTTTGGCGAGGTCTA	0.667000													15	49					9.16793e-09	9.55196e-09	1	1	0	
ANKRD13D	338692	broad.mit.edu	37	11	67069008	67069008	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:67069008C>T	uc001okc.1	+	14	1648	c.1137C>T	c.(1135-1137)AAC>AAT	p.N379N	ANKRD13D_uc001okd.1_Silent_p.N466N|ANKRD13D_uc001oke.1_Silent_p.N379N|ANKRD13D_uc001okg.1_Silent_p.N162N|ANKRD13D_uc001okh.1_Silent_p.N162N|ANKRD13D_uc001oki.1_Silent_p.N116N|SSH3_uc001okj.2_5'Flank|SSH3_uc001okk.2_5'Flank|SSH3_uc001okl.2_5'Flank	NM_207354	NP_997237	Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	379										ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			AAGTGCCCAACGGGTACAGCG	0.662000													15	54					0	0	1	0	0	
ALDH3B2	222	broad.mit.edu	37	11	67431956	67431956	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:67431956C>T	uc001omr.2	-	8	1223	c.784G>A	c.(784-786)GTG>ATG	p.V262M	ALDH3B2_uc001oms.2_Missense_Mutation_p.V262M|ALDH3B2_uc009ysa.1_Missense_Mutation_p.V262M	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	262					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	TGCACGTTCACGATGGGCAGG	0.652000													26	67					0	0	1	0	0	
LOC645332	645332	broad.mit.edu	37	11	67570489	67570489	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:67570489C>T	uc001omt.3	-	2	166	c.143G>A	c.(142-144)CGG>CAG	p.R48Q	LOC645332_uc001omu.3_Missense_Mutation_p.R48Q	NR_024249				SubName: Full=cDNA FLJ57700, weakly similar to Protein FAM86A;												0						CAAAATATCCCGCAGCAGCTC	0.488000													22	92					0	0	1	0	0	
TCIRG1	10312	broad.mit.edu	37	11	67814962	67814962	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:67814962G>A	uc001one.2	+	11	1336	c.1228G>A	c.(1228-1230)GGG>AGG	p.G410R	TCIRG1_uc001ong.2_Missense_Mutation_p.G194R|TCIRG1_uc001onh.2_Missense_Mutation_p.G112R|TCIRG1_uc001oni.2_5'UTR|TCIRG1_uc009ysd.2_5'Flank	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	410	Helical; (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						TGTGGGCCACGGGCTGCTCAT	0.642000													16	25					0	0	1	0	0	
NUMA1	4926	broad.mit.edu	37	11	71725778	71725778	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:71725778C>T	uc001orl.1	-	15	2943	c.2771G>A	c.(2770-2772)CGC>CAC	p.R924H	NUMA1_uc009ysw.1_Missense_Mutation_p.R487H|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Missense_Mutation_p.R924H|NUMA1_uc001orn.2_Missense_Mutation_p.R487H|NUMA1_uc009ysx.1_Missense_Mutation_p.R924H|NUMA1_uc001oro.1_Missense_Mutation_p.R924H	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	924	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						ACCTGCCTTGCGCACCAAGGT	0.602000			T	RARA	APL								18	77					0	0	1	0	0	
NUMA1	4926	broad.mit.edu	37	11	71729497	71729497	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:71729497C>T	uc001orl.1	-	11	977	c.805G>A	c.(805-807)GCG>ACG	p.A269T	NUMA1_uc009ysw.1_5'Flank|NUMA1_uc001ork.1_Missense_Mutation_p.A269T|NUMA1_uc001orm.1_Missense_Mutation_p.A269T|NUMA1_uc001orn.2_5'Flank|NUMA1_uc009ysx.1_Missense_Mutation_p.A269T|NUMA1_uc001oro.1_Missense_Mutation_p.A269T|NUMA1_uc009ysy.1_Missense_Mutation_p.A269T|NUMA1_uc001orp.2_Missense_Mutation_p.A269T|NUMA1_uc001orq.2_Missense_Mutation_p.A269T	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	269	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						GGGCTGGCCGCCTGCTTCTCA	0.602000			T	RARA	APL								13	36					0	0	1	0	0	
INPPL1	3636	broad.mit.edu	37	11	71948467	71948467	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:71948467A>T	uc001osf.2	+	26	3326	c.3179A>T	c.(3178-3180)GAC>GTC	p.D1060V	INPPL1_uc001osg.2_Missense_Mutation_p.D818V	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	1060	Pro-rich.				actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CCACTGCCGGACTCAGCCATC	0.677000													16	72					0	0	1	0	0	
PDE2A	5138	broad.mit.edu	37	11	72288632	72288632	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:72288632C>T	uc010rrc.1	-	31	2865	c.2622G>A	c.(2620-2622)TTG>TTA	p.L874L	PDE2A_uc001oso.2_Silent_p.L853L|PDE2A_uc010rra.1_Silent_p.L867L|PDE2A_uc001osn.2_Silent_p.L618L|PDE2A_uc010rrb.1_Silent_p.L865L|PDE2A_uc010rrd.1_Silent_p.L759L	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	874	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	ACAGGTCCTGCAACAGCCTGC	0.597000													6	40					0	0	1	0	0	
ATG16L2	89849	broad.mit.edu	37	11	72540426	72540426	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:72540426C>T	uc001otd.2	+	18	1891	c.1851C>T	c.(1849-1851)CTC>CTT	p.L617L	ATG16L2_uc001ote.2_Silent_p.L511L|ATG16L2_uc009ytj.1_Intron|ATG16L2_uc001otf.2_Silent_p.L372L|ATG16L2_uc001otg.2_Silent_p.L351L|ATG16L2_uc009ytk.2_Silent_p.L338L	NM_033388	NP_203746	Q8NAA4	A16L2_HUMAN	ATG16 autophagy related 16-like 2	617	WD 7.				autophagy|protein transport	cytoplasm	protein binding				0			BRCA - Breast invasive adenocarcinoma(5;2.73e-06)			AGGTTGTGCTCTGGCAGTAGG	0.483000													9	14					0	0	1	0	0	
P2RY6	5031	broad.mit.edu	37	11	73007627	73007627	+	Missense_Mutation	SNP	G	A	A	rs61745521	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:73007627G>A	uc001otm.2	+	4	469	c.64G>A	c.(64-66)GAG>AAG	p.E22K	P2RY6_uc001otn.2_Missense_Mutation_p.E22K|P2RY6_uc001oto.2_Missense_Mutation_p.E22K|P2RY6_uc001otp.2_Missense_Mutation_p.E22K|P2RY6_uc001otq.2_Missense_Mutation_p.E22K|P2RY6_uc001otr.2_Missense_Mutation_p.E22K|P2RY6_uc001ots.2_Missense_Mutation_p.E22K	NM_176796	NP_789766	Q15077	P2RY6_HUMAN	pyrimidinergic receptor P2Y6	22	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						TGTCTACCGCGAGAACTTCAA	0.607000													48	152					0	0	1	0	0	
C2CD3	26005	broad.mit.edu	37	11	73785385	73785385	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:73785385G>A	uc001ouu.2	-	24	5091	c.4864C>T	c.(4864-4866)CGC>TGC	p.R1622C	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1622	C2 2.					centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					TGCGTCAGGCGGACTTCAGCT	0.557000													15	43					0	0	1	0	0	
MAP6	4135	broad.mit.edu	37	11	75298727	75298727	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:75298727C>T	uc001owu.2	-	4	1884	c.1819G>A	c.(1819-1821)GGT>AGT	p.G607S		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	607	Pro-rich.					Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					ACTATGGGACCTTGATCCTTG	0.537000													41	162					0	0	1	0	0	
UVRAG	7405	broad.mit.edu	37	11	75826988	75826988	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:75826988A>G	uc001oxc.2	+	14	1567	c.1326A>G	c.(1324-1326)CTA>CTG	p.L442L	UVRAG_uc010rrw.1_Silent_p.L341L|UVRAG_uc001oxd.2_Silent_p.L70L|UVRAG_uc010rrx.1_Silent_p.L70L|UVRAG_uc010rry.1_5'UTR	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	442					DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						AACATGGACTAGGGACTCCAG	0.388000													8	52					0	0	1	0	0	
INTS4	92105	broad.mit.edu	37	11	77602450	77602450	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:77602450C>T	uc001oys.2	-	21	2535	c.2507G>A	c.(2506-2508)CGG>CAG	p.R836Q	C11orf67_uc001oyp.2_Intron|C11orf67_uc001oyr.1_Intron|INTS4_uc001oyt.2_RNA	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	836					snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			AGAGGTAAACCGCAAAGGGTT	0.522000													7	25					0	0	1	0	0	
INTS4	92105	broad.mit.edu	37	11	77672170	77672170	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:77672170C>T	uc001oys.2	-	5	514	c.486G>A	c.(484-486)ACG>ACA	p.T162T	INTS4_uc001oyt.2_RNA|INTS4_uc001oyu.1_Silent_p.T162T	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	162	HEAT 2.				snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			CACCATGAGACGTATCTGTCA	0.338000													34	95					0	0	1	0	0	
USP35	57558	broad.mit.edu	37	11	77920763	77920763	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:77920763T>C	uc009yva.1	+	10	2108	c.1862T>C	c.(1861-1863)ATC>ACC	p.I621T	USP35_uc001oze.2_Missense_Mutation_p.I377T|USP35_uc001ozc.2_Missense_Mutation_p.I189T|USP35_uc010rsp.1_Missense_Mutation_p.I53T|USP35_uc001ozd.2_Missense_Mutation_p.I232T|USP35_uc001ozf.2_Missense_Mutation_p.I352T	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	621					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			ACAGAAGACATCACAGCCCGG	0.677000													22	54					0	0	1	0	0	
MAML2	84441	broad.mit.edu	37	11	95724695	95724695	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:95724695G>A	uc001pfw.1	-	3	3617	c.2332C>T	c.(2332-2334)CTG>TTG	p.L778L		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	778					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				GCGTCAGCCAGCATCTGCTGC	0.428000			T	MECT1|CRTC3	salivary gland mucoepidermoid								50	129					0	0	1	0	0	
TRPC6	7225	broad.mit.edu	37	11	101342905	101342905	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:101342905A>G	uc001pgk.3	-	8	2593	c.2168T>C	c.(2167-2169)TTA>TCA	p.L723S	TRPC6_uc009ywy.2_Missense_Mutation_p.L607S|TRPC6_uc009ywz.1_Missense_Mutation_p.L668S	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	723	Helical; (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CATGGCAATTAACATATTTAG	0.318000													39	149					0	0	1	0	0	
GRIA4	2893	broad.mit.edu	37	11	105769149	105769149	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:105769149C>T	uc001pix.2	+	7	1327	c.881C>T	c.(880-882)CCA>CTA	p.P294L	GRIA4_uc001piu.1_Missense_Mutation_p.P294L|GRIA4_uc001piw.2_Missense_Mutation_p.P294L|GRIA4_uc009yxk.1_Missense_Mutation_p.P294L	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	294	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	GAGACTCCTCCAAAGGTATTT	0.323000													14	37					0	0	1	0	0	
KIAA1826	84437	broad.mit.edu	37	11	105880801	105880801	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:105880801C>T	uc001piy.2	-	3	672	c.499G>A	c.(499-501)GTC>ATC	p.V167I	KIAA1826_uc001piz.2_Missense_Mutation_p.V167I	NM_032424	NP_115800	Q8NCY6	K1826_HUMAN	hypothetical protein LOC84437	167						nucleus				breast(1)	1		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.56e-05)|Epithelial(105;0.00432)|all cancers(92;0.0309)		TCTGGTATGACGGATGACAAC	0.373000													30	96					0	0	1	0	0	
ARHGAP20	57569	broad.mit.edu	37	11	110485315	110485315	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:110485315G>T	uc001pkz.1	-	7	885	c.600C>A	c.(598-600)ATC>ATA	p.I200I	ARHGAP20_uc001pky.1_Silent_p.I177I|ARHGAP20_uc009yyb.1_Silent_p.I164I|ARHGAP20_uc001pla.1_Silent_p.I164I	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	200	Ras-associating.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		CCTTGGCGAAGATTTTGAGGG	0.408000													28	89					2.12542e-12	2.25299e-12	1	1	0	
POU2AF1	5450	broad.mit.edu	37	11	111228334	111228334	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:111228334G>T	uc001plg.3	-	4	547	c.292C>A	c.(292-294)CCC>ACC	p.P98T		NM_006235	NP_006226	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	98					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			kidney(1)	1		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		GGGGCCAGGGGCTGCAGGGTG	0.632000			T	BCL6	NHL								10	32					2.17888e-05	2.22293e-05	1	1	0	
LAYN	143903	broad.mit.edu	37	11	111431071	111431071	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:111431071T>A	uc001plr.1	+	8	1373	c.1037T>A	c.(1036-1038)CTG>CAG	p.L346Q	LAYN_uc001plp.1_Missense_Mutation_p.L338Q|LAYN_uc001plq.1_3'UTR|LAYN_uc001pls.1_3'UTR|LAYN_uc010rwg.1_Missense_Mutation_p.L193Q|LAYN_uc010rwh.1_Missense_Mutation_p.L194Q	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	346	Cytoplasmic (Potential).|3 X 5 AA repeats of E-S-G-X-V.|Interaction with NF2 (By similarity).|Interaction with TLN1 (By similarity).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		TTTGTGACTCTGGTGAGCGTG	0.473000													25	80					0	0	1	0	0	
DRD2	1813	broad.mit.edu	37	11	113295140	113295140	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:113295140C>T	uc001pnz.2	-	1	555	c.234G>A	c.(232-234)GTG>GTA	p.V78V	DRD2_uc010rwv.1_Silent_p.V78V|DRD2_uc001poa.3_Silent_p.V78V|DRD2_uc001pob.3_Silent_p.V78V|DRD2_uc009yyr.1_Silent_p.V78V	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	78	Helical; Name=2; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GGAGGTCGGCCACTGCGAGGC	0.637000													6	54					0	0	1	0	0	
HTR3A	3359	broad.mit.edu	37	11	113853960	113853960	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:113853960C>A	uc010rxb.1	+	5	744	c.511C>A	c.(511-513)CCC>ACC	p.P171T	HTR3A_uc010rxa.1_Missense_Mutation_p.P171T|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.P150T	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	165	Extracellular (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	CTACAACTTCCCCTTCGATGT	0.557000													49	166					1.4374e-25	1.5602e-25	1	1	0	
HTR3A	3359	broad.mit.edu	37	11	113860366	113860366	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:113860366C>T	uc010rxb.1	+	8	1665	c.1432C>T	c.(1432-1434)CGA>TGA	p.R478*	HTR3A_uc010rxa.1_Nonsense_Mutation_p.R446*|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Nonsense_Mutation_p.R425*	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	440	HA-stretch.|Cytoplasmic (Potential).			R->A: Increased conductance. Massive increase of conductance; when associated with Q-432 and D-436.	digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	AGAGGTGGCCCGAGACTGGCT	0.622000													21	70					0	0	1	0	0	
DSCAML1	57453	broad.mit.edu	37	11	117308626	117308626	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:117308626T>C	uc001prh.1	-	25	4599	c.4597A>G	c.(4597-4599)AAG>GAG	p.K1533E		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1473	Fibronectin type-III 5.|Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CCGTGGGTCTTGGCCTCGATG	0.652000													8	18					0	0	1	0	0	
TMEM25	84866	broad.mit.edu	37	11	118404781	118404781	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:118404781C>T	uc010rye.1	+	7	1048	c.874C>T	c.(874-876)CCA>TCA	p.P292S	TMEM25_uc001ptk.3_Missense_Mutation_p.P292S|TMEM25_uc001pth.2_Missense_Mutation_p.P248S|TMEM25_uc009zad.2_Missense_Mutation_p.P248S|TMEM25_uc001pti.2_Missense_Mutation_p.P144S|TMEM25_uc010ryf.1_Missense_Mutation_p.P195S|TMEM25_uc001ptl.2_Missense_Mutation_p.P292S|TMEM25_uc001ptm.2_Missense_Mutation_p.P248S|TMEM25_uc001ptn.2_Missense_Mutation_p.P248S	NM_032780	NP_116169	Q86YD3	TMM25_HUMAN	transmembrane protein 25 isoform 1	292	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane					0	all_hematologic(175;0.0349)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		CGTGCGCCTGCCACGGGAGAA	0.542000													8	52					0	0	1	0	0	
BCL9L	283149	broad.mit.edu	37	11	118771708	118771708	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:118771708G>A	uc001pug.2	-	6	3709	c.2744C>T	c.(2743-2745)TCG>TTG	p.S915L	BCL9L_uc009zal.2_Missense_Mutation_p.S910L	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	915	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GGTGAGGTCCGAAGGCCGCCT	0.652000													11	45					0	0	1	0	0	
TRAPPC4	51399	broad.mit.edu	37	11	118889337	118889337	+	Translation_Start_Site	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:118889337G>A	uc010ryo.1	+	1	97	c.-168G>A	c.(-170--166)GCGTG>GCATG		RPS25_uc001pun.2_5'Flank|TRAPPC4_uc010ryn.1_Translation_Start_Site|TRAPPC4_uc010ryp.1_Translation_Start_Site|TRAPPC4_uc001pup.2_RNA|TRAPPC4_uc010ryq.1_Translation_Start_Site	NM_016146	NP_057230	Q9Y296	TPPC4_HUMAN	trafficking protein particle complex 4						dendrite development|ER to Golgi vesicle-mediated transport	cis-Golgi network|dendrite|endoplasmic reticulum|Golgi stack|synaptic vesicle	protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_neural(223;0.224)|all_hematologic(192;0.243)		BRCA - Breast invasive adenocarcinoma(274;7.58e-05)		ATGCCCGAGCGTGTCGCTCCC	0.527000													7	14					0	0	1	0	0	
TECTA	7007	broad.mit.edu	37	11	121023760	121023760	+	Missense_Mutation	SNP	G	A	A	rs143250687		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:121023760G>A	uc010rzo.1	+	12	4276	c.4276G>A	c.(4276-4278)GGC>AGC	p.G1426S		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1426					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CCACAGCTGCGGCTGCTACTC	0.582000													9	29					0	0	1	0	0	
SC5DL	6309	broad.mit.edu	37	11	121177765	121177765	+	Splice_Site	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:121177765G>A	uc001pxu.2	+	5	593	c.445_splice	c.e5-1	p.R149_splice	SC5DL_uc001pxt.2_3'UTR|SC5DL_uc001pxv.2_Splice_Site_p.R149_splice	NM_006918	NP_008849	O75845	SC5D_HUMAN	sterol-C5-desaturase						fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	C-5 sterol desaturase activity|iron ion binding|lathosterol oxidase activity			ovary(1)	1		Breast(109;0.00328)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)	OV - Ovarian serous cystadenocarcinoma(1;0.0334)	BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.144)		TTCTCCTGCAGCGCCTACATA	0.418000													116	135					0	0	1	0	0	
SORL1	6653	broad.mit.edu	37	11	121414325	121414325	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:121414325G>A	uc001pxx.2	+	13	1834	c.1754G>A	c.(1753-1755)GGC>GAC	p.G585D		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	585	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TTTGTGTATGGCCTCCTCACA	0.493000													28	122					0	0	1	0	0	
RPUSD4	84881	broad.mit.edu	37	11	126075366	126075366	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:126075366T>C	uc001qde.2	-	5	847	c.793A>G	c.(793-795)ACT>GCT	p.T265A	RPUSD4_uc010sbl.1_Missense_Mutation_p.T72A|RPUSD4_uc009zbz.2_Missense_Mutation_p.T234A|RPUSD4_uc009zby.2_RNA	NM_032795	NP_116184	Q96CM3	RUSD4_HUMAN	RNA pseudouridylate synthase domain containing 4	265					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			breast(1)	1	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0761)		CTCTCACCAGTGATGGGCTGG	0.577000													15	41					0	0	1	0	0	
FOXRED1	55572	broad.mit.edu	37	11	126146084	126146084	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:126146084G>A	uc001qdi.2	+	8	988	c.941G>A	c.(940-942)GGC>GAC	p.G314D	FOXRED1_uc010sbn.1_Missense_Mutation_p.G144D|FOXRED1_uc010sbo.1_RNA|FOXRED1_uc010sbp.1_Missense_Mutation_p.G127D|FOXRED1_uc010sbq.1_Missense_Mutation_p.G181D|FOXRED1_uc001qdj.2_Missense_Mutation_p.G103D|FOXRED1_uc010sbr.1_Missense_Mutation_p.G300D|FOXRED1_uc001qdk.2_Missense_Mutation_p.G103D	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	314						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		ACCCTGCAGGGCACCAAGCTA	0.577000													4	13					0	0	1	0	0	
ARHGAP32	9743	broad.mit.edu	37	11	128839760	128839760	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:128839760A>C	uc009zcp.2	-	22	5306	c.5306T>G	c.(5305-5307)GTC>GGC	p.V1769G	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.V728G|ARHGAP32_uc001qez.2_Missense_Mutation_p.V1420G	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1769	Interaction with FYN.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						TTGGGACATGACAGGCCCTTT	0.522000													14	94					0	0	1	0	0	
ARHGAP32	9743	broad.mit.edu	37	11	128868349	128868349	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:128868349C>T	uc009zcp.2	-	11	1018	c.1018G>A	c.(1018-1020)GGC>AGC	p.G340S	ARHGAP32_uc009zcq.1_Missense_Mutation_p.G300S|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_5'UTR|ARHGAP32_uc001qfb.2_Missense_Mutation_p.G125S	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	340					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						ATGAGCTTGCCGTGCTTTTTA	0.383000													14	87					0	0	1	0	0	
PRDM10	56980	broad.mit.edu	37	11	129785593	129785593	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:129785593C>T	uc001qfm.2	-	17	2732	c.2500G>A	c.(2500-2502)GTC>ATC	p.V834I	PRDM10_uc001qfj.2_Missense_Mutation_p.V748I|PRDM10_uc001qfk.2_Missense_Mutation_p.V744I|PRDM10_uc001qfl.2_Missense_Mutation_p.V748I|PRDM10_uc010sbx.1_Missense_Mutation_p.V744I|PRDM10_uc001qfn.2_Missense_Mutation_p.V830I|PRDM10_uc009zcs.1_Missense_Mutation_p.V17I	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	834	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		GGACAGCAGACGGGAGGGGTG	0.597000													32	96					0	0	1	0	0	
ADAMTS8	11095	broad.mit.edu	37	11	130278394	130278394	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:130278394G>A	uc001qgg.3	-	8	2422	c.2064C>T	c.(2062-2064)TCC>TCT	p.S688S	ADAMTS8_uc001qgf.2_Silent_p.S169S	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	688	Cys-rich.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CCTTCCTGCAGGAGTTGCCTT	0.522000													28	108					0	0	1	0	0	
SPATA19	219938	broad.mit.edu	37	11	133714470	133714470	+	Silent	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:133714470T>A	uc001qgv.1	-	3	252	c.201A>T	c.(199-201)GTA>GTT	p.V67V		NM_174927	NP_777587	Q7Z5L4	SPT19_HUMAN	spermatogenesis associated 19 precursor	67					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrial outer membrane					0	all_hematologic(175;0.127)	all_cancers(12;5.59e-17)|all_epithelial(12;2.65e-12)|all_lung(97;0.00045)|Lung NSC(97;0.000861)|Breast(109;0.000873)|Medulloblastoma(222;0.0425)|Esophageal squamous(93;0.0844)|all_neural(223;0.117)		Epithelial(10;4.36e-10)|all cancers(11;7.1e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00286)|Lung(977;0.207)		TCTTCTCCCTTACACCCTGGG	0.512000													25	86					0	0	1	0	0	
NCAPD3	23310	broad.mit.edu	37	11	134023240	134023240	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:134023240G>A	uc001qhd.1	-	33	4877	c.4271C>T	c.(4270-4272)ACG>ATG	p.T1424M	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA|NCAPD3_uc001qhc.1_Missense_Mutation_p.T374M	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	1424					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		TGCTCCAAACGTGACATCACT	0.542000													38	137					0	0	1	0	0	
GLB1L3	112937	broad.mit.edu	37	11	134147764	134147764	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:134147764G>A	uc009zdf.2	+	3	680	c.320G>A	c.(319-321)CGC>CAC	p.R107H	GLB1L3_uc010scs.1_Missense_Mutation_p.R107H|GLB1L3_uc010sct.1_5'UTR	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	107					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		TGGAGGGACCGCCTGCTGAAG	0.612000													12	43					0	0	1	0	0	
CACNA2D4	93589	broad.mit.edu	37	12	2016659	2016659	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:2016659G>A	uc001qjp.2	-	6	959	c.728C>T	c.(727-729)ACG>ATG	p.T243M	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Missense_Mutation_p.T243M	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	243	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CCAGGTCAACGTTGGGTCTCT	0.458000													9	35					0	0	1	0	0	
TULP3	7289	broad.mit.edu	37	12	3040324	3040324	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:3040324G>A	uc010seh.1	+	6	695	c.614G>A	c.(613-615)CGG>CAG	p.R205Q	TULP3_uc010sef.1_RNA|TULP3_uc009zec.1_5'UTR|TULP3_uc010seg.1_RNA|TULP3_uc001qlj.2_Missense_Mutation_p.R205Q|TULP3_uc010sei.1_Missense_Mutation_p.R62Q	NM_003324	NP_003315	O75386	TULP3_HUMAN	tubby like protein 3 isoform 1	205					G-protein coupled receptor protein signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|extracellular region|nucleus|plasma membrane	phosphatidylinositol-4,5-bisphosphate binding				0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			GTAAGATGTCGGATAATCCGG	0.473000													57	55					0	0	1	0	0	
TEAD4	7004	broad.mit.edu	37	12	3131079	3131079	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:3131079G>A	uc010sej.1	+	10	1067	c.790G>A	c.(790-792)GTG>ATG	p.V264M	TEAD4_uc010sek.1_Missense_Mutation_p.V221M|TEAD4_uc001qln.2_Missense_Mutation_p.V136M	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	265					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			CCTCGAAGCCGTGGACATCCG	0.453000													29	133					0	0	1	0	0	
CCND2	894	broad.mit.edu	37	12	4388038	4388038	+	Missense_Mutation	SNP	C	T	T	rs143681287		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:4388038C>T	uc001qmo.2	+	3	829	c.524C>T	c.(523-525)TCT>TTT	p.S175F		NM_001759	NP_001750	P30279	CCND2_HUMAN	cyclin D2	175					cell division|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation	cyclin-dependent protein kinase holoenzyme complex|cytoplasm|membrane|nucleus	protein kinase binding			haematopoietic_and_lymphoid_tissue(1)|breast(1)|kidney(1)	3			all cancers(3;4.15e-10)|GBM - Glioblastoma multiforme(3;6.34e-05)|Colorectal(7;0.00245)|OV - Ovarian serous cystadenocarcinoma(31;0.00301)|COAD - Colon adenocarcinoma(12;0.0264)|STAD - Stomach adenocarcinoma(119;0.206)			GAGAAGCTGTCTCTGATCCGC	0.572000			T	IGL@	NHL,CLL								13	40					0	0	1	0	0	
KCNA1	3736	broad.mit.edu	37	12	5020887	5020887	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:5020887G>A	uc001qnh.2	+	2	1448	c.343G>A	c.(343-345)GAG>AAG	p.E115K		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	115					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CATGTTCTCCGAGGAGATCAA	0.632000													35	47					0	0	1	0	0	
C1R	715	broad.mit.edu	37	12	7188376	7188376	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:7188376C>A	uc010sfy.1	-	10	1637	c.1578G>T	c.(1576-1578)GTG>GTT	p.V526V		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	526	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TGAGCTCTTCCACATTTGTGT	0.572000													21	94					7.45023e-12	7.8785e-12	1	1	0	
CLEC6A	93978	broad.mit.edu	37	12	8618103	8618103	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:8618103T>C	uc001qum.1	+	4	364	c.247T>C	c.(247-249)TGG>CGG	p.W83R		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	83	Extracellular (Potential).				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					CCCAGCTTCTTGGAAGTCATT	0.398000													59	72					0	0	1	0	0	
PHC1	1911	broad.mit.edu	37	12	9085325	9085325	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:9085325G>A	uc001qvd.2	+	8	1428	c.1272G>A	c.(1270-1272)GCG>GCA	p.A424A	PHC1_uc001qvc.1_Silent_p.A379A|PHC1_uc010sgn.1_Silent_p.A424A|PHC1_uc001qve.2_Silent_p.A424A	NM_004426	NP_004417	P78364	PHC1_HUMAN	polyhomeotic 1-like	424					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						TCCAGTTGGCgcagcagcagc	0.458000													7	48					0	0	1	0	0	
CSDA	8531	broad.mit.edu	37	12	10862613	10862613	+	Missense_Mutation	SNP	C	T	T	rs146058214		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:10862613C>T	uc001qyt.2	-	6	917	c.674G>A	c.(673-675)CGC>CAC	p.R225H	CSDA_uc001qyu.2_Intron	NM_003651	NP_003642	P16989	DBPA_HUMAN	cold shock domain protein A isoform a	225					negative regulation of transcription from RNA polymerase II promoter|response to cold	cytoplasm|nucleus	double-stranded DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|lung(1)|large_intestine(1)	4	Glioma(1;0.155)					ATACTGGGGGCGGCGCAGCTG	0.642000													5	36					0	0	1	0	0	
TAS2R20	259295	broad.mit.edu	37	12	11150028	11150028	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:11150028C>T	uc001qzm.2	-	1	447	c.447G>A	c.(445-447)ACG>ACA	p.T149T	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176889	NP_795370	P59543	T2R20_HUMAN	taste receptor, type 2, member 20	149	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						CATTTATATACGTGTGTTTCA	0.388000													34	163					0	0	1	0	0	
MGST1	4257	broad.mit.edu	37	12	16510603	16510603	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:16510603G>A	uc001rdf.2	+	3	256	c.191G>A	c.(190-192)CGA>CAA	p.R64Q	MGST1_uc001rdg.2_Missense_Mutation_p.R64Q|MGST1_uc009zih.1_RNA|MGST1_uc001rdh.2_Missense_Mutation_p.R64Q|MGST1_uc001rdi.2_Missense_Mutation_p.R64Q	NM_145792	NP_665735	P10620	MGST1_HUMAN	microsomal glutathione S-transferase 1	64	Helical; (By similarity).				protein homotrimerization|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane	glutathione transferase activity				0		Hepatocellular(102;0.121)			Glutathione(DB00143)	AAGTATCTTCGAACAGATGAC	0.363000													26	40					0	0	1	0	0	
ITPR2	3709	broad.mit.edu	37	12	26493202	26493202	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:26493202G>A	uc001rhg.2	-	56	8334	c.7917C>T	c.(7915-7917)GGC>GGT	p.G2639G		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	2639	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GCTCACTGTCGCCTTCATTGC	0.488000													42	27					0	0	1	0	0	
ITPR2	3709	broad.mit.edu	37	12	26848568	26848568	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:26848568G>A	uc001rhg.2	-	10	1384	c.967C>T	c.(967-969)CGA>TGA	p.R323*		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	323	Cytoplasmic (Potential).|MIR 4.				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TGGGCATCTCGATAATCAGGA	0.303000													20	35					0	0	1	0	0	
DDX11	1663	broad.mit.edu	37	12	31244687	31244687	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:31244687C>T	uc001rjt.1	+	10	1375	c.1124C>T	c.(1123-1125)GCG>GTG	p.A375V	DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Missense_Mutation_p.A375V|DDX11_uc001rjs.1_Missense_Mutation_p.A375V|DDX11_uc001rju.1_Missense_Mutation_p.A53V|DDX11_uc001rjv.1_Missense_Mutation_p.A375V|DDX11_uc001rjw.1_Missense_Mutation_p.A349V|DDX11_uc001rjx.1_Missense_Mutation_p.A53V|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	375	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					CTGCTGCATGCGGCCACTCGG	0.672000										Multiple Myeloma(12;0.14)			8	25					0	0	1	0	0	
C12orf35	55196	broad.mit.edu	37	12	32136019	32136019	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:32136019C>T	uc001rks.2	+	4	2544	c.2130C>T	c.(2128-2130)AAC>AAT	p.N710N		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	710										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			AGCCTGCTAACATCCACGTTA	0.393000													25	63					0	0	1	0	0	
BICD1	636	broad.mit.edu	37	12	32480705	32480705	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:32480705A>G	uc001rku.2	+	5	1397	c.1316A>G	c.(1315-1317)GAG>GGG	p.E439G	BICD1_uc001rkv.2_Missense_Mutation_p.E439G|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	439	Potential.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			GCCTTAAAGGAGAAATATAAT	0.393000													17	35					0	0	1	0	0	
DNM1L	10059	broad.mit.edu	37	12	32893450	32893450	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:32893450C>T	uc001rld.2	+	18	2153	c.1992C>T	c.(1990-1992)GAC>GAT	p.D664D	DNM1L_uc001rle.2_Silent_p.D638D|DNM1L_uc001rlf.2_Silent_p.D627D|DNM1L_uc010skh.1_Silent_p.D730D|DNM1L_uc001rlg.2_Silent_p.D719D|DNM1L_uc001rlh.2_Silent_p.D706D|DNM1L_uc010ski.1_Silent_p.D461D	NM_012062	NP_036192	O00429	DNM1L_HUMAN	dynamin 1-like isoform 1	664	GED.|Interaction with GSK3B.				cellular component disassembly involved in apoptosis|mitochondrial fragmentation involved in apoptosis|mitochondrial membrane organization|positive regulation of mitochondrial fission	cis-Golgi network|cytosol|endomembrane system|endoplasmic reticulum|mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2	Lung NSC(5;2.15e-06)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ATATTCAAGACAGGTTAGTAT	0.313000													11	28					0	0	1	0	0	
LRRK2	120892	broad.mit.edu	37	12	40704239	40704239	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:40704239G>A	uc001rmg.3	+	31	4445	c.4324G>A	c.(4324-4326)GCT>ACT	p.A1442T	LRRK2_uc009zjw.2_Missense_Mutation_p.A280T|LRRK2_uc001rmi.2_Missense_Mutation_p.A275T	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1442	Roc.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				CCAGGCTCGCGCTTCTTCTTC	0.463000													34	58					0	0	1	0	0	
SLC38A4	55089	broad.mit.edu	37	12	47173580	47173580	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:47173580G>A	uc001rpi.2	-	9	1040	c.641C>T	c.(640-642)TCG>TTG	p.S214L	SLC38A4_uc001rpj.2_Missense_Mutation_p.S214L|SLC38A4_uc009zkl.2_Missense_Mutation_p.S214L	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	214	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TTTAAGGAGCGAAAGTGGAAG	0.308000													16	44					0	0	1	0	0	
FAM113B	91523	broad.mit.edu	37	12	47629705	47629705	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:47629705G>A	uc001rpn.2	+	4	1590	c.859G>A	c.(859-861)GCC>ACC	p.A287T	FAM113B_uc010slj.1_Missense_Mutation_p.A167T|FAM113B_uc001rpq.2_Missense_Mutation_p.A287T	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	287	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					AAATCAcccggccttacctct	0.299000													3	10					0	0	1	0	0	
MLL2	8085	broad.mit.edu	37	12	49415900	49415900	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:49415900C>T	uc001rta.3	-	53	16447	c.16447G>A	c.(16447-16449)GCC>ACC	p.A5483T		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5483	SET.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ACGACTTCGGCCACACAGTTA	0.498000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			25	111					0	0	1	0	0	
MLL2	8085	broad.mit.edu	37	12	49421039	49421039	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:49421039G>A	uc001rta.3	-	48	14710	c.14710C>T	c.(14710-14712)CGA>TGA	p.R4904*		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4904					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GAGAGCTGTCGCACATCCAGA	0.612000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			38	69					0	0	1	0	0	
PRPH	5630	broad.mit.edu	37	12	49689013	49689013	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:49689013C>T	uc001rtu.2	+	1	105	c.30C>T	c.(28-30)GCC>GCT	p.A10A		NM_006262	NP_006253	P41219	PERI_HUMAN	peripherin	10	Head.						structural molecule activity				0						GCCTCCGGGCCGGCTTCAGCT	0.692000													5	8					0	0	1	0	0	
SPATS2	65244	broad.mit.edu	37	12	49883260	49883260	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:49883260C>T	uc001rud.2	+	5	1107	c.118C>T	c.(118-120)CGT>TGT	p.R40C	SPATS2_uc001rue.2_RNA|SPATS2_uc009zli.1_Missense_Mutation_p.R40C|SPATS2_uc001ruf.2_Missense_Mutation_p.R40C|SPATS2_uc001rug.2_Missense_Mutation_p.R40C	NM_023071	NP_075559	Q86XZ4	SPAS2_HUMAN	spermatogenesis associated, serine-rich 2	40						cytoplasm				breast(1)	1						AAATGCGGTACGTGCAATAGT	0.378000													19	33					0	0	1	0	0	
KRT84	3890	broad.mit.edu	37	12	52779183	52779183	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:52779183G>A	uc001sah.1	-	1	235	c.187C>T	c.(187-189)CCC>TCC	p.P63S		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	63	Head.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCTATCCGGGGTGAGTACGAT	0.597000													20	40					0	0	1	0	0	
KRT5	3852	broad.mit.edu	37	12	52912851	52912851	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:52912851G>A	uc001san.2	-	2	812	c.649C>T	c.(649-651)CCG>TCG	p.P217S	KRT5_uc009zmh.2_Missense_Mutation_p.P217S	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	217	Rod.|Linker 1.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCGAACAACGGCTCCAGGTTC	0.602000													36	75					0	0	1	0	0	
ESPL1	9700	broad.mit.edu	37	12	53685587	53685587	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:53685587A>G	uc001sck.2	+	26	5725	c.5634A>G	c.(5632-5634)GGA>GGG	p.G1878G	ESPL1_uc001scj.2_Silent_p.G1553G	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1878					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						AGGCAGTAGGACGTCTACAGG	0.612000													32	71					0	0	1	0	0	
HOXC5	3222	broad.mit.edu	37	12	54428098	54428098	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:54428098G>A	uc001sew.2	+	2	566	c.491G>A	c.(490-492)CGC>CAC	p.R164H	HOXC5_uc001set.2_RNA|HOXC4_uc001seu.2_Intron	NM_018953	NP_061826	Q00444	HXC5_HUMAN	homeobox C5	164	Homeobox.				regulation of transcription from RNA polymerase II promoter	cell junction|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AGTTACACGCGCTACCAGACT	0.562000													29	66					0	0	1	0	0	
NFE2	4778	broad.mit.edu	37	12	54686848	54686848	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:54686848G>A	uc009znk.2	-	2	942	c.432C>T	c.(430-432)TCC>TCT	p.S144S	NFE2_uc001sfq.2_Silent_p.S144S|NFE2_uc001sfr.3_Silent_p.S144S|NFE2_uc009znl.2_Silent_p.S144S	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	144	Transactivation domain.				blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						ATCCTGAGTCGGATTCTGGGT	0.587000													25	89					0	0	1	0	0	
LRP1	4035	broad.mit.edu	37	12	57571281	57571281	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:57571281G>A	uc001snd.2	+	26	4734	c.4268G>A	c.(4267-4269)CGC>CAC	p.R1423H		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1423	LDL-receptor class B 10.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity	p.R1423C(1)		ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GGGGCTGGGCGCCGCACCGTG	0.667000													11	31					0	0	1	0	0	
LRP1	4035	broad.mit.edu	37	12	57573274	57573274	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:57573274T>C	uc001snd.2	+	29	5367	c.4901T>C	c.(4900-4902)GTG>GCG	p.V1634A		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1634	LDL-receptor class B 13.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGGTCTGACGTGCGGACACAG	0.587000													9	26					0	0	1	0	0	
MARS	4141	broad.mit.edu	37	12	57906729	57906729	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:57906729T>C	uc001sog.2	+	15	1972	c.1949T>C	c.(1948-1950)CTG>CCG	p.L650P	MARS_uc001sof.1_RNA|MARS_uc010srq.1_Missense_Mutation_p.L416P|MARS_uc001soh.1_Missense_Mutation_p.L45P	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	650					methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	CTTAACAACCTGGGCAACTTC	0.527000													30	86					0	0	1	0	0	
B4GALNT1	2583	broad.mit.edu	37	12	58022542	58022542	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:58022542C>T	uc001spg.1	-	8	1388	c.956G>A	c.(955-957)CGC>CAC	p.R319H	B4GALNT1_uc010sru.1_Missense_Mutation_p.R264H|B4GALNT1_uc010srv.1_Missense_Mutation_p.R286H	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	319	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			GCCACTAACGCGCTCTGGCTT	0.607000													7	38					0	0	1	0	0	
PPM1H	57460	broad.mit.edu	37	12	63042385	63042385	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:63042385G>A	uc001srk.3	-	10	1578	c.1429C>T	c.(1429-1431)CGT>TGT	p.R477C		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	477	PP2C-like.						phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		CCCCGGGCACGCATCACCAGG	0.527000													12	38					0	0	1	0	0	
SRGAP1	57522	broad.mit.edu	37	12	64458914	64458914	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:64458914C>T	uc010ssp.1	+	8	1096	c.1040C>T	c.(1039-1041)GCC>GTC	p.A347V	SRGAP1_uc001srt.2_Missense_Mutation_p.A347V|SRGAP1_uc001srv.2_Missense_Mutation_p.A307V	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	347					axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		CAGGTCAGTGCCCAGCAGCCA	0.532000													7	13					0	0	1	0	0	
C12orf66	144577	broad.mit.edu	37	12	64609707	64609707	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:64609707C>T	uc001srw.3	-	2	331	c.272G>A	c.(271-273)CGC>CAC	p.R91H	C12orf66_uc009zql.2_Missense_Mutation_p.R38H	NM_152440	NP_689653	Q96MD2	CL066_HUMAN	hypothetical protein LOC144577	91										ovary(1)	1						ATAGATGGTGCGGATGGAATC	0.507000													4	22					0	0	1	0	0	
IRAK3	11213	broad.mit.edu	37	12	66641588	66641588	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:66641588T>C	uc001sth.2	+	12	1530	c.1428T>C	c.(1426-1428)AGT>AGC	p.S476S	IRAK3_uc010ssy.1_Silent_p.S415S	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	476					interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		ATGTACCAAGTATTCCAGTGG	0.413000													29	57					0	0	1	0	0	
GRIP1	23426	broad.mit.edu	37	12	66773080	66773080	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:66773080C>A	uc001stk.2	-	19	2686	c.2445G>T	c.(2443-2445)TGG>TGT	p.W815C	GRIP1_uc010sta.1_Missense_Mutation_p.W759C|GRIP1_uc001stj.2_Missense_Mutation_p.W597C|GRIP1_uc001stl.1_Missense_Mutation_p.W707C|GRIP1_uc001stm.2_Missense_Mutation_p.W815C	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	867					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		TGGACCGGTCCCAGTCTTCAT	0.517000													52	109					9.87224e-16	1.05663e-15	1	1	0	
LYZ	4069	broad.mit.edu	37	12	69743886	69743886	+	Splice_Site	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:69743886A>G	uc001suw.2	+	2	192	c.137_splice	c.e2-2	p.W46_splice		NM_000239	NP_000230	P61626	LYSC_HUMAN	lysozyme precursor						cell wall macromolecule catabolic process|cytolysis|defense response to bacterium|inflammatory response	extracellular space	lysozyme activity|protein binding				0	all_epithelial(5;2.98e-35)|Lung NSC(4;9.93e-33)|all_lung(4;5.66e-31)|Breast(13;2.56e-06)|Esophageal squamous(21;0.187)		Epithelial(6;8.26e-19)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00503)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			AGTTCTTTTCAGGGATGTGTT	0.348000													16	56					0	0	1	0	0	
ZFC3H1	196441	broad.mit.edu	37	12	72027125	72027125	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:72027125A>G	uc001swo.2	-	13	2963	c.2604T>C	c.(2602-2604)ATT>ATC	p.I868I		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	868	Potential.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						TAAGTTTTGTAATCTTTGCTT	0.289000													6	14					0	0	1	0	0	
SYT1	6857	broad.mit.edu	37	12	79693174	79693174	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:79693174C>T	uc001sys.2	+	9	1324	c.653C>T	c.(652-654)TCG>TTG	p.S218L	SYT1_uc001syt.2_Missense_Mutation_p.S218L|SYT1_uc001syu.2_Missense_Mutation_p.S215L|SYT1_uc001syv.2_Missense_Mutation_p.S218L	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	218	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						GTACCATACTCGGAATTGGGT	0.343000													38	104					0	0	1	0	0	
C12orf26	84190	broad.mit.edu	37	12	82752388	82752388	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:82752388C>T	uc001szq.2	+	1	65	c.44C>T	c.(43-45)ACG>ATG	p.T15M	CCDC59_uc001szp.3_5'Flank	NM_032230	NP_115606	Q8N6Q8	CL026_HUMAN	hypothetical protein LOC84190	15											0						GACCTGCCCACGCTGCGTGCC	0.622000											OREG0022008	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	30					0	0	1	0	0	
TMTC3	160418	broad.mit.edu	37	12	88553984	88553984	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:88553984A>G	uc001tau.2	+	5	822	c.602A>G	c.(601-603)TAT>TGT	p.Y201C	TMTC3_uc009zsm.2_RNA	NM_181783	NP_861448	Q6ZXV5	TMTC3_HUMAN	transmembrane and tetratricopeptide repeat	201	Helical; (Potential).			Y -> C (in Ref. 3; BAC11325).		integral to membrane	binding			skin(1)	1						TGCTGTGTGTATGAAGTGTTT	0.294000													6	128					0	0	1	0	0	
C12orf12	196477	broad.mit.edu	37	12	91348142	91348142	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:91348142G>A	uc001tbj.2	-	1	812	c.378C>T	c.(376-378)AGC>AGT	p.S126S		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	126										central_nervous_system(1)|pancreas(1)	2						TCCAGGACCCGCTCCAGCAGG	0.677000													9	26					0	0	1	0	0	
DCN	1634	broad.mit.edu	37	12	91572154	91572154	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:91572154T>C	uc001tbs.2	-	1	270	c.176A>G	c.(175-177)CAA>CGA	p.Q59R	DCN_uc001tbo.2_Missense_Mutation_p.Q59R|DCN_uc001tbp.2_Missense_Mutation_p.Q59R|DCN_uc001tbq.2_Missense_Mutation_p.Q59R|DCN_uc001tbr.2_Missense_Mutation_p.Q59R|DCN_uc001tbt.2_Missense_Mutation_p.Q59R|DCN_uc001tbu.2_Missense_Mutation_p.Q59R	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	59	Cys-rich.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						AAGATGGCATTGACAGCGGAA	0.507000											OREG0022021	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	85					0	0	1	0	0	
USP44	84101	broad.mit.edu	37	12	95926869	95926869	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:95926869C>T	uc001teg.2	-	2	1308	c.1164G>A	c.(1162-1164)TTG>TTA	p.L388L	USP44_uc001teh.2_Silent_p.L388L|USP44_uc009zte.2_Silent_p.L385L	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	388					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						TGACTTGGAACAAAGTATGCA	0.453000													30	86					0	0	1	0	0	
NR1H4	9971	broad.mit.edu	37	12	100930806	100930806	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:100930806A>C	uc001tht.1	+	6	970	c.942A>C	c.(940-942)GAA>GAC	p.E314D	NR1H4_uc001thp.1_Missense_Mutation_p.E300D|NR1H4_uc001thq.1_Missense_Mutation_p.E304D|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.E304D|NR1H4_uc010svk.1_Missense_Mutation_p.E253D|NR1H4_uc001ths.1_Missense_Mutation_p.E310D	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	314	Ligand-binding.				bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TTCTTGTAGAATTCACAAAAA	0.189000													63	116					0	0	1	0	0	
UTP20	27340	broad.mit.edu	37	12	101720873	101720873	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:101720873G>A	uc001tia.1	+	26	3212	c.3056G>A	c.(3055-3057)CGA>CAA	p.R1019Q		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1019					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TTGTATGGGCGAATGAAGAAT	0.438000													22	46					0	0	1	0	0	
TCP11L2	255394	broad.mit.edu	37	12	106729456	106729456	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:106729456T>C	uc001tln.2	+	7	986	c.812T>C	c.(811-813)GTA>GCA	p.V271A		NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	271										ovary(3)	3						AAAGAATCTGTAAATGAAGAA	0.403000													14	33					0	0	1	0	0	
POLR3B	55703	broad.mit.edu	37	12	106890644	106890644	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:106890644C>T	uc001tlp.2	+	25	3154	c.2932C>T	c.(2932-2934)CGC>TGC	p.R978C	POLR3B_uc001tlq.2_Missense_Mutation_p.R920C	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	978				R -> C (in Ref. 2; BAA91527).	innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						GGACCTCGTTCGCCATGGTTA	0.488000													31	53					0	0	1	0	0	
CRY1	1407	broad.mit.edu	37	12	107391121	107391121	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:107391121G>A	uc001tmi.3	-	10	2395	c.1536C>T	c.(1534-1536)GGC>GGT	p.G512G		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	512					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						ATCCCATGAAGCCTCCATTCC	0.343000													65	151					0	0	1	0	0	
CMKLR1	1240	broad.mit.edu	37	12	108686070	108686070	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:108686070G>A	uc009zuw.2	-	3	861	c.670C>T	c.(670-672)CGC>TGC	p.R224C	CMKLR1_uc001tmw.2_Missense_Mutation_p.R224C|CMKLR1_uc001tmv.2_Missense_Mutation_p.R222C|CMKLR1_uc009zuv.2_Missense_Mutation_p.R224C	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	224	Extracellular (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						CAGAGGAAGCGGGTGACAGTC	0.582000													10	29					0	0	1	0	0	
FICD	11153	broad.mit.edu	37	12	108912785	108912785	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:108912785G>A	uc001tmx.1	+	3	1056	c.910G>A	c.(910-912)GTG>ATG	p.V304M		NM_007076	NP_009007	Q9BVA6	FICD_HUMAN	Huntingtin interacting protein E	304	Fido.				negative regulation of Rho GTPase activity	integral to membrane	binding|protein adenylyltransferase activity				0						CGTGGACCCCGTGGAAGCCGG	0.592000													16	28					0	0	1	0	0	
HVCN1	84329	broad.mit.edu	37	12	111088053	111088053	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:111088053G>A	uc001trs.1	-	7	841	c.676C>T	c.(676-678)CGG>TGG	p.R226W	HVCN1_uc001trq.1_Missense_Mutation_p.R226W|HVCN1_uc001trt.1_Missense_Mutation_p.R226W|HVCN1_uc010syd.1_Missense_Mutation_p.R206W	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	226	Cytoplasmic (Potential).|Potential.				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						AAGAGTTGCCGTTCTGAACGT	0.398000													20	44					0	0	1	0	0	
HVCN1	84329	broad.mit.edu	37	12	111099069	111099069	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:111099069G>A	uc001trs.1	-	4	371	c.206C>T	c.(205-207)GCT>GTT	p.A69V	HVCN1_uc001trq.1_Missense_Mutation_p.A69V|HVCN1_uc001trt.1_Missense_Mutation_p.A69V|HVCN1_uc010syd.1_Missense_Mutation_p.A49V	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	69	Cytoplasmic (Potential).				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						AGGGGCTGCAGCTCTGCCTTC	0.517000													13	39					0	0	1	0	0	
CCDC63	160762	broad.mit.edu	37	12	111317756	111317756	+	Missense_Mutation	SNP	G	A	A	rs142788118		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:111317756G>A	uc001trv.1	+	6	731	c.536G>A	c.(535-537)CGG>CAG	p.R179Q	CCDC63_uc009zvt.1_Intron|CCDC63_uc010sye.1_Missense_Mutation_p.R139Q|CCDC63_uc001trw.1_Missense_Mutation_p.R94Q	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	179	Potential.									skin(6)|ovary(1)|pancreas(1)	8						GCCAAGCTCCGGAAGGAGATT	0.448000													61	104					0	0	1	0	0	
OAS2	4939	broad.mit.edu	37	12	113416586	113416586	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:113416586C>T	uc001tuj.2	+	1	313	c.173C>T	c.(172-174)GCC>GTC	p.A58V	OAS2_uc001tuh.2_Missense_Mutation_p.A58V|OAS2_uc001tui.1_Missense_Mutation_p.A58V	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	58	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						CAGGGAGTGGCCATAGTGAGT	0.587000													6	16					0	0	1	0	0	
DDX54	79039	broad.mit.edu	37	12	113617042	113617042	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:113617042C>T	uc001tup.2	-	4	498	c.470G>A	c.(469-471)CGG>CAG	p.R157Q	DDX54_uc001tuq.3_Missense_Mutation_p.R157Q	NM_024072	NP_076977	Q8TDD1	DDX54_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	157	Helicase ATP-binding.				estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nucleolus	ATP binding|ATP-dependent RNA helicase activity|estrogen receptor binding|RNA binding|transcription corepressor activity			skin(2)|central_nervous_system(1)	3						GGTCTTGAGCCGCTCGAACAT	0.647000													9	17					0	0	1	0	0	
FBXO21	23014	broad.mit.edu	37	12	117604703	117604703	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:117604703C>T	uc001twk.2	-	8	1232	c.1193G>A	c.(1192-1194)CGG>CAG	p.R398Q	FBXO21_uc001twj.2_Missense_Mutation_p.R398Q|FBXO21_uc009zwq.2_Intron|FBXO21_uc001twl.1_Missense_Mutation_p.R11Q	NM_033624	NP_296373	O94952	FBX21_HUMAN	F-box only protein 21 isoform 1	398					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			kidney(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0291)		AAAACCTTACCGCTTCCCCAG	0.458000													45	75					0	0	1	0	0	
NOS1	4842	broad.mit.edu	37	12	117669898	117669898	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:117669898G>A	uc001twm.1	-	22	3960	c.3274C>T	c.(3274-3276)CCC>TCC	p.P1092S		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1092	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATGGTGCAGGGCGGGAGGCGG	0.597000													4	19					0	0	1	0	0	
TAOK3	51347	broad.mit.edu	37	12	118598098	118598098	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:118598098T>C	uc001twx.2	-	19	2500	c.2205A>G	c.(2203-2205)AAA>AAG	p.K735K	TAOK3_uc001twv.2_Silent_p.K275K|TAOK3_uc001tww.2_Silent_p.K565K|TAOK3_uc001twy.3_Silent_p.K735K	NM_016281	NP_057365	Q9H2K8	TAOK3_HUMAN	TAO kinase 3	735					MAPKKK cascade|negative regulation of JNK cascade|positive regulation of JNK cascade|protein autophosphorylation	mitochondrion|plasma membrane	ATP binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCTTGAGTGCTTTATACTGTT	0.373000													46	113					0	0	1	0	0	
GCN1L1	10985	broad.mit.edu	37	12	120582472	120582472	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:120582472C>T	uc001txo.2	-	41	5336	c.5323G>A	c.(5323-5325)GTG>ATG	p.V1775M		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1775	HEAT 13.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ATGGGCCCCACATAAGGAGTA	0.512000													33	80					0	0	1	0	0	
PXN	5829	broad.mit.edu	37	12	120660747	120660747	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:120660747G>T	uc001txt.2	-	4	543	c.412C>A	c.(412-414)CTG>ATG	p.L138M	PXN_uc001txv.2_Missense_Mutation_p.L5M|PXN_uc001txx.2_Missense_Mutation_p.L5M|PXN_uc001txy.2_Missense_Mutation_p.L138M|PXN_uc001txz.2_RNA|uc001tya.2_5'Flank	NM_001080855	NP_001074324	P49023	PAXI_HUMAN	paxillin isoform 1	138					cell junction assembly|cell-matrix adhesion|cellular response to reactive oxygen species|epidermal growth factor receptor signaling pathway|growth hormone receptor signaling pathway|muscle contraction|signal complex assembly	cytoplasm|focal adhesion|lamellipodium|microtubule associated complex	beta-catenin binding|vinculin binding|zinc ion binding			ovary(1)|breast(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTGCTGCCCAGGGACGTGCTC	0.562000													6	29					1	1	1	1	0	
HIP1R	9026	broad.mit.edu	37	12	123339488	123339488	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:123339488G>A	uc001udj.1	+	9	814	c.755G>A	c.(754-756)CGG>CAG	p.R252Q	HIP1R_uc001udg.1_Missense_Mutation_p.R240Q|HIP1R_uc001udi.1_Missense_Mutation_p.R252Q|HIP1R_uc001udk.1_5'Flank	NM_003959	NP_003950	O75146	HIP1R_HUMAN	huntingtin interacting protein-1-related	252					receptor-mediated endocytosis	clathrin coated vesicle membrane|coated pit|perinuclear region of cytoplasm	actin binding|phosphatidylinositol binding			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;4.6e-05)|Epithelial(86;0.000119)|BRCA - Breast invasive adenocarcinoma(302;0.2)		CACAGGGACCGGTTCCACGAG	0.637000													22	51					0	0	1	0	0	
DHX37	57647	broad.mit.edu	37	12	125438496	125438496	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:125438496G>A	uc001ugy.2	-	20	2724	c.2625C>T	c.(2623-2625)TGC>TGT	p.C875C	DHX37_uc001ugz.1_5'Flank	NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	875							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		CGTTGGCTTCGCAAAACTGGG	0.672000													7	14					0	0	1	0	0	
EP400	57634	broad.mit.edu	37	12	132505628	132505628	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:132505628A>G	uc001ujn.2	+	22	4487	c.4452A>G	c.(4450-4452)GCA>GCG	p.A1484A	EP400_uc001ujl.2_Silent_p.A1483A|EP400_uc001ujm.2_Intron	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1520	Poly-Ala.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		TTGCAGCAGCAGCAGCCCCGT	0.473000													7	27					0	0	1	0	0	
EP400	57634	broad.mit.edu	37	12	132546816	132546816	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:132546816C>T	uc001ujn.2	+	45	8081	c.8046C>T	c.(8044-8046)AAC>AAT	p.N2682N	EP400_uc001ujl.2_Silent_p.N2681N|EP400_uc001ujm.2_Silent_p.N2601N|EP400_uc001ujp.2_5'Flank	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2718	Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		TCACTACCAACCTGACCCCAG	0.642000													6	46					0	0	1	0	0	
ANKLE2	23141	broad.mit.edu	37	12	133306760	133306760	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:133306760G>A	uc001ukx.2	-	11	2055	c.1988C>T	c.(1987-1989)CCG>CTG	p.P663L	ANKLE2_uc009zyw.1_Missense_Mutation_p.P18L	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	663						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		GACTGTGGGCGGGCTGTTATT	0.537000													21	58					0	0	1	0	0	
LOC284232	284232	broad.mit.edu	37	13	19419871	19419871	+	RNA	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:19419871A>T	uc010tcj.1	-	1		c.26239T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AGAAACTTAAATTTTCATATA	0.333000													21	70					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23911987	23911987	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:23911987T>C	uc001uon.2	-	10	6617	c.6028A>G	c.(6028-6030)AAG>GAG	p.K2010E	SACS_uc001uoo.2_Missense_Mutation_p.K1863E|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2010					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AAAAATATCTTGAAGGCTGCT	0.383000													11	30					0	0	1	0	0	
MIPEP	4285	broad.mit.edu	37	13	24460522	24460522	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:24460522C>T	uc001uox.3	-	2	413	c.313G>A	c.(313-315)GTG>ATG	p.V105M	PCOTH_uc001uoy.2_5'Flank	NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	105					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		AAGATCAGCACGGTCTGGGGC	0.493000													23	43					0	0	1	0	0	
CENPJ	55835	broad.mit.edu	37	13	25480581	25480581	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:25480581G>A	uc001upt.3	-	7	1848	c.1595C>T	c.(1594-1596)CCG>CTG	p.P532L	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA|CENPJ_uc001upu.2_5'Flank	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	532					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		CCGGCTGGCCGGCCCTGTTGA	0.463000													28	63					0	0	1	0	0	
ATP8A2	51761	broad.mit.edu	37	13	26343303	26343303	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:26343303G>A	uc001uqk.2	+	26	2646	c.2504G>A	c.(2503-2505)GGT>GAT	p.G835D	ATP8A2_uc010tdi.1_Missense_Mutation_p.G795D|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.G385D	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	795	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		GCCCACGTGGGTGTGGGAATC	0.592000													26	59					0	0	1	0	0	
LNX2	222484	broad.mit.edu	37	13	28122585	28122585	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:28122585C>T	uc001url.3	-	10	2269	c.1960G>A	c.(1960-1962)GTA>ATA	p.V654I		NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	654	PDZ 4.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		AGCCCATTTACGGCCACAATC	0.438000													7	13					0	0	1	0	0	
GSX1	219409	broad.mit.edu	37	13	28367782	28367782	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:28367782C>T	uc001urr.1	+	2	540	c.492C>T	c.(490-492)CGC>CGT	p.R164R		NM_145657	NP_663632	Q9H4S2	GSX1_HUMAN	GS homeobox 1	164	Homeobox.				positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung SC(185;0.0161)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0402)|all cancers(112;0.0404)|OV - Ovarian serous cystadenocarcinoma(117;0.197)		AGCTGGAGCGCGAGTTCGCTT	0.572000													19	35					0	0	1	0	0	
FLT3	2322	broad.mit.edu	37	13	28608271	28608271	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:28608271T>C	uc001urw.2	-	14	1867	c.1785A>G	c.(1783-1785)AGA>AGG	p.R595R	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.R595R	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	595	Cytoplasmic (Potential).|Important for normal regulation of the kinase activity and for maintaining the kinase in an inactive state in the absence of bound ligand.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity	p.F594_R595ins12(2)|p.R595_E596insDFYVDFR(1)|p.F594_R595ins15(1)|p.F594_R595ins14(1)|p.E588_R595>PPGQY(1)|p.F590_E596>LG(1)|p.R595_E596ins12(1)|p.R595_E596ins13(1)|p.R595_E596insNEYFYVDFR(1)|p.R595_E596ins17(1)|p.R595_E596insDNEYFYVDFR(1)|p.R595_E596insEDREHHVDFR(1)		haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	ATTCATATTCTCTGAAATCAA	0.378000			Mis|O		AML|ALL								14	44					0	0	1	0	0	
FLT3	2322	broad.mit.edu	37	13	28626756	28626756	+	Silent	SNP	G	A	A	rs56033040		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:28626756G>A	uc001urw.2	-	5	622	c.540C>T	c.(538-540)GAC>GAT	p.D180D	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.D180D	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	180	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AGACCAGGGCGTCCTGGTTTT	0.403000			Mis|O		AML|ALL								18	55					0	0	1	0	0	
FLT1	2321	broad.mit.edu	37	13	28959039	28959039	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:28959039T>A	uc001usb.3	-	14	2384	c.2099A>T	c.(2098-2100)AAA>ATA	p.K700I	FLT1_uc010aar.1_Missense_Mutation_p.K700I	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	700	Ig-like C2-type 7.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TTGTTGTATTTTGTGGTTGTT	0.443000													22	65					0	0	1	0	0	
MTUS2	23281	broad.mit.edu	37	13	29599849	29599849	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:29599849G>T	uc001usl.3	+	1	1102	c.1044G>T	c.(1042-1044)GAG>GAT	p.E348D		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	338						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						ACAAGGAAGAGAATCTGTCAG	0.562000													12	28					9.31168e-06	9.533e-06	1	1	0	
C13orf33	84935	broad.mit.edu	37	13	31495959	31495959	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:31495959C>T	uc001uth.3	+	4	1104	c.763C>T	c.(763-765)CGA>TGA	p.R255*	uc001utg.1_Intron	NM_032849	NP_116238	Q5VYS4	CM033_HUMAN	hypothetical protein LOC84935	255											0		Lung SC(185;0.0281)		all cancers(112;0.00914)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.0559)|GBM - Glioblastoma multiforme(144;0.244)		TTTCTCTGACCGAAAGTTCAG	0.363000													18	50					0	0	1	0	0	
HSPH1	10808	broad.mit.edu	37	13	31711624	31711624	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:31711624G>A	uc001utj.2	-	18	2806	c.2408C>T	c.(2407-2409)CCG>CTG	p.P803L	HSPH1_uc001utk.2_Missense_Mutation_p.P759L|HSPH1_uc010aaw.2_Missense_Mutation_p.P762L|HSPH1_uc001utl.2_Missense_Mutation_p.P805L|HSPH1_uc010tds.1_Missense_Mutation_p.P727L	NM_006644	NP_006635	Q92598	HS105_HUMAN	heat shock 105kD	803					positive regulation of MHC class I biosynthetic process|positive regulation of NK T cell activation|response to unfolded protein	cytoplasm|extracellular region	ATP binding				0		Lung SC(185;0.0257)		all cancers(112;0.00385)|Epithelial(112;0.0328)|OV - Ovarian serous cystadenocarcinoma(117;0.0375)|GBM - Glioblastoma multiforme(144;0.125)		TTTTGGTTTCGGTTGTGTTAC	0.343000													26	48					0	0	1	0	0	
HSPH1	10808	broad.mit.edu	37	13	31732954	31732954	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:31732954C>T	uc001utj.2	-	2	552	c.154G>A	c.(154-156)GCC>ACC	p.A52T	HSPH1_uc001utk.2_Missense_Mutation_p.A52T|HSPH1_uc010aaw.2_Missense_Mutation_p.A52T|HSPH1_uc001utl.2_Missense_Mutation_p.A54T|HSPH1_uc010tds.1_Missense_Mutation_p.A54T|HSPH1_uc010tdt.1_RNA|HSPH1_uc010aax.1_Missense_Mutation_p.A54T|HSPH1_uc010aay.1_Missense_Mutation_p.A54T	NM_006644	NP_006635	Q92598	HS105_HUMAN	heat shock 105kD	52					positive regulation of MHC class I biosynthetic process|positive regulation of NK T cell activation|response to unfolded protein	cytoplasm|extracellular region	ATP binding				0		Lung SC(185;0.0257)		all cancers(112;0.00385)|Epithelial(112;0.0328)|OV - Ovarian serous cystadenocarcinoma(117;0.0375)|GBM - Glioblastoma multiforme(144;0.125)		TGATTTTTGGCTGCAACTCCG	0.303000													19	51					0	0	1	0	0	
MAB21L1	4081	broad.mit.edu	37	13	36049497	36049497	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:36049497C>T	uc001uvc.2	-	1	1336	c.779G>A	c.(778-780)CGT>CAT	p.R260H	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	260					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		TTCAAGGTGACGATCCCTTAA	0.557000													25	54					0	0	1	0	0	
FREM2	341640	broad.mit.edu	37	13	39262698	39262698	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:39262698G>A	uc001uwv.2	+	1	1526	c.1217G>A	c.(1216-1218)CGC>CAC	p.R406H		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	406	CSPG 1.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GACCAGGAGCGCCTCTTTGAA	0.547000													17	49					0	0	1	0	0	
FOXO1	2308	broad.mit.edu	37	13	41134254	41134254	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:41134254C>T	uc001uxl.3	-	2	1759	c.1374G>A	c.(1372-1374)GCG>GCA	p.A458A	FOXO1_uc010acc.1_Silent_p.A273A	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	458					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		AGAGTCCAGGCGCACAGTTAT	0.502000													17	32					0	0	1	0	0	
AKAP11	11215	broad.mit.edu	37	13	42871202	42871202	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:42871202T>C	uc001uys.1	+	6	410	c.235T>C	c.(235-237)TTG>CTG	p.L79L		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	79					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TGCAGTTTCTTTGGAACTTCC	0.299000													28	79					0	0	1	0	0	
ZC3H13	23091	broad.mit.edu	37	13	46544501	46544501	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:46544501A>G	uc010tfw.1	-	12	2574	c.2568T>C	c.(2566-2568)GAT>GAC	p.D856D	ZC3H13_uc001vaq.2_5'Flank|ZC3H13_uc001vas.1_Silent_p.D856D|ZC3H13_uc001vat.1_Silent_p.D856D	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	856							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		GCTTACTTTTATCATCTCCAC	0.433000													50	94					0	0	1	0	0	
SETDB2	83852	broad.mit.edu	37	13	50034245	50034245	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:50034245G>A	uc001vcz.2	+	3	925	c.19G>A	c.(19-21)GAT>AAT	p.D7N	SETDB2_uc010adg.2_5'UTR|SETDB2_uc001vcy.3_Missense_Mutation_p.D7N|SETDB2_uc010adh.2_Missense_Mutation_p.D7N|SETDB2_uc001vda.2_Missense_Mutation_p.D7N	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	7					cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		TATTTTAGGCGATGCAAAAAC	0.313000													24	79					0	0	1	0	0	
PCDH8	5100	broad.mit.edu	37	13	53420348	53420348	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:53420348A>G	uc001vhi.2	-	1	2427	c.2224T>C	c.(2224-2226)TCG>CCG	p.S742P	PCDH8_uc001vhj.2_Missense_Mutation_p.S742P	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	742	Extracellular (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		TGCAGCACCGACCCGGACACC	0.711000													11	19					0	0	1	0	0	
PCDH17	27253	broad.mit.edu	37	13	58208709	58208709	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:58208709G>A	uc001vhq.1	+	1	2921	c.2029G>A	c.(2029-2031)GCC>ACC	p.A677T	PCDH17_uc010aec.1_Missense_Mutation_p.A677T	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	677	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GTCCGCAGTGGCCAAGCTCAT	0.652000													29	64					0	0	1	0	0	
PCDH9	5101	broad.mit.edu	37	13	67801602	67801602	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:67801602G>A	uc001vik.2	-	2	1663	c.971C>T	c.(970-972)GCC>GTC	p.A324V	PCDH9_uc001vil.2_Missense_Mutation_p.A324V|PCDH9_uc010thl.1_Missense_Mutation_p.A324V|PCDH9_uc001vin.3_Missense_Mutation_p.A324V	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	324	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		TTTGTGAATGGCTGTCTCCTC	0.478000													56	98					0	0	1	0	0	
FBXL3	26224	broad.mit.edu	37	13	77589682	77589682	+	Missense_Mutation	SNP	C	T	T	rs144677112	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:77589682C>T	uc001vkd.2	-	4	876	c.505G>A	c.(505-507)GTA>ATA	p.V169I		NM_012158	NP_036290	Q9UKT7	FBXL3_HUMAN	F-box and leucine-rich repeat protein 3	169					regulation of circadian rhythm|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.218)		GBM - Glioblastoma multiforme(99;0.0521)		TTGGAGTTTACGAACACAACT	0.343000													22	61					0	0	1	0	0	
SLITRK5	26050	broad.mit.edu	37	13	88330296	88330296	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:88330296G>A	uc001vln.2	+	2	2872	c.2653G>A	c.(2653-2655)GCT>ACT	p.A885T	SLITRK5_uc010tic.1_Missense_Mutation_p.A644T	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	885	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					GTGCAGCCCCGCTGCTTACAC	0.592000													22	59					0	0	1	0	0	
HS6ST3	266722	broad.mit.edu	37	13	96743260	96743260	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:96743260G>A	uc001vmw.2	+	1	168	c.144G>A	c.(142-144)CCG>CCA	p.P48P		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	48	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					aggccggcccgcccgccgtcc	0.224000													4	3					0	0	1	0	0	
KDELC1	79070	broad.mit.edu	37	13	103443278	103443278	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:103443278T>C	uc001vpq.3	-	6	1440	c.1056A>G	c.(1054-1056)AAA>AAG	p.K352K	KDELC1_uc001vpr.3_Silent_p.K133K	NM_024089	NP_076994	Q6UW63	KDEL1_HUMAN	KDEL (Lys-Asp-Glu-Leu) containing 1 precursor	352						endoplasmic reticulum lumen				ovary(1)	1	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ATGAAATATGTTTCACAATGG	0.333000													13	17					0	0	1	0	0	
FAM155A	728215	broad.mit.edu	37	13	108518413	108518413	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:108518413A>T	uc001vql.2	-	1	1048	c.532T>A	c.(532-534)TCG>ACG	p.S178T		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	178						integral to membrane	binding			skin(1)	1						CACTGGCCCGAGGACGCGCCC	0.672000													20	45					0	0	1	0	0	
FAM155A	728215	broad.mit.edu	37	13	108518443	108518443	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:108518443G>T	uc001vql.2	-	1	1018	c.502C>A	c.(502-504)CTG>ATG	p.L168M		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	168						integral to membrane	binding			skin(1)	1						CAAGTCTCCAGGCGCCACACG	0.697000													18	41					1.67942e-08	1.74873e-08	1	1	0	
FAM155A	728215	broad.mit.edu	37	13	108518697	108518697	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:108518697T>C	uc001vql.2	-	1	764	c.248A>G	c.(247-249)CAG>CGG	p.Q83R		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	83	Poly-Gln.					integral to membrane	binding			skin(1)	1						ctgctgctgctgctgctgctg	0.393000													21	26					0	0	1	0	0	
MYO16	23026	broad.mit.edu	37	13	109672094	109672094	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:109672094A>G	uc001vqt.1	+	23	2691	c.2565A>G	c.(2563-2565)GAA>GAG	p.E855E	MYO16_uc010agk.1_Silent_p.E877E|MYO16_uc001vqu.1_Silent_p.E655E|MYO16_uc010tjh.1_Silent_p.E367E	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	855	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TGGATGAAGAAAGTCAAATGA	0.358000													7	33					0	0	1	0	0	
RASA3	22821	broad.mit.edu	37	13	114773011	114773011	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:114773011T>G	uc001vui.2	-	18	1871	c.1740A>C	c.(1738-1740)GAA>GAC	p.E580D	RASA3_uc010tkk.1_Missense_Mutation_p.E548D|RASA3_uc001vuj.2_Missense_Mutation_p.E197D	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	580	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			ctccttaccctTCTTTAAGCA	0.249000													5	25					0	0	1	0	0	
UPF3A	65110	broad.mit.edu	37	13	115070300	115070300	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:115070300C>T	uc001vup.2	+	10	1376	c.1339C>T	c.(1339-1341)CGC>TGC	p.R447C	UPF3A_uc001vuq.2_Missense_Mutation_p.R414C|UPF3A_uc001vus.2_RNA|UPF3A_uc001vur.2_RNA|UPF3A_uc001vut.2_Missense_Mutation_p.R246C|UPF3A_uc001vuu.2_Silent_p.L100L	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	447					mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		TCCAGGAGCTCGCTTCCGAGC	0.567000													31	44					0	0	1	0	0	
ZNF219	51222	broad.mit.edu	37	14	21558908	21558908	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:21558908C>T	uc001vzr.2	-	5	2377	c.1956G>A	c.(1954-1956)CCG>CCA	p.P652P	ZNF219_uc001vzs.2_Silent_p.P652P|ZNF219_uc010aik.1_Silent_p.P652P	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	652					negative regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CAGTGGCGAACGGGCAGAAGA	0.746000													3	3					0	0	1	0	0	
SUPT16H	11198	broad.mit.edu	37	14	21827736	21827736	+	Silent	SNP	C	T	T	rs139776422	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:21827736C>T	uc001wao.2	-	19	2547	c.2208G>A	c.(2206-2208)ACG>ACA	p.T736T	SUPT16H_uc001wan.2_5'Flank	NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	736					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		ACTGCACATCCGTGTGCCGCT	0.468000													24	44					0	0	1	0	0	
OR10G2	26534	broad.mit.edu	37	14	22102264	22102264	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:22102264G>T	uc010tmc.1	-	1	735	c.735C>A	c.(733-735)ACC>ACA	p.T245T		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		GGGAGCCACAGGTGGAGAAGG	0.562000													16	16					6.72482e-11	7.08172e-11	1	1	0	
CDH24	64403	broad.mit.edu	37	14	23523355	23523355	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:23523355G>A	uc001wil.2	-	6	1227	c.967C>T	c.(967-969)CGC>TGC	p.R323C	CDH24_uc010akf.2_Missense_Mutation_p.R323C|CDH24_uc001win.3_Missense_Mutation_p.R323C	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	323	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		CTAACCTTGCGGACAGTGAGG	0.552000													27	68					0	0	1	0	0	
EFS	10278	broad.mit.edu	37	14	23829044	23829044	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:23829044G>T	uc001wjo.2	-	4	1251	c.643C>A	c.(643-645)CCC>ACC	p.P215T	EFS_uc001wjp.2_Missense_Mutation_p.P122T|EFS_uc010tnm.1_Intron	NM_005864	NP_005855	O43281	EFS_HUMAN	embryonal Fyn-associated substrate isoform 1	215	Pro-rich.				cell adhesion|intracellular signal transduction	cytoplasm	SH3 domain binding			large_intestine(1)	1	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00649)		GCATAGATGGGGGGCCCCGGC	0.617000													21	44					4.63292e-17	4.97673e-17	1	1	0	
MYH6	4624	broad.mit.edu	37	14	23853869	23853869	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:23853869G>A	uc001wjv.2	-	36	5414	c.5347C>T	c.(5347-5349)CGC>TGC	p.R1783C		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1783	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TTCTTCATGCGCTCCAGGTGG	0.617000													29	74					0	0	1	0	0	
MYH6	4624	broad.mit.edu	37	14	23871981	23871981	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:23871981G>A	uc001wjv.2	-	11	994	c.927C>T	c.(925-927)TAC>TAT	p.Y309Y	MYH6_uc010akp.1_Silent_p.Y309Y	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	309	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		AGGCGTAGTCGTAGGGATTGT	0.418000													12	11					0	0	1	0	0	
JPH4	84502	broad.mit.edu	37	14	24040511	24040511	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:24040511G>A	uc001wkq.2	-	6	2347	c.1429C>T	c.(1429-1431)CGG>TGG	p.R477W	JPH4_uc010tnr.1_Missense_Mutation_p.R142W|JPH4_uc001wkr.2_Missense_Mutation_p.R477W	NM_032452	NP_115828	Q96JJ6	JPH4_HUMAN	junctophilin 4	477	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane				ovary(1)|pancreas(1)	2	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		AGTGGGCTCCGGCAGGCAGGG	0.682000													19	38					0	0	1	0	0	
CPNE6	9362	broad.mit.edu	37	14	24543949	24543949	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:24543949C>T	uc001wll.2	+	7	716	c.617C>T	c.(616-618)CCG>CTG	p.P206L	CPNE6_uc010tnv.1_Missense_Mutation_p.P261L|CPNE6_uc001wlm.2_Missense_Mutation_p.P31L|CPNE6_uc001wln.2_5'Flank	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	206	C2 2.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		AGCTGGGAGCCGTTCCGCCTG	0.557000													9	12					0	0	1	0	0	
DCAF11	80344	broad.mit.edu	37	14	24589034	24589034	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:24589034C>T	uc001wlv.2	+	11	1301	c.1021C>T	c.(1021-1023)CGG>TGG	p.R341W	DCAF11_uc001wlw.2_Missense_Mutation_p.R341W|DCAF11_uc001wlz.2_Missense_Mutation_p.R241W|DCAF11_uc001wly.2_Missense_Mutation_p.R297W|DCAF11_uc001wme.2_Missense_Mutation_p.R301W|DCAF11_uc010tny.1_Missense_Mutation_p.R208W|DCAF11_uc001wmd.2_Missense_Mutation_p.R341W|DCAF11_uc001wmc.2_Missense_Mutation_p.R241W|DCAF11_uc001wmb.3_Missense_Mutation_p.R315W|DCAF11_uc001wma.3_Missense_Mutation_p.R341W	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	341	WD 4.					CUL4 RING ubiquitin ligase complex	protein binding				0						ACGCACCATGCGGGAGGATGA	0.552000													13	23					0	0	1	0	0	
TM9SF1	10548	broad.mit.edu	37	14	24658815	24658815	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:24658815C>T	uc001wnb.1	-	6	1975	c.1627G>A	c.(1627-1629)GGC>AGC	p.G543S	IPO4_uc001wmu.2_5'Flank|IPO4_uc001wmv.1_5'Flank|IPO4_uc001wmx.1_5'UTR|IPO4_uc001wmy.1_5'UTR|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_5'UTR|TM9SF1_uc010toa.1_Missense_Mutation_p.G456S|TM9SF1_uc001wna.1_RNA|TM9SF1_uc010tob.1_Missense_Mutation_p.G778S	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	543	Helical; (Potential).				autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		ATGAAGAGGCCGGTGGAGCCA	0.542000													20	45					0	0	1	0	0	
NYNRIN	57523	broad.mit.edu	37	14	24879282	24879282	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:24879282C>T	uc001wpf.3	+	4	2600	c.2282C>T	c.(2281-2283)GCG>GTG	p.A761V		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	761					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CACCTGCAAGCGAACAGCACA	0.627000													12	33					0	0	1	0	0	
PRKD1	5587	broad.mit.edu	37	14	30135310	30135310	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:30135310G>C	uc001wqh.2	-	3	689	c.508C>G	c.(508-510)CTG>GTG	p.L170V		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	170	Phorbol-ester/DAG-type 1.				cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		TGACGTACCAGCCCCCACAGC	0.368000													65	101					0	0	1	0	0	
STRN3	29966	broad.mit.edu	37	14	31380367	31380367	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:31380367C>T	uc001wqu.2	-	13	1816	c.1600G>A	c.(1600-1602)GGC>AGC	p.G534S	STRN3_uc001wqv.2_Missense_Mutation_p.G450S|STRN3_uc010tpj.1_RNA	NM_001083893	NP_001077362	Q13033	STRN3_HUMAN	nuclear autoantigen isoform 1	534	WD 2.				negative regulation of estrogen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus	cytoplasm|dendrite|Golgi apparatus|neuronal cell body|nucleoplasm|nucleus|plasma membrane|protein complex	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.0124)		AGAACAGGGCCGCTATTGTAG	0.383000													11	26					0	0	1	0	0	
HEATR5A	25938	broad.mit.edu	37	14	31777196	31777196	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:31777196C>T	uc001wrf.3	-	24	3919	c.3842G>A	c.(3841-3843)CGT>CAT	p.R1281H	HEATR5A_uc010ami.2_Missense_Mutation_p.R1179H	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1568							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		TGCATCTGAACGTAAGGAACA	0.378000													10	28					0	0	1	0	0	
NFKBIA	4792	broad.mit.edu	37	14	35872932	35872932	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:35872932G>C	uc001wtf.3	-	2	410	c.300C>G	c.(298-300)GAC>GAG	p.D100E	NFKBIA_uc001wte.3_Missense_Mutation_p.D10E|NFKBIA_uc001wtg.3_Missense_Mutation_p.D100E|NFKBIA_uc010amo.2_Intron	NM_020529	NP_065390	P25963	IKBA_HUMAN	nuclear factor of kappa light polypeptide gene	100	ANK 1.				anti-apoptosis|apoptosis|cellular response to cold|cytoplasmic sequestering of NF-kappaB|innate immune response|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of DNA binding|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of NF-kappaB transcription factor activity|nerve growth factor receptor signaling pathway|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|I-kappaB/NF-kappaB complex|nucleus|plasma membrane	identical protein binding|NF-kappaB binding|nuclear localization sequence binding|ubiquitin protein ligase binding			breast(2)	2	Breast(36;0.0484)|Hepatocellular(127;0.158)		Lung(238;9.25e-06)|LUAD - Lung adenocarcinoma(48;1.53e-05)|Epithelial(34;0.00314)|all cancers(34;0.00891)	GBM - Glioblastoma multiforme(112;0.0222)		GGAAGGCCAGGTCTCCCTTCA	0.577000													5	12					0	0	1	0	0	
CLEC14A	161198	broad.mit.edu	37	14	38725131	38725131	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:38725131C>T	uc001wum.1	-	1	444	c.97G>A	c.(97-99)GCC>ACC	p.A33T		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	33	Extracellular (Potential).|C-type lectin.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GCCCCCGAGGCCGAGCAGCCA	0.632000													4	5					0	0	1	0	0	
CDKL1	8814	broad.mit.edu	37	14	50862593	50862593	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:50862593G>T	uc010anu.1	-	5	564	c.564C>A	c.(562-564)TCC>TCA	p.S188S	CDKL1_uc001wxz.2_5'UTR	NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	Error:Variant_position_missing_in_Q00532_after_alignment						cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					CCATCATAGAGGAATAAATCT	0.239000													5	29					0.014758	0.0148083	1	1	0	
NIN	51199	broad.mit.edu	37	14	51219236	51219236	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:51219236C>A	uc001wym.2	-	21	5141	c.4950G>T	c.(4948-4950)CAG>CAT	p.Q1650H	NIN_uc001wyi.2_Missense_Mutation_p.Q1650H|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.Q937H|NIN_uc010tqp.1_Missense_Mutation_p.Q1656H|NIN_uc001wyo.2_Missense_Mutation_p.Q1650H	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	1650	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					CAGGCCATACCTGCACTTTAC	0.368000			T	PDGFRB	MPD								87	208					3.90494e-43	4.25424e-43	1	1	0	
ABHD12B	145447	broad.mit.edu	37	14	51347195	51347195	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:51347195G>A	uc001wys.2	+	4	376	c.361G>A	c.(361-363)GAA>AAA	p.E121K	ABHD12B_uc001wyq.2_Missense_Mutation_p.E14K|ABHD12B_uc001wyr.2_Missense_Mutation_p.E44K|ABHD12B_uc010any.2_RNA	NM_181533	NP_853511	Q7Z5M8	AB12B_HUMAN	abhydrolase domain containing 12B isoform b	121							hydrolase activity			breast(1)	1	all_epithelial(31;0.00481)|Breast(41;0.148)					CTGCCGGGGGGAAGATGCCAA	0.498000													27	71					0	0	1	0	0	
GMFB	2764	broad.mit.edu	37	14	54944856	54944856	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:54944856C>T	uc010tqz.1	-	7	478	c.379G>A	c.(379-381)GAA>AAA	p.E127K	GMFB_uc001xaw.1_RNA	NM_004124	NP_004115	P60983	GMFB_HUMAN	glia maturation factor, beta	127	ADF-H.				nervous system development|protein phosphorylation	intracellular	actin binding|enzyme activator activity|growth factor activity|protein kinase inhibitor activity|signal transducer activity				0						GTTAGGTCTTCGGTATTTCTT	0.264000													5	10					0	0	1	0	0	
PELI2	57161	broad.mit.edu	37	14	56763702	56763702	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:56763702C>T	uc001xch.2	+	6	1367	c.1081C>T	c.(1081-1083)CCG>TCG	p.P361S		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	361					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						AGACGCAGGACCGCCAACTCA	0.552000													33	96					0	0	1	0	0	
C14orf37	145407	broad.mit.edu	37	14	58606016	58606016	+	Missense_Mutation	SNP	C	T	T	rs147297953	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:58606016C>T	uc001xdc.2	-	2	172	c.61G>A	c.(61-63)GTT>ATT	p.V21I	C14orf37_uc010tro.1_Missense_Mutation_p.V59I|C14orf37_uc001xdd.2_Missense_Mutation_p.V21I|C14orf37_uc001xde.2_Missense_Mutation_p.V21I	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	21						integral to membrane	binding				0						TGTGTGGCAACGCTGAAAAGC	0.473000													23	85					0	0	1	0	0	
C14orf37	145407	broad.mit.edu	37	14	58606066	58606066	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:58606066G>A	uc001xdc.2	-	2	122	c.11C>T	c.(10-12)CCG>CTG	p.P4L	C14orf37_uc010tro.1_Missense_Mutation_p.P42L|C14orf37_uc001xdd.2_Missense_Mutation_p.P4L|C14orf37_uc001xde.2_Missense_Mutation_p.P4L	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	4						integral to membrane	binding				0						CAATACAATCGGTCCTCTCAT	0.433000													17	33					0	0	1	0	0	
DAAM1	23002	broad.mit.edu	37	14	59793693	59793693	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:59793693G>A	uc001xdz.1	+	12	1481	c.1356G>A	c.(1354-1356)GCG>GCA	p.A452A	DAAM1_uc001xea.1_Silent_p.A452A|DAAM1_uc001xeb.1_Silent_p.A452A	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	452	Potential.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		AAGAACAAGCGGAAAAAATGA	0.338000													24	57					0	0	1	0	0	
DAAM1	23002	broad.mit.edu	37	14	59826194	59826194	+	Nonsense_Mutation	SNP	C	T	T	rs148831209		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:59826194C>T	uc001xdz.1	+	22	2760	c.2635C>T	c.(2635-2637)CGA>TGA	p.R879*	DAAM1_uc001xea.1_Nonsense_Mutation_p.R869*|DAAM1_uc001xec.1_RNA	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	879	FH2.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		TGAAGAATTGCGAGATATTCC	0.368000													11	32					0	0	1	0	0	
KCNH5	27133	broad.mit.edu	37	14	63483611	63483611	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:63483611G>A	uc001xfx.2	-	2	186	c.135C>T	c.(133-135)GAC>GAT	p.D45D	KCNH5_uc001xfy.2_Silent_p.D45D|KCNH5_uc001xfz.1_Translation_Start_Site|KCNH5_uc001xga.2_Translation_Start_Site	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	45	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TACAAAAACCGTCATTACTAT	0.378000													27	55					0	0	1	0	0	
PLEKHG3	26030	broad.mit.edu	37	14	65208053	65208053	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:65208053G>A	uc001xho.1	+	16	2087	c.1818G>A	c.(1816-1818)GCG>GCA	p.A606A	PLEKHG3_uc001xhn.1_Silent_p.A550A|PLEKHG3_uc001xhp.2_Silent_p.A727A|PLEKHG3_uc010aqh.1_Silent_p.A148A|PLEKHG3_uc001xhq.1_Silent_p.A111A	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	606					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		GCGTCATTGCGGAGCGATTTG	0.647000													12	31					0	0	1	0	0	
DCAF5	8816	broad.mit.edu	37	14	69584873	69584873	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:69584873C>T	uc001xkp.2	-	4	737	c.518G>A	c.(517-519)CGG>CAG	p.R173Q	DCAF5_uc001xkq.2_Missense_Mutation_p.R172Q|DCAF5_uc001xkr.3_Missense_Mutation_p.R173Q	NM_003861	NP_003852	Q96JK2	DCAF5_HUMAN	WD repeat domain 22	173	WD 3.					CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)	2						GGGGGATTCCCGAATGTCCCA	0.458000													34	41					0	0	1	0	0	
SIPA1L1	26037	broad.mit.edu	37	14	72138134	72138134	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:72138134G>A	uc001xms.2	+	8	2902	c.2554G>A	c.(2554-2556)GAG>AAG	p.E852K	SIPA1L1_uc001xmt.2_Missense_Mutation_p.E852K|SIPA1L1_uc001xmu.2_Missense_Mutation_p.E852K|SIPA1L1_uc001xmv.2_Missense_Mutation_p.E852K|SIPA1L1_uc010ttm.1_Missense_Mutation_p.E327K	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	852					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		TCCAGGAGCCGAGCTCAGCAG	0.502000													13	28					0	0	1	0	0	
MLH3	27030	broad.mit.edu	37	14	75514685	75514685	+	Silent	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:75514685A>C	uc001xrd.1	-	2	1890	c.1674T>G	c.(1672-1674)ACT>ACG	p.T558T	MLH3_uc001xre.1_Silent_p.T558T|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	558					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		ATCCCACTTCAGTAGCATCTT	0.368000								MMR					39	34					0	0	1	0	0	
NRXN3	9369	broad.mit.edu	37	14	79181374	79181374	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:79181374C>T	uc001xun.2	+	5	1308	c.817C>T	c.(817-819)CAG>TAG	p.Q273*	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Nonsense_Mutation_p.Q407*	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	646	EGF-like 2.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GAGTGCCAAGCAGTGTGACAG	0.557000													9	24					0	0	1	0	0	
EML5	161436	broad.mit.edu	37	14	89206753	89206753	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:89206753C>T	uc001xxg.2	-	6	875	c.689G>A	c.(688-690)CGA>CAA	p.R230Q		NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	230	WD 4.					cytoplasm|microtubule				ovary(3)	3						TTGTATTGTTCGTATAAGATT	0.353000													14	15					0	0	1	0	0	
SLC24A4	123041	broad.mit.edu	37	14	92790255	92790255	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:92790255C>T	uc001yak.2	+	1	54	c.30C>T	c.(28-30)TGC>TGT	p.C10C	SLC24A4_uc001yai.2_Intron|SLC24A4_uc010twm.1_Silent_p.C27C|SLC24A4_uc001yaj.2_Silent_p.C10C	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	27						integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		GCTTCGTGTGCGCGGTGCTGG	0.701000													9	8					0	0	1	0	0	
PPP1R13B	23368	broad.mit.edu	37	14	104206767	104206767	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:104206767G>A	uc001yof.1	-	12	2269	c.1986C>T	c.(1984-1986)ACC>ACT	p.T662T	PPP1R13B_uc010awv.1_RNA|PPP1R13B_uc001yog.1_Silent_p.T529T	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	662	Pro-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				GGCTCTCCACGGTGCTGCCAT	0.652000													25	30					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106494406	106494406	+	RNA	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:106494406G>A	uc010tyt.1	-	1760		c.34592C>T								Parts of antibodies, mostly variable regions.												0						TTTCACCAGCGTAGGACCAGA	0.542000													21	16					0	0	1	0	0	
OR4M2	390538	broad.mit.edu	37	15	22368649	22368649	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:22368649T>G	uc010tzu.1	+	1	74	c.74T>G	c.(73-75)CTA>CGA	p.L25R	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GAGGTCCAACTAGTCCTATTT	0.383000													59	343					0	0	1	0	0	
OR4N4	283694	broad.mit.edu	37	15	22383027	22383027	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:22383027C>T	uc001yuc.1	+	7	1536	c.555C>T	c.(553-555)ATC>ATT	p.I185I	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.I185I	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GACAGGTCATCAAGCTGGCTT	0.517000													44	125					0	0	1	0	0	
CYFIP1	23191	broad.mit.edu	37	15	22999351	22999351	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:22999351G>A	uc001yus.2	+	29	3327	c.3223G>A	c.(3223-3225)GCA>ACA	p.A1075T	CYFIP1_uc001yut.2_Missense_Mutation_p.A1075T|CYFIP1_uc001yuu.2_Missense_Mutation_p.A644T|CYFIP1_uc001yuv.2_Missense_Mutation_p.A269T	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	1075					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		AATTGCCATCGCAAGAGAGGG	0.527000													20	48					0	0	1	0	0	
C15orf2	23742	broad.mit.edu	37	15	24921855	24921855	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:24921855C>T	uc001ywo.2	+	1	1315	c.841C>T	c.(841-843)CTG>TTG	p.L281L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	281					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGCGGAAGTGCTGAATGAAGA	0.592000													4	48					0	0	1	0	0	
OCA2	4948	broad.mit.edu	37	15	28117031	28117031	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:28117031T>C	uc001zbh.3	-	20	2227	c.2117A>G	c.(2116-2118)GAA>GGA	p.E706G	OCA2_uc010ayv.2_Missense_Mutation_p.E682G	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	706	Extracellular (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		AGCAGTTTGTTCTCCAACATA	0.318000									Oculocutaneous_Albinism				17	61					0	0	1	0	0	
CHRFAM7A	89832	broad.mit.edu	37	15	30659622	30659622	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:30659622C>G	uc001zdt.1	-	9	1285	c.719G>C	c.(718-720)TGG>TCG	p.W240S	DKFZP434L187_uc001zds.2_Intron|CHRFAM7A_uc001zdu.1_Missense_Mutation_p.W149S|CHRFAM7A_uc010azn.2_Missense_Mutation_p.W149S	NM_139320	NP_647536	Q494W8	CRFM7_HUMAN	CHRNA7-FAM7A fusion isoform 1	240	Helical; (Potential).					integral to membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity			skin(1)	1		all_lung(180;3.42e-11)|Breast(32;0.000153)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		GGAACGTACCCACTTGGGCAT	0.572000													5	31					0	0	1	0	0	
CHRFAM7A	89832	broad.mit.edu	37	15	30659688	30659688	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:30659688A>G	uc001zdt.1	-	9	1219	c.653T>C	c.(652-654)GTG>GCG	p.V218A	DKFZP434L187_uc001zds.2_Intron|CHRFAM7A_uc001zdu.1_Missense_Mutation_p.V127A|CHRFAM7A_uc010azn.2_Missense_Mutation_p.V127A	NM_139320	NP_647536	Q494W8	CRFM7_HUMAN	CHRNA7-FAM7A fusion isoform 1	218	Helical; (Potential).					integral to membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity			skin(1)	1		all_lung(180;3.42e-11)|Breast(32;0.000153)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		CGTCACCACCACCGAGAGGCC	0.632000													10	39					0	0	1	0	0	
CHRFAM7A	89832	broad.mit.edu	37	15	30664463	30664463	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:30664463C>T	uc001zdt.1	-	7	976	c.410G>A	c.(409-411)CGC>CAC	p.R137H	DKFZP434L187_uc001zds.2_Intron|CHRFAM7A_uc001zdu.1_Missense_Mutation_p.R46H|CHRFAM7A_uc010azn.2_Missense_Mutation_p.R46H	NM_139320	NP_647536	Q494W8	CRFM7_HUMAN	CHRNA7-FAM7A fusion isoform 1	137						integral to membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity			skin(1)	1		all_lung(180;3.42e-11)|Breast(32;0.000153)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		CGTCCTGCGGCGCATGGTCAC	0.587000													17	49					0	0	1	0	0	
MTMR15	22909	broad.mit.edu	37	15	31210380	31210380	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:31210380A>G	uc001zff.2	+	6	2116	c.1825A>G	c.(1825-1827)ACG>GCG	p.T609A	MTMR15_uc001zfe.2_Missense_Mutation_p.T214A	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	609					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		TGCAGCAGCCACGCACATGCT	0.468000								Direct_reversal_of_damage|Editing_and_processing_nucleases					26	58					0	0	1	0	0	
DISP2	85455	broad.mit.edu	37	15	40661852	40661852	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:40661852C>A	uc001zlk.1	+	8	3628	c.3539C>A	c.(3538-3540)ACA>AAA	p.T1180K		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	1180					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		GACACCAGCACAGCCACCAGC	0.657000													16	67					6.94344e-10	7.29454e-10	1	1	0	
BAHD1	22893	broad.mit.edu	37	15	40751414	40751414	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:40751414A>G	uc001zlu.2	+	2	822	c.751A>G	c.(751-753)AAG>GAG	p.K251E	BAHD1_uc001zlt.2_Missense_Mutation_p.K251E|BAHD1_uc010bbp.1_Missense_Mutation_p.K251E|BAHD1_uc001zlv.2_Missense_Mutation_p.K251E	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	251	Pro-rich.				heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		AAAGTGGCCCAAGGTCAATGG	0.667000													13	23					0	0	1	0	0	
RPUSD2	27079	broad.mit.edu	37	15	40865992	40865992	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:40865992C>A	uc001zmd.1	+	3	1170	c.1170C>A	c.(1168-1170)AAC>AAA	p.N390K		NM_152260	NP_689473	Q8IZ73	RUSD2_HUMAN	RNA pseudouridylate synthase domain containing	390					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			skin(1)	1		all_cancers(109;2.74e-14)|all_epithelial(112;1.64e-11)|Lung NSC(122;6.69e-09)|all_lung(180;1.22e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.1e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0786)		CCATCTACAACTCAGTTGCCT	0.592000													4	42					0.150653	0.15091	1	1	0	
CASC5	57082	broad.mit.edu	37	15	40915924	40915924	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:40915924C>T	uc010bbs.1	+	11	3701	c.3540C>T	c.(3538-3540)ACC>ACT	p.T1180T	CASC5_uc010ucq.1_Silent_p.T1004T|CASC5_uc001zme.2_Silent_p.T1154T|CASC5_uc010bbt.1_Silent_p.T1154T	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	1180	2.|2 X 104 AA approximate repeats.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		TGGACAAAACCGTATTGTTCA	0.418000													24	57					0	0	1	0	0	
ZFYVE19	84936	broad.mit.edu	37	15	41105091	41105091	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:41105091C>T	uc001zmt.1	+	7	1535	c.1021C>T	c.(1021-1023)CCC>TCC	p.P341S	ZFYVE19_uc001zmu.1_Intron|ZFYVE19_uc001zmv.1_Missense_Mutation_p.P166S|ZFYVE19_uc001zmw.1_Missense_Mutation_p.P166S|ZFYVE19_uc001zmx.1_Missense_Mutation_p.P166S|ZFYVE19_uc010bcc.1_Missense_Mutation_p.P166S	NM_001077268	NP_001070736	Q96K21	ZFY19_HUMAN	zinc finger, FYVE domain containing 19	341	Potential.						zinc ion binding				0		all_cancers(109;3.31e-18)|all_epithelial(112;2.33e-15)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.76e-05)|COAD - Colon adenocarcinoma(120;0.151)|BRCA - Breast invasive adenocarcinoma(123;0.164)		GGGACAGGACCCCGAGAGAGG	0.637000													8	30					0	0	1	0	0	
ITPKA	3706	broad.mit.edu	37	15	41794294	41794294	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:41794294G>A	uc001znz.2	+	4	914	c.903G>A	c.(901-903)ACG>ACA	p.T301T		NM_002220	NP_002211	P23677	IP3KA_HUMAN	1D-myo-inositol-trisphosphate 3-kinase A	301					signal transduction		ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;7.63e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		AAGCTCCCACGGAGGAGGAGC	0.642000													4	9					0	0	1	0	0	
PLA2G4F	255189	broad.mit.edu	37	15	42441943	42441943	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:42441943G>T	uc001zoz.2	-	11	1090	c.1027C>A	c.(1027-1029)CTG>ATG	p.L343M	PLA2G4F_uc001zoy.2_5'Flank|PLA2G4F_uc010bcr.2_Missense_Mutation_p.L94M|PLA2G4F_uc001zpa.2_Missense_Mutation_p.L94M|PLA2G4F_uc010bcs.2_Missense_Mutation_p.L130M	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	343	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		CTCAATCCCAGCACTTGCTGC	0.582000													12	21					3.07112e-06	3.15876e-06	1	1	0	
ZFP106	64397	broad.mit.edu	37	15	42743714	42743714	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:42743714T>C	uc001zpw.2	-	2	1022	c.687A>G	c.(685-687)GTA>GTG	p.V229V	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Silent_p.V12V|ZFP106_uc001zpy.1_Silent_p.V252V	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	229						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TTGTACTACGTACACTGGATT	0.403000													39	103					0	0	1	0	0	
TGM5	9333	broad.mit.edu	37	15	43548790	43548790	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:43548790G>T	uc001zrd.1	-	4	539	c.531C>A	c.(529-531)CGC>CGA	p.R177R	TGM5_uc001zre.1_Silent_p.R95R	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	177					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	AGGGACATGGGCGGATCCAGT	0.557000													52	88					1.4374e-25	1.5602e-25	1	1	0	
MAP1A	4130	broad.mit.edu	37	15	43814120	43814120	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:43814120G>A	uc001zrt.2	+	4	916	c.449G>A	c.(448-450)CGG>CAG	p.R150Q		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	150						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GATGCCTCCCGGAAAGCCAAG	0.542000													17	31					0	0	1	0	0	
SPG11	80208	broad.mit.edu	37	15	44907730	44907730	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:44907730A>C	uc001ztx.2	-	16	2900	c.2869T>G	c.(2869-2871)TTT>GTT	p.F957V	SPG11_uc010ueh.1_Missense_Mutation_p.F957V|SPG11_uc010uei.1_Missense_Mutation_p.F957V|SPG11_uc001ztz.1_Missense_Mutation_p.F116V	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	957	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		AAGCATTCAAAGTCTTCCAGT	0.413000													23	48					0	0	1	0	0	
DUOX1	53905	broad.mit.edu	37	15	45436333	45436333	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:45436333G>A	uc001zus.1	+	18	2382	c.2036G>A	c.(2035-2037)CGC>CAC	p.R679H	DUOX1_uc001zut.1_Missense_Mutation_p.R679H|DUOX1_uc010bee.1_Missense_Mutation_p.R59H	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	679	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		ACCGTGCTCCGCACCATCCAG	0.622000													11	55					0	0	1	0	0	
MYEF2	50804	broad.mit.edu	37	15	48460873	48460873	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:48460873A>G	uc001zwi.3	-	2	449	c.325T>C	c.(325-327)TAT>CAT	p.Y109H	MYEF2_uc001zwj.3_Missense_Mutation_p.Y109H|MYEF2_uc001zwl.2_5'UTR	NM_016132	NP_057216	Q9P2K5	MYEF2_HUMAN	myelin expression factor 2	109	RRM 1.				transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding|nucleotide binding|RNA binding			lung(2)|ovary(1)	3		all_lung(180;0.00217)		all cancers(107;3.73e-10)|GBM - Glioblastoma multiforme(94;7.81e-07)		TTCATGTCATATGGGATGTTG	0.393000													28	74					0	0	1	0	0	
FBN1	2200	broad.mit.edu	37	15	48797303	48797303	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:48797303G>A	uc001zwx.1	-	16	2207	c.1879C>T	c.(1879-1881)CGT>TGT	p.R627C		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	627	EGF-like 10; calcium-binding.		R -> C (in MFS; enhances proteolytic degradation).		heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TTGACGCAACGCCCATTCATG	0.448000													30	66					0	0	1	0	0	
DMXL2	23312	broad.mit.edu	37	15	51860757	51860757	+	Splice_Site	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:51860757T>A	uc002abf.2	-	3	439	c.214_splice	c.e3-1	p.I72_splice	DMXL2_uc010ufy.1_Splice_Site_p.I72_splice|DMXL2_uc010bfa.2_Splice_Site_p.I72_splice|DMXL2_uc002abg.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2							cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		AGCTGCAATCTAAAAAAGAAT	0.254000													10	17					0	0	1	0	0	
SCG3	29106	broad.mit.edu	37	15	52005589	52005589	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:52005589G>A	uc002abh.2	+	11	1675	c.1267G>A	c.(1267-1269)GAC>AAC	p.D423N	SCG3_uc010ufz.1_Missense_Mutation_p.D191N	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	423					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		GAAGAAACATGACAAAAAGGG	0.368000													14	49					0	0	1	0	0	
LEO1	123169	broad.mit.edu	37	15	52254643	52254643	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:52254643G>A	uc002abo.2	-	3	878	c.862C>T	c.(862-864)CGC>TGC	p.R288C	LEO1_uc010bfd.2_Missense_Mutation_p.R288C	NM_138792	NP_620147	Q8WVC0	LEO1_HUMAN	Leo1, Paf1/RNA polymerase II complex component,	288	Asp-rich.				histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding				0				all cancers(107;0.00264)		GCATTCTTGCGTTTCATTCGT	0.358000													18	34					0	0	1	0	0	
ONECUT1	3175	broad.mit.edu	37	15	53081395	53081395	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:53081395G>A	uc002aci.1	-	1	815	c.687C>T	c.(685-687)CAC>CAT	p.H229H		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	229					endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		GCTGCTCCCCGTGGCGGCCGA	0.726000													23	34					0	0	1	0	0	
NEDD4	4734	broad.mit.edu	37	15	56122114	56122114	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:56122114C>T	uc002adj.2	-	25	4241	c.3941G>A	c.(3940-3942)GGC>GAC	p.G1314D	NEDD4_uc002adl.2_Missense_Mutation_p.G895D|NEDD4_uc002adi.2_Missense_Mutation_p.G1242D|NEDD4_uc010ugj.1_Missense_Mutation_p.G1298D|NEDD4_uc010bfm.2_Missense_Mutation_p.G1297D|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	1314	HECT.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		TCCATCAAAGCCCTGGGTGTT	0.358000													5	26					0	0	1	0	0	
MYO1E	4643	broad.mit.edu	37	15	59506895	59506895	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:59506895C>T	uc002aga.2	-	11	1504	c.1132G>A	c.(1132-1134)GAC>AAC	p.D378N		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	378	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TCTTCATGGTCTTTCTCCATG	0.428000													29	114					0	0	1	0	0	
CA12	771	broad.mit.edu	37	15	63632625	63632625	+	Silent	SNP	C	T	T	rs139249118		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:63632625C>T	uc002amc.2	-	7	765	c.609G>A	c.(607-609)CCG>CCA	p.P203P	CA12_uc002amd.2_Silent_p.P203P|CA12_uc002ame.2_Silent_p.P143P	NM_001218	NP_001209	O43570	CAH12_HUMAN	carbonic anhydrase XII isoform 1 precursor	203	Extracellular (Potential).				one-carbon metabolic process	integral to membrane	carbonate dehydratase activity|zinc ion binding			ovary(1)	1					Acetazolamide(DB00819)	TGTTGAATCCCGGGACGAATG	0.572000													23	42					0	0	1	0	0	
HERC1	8925	broad.mit.edu	37	15	64005666	64005666	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:64005666G>A	uc002amp.2	-	23	4497	c.4349C>T	c.(4348-4350)GCC>GTC	p.A1450V	HERC1_uc010uil.1_Missense_Mutation_p.A434V	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1450					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TATTAACAGGGCACACCGATG	0.517000													20	38					0	0	1	0	0	
RAB11A	8766	broad.mit.edu	37	15	66169844	66169844	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:66169844G>A	uc002apk.2	+	2	343	c.215G>A	c.(214-216)CGA>CAA	p.R72Q	RAB11A_uc010ujk.1_Missense_Mutation_p.R72Q	NM_004663	NP_004654	P62491	RB11A_HUMAN	Ras-related protein Rab-11A	72					cell cycle|cytokinesis|neuron projection development|plasma membrane to endosome transport|protein localization in plasma membrane|small GTPase mediated signal transduction|vesicle-mediated transport	cleavage furrow|plasma membrane|recycling endosome membrane|trans-Golgi network	GTP binding|GTPase activity|syntaxin binding				0						GGGCAAGAGCGATATCGAGCT	0.418000													13	31					0	0	1	0	0	
MEGF11	84465	broad.mit.edu	37	15	66206166	66206166	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:66206166C>T	uc002apm.2	-	20	2760	c.2619G>A	c.(2617-2619)CGG>CGA	p.R873R	MEGF11_uc002apl.2_Silent_p.R798R|MEGF11_uc002apn.1_Silent_p.R873R	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	873						basolateral plasma membrane|integral to membrane				pancreas(1)	1						TCTGCCGCCGCCGATGCCAGG	0.612000													8	20					0	0	1	0	0	
NOX5	79400	broad.mit.edu	37	15	69339850	69339850	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:69339850C>T	uc002ars.1	+	12	1810	c.1790C>T	c.(1789-1791)GCT>GTT	p.A597V	NOX5_uc002arp.1_Missense_Mutation_p.A579V|NOX5_uc002arq.1_Missense_Mutation_p.A551V|NOX5_uc010bid.1_Missense_Mutation_p.A562V|NOX5_uc002arr.1_Missense_Mutation_p.A569V|NOX5_uc010bie.1_Missense_Mutation_p.A397V|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	597	Helical; (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						ACCCCCTTTGCTTCCATTCTG	0.537000													13	28					0	0	1	0	0	
MYO9A	4649	broad.mit.edu	37	15	72190441	72190441	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:72190441C>T	uc002atl.3	-	25	4876	c.4403G>A	c.(4402-4404)TGC>TAC	p.C1468Y	MYO9A_uc010biq.2_Missense_Mutation_p.C1088Y|MYO9A_uc002atn.1_Missense_Mutation_p.C1449Y|MYO9A_uc002atk.2_Missense_Mutation_p.C192Y|MYO9A_uc002atm.1_Missense_Mutation_p.C192Y	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1468	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TTTTCCTGAGCAGTGATACCT	0.388000													50	55					0	0	1	0	0	
SENP8	123228	broad.mit.edu	37	15	72432053	72432053	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:72432053A>G	uc002atp.2	+	2	188	c.89A>G	c.(88-90)CAT>CGT	p.H30R		NM_145204	NP_660205	Q96LD8	SENP8_HUMAN	SUMO/sentrin specific peptidase family member 8	30	Protease.				proteolysis		cysteine-type peptidase activity|protein binding			ovary(1)|skin(1)	2						CTCAATGACCATATTATTGGG	0.473000													52	168					0	0	1	0	0	
CELF6	60677	broad.mit.edu	37	15	72612004	72612004	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:72612004C>T	uc002auh.2	-	1	522	c.212G>A	c.(211-213)CGC>CAC	p.R71H	uc002aug.2_Intron|CELF6_uc002auk.3_RNA|CELF6_uc010biv.1_RNA|CELF6_uc010ukm.1_Missense_Mutation_p.R71H|CELF6_uc002aui.2_Silent_p.P193P|CELF6_uc002auj.2_5'UTR	NM_052840	NP_443072	Q96J87	CELF6_HUMAN	bruno-like 6, RNA binding protein	71	RRM 1.				mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3						CTCGTAGATGCGGCCGAACTC	0.562000													6	5					0	0	1	0	0	
ARIH1	25820	broad.mit.edu	37	15	72875617	72875617	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:72875617A>G	uc002aut.3	+	14	1972	c.1658A>G	c.(1657-1659)GAG>GGG	p.E553G		NM_005744	NP_005735	Q9Y4X5	ARI1_HUMAN	ariadne ubiquitin-conjugating enzyme E2 binding	553					ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding				0						GATCTGTGGGAGTACATTGAG	0.368000													20	67					0	0	1	0	0	
NPTN	27020	broad.mit.edu	37	15	73862645	73862645	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:73862645G>A	uc002avs.2	-	6	1157	c.960C>T	c.(958-960)AAC>AAT	p.N320N	NPTN_uc010bjc.2_Silent_p.N320N|NPTN_uc002avt.2_Silent_p.N204N|NPTN_uc002avr.2_Silent_p.N204N|NPTN_uc010ula.1_Silent_p.N115N	NM_012428	NP_036560	Q9Y639	NPTN_HUMAN	neuroplastin isoform b precursor	320	Ig-like 3.|Extracellular (Potential).				elevation of cytosolic calcium ion concentration|homophilic cell adhesion|long-term synaptic potentiation|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of long-term neuronal synaptic plasticity|positive regulation of neuron projection development|positive regulation of protein phosphorylation	integral to membrane|plasma membrane|presynaptic membrane	cell adhesion molecule binding|type 1 fibroblast growth factor receptor binding				0						AGCCAATGGCGTTGGTGGCAT	0.512000													21	75					0	0	1	0	0	
CD276	80381	broad.mit.edu	37	15	73991987	73991987	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:73991987C>T	uc002avv.1	+	2	241	c.7C>T	c.(7-9)CGT>TGT	p.R3C	CD276_uc010bjd.1_Intron|CD276_uc002avu.1_Missense_Mutation_p.R3C|CD276_uc002avw.1_Missense_Mutation_p.R3C|CD276_uc010ulb.1_5'UTR	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	3					cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						GAAGATGCTGCGTCGGCGGGG	0.652000													7	20					0	0	1	0	0	
PML	5371	broad.mit.edu	37	15	74315664	74315664	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:74315664C>A	uc002awv.2	+	3	1238	c.1098C>A	c.(1096-1098)AGC>AGA	p.S366R	PML_uc002awm.2_Missense_Mutation_p.S366R|PML_uc002awl.2_Missense_Mutation_p.S366R|PML_uc002awj.1_Missense_Mutation_p.S366R|PML_uc002awk.2_Missense_Mutation_p.S366R|PML_uc002awn.2_Missense_Mutation_p.S366R|PML_uc002awo.2_Missense_Mutation_p.S366R|PML_uc002awp.2_Missense_Mutation_p.S366R|PML_uc002awq.2_Missense_Mutation_p.S366R|PML_uc002awr.2_Missense_Mutation_p.S366R|PML_uc002aws.2_Missense_Mutation_p.S366R|PML_uc002awt.2_Missense_Mutation_p.S366R|PML_uc002awu.2_Missense_Mutation_p.S366R|PML_uc010ule.1_Intron|PML_uc002aww.1_Missense_Mutation_p.S281R|PML_uc002awx.2_Missense_Mutation_p.S124R|PML_uc002awy.2_5'Flank	NM_033238	NP_150241	P29590	PML_HUMAN	promyelocytic leukemia protein isoform 1	366					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis|endoplasmic reticulum calcium ion homeostasis|induction of apoptosis|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|maintenance of protein location in nucleus|negative regulation of angiogenesis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of mitotic cell cycle|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of telomerase activity|negative regulation of telomere maintenance via telomerase|negative regulation of transcription, DNA-dependent|negative regulation of translation in response to oxidative stress|PML body organization|PML body organization|positive regulation of defense response to virus by host|positive regulation of histone deacetylation|protein complex assembly|protein stabilization|protein targeting|regulation of calcium ion transport into cytosol|regulation of protein phosphorylation|response to hypoxia|response to virus|transcription, DNA-dependent	cytoplasm|cytosol|early endosome membrane|extrinsic to endoplasmic reticulum membrane|insoluble fraction|nuclear matrix|nuclear membrane|nucleolus|nucleus|PML body	cobalt ion binding|DNA binding|protein binding|protein binding|protein heterodimerization activity|protein homodimerization activity|SUMO binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding|zinc ion binding			central_nervous_system(2)|kidney(2)|breast(1)	5						AGCCCCAGAGCCTGCAAGCTG	0.652000			T	RARA|PAX5	APL|ALL								23	18					1.1804e-14	1.2588e-14	1	1	0	
ISLR2	57611	broad.mit.edu	37	15	74425529	74425529	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:74425529C>T	uc002axd.2	+	4	1203	c.434C>T	c.(433-435)GCG>GTG	p.A145V	ISLR2_uc002axe.2_Missense_Mutation_p.A145V|ISLR2_uc010bjg.2_Missense_Mutation_p.A145V|ISLR2_uc010bjf.2_Missense_Mutation_p.A145V	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	145	LRR 4.|Extracellular (Potential).				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						GCACTCGGTGCGCTACCCGAC	0.647000													15	69					0	0	1	0	0	
ISLR2	57611	broad.mit.edu	37	15	74425935	74425935	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:74425935C>T	uc002axd.2	+	4	1609	c.840C>T	c.(838-840)ACC>ACT	p.T280T	ISLR2_uc002axe.2_Silent_p.T280T|ISLR2_uc010bjg.2_Silent_p.T280T|ISLR2_uc010bjf.2_Silent_p.T280T	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	280	Ig-like.|Extracellular (Potential).				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						CCGGTGGCACCGTAGTCTTAG	0.463000													8	34					0	0	1	0	0	
SEMA7A	8482	broad.mit.edu	37	15	74703284	74703284	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:74703284C>T	uc002axv.2	-	14	1722	c.1682G>A	c.(1681-1683)CGC>CAC	p.R561H	SEMA7A_uc010ulk.1_Missense_Mutation_p.R396H|SEMA7A_uc010ull.1_Missense_Mutation_p.R547H	NM_003612	NP_003603	O75326	SEM7A_HUMAN	semaphorin 7A isoform 1 preproprotein	561	Ig-like C2-type.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(1)|central_nervous_system(1)	2						CAGGTAGTAGCGAGAGTTTGG	0.632000													27	85					0	0	1	0	0	
CYP1A1	1543	broad.mit.edu	37	15	75013639	75013639	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:75013639C>T	uc002ayp.3	-	5	1189	c.1067G>A	c.(1066-1068)CGG>CAG	p.R356Q	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Missense_Mutation_p.R92Q|CYP1A1_uc010bjx.2_Missense_Mutation_p.R92Q|CYP1A1_uc002ayq.3_Missense_Mutation_p.R356Q|CYP1A1_uc010bjy.2_Missense_Mutation_p.R356Q|CYP1A1_uc010bjz.1_Missense_Mutation_p.R92Q	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	356					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	GAGCCGGGGCCGCCGTGACCT	0.602000									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				35	57					0	0	1	0	0	
SCAMP5	192683	broad.mit.edu	37	15	75310770	75310770	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:75310770C>T	uc002azk.1	+	6	569	c.407C>T	c.(406-408)GCT>GTT	p.A136V	SCAMP5_uc002azl.1_Missense_Mutation_p.A136V|SCAMP5_uc002azm.1_Missense_Mutation_p.A136V|SCAMP5_uc002azn.1_Missense_Mutation_p.A144V|SCAMP5_uc010uly.1_Missense_Mutation_p.A65V	NM_138967	NP_620417	Q8TAC9	SCAM5_HUMAN	secretory carrier membrane protein 5	136	Extracellular (Potential).				exocytosis|negative regulation of endocytosis|positive regulation of calcium ion-dependent exocytosis|positive regulation of cytokine secretion|protein transport|response to endoplasmic reticulum stress	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						GGCTGGATTGCTACCATCTCC	0.587000													32	146					0	0	1	0	0	
CSPG4	1464	broad.mit.edu	37	15	75980437	75980437	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:75980437C>T	uc002baw.2	-	3	3062	c.2969G>A	c.(2968-2970)CGC>CAC	p.R990H		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	990	Interaction with COL5A1 (By similarity).|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|Interaction with COL6A2 (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						CTCGCCCTGGCGGGTAGCAAC	0.587000													50	53					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	76074504	76074504	+	Silent	SNP	C	T	T	rs146281026	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:76074504C>T	uc010umm.1	+	8	683	c.606C>T	c.(604-606)CAC>CAT	p.H202H	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		TGAACGCACACGTGACACAGG	0.572000													3	20					0	0	1	0	0	
TBC1D2B	23102	broad.mit.edu	37	15	78316783	78316783	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:78316783G>A	uc002bcy.3	-	6	1185	c.1185C>T	c.(1183-1185)CTC>CTT	p.L395L	TBC1D2B_uc010bla.2_Silent_p.L395L	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	395	Potential.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						GCAGAAGCTCGAGCGTGTCCT	0.547000													88	77					0	0	1	0	0	
IDH3A	3419	broad.mit.edu	37	15	78453996	78453996	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:78453996C>T	uc002bdd.2	+	5	390	c.363C>T	c.(361-363)TAC>TAT	p.Y121Y	IDH3A_uc010umt.1_Intron|IDH3A_uc010umu.1_Silent_p.Y12Y|IDH3A_uc002bde.2_Silent_p.Y71Y|IDH3A_uc010umv.1_Silent_p.Y71Y|IDH3A_uc002bdf.2_Translation_Start_Site|IDH3A_uc002bdg.2_Silent_p.Y34Y	NM_005530	NP_005521	P50213	IDH3A_HUMAN	isocitrate dehydrogenase 3 (NAD+) alpha	121					carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0					NADH(DB00157)	TTGACCTTTACGCGAATGTCC	0.443000													35	140					0	0	1	0	0	
ACSBG1	23205	broad.mit.edu	37	15	78473158	78473158	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:78473158G>A	uc002bdh.2	-	9	1248	c.1192C>T	c.(1192-1194)CGA>TGA	p.R398*	ACSBG1_uc010umw.1_Nonsense_Mutation_p.R394*|ACSBG1_uc010umx.1_Nonsense_Mutation_p.R156*|ACSBG1_uc010umy.1_Nonsense_Mutation_p.R291*	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	398					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						AGCATCTTTCGCCGGATGAAG	0.657000													58	55					0	0	1	0	0	
IREB2	3658	broad.mit.edu	37	15	78732212	78732212	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:78732212G>A	uc002bdr.2	+	2	257	c.95G>A	c.(94-96)GGC>GAC	p.G32D	IREB2_uc010unb.1_5'UTR|IREB2_uc002bdq.2_Missense_Mutation_p.G32D	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	32							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		TCTAAACTTGGCACCAAGTAT	0.303000													19	21					0	0	1	0	0	
CHRNB4	1143	broad.mit.edu	37	15	78921669	78921669	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:78921669G>T	uc002bed.1	-	5	1090	c.978C>A	c.(976-978)ACC>ACA	p.T326T	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Silent_p.T144T	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	326	Cytoplasmic (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						CCATGGTGTGGGTGCTGGGCG	0.617000													18	57					4.96729e-08	5.15407e-08	1	1	0	
RASGRF1	5923	broad.mit.edu	37	15	79317734	79317734	+	Silent	SNP	G	A	A	rs113957070		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:79317734G>A	uc002beq.2	-	10	1839	c.1464C>T	c.(1462-1464)GGC>GGT	p.G488G	RASGRF1_uc002bep.2_Silent_p.G488G|RASGRF1_uc010blm.1_Silent_p.G410G|RASGRF1_uc002ber.3_Silent_p.G488G	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	488	PH 2.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						ACTGTCGCTCGCCCTCTTTCT	0.557000													23	93					0	0	1	0	0	
KIAA1024	23251	broad.mit.edu	37	15	79749908	79749908	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:79749908C>T	uc002bew.1	+	2	1494	c.1419C>T	c.(1417-1419)AGC>AGT	p.S473S	KIAA1024_uc010unk.1_Silent_p.S473S	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	473						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						ACACCAGTAGCGTGGGCACCC	0.532000													14	42					0	0	1	0	0	
STARD5	80765	broad.mit.edu	37	15	81611720	81611720	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:81611720C>T	uc002bgm.2	-	4	444	c.360G>A	c.(358-360)GTG>GTA	p.V120V	STARD5_uc002bgn.2_Silent_p.V13V	NM_181900	NP_871629	Q9NSY2	STAR5_HUMAN	StAR-related lipid transfer protein 5	120	START.				C21-steroid hormone biosynthetic process|lipid transport	cytosol	lipid binding			ovary(1)	1						TCTTGACTAGCACCAAGTCCA	0.517000													119	159					0	0	1	0	0	
AP3B2	8120	broad.mit.edu	37	15	83332340	83332340	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:83332340C>A	uc010uoh.1	-	20	2589	c.2412G>T	c.(2410-2412)AAG>AAT	p.K804N	AP3B2_uc010uoi.1_Missense_Mutation_p.K823N|AP3B2_uc010uoj.1_Missense_Mutation_p.K772N|AP3B2_uc010bmp.2_5'Flank|AP3B2_uc010uog.1_Missense_Mutation_p.K440N|AP3B2_uc002biy.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	804					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			GGGAGATCTCCTTGGTTGCAG	0.527000													19	64					1.33834e-09	1.40184e-09	1	1	0	
AKAP13	11214	broad.mit.edu	37	15	86198866	86198866	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:86198866C>T	uc002blv.1	+	11	4763	c.4593C>T	c.(4591-4593)GGC>GGT	p.G1531G	AKAP13_uc002blt.1_Silent_p.G1531G|AKAP13_uc002blu.1_Silent_p.G1531G|AKAP13_uc010bnf.1_Silent_p.G171G|AKAP13_uc002blw.1_Silent_p.G16G|AKAP13_uc010bne.1_Silent_p.G184G	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1531					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CTGACCCAGGCGACGTGGAGG	0.557000													16	87					0	0	1	0	0	
ABHD2	11057	broad.mit.edu	37	15	89698698	89698698	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:89698698C>T	uc002bnj.2	+	10	1388	c.471C>T	c.(469-471)TGC>TGT	p.C157C	ABHD2_uc002bnk.2_Silent_p.C157C	NM_007011	NP_008942	P08910	ABHD2_HUMAN	alpha/beta hydrolase domain containing protein	157						integral to membrane	carboxylesterase activity			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					GCTATCGGTGCGCCGTGCTGA	0.517000													23	99					0	0	1	0	0	
C15orf42	90381	broad.mit.edu	37	15	90163032	90163032	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:90163032G>A	uc002boe.2	+	18	3113	c.3113G>A	c.(3112-3114)CGA>CAA	p.R1038Q		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1038					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CCGAAGTCTCGAAGTGTGCAA	0.463000													51	68					0	0	1	0	0	
C15orf42	90381	broad.mit.edu	37	15	90168297	90168297	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:90168297G>A	uc002boe.2	+	20	4756	c.4756G>A	c.(4756-4758)GCT>ACT	p.A1586T	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1586					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			TTCATTAGAGGCTGAGCCCCT	0.552000													48	57					0	0	1	0	0	
TTC23	64927	broad.mit.edu	37	15	99762036	99762036	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:99762036C>T	uc002bur.2	-	5	745	c.214G>A	c.(214-216)GTA>ATA	p.V72I	TTC23_uc002bus.2_Missense_Mutation_p.V72I|TTC23_uc002but.2_Missense_Mutation_p.V72I|TTC23_uc002buu.2_Missense_Mutation_p.V72I|TTC23_uc002buv.2_Missense_Mutation_p.V72I|TTC23_uc002bux.2_Missense_Mutation_p.V72I|TTC23_uc002buw.2_Missense_Mutation_p.V72I|TTC23_uc010boq.2_RNA|TTC23_uc002buy.2_Missense_Mutation_p.V72I|TTC23_uc010bor.2_Missense_Mutation_p.V72I|TTC23_uc002buz.2_Missense_Mutation_p.V72I	NM_022905	NP_075056	Q5W5X9	TTC23_HUMAN	tetratricopeptide repeat domain 23	72	TPR 1.						binding				0	all_cancers(4;1.49e-13)|Lung NSC(78;0.000545)|all_lung(78;0.00121)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		all cancers(5;8.11e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00215)			GTCAGTGCTACGCAACGCACA	0.448000													17	50					0	0	1	0	0	
LYSMD4	145748	broad.mit.edu	37	15	100272041	100272041	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:100272041C>T	uc002bvk.2	-	2	227	c.164G>A	c.(163-165)CGC>CAC	p.R55H	LYSMD4_uc002bvj.1_Intron|LYSMD4_uc010bou.1_Intron|LYSMD4_uc002bvl.2_Missense_Mutation_p.A26T|LYSMD4_uc002bvm.2_Missense_Mutation_p.R55H|LYSMD4_uc010bov.2_Missense_Mutation_p.R55H			Q5XG99	LYSM4_HUMAN	SubName: Full=cDNA FLJ77040, highly similar to Homo sapiens LysM, putative peptidoglycan-binding, domain containing 4, mRNA; SubName: Full=LysM, putative peptidoglycan-binding, domain containing 4, isoform CRA_c;	55	Extracellular (Potential).				cell wall macromolecule catabolic process	integral to membrane					0	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00162)|LUSC - Lung squamous cell carcinoma(107;0.17)|Lung(145;0.208)			GCTCTTGTGGCGCTCCTTGCC	0.632000													8	43					0	0	1	0	0	
ADAMTS17	170691	broad.mit.edu	37	15	100514714	100514714	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:100514714T>C	uc002bvv.1	-	22	3260	c.3181A>G	c.(3181-3183)ATC>GTC	p.I1061V	ADAMTS17_uc002bvw.1_RNA	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1061	PLAC.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		TTTTCTCGGATGACCCGGCAA	0.572000													21	53					0	0	1	0	0	
CHSY1	22856	broad.mit.edu	37	15	101775512	101775512	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:101775512C>T	uc002bwt.1	-	3	1074	c.591G>A	c.(589-591)GGG>GGA	p.G197G		NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	197	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GGCCTGTCTGCCCAAGAAAGA	0.557000													20	69					0	0	1	0	0	
RHBDF1	64285	broad.mit.edu	37	16	108986	108986	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:108986G>A	uc002cfl.3	-	20	2282	c.2134C>T	c.(2134-2136)CCA>TCA	p.P712S		NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	712	Helical; (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				GCTCGGTATGGCAGGAAGATG	0.617000													21	21					0	0	1	0	0	
ARHGDIG	398	broad.mit.edu	37	16	331846	331846	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:331846G>T	uc002cgm.1	+	2	249	c.174G>T	c.(172-174)GAG>GAT	p.E58D	PDIA2_uc002cgn.1_5'UTR|PDIA2_uc010bqt.1_5'Flank|PDIA2_uc002cgo.1_5'Flank	NM_001176	NP_001167	Q99819	GDIR3_HUMAN	Rho GDP dissociation inhibitor (GDI) gamma	58					negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity			central_nervous_system(1)	1		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				GCCTCTTGGAGATCCGGCAGC	0.687000													17	11					1.99824e-07	2.06609e-07	1	1	0	
TMEM8A	58986	broad.mit.edu	37	16	426215	426215	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:426215G>A	uc002cgu.3	-	6	1274	c.1145C>T	c.(1144-1146)ACG>ATG	p.T382M	TMEM8A_uc002cgv.3_Missense_Mutation_p.T189M	NM_021259	NP_067082	Q9HCN3	TMM8A_HUMAN	transmembrane protein 8 (five membrane-spanning	382	Extracellular (Potential).				cell adhesion	integral to plasma membrane				central_nervous_system(2)|pancreas(1)	3						CACGGAGGGCGTGTCCGAACA	0.642000													10	32					0	0	1	0	0	
SOLH	6650	broad.mit.edu	37	16	603450	603450	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:603450C>T	uc002chi.2	+	14	3558	c.3195C>T	c.(3193-3195)TCC>TCT	p.S1065S	SOLH_uc002chj.2_Silent_p.S125S	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	1065					proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				GGACAGCCTCCAAGGGGACCC	0.667000													22	38					0	0	1	0	0	
WDR90	197335	broad.mit.edu	37	16	708547	708547	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:708547C>G	uc002cii.1	+	23	2843	c.2789C>G	c.(2788-2790)CCC>CGC	p.P930R	WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Missense_Mutation_p.P457R|WDR90_uc002cil.1_RNA|WDR90_uc002cim.1_Missense_Mutation_p.P104R|WDR90_uc002cin.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	930	WD 10.									ovary(1)	1		Hepatocellular(780;0.0218)				CACCCTGAGCCCTGCCCCTCC	0.662000													4	61					0	0	1	0	0	
STUB1	10273	broad.mit.edu	37	16	732226	732226	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:732226G>A	uc002cit.2	+	6	1142	c.731G>A	c.(730-732)TGC>TAC	p.C244Y	STUB1_uc002ciu.2_Missense_Mutation_p.C172Y|STUB1_uc010bqz.2_RNA|STUB1_uc002civ.2_RNA|JMJD8_uc002ciw.1_3'UTR|JMJD8_uc002cix.1_3'UTR|JMJD8_uc002ciy.1_3'UTR	NM_005861	NP_005852	Q9UNE7	CHIP_HUMAN	STIP1 homology and U-box containing protein 1	244	U-box.				cellular response to misfolded protein|DNA repair|misfolded or incompletely synthesized protein catabolic process|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein autoubiquitination|protein K63-linked ubiquitination|protein maturation|regulation of glucocorticoid metabolic process|ubiquitin-dependent SMAD protein catabolic process	cytoplasm|nuclear inclusion body|ubiquitin conjugating enzyme complex|ubiquitin ligase complex	Hsp70 protein binding|Hsp90 protein binding|kinase binding|misfolded protein binding|protein binding, bridging|protein homodimerization activity|SMAD binding|TPR domain binding|ubiquitin-ubiquitin ligase activity				0		Hepatocellular(780;0.00335)				CGGGAGCCGTGCATCACGCCC	0.637000													16	42					0	0	1	0	0	
MAPK8IP3	23162	broad.mit.edu	37	16	1818260	1818260	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:1818260A>G	uc002cmk.2	+	30	3740	c.3620A>G	c.(3619-3621)TAT>TGT	p.Y1207C	MAPK8IP3_uc002cml.2_Missense_Mutation_p.Y1201C|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.Y1208C	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	1207					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						ATCCACGTGTATGGCGATGAC	0.647000													25	69					0	0	1	0	0	
TSC2	7249	broad.mit.edu	37	16	2131648	2131648	+	Silent	SNP	G	A	A	rs137854393		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:2131648G>A	uc002con.2	+	31	3769	c.3663G>A	c.(3661-3663)TCG>TCA	p.S1221S	TSC2_uc010bsd.2_Silent_p.S1221S|TSC2_uc002coo.2_Silent_p.S1177S|TSC2_uc010uvv.1_Silent_p.S1141S|TSC2_uc010uvw.1_Silent_p.S1129S|TSC2_uc002cop.2_Silent_p.S977S|TSC2_uc002coq.2_5'Flank|TSC2_uc002cor.2_5'Flank	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	1221					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				CTTTCTCCTCGGACATCAACA	0.622000			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				29	64					0	0	1	0	0	
PKD1	5310	broad.mit.edu	37	16	2153811	2153811	+	Silent	SNP	C	T	T	rs143265128	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:2153811C>T	uc002cos.1	-	23	8456	c.8247G>A	c.(8245-8247)GCG>GCA	p.A2749A	PKD1_uc002cot.1_Silent_p.A2749A|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2749	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AGGCCTGGGACGCCACCATCC	0.667000													4	23					0	0	1	0	0	
PKD1	5310	broad.mit.edu	37	16	2168071	2168071	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:2168071C>T	uc002cos.1	-	5	1131	c.922G>A	c.(922-924)GGA>AGA	p.G308R	PKD1_uc002cot.1_Missense_Mutation_p.G308R	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	308	Extracellular (Potential).|PKD 1.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GAGCCGTCTCCGAAGTCCCAG	0.716000													4	10					0	0	1	0	0	
E4F1	1877	broad.mit.edu	37	16	2278400	2278400	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:2278400G>A	uc002cpm.2	+	2	233	c.185G>A	c.(184-186)CGC>CAC	p.R62H	E4F1_uc010bsi.2_Missense_Mutation_p.R62H|E4F1_uc010bsj.2_Missense_Mutation_p.R62H	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	62	Required for ubiquitin ligase activity.				cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						AGATGCGGCCGCTGCCAGGCA	0.657000													10	24					0	0	1	0	0	
TBC1D24	57465	broad.mit.edu	37	16	2547019	2547019	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:2547019C>T	uc002cql.2	+	2	1010	c.870C>T	c.(868-870)TTC>TTT	p.F290F	TBC1D24_uc002cqk.2_Silent_p.F290F|TBC1D24_uc002cqm.2_Silent_p.F290F|TBC1D24_uc010bsm.2_5'Flank	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	290					neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						AGAAAGCGTTCGCCATCCGCC	0.597000													21	30					0	0	1	0	0	
CEMP1	752014	broad.mit.edu	37	16	2580894	2580894	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:2580894T>C	uc002cqr.2	-	1	537	c.181A>G	c.(181-183)AAG>GAG	p.K61E	AMDHD2_uc010uwc.1_3'UTR|AMDHD2_uc010uwd.1_3'UTR	NM_001048212	NP_001041677	Q6PRD7	CEMP1_HUMAN	cementum protein 1	61						cytoplasm				skin(1)	1						ACCTCTGCCTTGACGGCCGCG	0.667000													15	18					0	0	1	0	0	
SRRM2	23524	broad.mit.edu	37	16	2815963	2815963	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:2815963C>T	uc002crk.2	+	11	5983	c.5434C>T	c.(5434-5436)CGG>TGG	p.R1812W	SRRM2_uc002crj.1_Missense_Mutation_p.R1716W|SRRM2_uc002crl.1_Missense_Mutation_p.R1812W|SRRM2_uc010bsu.1_Missense_Mutation_p.R1716W	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1812	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCGGGTTACTCGGCGGCGGAG	0.612000													24	21					0	0	1	0	0	
ZNF205	7755	broad.mit.edu	37	16	3170262	3170262	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:3170262C>T	uc002cub.2	+	7	1736	c.1601C>T	c.(1600-1602)GCC>GTC	p.A534V	ZNF205_uc002cua.2_Missense_Mutation_p.A534V	NM_001042428	NP_001035893	O95201	ZN205_HUMAN	zinc finger protein 205	534					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						AAGGCCCTGGCCATGCTGATG	0.632000													6	19					0	0	1	0	0	
CREBBP	1387	broad.mit.edu	37	16	3778706	3778706	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:3778706G>A	uc002cvv.2	-	31	6546	c.6342C>T	c.(6340-6342)GGC>GGT	p.G2114G	CREBBP_uc002cvw.2_Silent_p.G2076G	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	2114					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GGGGCTGCATGCCGGGCTGAT	0.602000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				52	123					0	0	1	0	0	
RUNDC2A	84127	broad.mit.edu	37	16	12146024	12146024	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:12146024G>A	uc002dbw.1	+	8	1131	c.1069G>A	c.(1069-1071)GTG>ATG	p.V357M	SNX29_uc002dby.3_5'Flank	NM_032167	NP_115543	Q9HA26	RUN2A_HUMAN	RUN domain containing 2A	357										ovary(1)	1						CGAAGATGACGTGTATGGAAA	0.393000			T	CIITA	PMBL|Hodgkin Lymphona|								29	69					0	0	1	0	0	
ABCC6	368	broad.mit.edu	37	16	16291892	16291892	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:16291892C>T	uc002den.3	-	10	1361	c.1324G>A	c.(1324-1326)GTC>ATC	p.V442I	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Missense_Mutation_p.V454I	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	442	ABC transmembrane type-1 1.|Helical; Name=8; (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CAGAGATAGACGAAGCAGACC	0.443000													3	8					0	0	1	0	0	
SMG1	23049	broad.mit.edu	37	16	18847464	18847464	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:18847464G>A	uc002dfm.2	-	48	8211	c.7848C>T	c.(7846-7848)TGC>TGT	p.C2616C	SMG1_uc010bwb.2_Silent_p.C2476C|SMG1_uc010bwa.2_Silent_p.C1347C	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2616					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						CCAGCTGCTCGCACTGGCTAA	0.557000													3	7					0	0	1	0	0	
IQCK	124152	broad.mit.edu	37	16	19800166	19800166	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:19800166G>A	uc002dgr.2	+	8	1311	c.612G>A	c.(610-612)CGG>CGA	p.R204R	IQCK_uc002dgs.2_RNA|IQCK_uc010vat.1_Intron|IQCK_uc010bwc.2_RNA|IQCK_uc010vau.1_Silent_p.R116R	NM_153208	NP_694940	Q8N0W5	IQCK_HUMAN	IQ motif containing K	204										skin(1)	1						TCAGCCCACGGCCGCCAATCC	0.483000													31	64					0	0	1	0	0	
GPRC5B	51704	broad.mit.edu	37	16	19883671	19883671	+	Missense_Mutation	SNP	G	A	A	rs35893239		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:19883671G>A	uc002dgt.2	-	2	605	c.497C>T	c.(496-498)GCG>GTG	p.A166V	GPRC5B_uc010vav.1_Missense_Mutation_p.A192V	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	166	Helical; Name=4; (Potential).									lung(1)|breast(1)|skin(1)	3						CAGGCACAGCGCCAGGCCCAC	0.682000													9	32					0	0	1	0	0	
PDILT	204474	broad.mit.edu	37	16	20386161	20386161	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:20386161C>T	uc002dhc.1	-	5	887	c.664G>A	c.(664-666)GTC>ATC	p.V222I		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	222					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						AACACCAGGACGCTGTCAAGG	0.363000													32	88					0	0	1	0	0	
ACSM5	54988	broad.mit.edu	37	16	20439120	20439120	+	Missense_Mutation	SNP	A	C	C	rs12921643		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:20439120A>C	uc002dhe.2	+	7	1079	c.932A>C	c.(931-933)AAA>ACA	p.K311T		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	311					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						ACTCTCTCCAAATTCCCGATA	0.478000													16	124					0	0	1	0	0	
LOC81691	81691	broad.mit.edu	37	16	20851760	20851760	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:20851760G>A	uc002dhv.2	+	15	1859	c.1596G>A	c.(1594-1596)CAG>CAA	p.Q532Q	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Silent_p.Q532Q|LOC81691_uc002dhw.2_Silent_p.Q275Q|LOC81691_uc002dhy.3_Silent_p.Q532Q	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1	532	RRM 1.					nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						GCCCAGTCCAGTCAATGACTT	0.428000													34	83					0	0	1	0	0	
DNAH3	55567	broad.mit.edu	37	16	21151866	21151866	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:21151866C>T	uc010vbe.1	-	5	687	c.687G>A	c.(685-687)TCG>TCA	p.S229S	DNAH3_uc002die.2_Silent_p.S200S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	229	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCTCCAGGTCCGATTCAGATG	0.418000													26	55					0	0	1	0	0	
SCNN1G	6340	broad.mit.edu	37	16	23208718	23208718	+	Silent	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:23208718A>C	uc002dlm.1	+	6	1186	c.1047A>C	c.(1045-1047)ACA>ACC	p.T349T		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	349	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	AGATTGAGACAGCAATGGTCA	0.448000													19	47					0	0	1	0	0	
CHP2	63928	broad.mit.edu	37	16	23768529	23768529	+	Missense_Mutation	SNP	G	A	A	rs112597134	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:23768529G>A	uc002dmb.1	+	6	845	c.422G>A	c.(421-423)CGT>CAT	p.R141H		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	141	EF-hand 3.						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)		CAGGTTCTCCGTCTGATGGTT	0.562000													8	31					0	0	1	0	0	
TNRC6A	27327	broad.mit.edu	37	16	24831653	24831653	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:24831653G>A	uc002dmm.2	+	22	5388	c.5274G>A	c.(5272-5274)TGG>TGA	p.W1758*	TNRC6A_uc010bxs.2_Nonsense_Mutation_p.W1505*|TNRC6A_uc002dmn.2_Nonsense_Mutation_p.W1456*|TNRC6A_uc002dmo.2_Nonsense_Mutation_p.W1397*|TNRC6A_uc002dmr.2_5'Flank	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	1758	Sufficient for interaction with EIF2C2.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		GTGGAGGATGGGGAAATTCTG	0.502000													13	38					0	0	1	0	0	
CLN3	1201	broad.mit.edu	37	16	28497797	28497797	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:28497797C>T	uc002dpo.2	-	8	871	c.548G>A	c.(547-549)TGG>TAG	p.W183*	uc010vct.1_Intron|CLN3_uc002dpl.2_Nonsense_Mutation_p.W105*|CLN3_uc010vcu.1_Nonsense_Mutation_p.W83*|CLN3_uc002dpn.2_Intron|CLN3_uc002dpm.2_Nonsense_Mutation_p.W129*|CLN3_uc010vcv.1_Nonsense_Mutation_p.W159*|CLN3_uc010byd.2_Nonsense_Mutation_p.W183*|CLN3_uc002dpp.2_Nonsense_Mutation_p.W183*|CLN3_uc002dpt.1_Nonsense_Mutation_p.W83*|CLN3_uc002dpq.1_Intron|CLN3_uc010bye.1_Nonsense_Mutation_p.W183*|CLN3_uc002dpr.1_Intron|CLN3_uc010byf.1_Intron|CLN3_uc002dps.1_Intron|CLN3_uc002dpu.1_Intron|CLN3_uc002dpw.1_Intron|CLN3_uc010vcw.1_Nonsense_Mutation_p.W129*|CLN3_uc002dqa.2_Nonsense_Mutation_p.W234*|CLN3_uc010vcx.1_Nonsense_Mutation_p.W83*|CLN3_uc002dpx.1_Intron|CLN3_uc002dpy.1_Intron|CLN3_uc002dpz.1_RNA	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	183	Helical; (Potential).				amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						TGAGGACCACCAGGAGATCAC	0.652000													6	15					0	0	1	0	0	
SULT1A1	6817	broad.mit.edu	37	16	28620148	28620148	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:28620148G>A	uc002dqi.2	-	1	502	c.29C>T	c.(28-30)CCG>CTG	p.P10L	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.P10L|SULT1A1_uc002dqk.2_Missense_Mutation_p.P10L|SULT1A1_uc002dql.2_Missense_Mutation_p.P10L|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Missense_Mutation_p.P101L|SULT1A1_uc002dqo.2_Missense_Mutation_p.P10L|SULT1A1_uc002dqp.2_Missense_Mutation_p.P10L	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	10					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CTCCAGTGGCGGGCGGGAGGT	0.602000													18	61					0	0	1	0	0	
RABEP2	79874	broad.mit.edu	37	16	28922469	28922469	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:28922469A>C	uc002drq.2	-	6	974	c.926T>G	c.(925-927)GTC>GGC	p.V309G	uc010vct.1_Intron|RABEP2_uc010vdf.1_Missense_Mutation_p.V238G|RABEP2_uc010byn.2_Intron|RABEP2_uc002drr.2_Missense_Mutation_p.V309G	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	309	Potential.				endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						CTCGCGACTGACGCTCTCCAG	0.537000													16	25					0	0	1	0	0	
KIF22	3835	broad.mit.edu	37	16	29816292	29816292	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:29816292C>T	uc002dts.3	+	12	1859	c.1835C>T	c.(1834-1836)CCG>CTG	p.P612L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Missense_Mutation_p.P544L|KIF22_uc010vdw.1_Missense_Mutation_p.P544L|KIF22_uc010bzf.2_Missense_Mutation_p.P558L|KIF22_uc002dtt.1_3'UTR|KIF22_uc002frc.1_RNA|MAZ_uc002dtv.1_5'Flank|MAZ_uc010vdx.1_5'Flank|MAZ_uc002dtw.2_5'Flank|MAZ_uc002dtx.2_5'Flank|MAZ_uc002dty.2_5'Flank|MAZ_uc010bzg.2_5'Flank|MAZ_uc002dtz.1_5'Flank	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	612					blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						CGCATTGGCCCGAAGAAGGCC	0.652000													7	26					0	0	1	0	0	
CD2BP2	10421	broad.mit.edu	37	16	30365563	30365563	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:30365563C>T	uc002dxr.2	-	2	412	c.159G>A	c.(157-159)GAG>GAA	p.E53E	CD2BP2_uc002dxs.2_Silent_p.E53E	NM_006110	NP_006101	O95400	CD2B2_HUMAN	CD2 antigen (cytoplasmic tail) binding protein	53					assembly of spliceosomal tri-snRNP	cytoplasm|nucleoplasm|U5 snRNP	protein binding|ribonucleoprotein binding			ovary(1)	1						CATCATCATCCTCCTCCTCAT	0.517000													75	209					0	0	1	0	0	
SRCAP	10847	broad.mit.edu	37	16	30734369	30734369	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:30734369A>G	uc002dze.1	+	24	4363	c.3978A>G	c.(3976-3978)CCA>CCG	p.P1326P	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.P1121P|SRCAP_uc010bzz.1_Silent_p.P896P	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1326	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CTGTTCCTCCATTGGCCCCAG	0.587000													7	67					0	0	1	0	0	
SRCAP	10847	broad.mit.edu	37	16	30745251	30745251	+	Silent	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:30745251A>T	uc002dze.1	+	30	6916	c.6531A>T	c.(6529-6531)CTA>CTT	p.L2177L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.L1972L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2177	Helicase C-terminal.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AGAACATCCTAAAAAAGGCAA	0.463000													7	19					0	0	1	0	0	
SETD1A	9739	broad.mit.edu	37	16	30991058	30991058	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:30991058C>A	uc002ead.1	+	14	4637	c.3951C>A	c.(3949-3951)CCC>CCA	p.P1317P		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1317					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						CCCTGCGGCCCCCGGAGCCAG	0.721000													6	12					0.0215528	0.0216017	1	1	0	
ZNF646	9726	broad.mit.edu	37	16	31091754	31091754	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:31091754G>A	uc002eap.2	+	2	4398	c.4109G>A	c.(4108-4110)GGC>GAC	p.G1370D		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1370	C2H2-type 25.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						GCCCTCTGTGGCCGCAGCTTC	0.667000													9	28					0	0	1	0	0	
BCKDK	10295	broad.mit.edu	37	16	31123563	31123563	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:31123563C>A	uc002eaw.3	+	12	1532	c.1216C>A	c.(1216-1218)CGG>AGG	p.R406R	BCKDK_uc002eav.3_3'UTR|BCKDK_uc010cah.2_RNA|BCKDK_uc010cai.2_3'UTR	NM_005881	NP_005872	O14874	BCKD_HUMAN	branched chain ketoacid dehydrogenase kinase	406					branched chain family amino acid catabolic process|peptidyl-histidine phosphorylation	mitochondrial alpha-ketoglutarate dehydrogenase complex	[3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase activity|ATP binding|protein binding|protein serine/threonine kinase activity|two-component sensor activity			stomach(1)|breast(1)	2						CATCGATGGCCGGGAGGAAAG	0.682000													13	30					1.3612e-06	1.40332e-06	1	1	0	
ARMC5	79798	broad.mit.edu	37	16	31473294	31473294	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:31473294G>A	uc002ecc.2	+	2	1056	c.527G>A	c.(526-528)CGT>CAT	p.R176H	ARMC5_uc010vfn.1_Missense_Mutation_p.R271H|ARMC5_uc010vfo.1_Missense_Mutation_p.R208H|ARMC5_uc002eca.3_Missense_Mutation_p.R176H|ARMC5_uc010vfp.1_Missense_Mutation_p.R176H|ARMC5_uc002ecb.2_Missense_Mutation_p.R176H	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	176	ARM 1.						binding			pancreas(1)	1						CGAACGGCCCGTGCCCTGGGG	0.562000													14	31					0	0	1	0	0	
HERC2P4	440362	broad.mit.edu	37	16	32163561	32163561	+	RNA	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:32163561G>A	uc002ecx.2	-	2		c.210C>T				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						CAATTTGGCCGCCCAGGCACA	0.582000													6	38					0	0	1	0	0	
SHCBP1	79801	broad.mit.edu	37	16	46615864	46615864	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:46615864C>T	uc002eec.3	-	13	1836	c.1796G>A	c.(1795-1797)TGT>TAT	p.C599Y		NM_024745	NP_079021	Q8NEM2	SHCBP_HUMAN	SHC SH2-domain binding protein 1	599										ovary(1)|breast(1)	2		all_cancers(37;0.00404)|all_epithelial(9;0.00527)|all_lung(18;0.0413)|Lung NSC(13;0.213)				AGTTCTTGCACAAAGCTCCAT	0.423000													35	79					0	0	1	0	0	
DNAJA2	10294	broad.mit.edu	37	16	47001471	47001471	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:47001471C>A	uc002eeo.2	-	5	673	c.531G>T	c.(529-531)GGG>GGT	p.G177G	DNAJA2_uc002eep.2_Silent_p.G94G	NM_005880	NP_005871	O60884	DNJA2_HUMAN	DnaJ subfamily A member 2	177	CR-type.				positive regulation of cell proliferation|protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			lung(1)	1		all_cancers(37;0.00125)|all_lung(18;0.00338)|all_epithelial(9;0.00358)|Lung NSC(13;0.0309)|Breast(268;0.116)				GTTGTACCATCCCTGGAGCCA	0.493000													29	67					4.22769e-11	4.45738e-11	1	1	0	
ITFG1	81533	broad.mit.edu	37	16	47192809	47192809	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:47192809A>G	uc002eet.2	-	17	1816	c.1754T>C	c.(1753-1755)ATT>ACT	p.I585T	ITFG1_uc010vgg.1_Missense_Mutation_p.I330T|ITFG1_uc010vgh.1_Silent_p.N453N	NM_030790	NP_110417	Q8TB96	TIP_HUMAN	integrin alpha FG-GAP repeat containing 1	585	Helical; (Potential).					extracellular region|integral to membrane				ovary(1)|central_nervous_system(1)	2		all_cancers(37;0.0613)|all_lung(18;0.0543)|Lung NSC(13;0.227)				TAAAATGCCAATTATTGCCAA	0.333000													24	55					0	0	1	0	0	
C16orf78	123970	broad.mit.edu	37	16	49430587	49430587	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:49430587C>T	uc002efr.2	+	4	691	c.648C>T	c.(646-648)TGC>TGT	p.C216C		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	216										central_nervous_system(1)	1						TGCTGAGCTGCCGGTGAGAGC	0.552000													9	15					0	0	1	0	0	
ZNF423	23090	broad.mit.edu	37	16	49669865	49669865	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:49669865G>A	uc002efs.2	-	5	3496	c.3198C>T	c.(3196-3198)TGC>TGT	p.C1066C	ZNF423_uc010vgn.1_Silent_p.C949C	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	1066	C2H2-type 25; degenerate.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GGCACAGGGCGCACTTGTAGA	0.642000													9	9					0	0	1	0	0	
CYLD	1540	broad.mit.edu	37	16	50785592	50785592	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:50785592C>T	uc002egp.1	+	5	997	c.582C>T	c.(580-582)GGC>GGT	p.G194G	CYLD_uc002egn.1_Silent_p.G194G|CYLD_uc002ego.2_Silent_p.G194G|CYLD_uc010cbs.1_Silent_p.G194G|CYLD_uc002egq.1_Silent_p.G194G|CYLD_uc002egr.1_Silent_p.G194G|CYLD_uc002egs.1_Silent_p.G194G	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	194	CAP-Gly 1.|Interaction with TRIP.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				AAGATTGTGGCGTGTTTGTTG	0.458000			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				30	112					0	0	1	0	0	
FAM192A	80011	broad.mit.edu	37	16	57188381	57188381	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:57188381T>G	uc010vhk.1	-	7	845	c.586A>C	c.(586-588)AGT>CGT	p.S196R	FAM192A_uc002ekz.3_Missense_Mutation_p.S195R|FAM192A_uc002ekv.3_Missense_Mutation_p.S118R|FAM192A_uc002ekw.3_Missense_Mutation_p.S195R|FAM192A_uc002ekx.3_Missense_Mutation_p.S195R|FAM192A_uc002eky.3_Missense_Mutation_p.S195R	NM_024946	NP_079222	Q9GZU8	F192A_HUMAN	NEFA-interacting nuclear protein NIP30	196						nucleus					0						GAGGGGCCACTCAGGGAGGTG	0.557000													3	14					0	0	1	0	0	
KIFC3	3801	broad.mit.edu	37	16	57794222	57794222	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:57794222C>T	uc002emp.2	-	17	2536	c.2339G>A	c.(2338-2340)GGG>GAG	p.G780E	KIFC3_uc010vhw.1_Missense_Mutation_p.G678E|KIFC3_uc002emn.2_RNA|KIFC3_uc002emm.2_Missense_Mutation_p.G641E|KIFC3_uc010vhx.1_Missense_Mutation_p.G638E|KIFC3_uc010cdf.2_Missense_Mutation_p.G641E|KIFC3_uc002emo.3_Missense_Mutation_p.G641E|KIFC3_uc010vhy.1_Missense_Mutation_p.G722E|KIFC3_uc002emq.2_Missense_Mutation_p.G780E|KIFC3_uc010vhz.1_Missense_Mutation_p.G802E	NM_005550	NP_005541	Q9BVG8	KIFC3_HUMAN	kinesin family member C3 isoform 1	780					epithelial cell-cell adhesion|microtubule-based movement|visual perception|zonula adherens maintenance	centrosome|cytoplasmic vesicle membrane|kinesin complex|microtubule|zonula adherens	ATP binding|microtubule motor activity			central_nervous_system(2)|ovary(1)	3		all_neural(199;0.224)				TGACCAGGACCCAAGCTCTGC	0.617000													18	50					0	0	1	0	0	
MMP15	4324	broad.mit.edu	37	16	58073833	58073833	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:58073833C>T	uc002ena.2	+	4	1468	c.495C>T	c.(493-495)CGC>CGT	p.R165R		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	165	Extracellular (Potential).				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						AGGCGGTGCGCAGGGCCTTCC	0.657000													7	25					0	0	1	0	0	
CDH8	1006	broad.mit.edu	37	16	61689541	61689541	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:61689541T>C	uc002eog.1	-	11	1991	c.1739A>G	c.(1738-1740)GAT>GGT	p.D580G		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	580	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		ATTTCCACTATCACTGATTAT	0.423000													14	38					0	0	1	0	0	
CDH11	1009	broad.mit.edu	37	16	65026835	65026835	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:65026835G>A	uc002eoi.2	-	5	1060	c.626C>T	c.(625-627)TCG>TTG	p.S209L	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.S209L|CDH11_uc010vin.1_Missense_Mutation_p.S83L	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	209	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TGCTTCCACCGAAAAATAGGG	0.428000			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			13	38					0	0	1	0	0	
CDH11	1009	broad.mit.edu	37	16	65032614	65032614	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:65032614G>A	uc002eoi.2	-	4	808	c.374C>T	c.(373-375)ACG>ATG	p.T125M	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.T125M|CDH11_uc010vin.1_Translation_Start_Site|CDH11_uc010vio.1_Missense_Mutation_p.T125M	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	125	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		AGCCATCAACGTGTACTGGGC	0.527000			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			16	38					0	0	1	0	0	
CDH5	1003	broad.mit.edu	37	16	66424452	66424452	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:66424452A>G	uc002eom.3	+	6	1084	c.928A>G	c.(928-930)ACA>GCA	p.T310A	CDH5_uc002eon.1_Missense_Mutation_p.T310A	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	310	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		CACCATTGAGACAAACCCCGC	0.557000													13	23					0	0	1	0	0	
TPPP3	51673	broad.mit.edu	37	16	67425007	67425007	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:67425007G>A	uc002esz.2	-	1	843	c.8C>T	c.(7-9)GCG>GTG	p.A3V	TPPP3_uc002eta.2_Missense_Mutation_p.A3V|TPPP3_uc002etb.2_Missense_Mutation_p.A3V	NM_016140	NP_057224	Q9BW30	TPPP3_HUMAN	tubulin polymerization-promoting protein family	3					microtubule bundle formation	cytoplasm|microtubule	calcium ion binding|tubulin binding			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0336)|Epithelial(162;0.0781)		GTCTGTGCTCGCTGCCATGCC	0.597000													8	23					0	0	1	0	0	
ATP6V0D1	9114	broad.mit.edu	37	16	67472918	67472918	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:67472918C>T	uc002ete.1	-	6	872	c.772G>A	c.(772-774)GCT>ACT	p.A258T	ATP6V0D1_uc010vjo.1_Missense_Mutation_p.A299T|ATP6V0D1_uc010vjn.1_Missense_Mutation_p.A181T	NM_004691	NP_004682	P61421	VA0D1_HUMAN	ATPase, H+ transporting, lysosomal, V0 subunit	258					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0439)|Epithelial(162;0.101)		TAGTCGTCAGCCCGAGCCAGC	0.602000													35	92					0	0	1	0	0	
GFOD2	81577	broad.mit.edu	37	16	67709072	67709072	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:67709072G>A	uc002eub.2	-	3	1439	c.1144C>T	c.(1144-1146)CGG>TGG	p.R382W	GFOD2_uc002eua.1_RNA|GFOD2_uc002euc.2_Missense_Mutation_p.R277W	NM_030819	NP_110446	Q3B7J2	GFOD2_HUMAN	glucose-fructose oxidoreductase domain	382						proteinaceous extracellular matrix	binding|oxidoreductase activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0151)|Epithelial(162;0.0505)|all cancers(182;0.242)		AGGTTGTTCCGCTGAAGTGCC	0.627000													40	60					0	0	1	0	0	
THAP11	57215	broad.mit.edu	37	16	67877120	67877120	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:67877120C>A	uc002euo.2	+	1	908	c.663C>A	c.(661-663)GCC>GCA	p.A221A	CENPT_uc002eun.3_Intron	NM_020457	NP_065190	Q96EK4	THA11_HUMAN	THAP domain containing 11	221	Ala-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|identical protein binding|metal ion binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00412)|Epithelial(162;0.018)|all cancers(182;0.118)		TGGAGGCTGCCGAGTGCCCTA	0.652000													38	42					6.70999e-13	7.12558e-13	1	1	0	
SLC7A6	9057	broad.mit.edu	37	16	68330642	68330642	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:68330642G>A	uc002evt.1	+	11	1691	c.1382G>A	c.(1381-1383)GGA>GAA	p.G461E	SLC7A6_uc002evu.1_Missense_Mutation_p.G461E|SLC7A6_uc002evv.1_RNA|SLC7A6_uc010cfc.1_RNA	NM_001076785	NP_001070253	Q92536	YLAT2_HUMAN	solute carrier family 7 (cationic amino acid	461	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|antiporter activity			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.034)|Epithelial(162;0.0948)		GCCCTTTCTGGAGTCCCTTTC	0.507000													32	84					0	0	1	0	0	
COG8	84342	broad.mit.edu	37	16	69368940	69368940	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:69368940C>T	uc002ewy.2	-	3	968	c.897G>A	c.(895-897)CTG>CTA	p.L299L	COG8_uc002ewz.3_Silent_p.L299L	NM_032382	NP_115758	Q96MW5	COG8_HUMAN	component of oligomeric golgi complex 8	299					protein transport	Golgi membrane|Golgi transport complex				ovary(1)	1						CAGGGGGCAGCAGTGGGTCCT	0.532000													12	24					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	70995976	70995976	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:70995976G>A	uc002ezr.2	-	38	5979	c.5851C>T	c.(5851-5853)CGA>TGA	p.R1951*		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1952										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GAGATCCCTCGGCTCAGCGAT	0.502000													4	50					0	0	1	0	0	
FTSJD1	55783	broad.mit.edu	37	16	71318132	71318132	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:71318132C>G	uc010cga.2	-	3	2098	c.1692G>C	c.(1690-1692)GAG>GAC	p.E564D	FTSJD1_uc002ezy.3_Missense_Mutation_p.E564D|FTSJD1_uc002ezz.3_Missense_Mutation_p.E564D	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	564						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						CCTGAAGGCACTCAGTAAGGC	0.408000													16	38					0	0	1	0	0	
MARVELD3	91862	broad.mit.edu	37	16	71674726	71674726	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:71674726C>T	uc002fau.2	+	3	1092	c.1029C>T	c.(1027-1029)CGC>CGT	p.R343R	PHLPP2_uc002fav.2_RNA|MARVELD3_uc010cge.2_3'UTR	NM_001017967	NP_001017967	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane				skin(1)	1		Ovarian(137;0.125)				TCTATGCCCGCAAGGGTCTCA	0.587000													17	42					0	0	1	0	0	
PHLPP2	23035	broad.mit.edu	37	16	71683921	71683921	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:71683921G>A	uc002fax.2	-	18	2850	c.2844C>T	c.(2842-2844)TGC>TGT	p.C948C	PHLPP2_uc002fav.2_Intron|PHLPP2_uc010cgf.2_Silent_p.C881C	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	948	PP2C-like.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						TCCGGGTACAGCAGGTTACCC	0.483000													5	39					0	0	1	0	0	
ZFHX3	463	broad.mit.edu	37	16	72993867	72993867	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:72993867G>A	uc002fck.2	-	2	851	c.178C>T	c.(178-180)CGC>TGC	p.R60C	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	60					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TCCGCGAGGCGCTCATTGAAG	0.667000													7	17					0	0	1	0	0	
LOC283922	283922	broad.mit.edu	37	16	74372765	74372765	+	Missense_Mutation	SNP	T	C	C	rs2549261	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:74372765T>C	uc002fcr.2	-	9	1540	c.194A>G	c.(193-195)CAC>CGC	p.H65R	LOC283922_uc010vms.1_RNA					Homo sapiens cDNA FLJ39449 fis, clone PROST2008360, highly similar to Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit (PDPR), mRNA.												0						GAAGTCCCAGTGGGGAACCTT	0.502000													6	41					0	0	1	0	0	
GLG1	2734	broad.mit.edu	37	16	74519763	74519763	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:74519763C>T	uc002fcy.3	-	9	1552	c.1502G>A	c.(1501-1503)CGA>CAA	p.R501Q	GLG1_uc002fcx.2_Missense_Mutation_p.R501Q|GLG1_uc002fcw.3_Missense_Mutation_p.R490Q|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	501	Extracellular (Potential).|Cys-rich GLG1 7.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						ATTCAAAGCTCGATCAATGCG	0.388000													43	84					0	0	1	0	0	
DYNLRB2	83657	broad.mit.edu	37	16	80577198	80577198	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:80577198G>T	uc002ffo.2	+	4	149	c.29G>T	c.(28-30)AGG>ATG	p.R10M	DYNLRB2_uc002ffp.2_RNA|DYNLRB2_uc002ffq.2_RNA	NM_130897	NP_570967	Q8TF09	DLRB2_HUMAN	dynein, light chain, roadblock-type 2	10					microtubule-based movement|transport	cytoplasmic dynein complex|microtubule	microtubule motor activity				0						ACCTTAAAGAGGATCCAGAGT	0.428000													25	85					9.39395e-14	9.9938e-14	1	1	0	
HSDL1	83693	broad.mit.edu	37	16	84163278	84163278	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:84163278C>T	uc002fhk.2	-	5	953	c.769G>A	c.(769-771)GCA>ACA	p.A257T	HSDL1_uc010vnv.1_Missense_Mutation_p.A202T	NM_031463	NP_113651	Q3SXM5	HSDL1_HUMAN	hydroxysteroid dehydrogenase like 1 isoform a	257						mitochondrion	oxidoreductase activity|protein binding				0						TTGCTGGGTGCTGTCATGCTG	0.453000													28	64					0	0	1	0	0	
KCNG4	93107	broad.mit.edu	37	16	84270675	84270675	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:84270675G>A	uc010voc.1	-	2	538	c.417C>T	c.(415-417)TGC>TGT	p.C139C	KCNG4_uc002fhu.1_Silent_p.C139C	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	139	Helical; Name=Segment S1; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						AGGACAGCGCGCACATCTCCT	0.652000													9	29					0	0	1	0	0	
USP10	9100	broad.mit.edu	37	16	84812550	84812550	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:84812550C>T	uc002fii.2	+	14	2401	c.2259C>T	c.(2257-2259)GAC>GAT	p.D753D	USP10_uc010voe.1_Silent_p.D757D|USP10_uc010vof.1_Silent_p.D315D|USP10_uc002fij.2_Silent_p.D279D	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	753					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						ACACTACAGACGTCTTCCAGA	0.557000													11	23					0	0	1	0	0	
ZCCHC14	23174	broad.mit.edu	37	16	87445164	87445164	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:87445164C>T	uc002fjz.1	-	12	2779	c.2752G>A	c.(2752-2754)GCC>ACC	p.A918T	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Missense_Mutation_p.A694T	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	918	CCHC-type.				cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		CAGTCCTGGGCGCGGTGACCA	0.612000													50	110					0	0	1	0	0	
BANP	54971	broad.mit.edu	37	16	88066731	88066731	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:88066731C>T	uc002fkr.2	+	9	1277	c.1053C>T	c.(1051-1053)ACC>ACT	p.T351T	BANP_uc002fkp.2_Silent_p.T321T|BANP_uc002fkq.2_Silent_p.T321T|BANP_uc010vow.1_Silent_p.T359T|BANP_uc002fks.3_Silent_p.T320T|BANP_uc002fko.1_Silent_p.T257T|BANP_uc010vov.1_Silent_p.T326T	NM_079837	NP_524576	Q8N9N5	BANP_HUMAN	BTG3 associated nuclear protein isoform b	352	DNA-binding (By similarity).				cell cycle|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0				BRCA - Breast invasive adenocarcinoma(80;0.00551)		TGATGAGCACCCCACCTCCTG	0.652000													5	16					0	0	1	0	0	
CDT1	81620	broad.mit.edu	37	16	88874589	88874589	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:88874589T>C	uc002flu.2	+	10	1598	c.1544T>C	c.(1543-1545)ATC>ACC	p.I515T		NM_030928	NP_112190	Q9H211	CDT1_HUMAN	chromatin licensing and DNA replication factor	515					DNA replication|DNA replication checkpoint|M/G1 transition of mitotic cell cycle|regulation of DNA-dependent DNA replication initiation|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0476)		CTCCACCGCATCCGCACCGAC	0.667000													5	11					0	0	1	0	0	
ANKRD11	29123	broad.mit.edu	37	16	89349023	89349023	+	Silent	SNP	C	T	T	rs143428884	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:89349023C>T	uc002fmx.1	-	9	4388	c.3927G>A	c.(3925-3927)ACG>ACA	p.T1309T	ANKRD11_uc002fmy.1_Silent_p.T1309T|ANKRD11_uc002fnc.1_Silent_p.T1309T|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Silent_p.T1266T	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1309	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GCCCTCGGTCCGTGAAGCTGT	0.572000													22	38					0	0	1	0	0	
FANCA	2175	broad.mit.edu	37	16	89871710	89871710	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:89871710G>A	uc002fou.1	-	7	729	c.687C>T	c.(685-687)GAC>GAT	p.D229D	FANCA_uc010vpn.1_Silent_p.D229D|FANCA_uc002fov.1_Silent_p.D212D|FANCA_uc002fow.1_Silent_p.D229D|FANCA_uc002fox.1_Silent_p.D229D|FANCA_uc010ciu.1_Silent_p.D197D|FANCA_uc002foy.2_Silent_p.D229D	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	229					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		CCCTGGCGACGTCAGCATGCT	0.522000			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				7	19					0	0	1	0	0	
SLC43A2	124935	broad.mit.edu	37	17	1486601	1486601	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:1486601C>T	uc002fsv.2	-	11	1336	c.1247G>A	c.(1246-1248)CGG>CAG	p.R416Q	SLC43A2_uc002fsu.2_Missense_Mutation_p.R420Q	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	416					cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)		CTGGATCTGCCGGTCCCGCTT	0.607000													45	23					0	0	1	0	0	
TRPV1	7442	broad.mit.edu	37	17	3470151	3470151	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:3470151G>A	uc010vrr.1	-	15	3005	c.2478C>T	c.(2476-2478)GAC>GAT	p.D826D	TRPV1_uc010vro.1_Silent_p.D837D|TRPV1_uc010vrp.1_Silent_p.D766D|TRPV1_uc010vrq.1_Silent_p.D824D|TRPV1_uc010vrs.1_Silent_p.D826D|TRPV1_uc010vrt.1_Silent_p.D826D|TRPV1_uc010vru.1_Silent_p.D826D	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	826	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	AGACCTCAGCGTCCTCTGGCT	0.577000													20	12					0	0	1	0	0	
TAX1BP3	30851	broad.mit.edu	37	17	3567173	3567173	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:3567173C>T	uc002fwc.2	-	4	397	c.244G>A	c.(244-246)GGC>AGC	p.G82S	P2RX5_uc002fwd.2_RNA|TAX1BP3_uc002fwe.1_3'UTR	NM_014604	NP_055419	O14907	TX1B3_HUMAN	Tax1 binding protein 3	82	PDZ.				activation of Cdc42 GTPase activity|negative regulation of protein localization at cell surface|negative regulation of Wnt receptor signaling pathway|Rho protein signal transduction|Wnt receptor signaling pathway	cytoplasm|nucleus	protein C-terminus binding				0				COAD - Colon adenocarcinoma(5;0.0761)		ATGTCCCAGCCGTTCACCTGG	0.652000													8	10					0	0	1	0	0	
TAX1BP3	30851	broad.mit.edu	37	17	3567980	3567980	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:3567980G>A	uc002fwc.2	-	2	305	c.152C>T	c.(151-153)ACG>ATG	p.T51M	P2RX5_uc002fwd.2_RNA|TAX1BP3_uc002fwe.1_Missense_Mutation_p.T51M	NM_014604	NP_055419	O14907	TX1B3_HUMAN	Tax1 binding protein 3	51	PDZ.				activation of Cdc42 GTPase activity|negative regulation of protein localization at cell surface|negative regulation of Wnt receptor signaling pathway|Rho protein signal transduction|Wnt receptor signaling pathway	cytoplasm|nucleus	protein C-terminus binding				0				COAD - Colon adenocarcinoma(5;0.0761)		CACCTTGTCCGTCTTGTCTTC	0.567000													36	15					0	0	1	0	0	
GP1BA	2811	broad.mit.edu	37	17	4836597	4836597	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:4836597G>A	uc010vsq.1	+	2	773	c.698G>A	c.(697-699)CGT>CAT	p.R233H	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	233											0						CTCTATTTTCGTCGCTGGCTG	0.498000													23	49					0	0	1	0	0	
TNK1	8711	broad.mit.edu	37	17	7287072	7287072	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:7287072G>A	uc002ggi.3	+	5	631	c.471G>A	c.(469-471)CCG>CCA	p.P157P	TNK1_uc002ggj.3_Silent_p.P157P|TNK1_uc010cmf.2_RNA|TNK1_uc002ggk.3_5'Flank	NM_003985	NP_003976	Q13470	TNK1_HUMAN	tyrosine kinase, non-receptor, 1	157	Protein kinase.				protein autophosphorylation	membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(122;0.157)				CCGAAGGCCCGATGGGCACAG	0.627000													3	9					0	0	1	0	0	
ZBTB4	57659	broad.mit.edu	37	17	7366256	7366256	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:7366256G>A	uc002ghc.3	-	4	2295	c.2045C>T	c.(2044-2046)GCC>GTC	p.A682V	ZBTB4_uc002ghd.3_Missense_Mutation_p.A682V	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	682					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		CCCCACACTGGCACCTCCAGC	0.612000													52	45					0	0	1	0	0	
TP53	7157	broad.mit.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:7578403C>T	uc002gim.2	-	5	721	c.527G>A	c.(526-528)TGC>TAC	p.C176Y	TP53_uc002gig.1_Missense_Mutation_p.C176Y|TP53_uc002gih.2_Missense_Mutation_p.C176Y|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.C44Y|TP53_uc010cng.1_Missense_Mutation_p.C44Y|TP53_uc002gii.1_Missense_Mutation_p.C44Y|TP53_uc010cnh.1_Missense_Mutation_p.C176Y|TP53_uc010cni.1_Missense_Mutation_p.C176Y|TP53_uc002gij.2_Missense_Mutation_p.C176Y|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.C83Y|TP53_uc002gio.2_Missense_Mutation_p.C44Y|TP53_uc010vug.1_Missense_Mutation_p.C137Y	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	176	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).	Zinc.	CP -> FS (in a sporadic cancer; somatic mutation).|C -> S (in sporadic cancers; somatic mutation).|C -> R (in sporadic cancers; somatic mutation).|C -> G (in sporadic cancers; somatic mutation).|C -> W (in sporadic cancers; somatic mutation).|C -> Y (in sporadic cancers; somatic mutation).|C -> F (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.C176F(102)|p.C176Y(56)|p.C176S(19)|p.C176W(11)|p.C176R(8)|p.C176fs*71(7)|p.0?(7)|p.C176*(6)|p.C176_R181delCPHHER(3)|p.R174fs*24(3)|p.C176G(3)|p.C176fs*5(3)|p.R175_E180delRCPHHE(3)|p.V173fs*59(2)|p.R174fs*1(2)|p.V157_C176del20(1)|p.K164_P219del(1)|p.C176fs*65(1)|p.C176_P177delCP(1)|p.V173fs*69(1)|p.C176fs*68(1)|p.E171fs*61(1)|p.V173fs*23(1)|p.R174_H178>S(1)|p.C44Y(1)|p.V172_E180delVVRRCPHHE(1)|p.R174_H179delRRCPHH(1)|p.E171fs*1(1)|p.R175_H178>X(1)|p.R42fs*24(1)|p.C83Y(1)|p.C176fs*72(1)|p.R174_C176delRRC(1)|p.H168fs*69(1)|p.R174fs*70(1)|p.C176del(1)|p.E171_H179delEVVRRCPHH(1)|p.R81fs*24(1)|p.R174_E180>K(1)|p.C176fs*6(1)|p.R174fs*3(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ATGGTGGGGGCAGCGCCTCAC	0.652000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			29	19					0	0	1	0	0	
DNAH2	146754	broad.mit.edu	37	17	7735951	7735951	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:7735951G>A	uc002giu.1	+	82	12795	c.12781G>A	c.(12781-12783)GTG>ATG	p.V4261M		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	4261					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GGCCATGCGTGTGGAGCAGTT	0.582000													94	49					0	0	1	0	0	
MYH10	4628	broad.mit.edu	37	17	8383817	8383817	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:8383817C>T	uc002gll.2	-	37	5294	c.5198G>A	c.(5197-5199)CGT>CAT	p.R1733H	MYH10_uc002glm.2_Missense_Mutation_p.R1764H|MYH10_uc010cnx.2_Missense_Mutation_p.R1742H	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1733	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						AGCTTCCAGACGCCGCTTCTC	0.572000													19	4					0	0	1	0	0	
WDR16	146845	broad.mit.edu	37	17	9503394	9503394	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:9503394A>G	uc002gly.2	+	6	716	c.647A>G	c.(646-648)GAT>GGT	p.D216G	WDR16_uc002glz.2_Missense_Mutation_p.D148G|WDR16_uc010coc.2_Missense_Mutation_p.D226G	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	216						cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GTGGATGATGATGATAGCTTT	0.289000													73	45					0	0	1	0	0	
GAS7	8522	broad.mit.edu	37	17	10101597	10101597	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:10101597G>A	uc002gmg.1	-	1	272	c.111C>T	c.(109-111)GGC>GGT	p.G37G		NM_201433	NP_958839	O60861	GAS7_HUMAN	growth arrest-specific 7 isoform c	37	SH3.				cell cycle arrest	cytoplasm	sequence-specific DNA binding transcription factor activity			lung(1)|pancreas(1)	2						CCCACCAGCCGCCGTCCGGGA	0.721000			T	MLL	AML*								16	10					0	0	1	0	0	
MYH2	4620	broad.mit.edu	37	17	10426958	10426958	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:10426958T>A	uc010coi.2	-	37	5455	c.5327A>T	c.(5326-5328)AAG>ATG	p.K1776M	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.K1776M|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1776	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTGCTCCTTCTTCAGCTCCTC	0.493000													10	136					0	0	1	0	0	
TTC19	54902	broad.mit.edu	37	17	15928377	15928377	+	Silent	SNP	C	T	T	rs149658292		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:15928377C>T	uc002gph.1	+	8	1104	c.1086C>T	c.(1084-1086)GAC>GAT	p.D362D	TTC19_uc010cox.1_RNA|TTC19_uc002gpk.3_Silent_p.D4D|TTC19_uc002gpj.2_Silent_p.D4D	NM_017775	NP_060245	Q6DKK2	TTC19_HUMAN	tetratricopeptide repeat domain 19	241	TPR 3.				cell cycle|cytokinesis|mitochondrial respiratory chain complex III assembly	centrosome|midbody|mitochondrial inner membrane	protein binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TGTGCTTAGACGCCTGTGCTC	0.473000													23	45					0	0	1	0	0	
NCOR1	9611	broad.mit.edu	37	17	15967444	15967444	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:15967444C>T	uc002gpo.2	-	35	5399	c.5159G>A	c.(5158-5160)CGG>CAG	p.R1720Q	NCOR1_uc002gpn.2_Missense_Mutation_p.R1736Q|NCOR1_uc002gpm.2_Missense_Mutation_p.R240Q|NCOR1_uc010vwb.1_Missense_Mutation_p.R304Q|NCOR1_uc010coy.2_Missense_Mutation_p.R628Q|NCOR1_uc010vwc.1_Missense_Mutation_p.R530Q	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1720	Interaction with ETO.|Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		ctccttctcccgctcccgttc	0.383000													19	45					0	0	1	0	0	
CCDC144A	9720	broad.mit.edu	37	17	16664902	16664902	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:16664902T>C	uc002gqk.1	+	13	3612	c.3536T>C	c.(3535-3537)GTA>GCA	p.V1179A	CCDC144A_uc002gql.1_Missense_Mutation_p.V695A|LOC162632_uc010cpj.1_RNA	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	1179	Potential.										0						CAAGAAGTAGTAAACCTCAAA	0.338000													20	11					0	0	1	0	0	
MAP2K3	5606	broad.mit.edu	37	17	21216802	21216802	+	Splice_Site	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:21216802A>G	uc002gys.2	+	11	1180	c.915_splice	c.e11-2	p.C305_splice	MAP2K3_uc002gyt.2_Splice_Site_p.C276_splice|MAP2K3_uc002gyu.2_Splice_Site_p.C276_splice	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3						activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		ATTCTCTCCTAGCCTGAGGAA	0.652000													4	27					0	0	1	0	0	
VTN	7448	broad.mit.edu	37	17	26697012	26697012	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:26697012A>G	uc002hbc.2	-	2	269	c.120T>C	c.(118-120)TGT>TGC	p.C40C	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	40	SMB.				cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	AGAGCTCGTCACACTGGCACT	0.597000													10	40					0	0	1	0	0	
NEK8	284086	broad.mit.edu	37	17	27064895	27064895	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:27064895C>A	uc002hcp.2	+	7	948	c.948C>A	c.(946-948)GCC>GCA	p.A316A		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	316	RCC1 1.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					CAGTGTATGCCTGGGGTGGTG	0.637000													34	56					8.4185e-14	8.96147e-14	1	1	0	
CPD	1362	broad.mit.edu	37	17	28773000	28773000	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:28773000A>G	uc002hfb.1	+	12	2850	c.2835A>G	c.(2833-2835)GGA>GGG	p.G945G	CPD_uc010wbo.1_Silent_p.G698G|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	945	Extracellular (Potential).|Carboxypeptidase-like 3.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						TTCTGAGAGGACTTGTAATGA	0.363000													7	77					0	0	1	0	0	
TMEM132E	124842	broad.mit.edu	37	17	32962034	32962034	+	Silent	SNP	C	T	T	rs140125786		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:32962034C>T	uc002hif.2	+	8	1963	c.1635C>T	c.(1633-1635)GGC>GGT	p.G545G		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	545	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		TGCGGGTGGGCGATCCCCGAG	0.612000													8	24					0	0	1	0	0	
TMEM132E	124842	broad.mit.edu	37	17	32964652	32964652	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:32964652G>A	uc002hif.2	+	10	2684	c.2356G>A	c.(2356-2358)GGC>AGC	p.G786S		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	786	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		GCTGCCCACCGGCTTCCTGCA	0.692000													13	35					0	0	1	0	0	
ZNF830	91603	broad.mit.edu	37	17	33288913	33288913	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:33288913G>A	uc002hih.3	+	1	365	c.328G>A	c.(328-330)GAC>AAC	p.D110N	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	110					cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				GGACGCAGACGACCAAGATGT	0.567000													32	56					0	0	1	0	0	
AMAC1	146861	broad.mit.edu	37	17	33520662	33520662	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:33520662A>G	uc002hjd.2	-	1	751	c.665T>C	c.(664-666)GTG>GCG	p.V222A		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	222	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		TAGGAAGGCCACTGTTGGGAG	0.627000													23	62					0	0	1	0	0	
MYO19	80179	broad.mit.edu	37	17	34883424	34883424	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:34883424C>T	uc010wcy.1	-	6	1250	c.258G>A	c.(256-258)TCG>TCA	p.S86S	MYO19_uc002hmw.2_Silent_p.S86S|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA|MYO19_uc010wda.1_Intron|MYO19_uc002hmx.2_Silent_p.S86S	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	86	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TTAGCTCGGGCGAGTAGAGCT	0.602000													3	13					0	0	1	0	0	
SYNRG	11276	broad.mit.edu	37	17	35914112	35914112	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:35914112G>A	uc002hoa.2	-	14	1796	c.1713C>T	c.(1711-1713)ACC>ACT	p.T571T	SYNRG_uc010wde.1_Silent_p.T493T|SYNRG_uc010wdf.1_Silent_p.T493T|SYNRG_uc002hoc.2_Silent_p.T492T|SYNRG_uc002hoe.2_Silent_p.T493T|SYNRG_uc002hod.2_Silent_p.T493T|SYNRG_uc010wdg.1_Silent_p.T410T|SYNRG_uc002hob.2_Silent_p.T571T|SYNRG_uc002hof.2_Silent_p.T283T|SYNRG_uc010cvd.1_Silent_p.T371T	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	571	Interaction with A1P1G1 and A1P1G2.				endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						TTTTAAAATCGGTGAAACCAT	0.403000													37	96					0	0	1	0	0	
FBXO47	494188	broad.mit.edu	37	17	37099920	37099920	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:37099920G>T	uc002hrc.2	-	8	1063	c.863C>A	c.(862-864)GCC>GAC	p.A288D		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	288											0						TAACTTAATGGCATCAGCCAA	0.373000													24	52					2.21704e-12	2.3487e-12	1	1	0	
PLXDC1	57125	broad.mit.edu	37	17	37264408	37264408	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:37264408G>A	uc002hrg.2	-	5	772	c.560C>T	c.(559-561)TCC>TTC	p.S187F	uc002hrf.1_3'UTR|PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	187	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						GGAGTTGTCGGAGTAGCCAGG	0.527000													33	79					0	0	1	0	0	
NEUROD2	4761	broad.mit.edu	37	17	37761954	37761954	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:37761954C>T	uc002hry.2	-	2	1099	c.899G>A	c.(898-900)AGC>AAC	p.S300N		NM_006160	NP_006151	Q15784	NDF2_HUMAN	neurogenic differentiation 2	300					cellular response to calcium ion|cellular response to electrical stimulus|cerebellar cortex development|negative regulation of synapse maturation|positive regulation of calcium-mediated signaling|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of synapse maturation|positive regulation of synaptic plasticity|protein ubiquitination|regulation of transcription from RNA polymerase II promoter	nucleus	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Lung(15;0.00549)|LUAD - Lung adenocarcinoma(14;0.0664)			GAGCGGGGGGCTGAGCGGGCC	0.652000													4	7					0	0	1	0	0	
THRA	7067	broad.mit.edu	37	17	38243031	38243031	+	Silent	SNP	C	T	T	rs147570693		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:38243031C>T	uc002htw.2	+	7	1131	c.648C>T	c.(646-648)AGC>AGT	p.S216S	THRA_uc010cwp.1_Silent_p.S216S|THRA_uc002htv.2_Silent_p.S216S|THRA_uc002htx.2_Silent_p.S216S	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	216	Ligand-binding.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	AAGCCTTCAGCGAGTTTACCA	0.572000											OREG0024390	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	35					0	0	1	0	0	
KRT33B	3884	broad.mit.edu	37	17	39521092	39521092	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:39521092G>A	uc002hwl.2	-	6	1081	c.1036C>T	c.(1036-1038)CGG>TGG	p.R346W		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	346	Coil 2.|Rod.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				AGCCGCGCCCGCACGTCCAGC	0.642000													37	72					0	0	1	0	0	
KRT13	3860	broad.mit.edu	37	17	39661430	39661430	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:39661430G>T	uc002hwu.1	-	1	436	c.373C>A	c.(373-375)CTG>ATG	p.L125M	KRT13_uc002hwv.1_Missense_Mutation_p.L125M|KRT13_uc002hww.2_Missense_Mutation_p.L18M|KRT13_uc010wfr.1_Missense_Mutation_p.L18M|KRT13_uc010cxo.2_Missense_Mutation_p.L125M|KRT13_uc002hwx.1_Missense_Mutation_p.L113M	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	125	Coil 1A.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				GCCTCCTCCAGGGCGCGCACC	0.542000													25	65					7.38237e-10	7.75105e-10	1	1	0	
KRT15	3866	broad.mit.edu	37	17	39671934	39671934	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:39671934A>G	uc002hwy.2	-	6	1228	c.1037T>C	c.(1036-1038)CTG>CCG	p.L346P	KRT15_uc002hwz.2_Missense_Mutation_p.L248P|KRT15_uc002hxa.2_Missense_Mutation_p.L181P|KRT15_uc002hxb.1_Missense_Mutation_p.L181P	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	346	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				TGAGTTCTCCAGCCCAGCTTT	0.602000													14	30					0	0	1	0	0	
AARSD1	80755	broad.mit.edu	37	17	41113254	41113254	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:41113254G>A	uc002icc.2	-	3	289	c.286C>T	c.(286-288)CGG>TGG	p.R96W	AARSD1_uc002icd.2_Missense_Mutation_p.R209W|AARSD1_uc002ice.2_Missense_Mutation_p.R179W|AARSD1_uc002icf.2_Missense_Mutation_p.R270W|AARSD1_uc010whg.1_Missense_Mutation_p.R270W|AARSD1_uc010cyu.1_Missense_Mutation_p.R96W	NM_025267	NP_079543	Q9BTE6	AASD1_HUMAN	alanyl-tRNA synthetase domain containing 1	96					alanyl-tRNA aminoacylation	cytoplasm	alanine-tRNA ligase activity|ATP binding|metal ion binding|nucleic acid binding				0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		CAATCTACCCGGACCAGAACC	0.502000													17	204					0	0	1	0	0	
DHX8	1659	broad.mit.edu	37	17	41570249	41570249	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:41570249G>A	uc002idu.1	+	6	777	c.704G>A	c.(703-705)CGG>CAG	p.R235Q	DHX8_uc010wif.1_Missense_Mutation_p.R144Q|DHX8_uc010wig.1_Missense_Mutation_p.R235Q	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	235						catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		CCCAAAGACCGGAAGGACCGG	0.547000													28	67					0	0	1	0	0	
DUSP3	1845	broad.mit.edu	37	17	41847137	41847137	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:41847137G>A	uc002ied.3	-	3	474	c.398C>T	c.(397-399)ACG>ATG	p.T133M	DUSP3_uc002iee.3_3'UTR|DUSP3_uc002ief.1_Missense_Mutation_p.T90M	NM_004090	NP_004081	P51452	DUS3_HUMAN	dual specificity phosphatase 3	133	Tyrosine-protein phosphatase.				inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of JNK cascade|negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of mitotic cell cycle|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|immunological synapse|nucleoplasm	MAP kinase phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		Breast(137;0.00725)		BRCA - Breast invasive adenocarcinoma(366;0.116)		GATAACTAGCGTTGGGGAGCG	0.607000													4	51					0	0	1	0	0	
C17orf53	78995	broad.mit.edu	37	17	42232251	42232251	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:42232251T>C	uc002ifi.1	+	7	1777	c.1592T>C	c.(1591-1593)CTG>CCG	p.L531P	C17orf53_uc010czq.1_Missense_Mutation_p.L530P|C17orf53_uc002ifj.1_Missense_Mutation_p.L455P|C17orf53_uc002ifk.1_Intron	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	531											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		CACAGGTTGCTGCTGGAGACG	0.622000													5	27					0	0	1	0	0	
SLC4A1	6521	broad.mit.edu	37	17	42334898	42334898	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:42334898G>A	uc002igf.3	-	13	1595	c.1446C>T	c.(1444-1446)AAC>AAT	p.N482N	SLC4A1_uc002igg.3_Silent_p.N482N	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	482	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		ACTCTAGACCGTTGGTCTCGC	0.607000													11	41					0	0	1	0	0	
SLC4A1	6521	broad.mit.edu	37	17	42338958	42338958	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:42338958G>T	uc002igf.3	-	4	302	c.153C>A	c.(151-153)CAC>CAA	p.H51Q	SLC4A1_uc002igg.3_Missense_Mutation_p.H51Q	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	51	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GGGTACCCGGGTGTGATGTGG	0.577000													19	59					1.33834e-09	1.40184e-09	1	1	0	
GRN	2896	broad.mit.edu	37	17	42428075	42428075	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:42428075G>A	uc002igp.1	+	7	834	c.615G>A	c.(613-615)TCG>TCA	p.S205S	GRN_uc002igq.1_3'UTR|GRN_uc002igr.1_5'UTR	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	205					signal transduction	extracellular space	cytokine activity|growth factor activity			ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		TGTCCAGCTCGGTCATGTGTC	0.607000											OREG0024459	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	32					0	0	1	0	0	
ITGA2B	3674	broad.mit.edu	37	17	42466710	42466710	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:42466710G>A	uc002igt.1	-	1	164	c.132C>T	c.(130-132)GGC>GGT	p.G44G		NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	44	Extracellular (Potential).|FG-GAP 1.				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	TGCCATTGGGGCCTGCATAGA	0.592000													33	70					0	0	1	0	0	
MAP3K14	9020	broad.mit.edu	37	17	43342571	43342571	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:43342571G>A	uc002iiw.1	-	16	2747	c.2638C>T	c.(2638-2640)CGG>TGG	p.R880W	LOC100133991_uc010dah.2_Intron|LOC100133991_uc002iit.3_Intron|LOC100133991_uc010dai.2_Intron|MAP3K14_uc002iiu.1_Missense_Mutation_p.R410W|MAP3K14_uc010daj.1_RNA|MAP3K14_uc002iiv.1_Missense_Mutation_p.R464W	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	880				R -> G (in Ref. 2; BAF82892).	cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						ACTTTGACCCGGTGGAACTCC	0.577000													28	38					0	0	1	0	0	
MRPL10	124995	broad.mit.edu	37	17	45904542	45904542	+	Missense_Mutation	SNP	C	T	T	rs149631185		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:45904542C>T	uc002ilz.2	-	3	277	c.251G>A	c.(250-252)CGG>CAG	p.R84Q	MRPL10_uc010wky.1_Missense_Mutation_p.R45Q|MRPL10_uc002ily.2_Missense_Mutation_p.R94Q	NM_145255	NP_660298	Q7Z7H8	RM10_HUMAN	mitochondrial ribosomal protein L10 precursor	84					ribosome biogenesis|translation	mitochondrial large ribosomal subunit	structural constituent of ribosome			ovary(1)	1						TGCTATCTCCCGGCGGAGAAG	0.547000													28	52					0	0	1	0	0	
LRRC46	90506	broad.mit.edu	37	17	45911828	45911828	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:45911828G>A	uc002ima.2	+	3	410	c.154G>A	c.(154-156)GAC>AAC	p.D52N	MRPL10_uc010wky.1_5'Flank|MRPL10_uc002ilz.2_5'Flank|MRPL10_uc002ily.2_5'Flank|LRRC46_uc002imb.2_5'UTR	NM_033413	NP_219481	Q96FV0	LRC46_HUMAN	leucine rich repeat containing 46	52	LRR 1.									ovary(1)	1						TGTCCGCCTGGACCGGGAGGG	0.517000													37	59					0	0	1	0	0	
HOXB3	3213	broad.mit.edu	37	17	46628527	46628527	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:46628527G>A	uc002inn.2	-	2	865	c.465C>T	c.(463-465)GGC>GGT	p.G155G	HOXB3_uc010wlm.1_Silent_p.G82G|HOXB3_uc010dbf.2_Silent_p.G155G|HOXB3_uc010dbg.2_Silent_p.G155G|HOXB3_uc002ino.2_Silent_p.G155G|HOXB3_uc010wlk.1_Silent_p.G23G|HOXB3_uc010wll.1_Silent_p.G82G	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	155	Gly-rich.				angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						caccgccgccgccaccACAGC	0.373000													9	15					0	0	1	0	0	
B4GALNT2	124872	broad.mit.edu	37	17	47210513	47210513	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:47210513C>A	uc002ion.2	+	1	185	c.126C>A	c.(124-126)TGC>TGA	p.C42*	B4GALNT2_uc010wlt.1_Intron|B4GALNT2_uc010wlu.1_Intron	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	42	Cytoplasmic (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			GGGCTCTCTGCTTGGAACTCA	0.692000													4	5					0.00909568	0.00915269	1	1	0	
GNGT2	2793	broad.mit.edu	37	17	47284199	47284199	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:47284199C>A	uc002ioo.1	-	4	437	c.130G>T	c.(130-132)GCA>TCA	p.A44S		NM_031498	NP_113686	O14610	GBGT2_HUMAN	guanine nucleotide binding protein-gamma	44					G-protein coupled receptor protein signaling pathway|phototransduction|synaptic transmission	extracellular region|heterotrimeric G-protein complex	GTPase activity|signal transducer activity				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			TCGTTTCCTGCTTGGGCCTCC	0.488000													32	66					3.86903e-22	4.19184e-22	1	1	0	
MRPL27	51264	broad.mit.edu	37	17	48445469	48445469	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:48445469A>C	uc002iqq.2	-	4	462	c.431T>G	c.(430-432)CTG>CGG	p.L144R	MRPL27_uc002iqr.2_3'UTR	NM_016504	NP_057588	Q9P0M9	RM27_HUMAN	mitochondrial ribosomal protein L27	144					translation	mitochondrial large ribosomal subunit	structural constituent of ribosome				0	Breast(11;5.62e-19)		BRCA - Breast invasive adenocarcinoma(22;1.73e-07)			CATAGCTACCAGTTTGAAGGT	0.562000													17	40					0	0	1	0	0	
WFIKKN2	124857	broad.mit.edu	37	17	48917430	48917430	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:48917430C>T	uc002isv.3	+	2	1475	c.781C>T	c.(781-783)CGT>TGT	p.R261C	WFIKKN2_uc010dbu.2_Missense_Mutation_p.R168C	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	261	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			CAACCATGTGCGTGGCAACGT	0.617000													27	20					0	0	1	0	0	
SPAG9	9043	broad.mit.edu	37	17	49075879	49075879	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:49075879G>A	uc002itc.2	-	15	1973	c.1764C>T	c.(1762-1764)TCC>TCT	p.S588S	SPAG9_uc002itb.2_Silent_p.S574S|SPAG9_uc002itd.2_Silent_p.S578S|SPAG9_uc002itf.2_Silent_p.S409S|SPAG9_uc002ita.2_Silent_p.S431S|SPAG9_uc002ite.2_Silent_p.S418S	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	588					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			TTTTCTTGACGGACGGAGTAA	0.433000													22	62					0	0	1	0	0	
CA10	56934	broad.mit.edu	37	17	49710999	49710999	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:49710999G>A	uc002itw.3	-	8	1788	c.802C>T	c.(802-804)CGC>TGC	p.R268C	CA10_uc002itu.3_Missense_Mutation_p.R197C|CA10_uc002itv.3_Missense_Mutation_p.R274C|CA10_uc002itx.3_Missense_Mutation_p.R268C|CA10_uc002ity.3_Missense_Mutation_p.R268C|CA10_uc002itz.2_Missense_Mutation_p.R268C	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	268					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			CTGAGCAGGCGCAAGGAATGC	0.512000													11	29					0	0	1	0	0	
KIF2B	84643	broad.mit.edu	37	17	51900843	51900843	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:51900843T>C	uc002iua.2	+	1	605	c.449T>C	c.(448-450)CTC>CCC	p.L150P	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	150					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TCTCCCTGCCTCTGGGAAATC	0.572000													25	61					0	0	1	0	0	
KIF2B	84643	broad.mit.edu	37	17	51902309	51902309	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:51902309G>A	uc002iua.2	+	1	2071	c.1915G>A	c.(1915-1917)GCC>ACC	p.A639T	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	639					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TTTTTGCATTGCCCGGTCTTT	0.448000													25	44					0	0	1	0	0	
SCPEP1	59342	broad.mit.edu	37	17	55065125	55065125	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:55065125G>C	uc002iuv.3	+	4	438	c.385G>C	c.(385-387)GGT>CGT	p.G129R	SCPEP1_uc010dcl.2_RNA|SCPEP1_uc010wnk.1_Missense_Mutation_p.G79R	NM_021626	NP_067639	Q9HB40	RISC_HUMAN	serine carboxypeptidase 1 precursor	129					proteolysis	extracellular region	serine-type carboxypeptidase activity			skin(1)	1	Breast(9;2.86e-08)					GAATGGTAGTGGTGCCTATGC	0.493000													7	131					0	0	1	0	0	
EPX	8288	broad.mit.edu	37	17	56274532	56274532	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:56274532G>A	uc002ivq.2	+	7	1120	c.1034G>A	c.(1033-1035)GGC>GAC	p.G345D		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	345					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CAAGACAACGGCCGGGCCCTG	0.647000													20	63					0	0	1	0	0	
MTMR4	9110	broad.mit.edu	37	17	56573626	56573626	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:56573626C>T	uc002iwj.2	-	16	1987	c.1877G>A	c.(1876-1878)CGT>CAT	p.R626H		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	626						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ACTGGATGTACGAGTCAGGGG	0.507000													20	39					0	0	1	0	0	
TRIM37	4591	broad.mit.edu	37	17	57181748	57181748	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:57181748G>A	uc002iwy.3	-	2	473	c.29C>T	c.(28-30)GCT>GTT	p.A10V	TRIM37_uc002iwz.3_Missense_Mutation_p.A10V|TRIM37_uc002ixa.3_5'UTR|TRIM37_uc010woc.1_Intron|uc002ixb.2_5'Flank	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	10						perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					GAAAACCTCAGCAATGCTCTG	0.398000									Mulibrey_Nanism				26	56					0	0	1	0	0	
CLTC	1213	broad.mit.edu	37	17	57761246	57761246	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:57761246T>G	uc002ixq.1	+	28	4777	c.4334T>G	c.(4333-4335)CTA>CGA	p.L1445R	CLTC_uc002ixp.2_Missense_Mutation_p.L1445R|CLTC_uc002ixr.1_Missense_Mutation_p.L1449R	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1445	Heavy chain arm.|Proximal segment.|Involved in binding clathrin light chain (By similarity).				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GTTAAACAGCTACCACTGGTG	0.333000			T	ALK|TFE3	ALCL|renal 								22	32					0	0	1	0	0	
HEATR6	63897	broad.mit.edu	37	17	58153591	58153591	+	Missense_Mutation	SNP	C	T	T	rs142343207		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:58153591C>T	uc002iyk.1	-	2	244	c.227G>A	c.(226-228)AGT>AAT	p.S76N	HEATR6_uc010wos.1_5'Flank	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	76							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			AAGAAGAGCACTAACGTCCTA	0.368000													12	15					0	0	1	0	0	
BCAS3	54828	broad.mit.edu	37	17	59118211	59118211	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:59118211G>A	uc002iyv.3	+	20	2141	c.2032G>A	c.(2032-2034)GCT>ACT	p.A678T	BCAS3_uc002iyu.3_Missense_Mutation_p.A663T|BCAS3_uc002iyw.3_Missense_Mutation_p.A659T|BCAS3_uc002iyy.3_Missense_Mutation_p.A434T|BCAS3_uc002iyz.3_Missense_Mutation_p.A232T|BCAS3_uc002iza.3_Missense_Mutation_p.A217T	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	678						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			TCTGCTCCTCGCTGCAGATGC	0.388000													42	98					0	0	1	0	0	
INTS2	57508	broad.mit.edu	37	17	59972690	59972690	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:59972690T>A	uc002izn.2	-	12	1649	c.1573A>T	c.(1573-1575)ATT>TTT	p.I525F	INTS2_uc002izm.2_Missense_Mutation_p.I517F	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	525					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						TCAGTAAAAATTTCCTGTGTG	0.299000													7	19					0	0	1	0	0	
SCN4A	6329	broad.mit.edu	37	17	62019244	62019244	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:62019244C>A	uc002jds.1	-	24	4475	c.4398G>T	c.(4396-4398)AAG>AAT	p.K1466N		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1466	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).|IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TCCGGATGCCCTTGGCCCCGC	0.607000													10	31					7.48243e-07	7.72747e-07	1	1	0	
CCDC45	90799	broad.mit.edu	37	17	62518978	62518978	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:62518978G>A	uc002jem.2	+	8	932	c.874G>A	c.(874-876)GTA>ATA	p.V292I	CCDC45_uc002jen.2_RNA|CCDC45_uc010wqb.1_Missense_Mutation_p.V128I	NM_138363	NP_612372	Q96GE4	CEP95_HUMAN	coiled-coil domain containing 45	292						centrosome|spindle pole	protein binding				0	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			CTCCCCAGCCGTAAATTCTAC	0.463000													8	13					0	0	1	0	0	
CCDC45	90799	broad.mit.edu	37	17	62528989	62528989	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:62528989A>G	uc002jem.2	+	15	1763	c.1705A>G	c.(1705-1707)ATG>GTG	p.M569V	CCDC45_uc002jen.2_RNA|CCDC45_uc010wqb.1_Missense_Mutation_p.M405V|CCDC45_uc002jeo.1_Missense_Mutation_p.M1V	NM_138363	NP_612372	Q96GE4	CEP95_HUMAN	coiled-coil domain containing 45	569						centrosome|spindle pole	protein binding				0	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			CCTGCCCCTTATGCTGGAGCA	0.423000													8	21					0	0	1	0	0	
SMURF2	64750	broad.mit.edu	37	17	62589575	62589575	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:62589575C>T	uc002jep.1	-	4	705	c.317G>A	c.(316-318)CGC>CAC	p.R106H	SMURF2_uc002jeq.1_5'UTR|SMURF2_uc002jer.1_5'UTR	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	106					BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			GTCTTTGAGGCGGTTGATGGC	0.313000													22	45					0	0	1	0	0	
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373000													7	142					0	0	1	0	0	
RGS9	8787	broad.mit.edu	37	17	63223455	63223455	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:63223455A>G	uc002jfe.2	+	19	2065	c.1955A>G	c.(1954-1956)GAT>GGT	p.D652G	RGS9_uc002jfd.2_Missense_Mutation_p.D649G|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Missense_Mutation_p.D423G	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	652					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						GACTCGGAGGATGCTGGAACA	0.582000													16	28					0	0	1	0	0	
BPTF	2186	broad.mit.edu	37	17	65919019	65919019	+	Missense_Mutation	SNP	C	T	T	rs148728817	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:65919019C>T	uc002jgf.2	+	14	5682	c.5621C>T	c.(5620-5622)ACG>ATG	p.T1874M	BPTF_uc002jge.2_Missense_Mutation_p.T2000M	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	2000					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			AGACCAGAAACGCCCAAGCAA	0.453000													26	60					0	0	1	0	0	
ABCA8	10351	broad.mit.edu	37	17	66925324	66925324	+	Missense_Mutation	SNP	C	T	T	rs4147979	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:66925324C>T	uc002jhp.2	-	8	1170	c.991G>A	c.(991-993)GGC>AGC	p.G331S	ABCA8_uc002jhq.2_Missense_Mutation_p.G331S|ABCA8_uc010wqq.1_Missense_Mutation_p.G331S|ABCA8_uc010wqr.1_Missense_Mutation_p.G270S|ABCA8_uc002jhr.2_Missense_Mutation_p.G331S	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	331	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					ACGACCAGGCCGGTGAGGAAA	0.433000													11	38					0	0	1	0	0	
C17orf77	146723	broad.mit.edu	37	17	72588248	72588248	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:72588248G>A	uc002jla.1	+	3	425	c.63G>A	c.(61-63)CTG>CTA	p.L21L	CD300LD_uc002jkz.2_Intron	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	21						extracellular region					0						GAGCGTCTCTGTCTCCAAGCC	0.502000													23	56					0	0	1	0	0	
C17orf28	283987	broad.mit.edu	37	17	72948429	72948429	+	Silent	SNP	C	T	T	rs146778361	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:72948429C>T	uc002jmj.3	-	17	2228	c.2079G>A	c.(2077-2079)CCG>CCA	p.P693P	C17orf28_uc002jmi.2_Silent_p.P95P|C17orf28_uc010wrs.1_Silent_p.P492P	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	693						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					TGGTCTGCAGCGGCAGCTTCG	0.547000													6	19					0	0	1	0	0	
GGA3	23163	broad.mit.edu	37	17	73237030	73237030	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:73237030C>T	uc002jni.1	-	11	1064	c.1055G>A	c.(1054-1056)GGC>GAC	p.G352D	GGA3_uc002jnj.1_Missense_Mutation_p.G319D|GGA3_uc010wrw.1_Missense_Mutation_p.G230D|GGA3_uc002jnk.1_Missense_Mutation_p.G280D|GGA3_uc010wrx.1_Missense_Mutation_p.G230D|GGA3_uc010wry.1_Missense_Mutation_p.G280D	NM_138619	NP_619525	Q9NZ52	GGA3_HUMAN	ADP-ribosylation factor binding protein 3	352	Unstructured hinge.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|breast(1)	2			all cancers(21;2.39e-06)|Epithelial(20;2.38e-05)			GATTGGGATGCCTGAGGAGGG	0.647000											OREG0024730	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	44					0	0	1	0	0	
SRP68	6730	broad.mit.edu	37	17	74068513	74068513	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:74068513A>G	uc002jqk.1	-	1	95	c.60T>C	c.(58-60)GGT>GGC	p.G20G	SRP68_uc010wsu.1_5'UTR|SRP68_uc002jql.1_Silent_p.G20G|GALR2_uc002jqm.1_5'Flank	NM_014230	NP_055045	Q9UHB9	SRP68_HUMAN	signal recognition particle 68kDa	20	Poly-Gly.				response to drug	cytosol|endoplasmic reticulum|nucleolus|ribosome|signal recognition particle, endoplasmic reticulum targeting	RNA binding|signal recognition particle binding			ovary(1)	1						cgccactgccaccgccgccgc	0.393000													5	17					0	0	1	0	0	
USP36	57602	broad.mit.edu	37	17	76803391	76803391	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:76803391G>T	uc002jvz.1	-	14	2060	c.1735C>A	c.(1735-1737)CTC>ATC	p.L579I	USP36_uc002jwa.1_Missense_Mutation_p.L579I|USP36_uc002jwb.1_Missense_Mutation_p.L216I|USP36_uc002jwc.1_Missense_Mutation_p.L279I	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	579					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			GAGGTAGAGAGGACAACATCC	0.627000													5	12					0.014758	0.0148083	1	1	0	
CBX2	84733	broad.mit.edu	37	17	77758039	77758039	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:77758039G>A	uc002jxc.2	+	5	839	c.797G>A	c.(796-798)AGC>AAC	p.S266N		NM_005189	NP_005180	Q14781	CBX2_HUMAN	chromobox homolog 2 isoform 1	266					cell differentiation|chromatin modification|development of primary sexual characteristics|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	PcG protein complex	DNA binding				0			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			ATGACCCAGAGCCAGGCCCAG	0.652000													18	29					0	0	1	0	0	
RNF213	57674	broad.mit.edu	37	17	78327386	78327386	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:78327386G>A	uc002jyh.1	+	9	4940	c.4717G>A	c.(4717-4719)GCA>ACA	p.A1573T	uc002jyi.1_RNA|RNF213_uc010dhw.1_5'Flank	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			AGGGGAGGTGGCAGAGGTGGC	0.572000													11	16					0	0	1	0	0	
AZI1	22994	broad.mit.edu	37	17	79164804	79164804	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:79164804G>A	uc002jzp.1	-	23	3055	c.2855C>T	c.(2854-2856)TCG>TTG	p.S952L	AZI1_uc002jzm.1_Missense_Mutation_p.S384L|AZI1_uc002jzn.1_Missense_Mutation_p.S949L|AZI1_uc002jzo.1_Missense_Mutation_p.S913L|AZI1_uc010wum.1_Missense_Mutation_p.S916L|AZI1_uc002jzq.2_Missense_Mutation_p.S100L	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	952					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CTTCAGCTCCGAGCACCGCTC	0.677000													19	31					0	0	1	0	0	
BAHCC1	57597	broad.mit.edu	37	17	79409626	79409626	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:79409626A>G	uc002kaf.2	+	3	1251	c.1251A>G	c.(1249-1251)GCA>GCG	p.A417A	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	417							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			GTGCCGTGGCAGGGGAGGGCA	0.706000													4	8					0	0	1	0	0	
C17orf70	80233	broad.mit.edu	37	17	79512780	79512780	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:79512780C>T	uc002kaq.2	-	6	2357	c.2302G>A	c.(2302-2304)GTC>ATC	p.V768I	C17orf70_uc002kao.1_Missense_Mutation_p.V417I|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Missense_Mutation_p.V617I	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	768					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			GCCTCTCGGACGATGAGGTGA	0.657000													7	12					0	0	1	0	0	
C17orf70	80233	broad.mit.edu	37	17	79517945	79517945	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:79517945T>C	uc002kaq.2	-	3	630	c.575A>G	c.(574-576)CAC>CGC	p.H192R	C17orf70_uc002kao.1_5'Flank|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Missense_Mutation_p.H41R	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	192					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			TGGAAGGAAGTGGGGGGCTGC	0.692000													5	15					0	0	1	0	0	
LRRC45	201255	broad.mit.edu	37	17	79987011	79987011	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:79987011A>G	uc002kde.2	+	13	1591	c.1351A>G	c.(1351-1353)ATG>GTG	p.M451V	RAC3_uc002kdf.2_5'Flank	NM_144999	NP_659436	Q96CN5	LRC45_HUMAN	leucine rich repeat containing 45	451	Potential.					centrosome				pancreas(1)	1	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			TGAGAAGGCCATGCAGGAGCG	0.662000													6	9					0	0	1	0	0	
FASN	2194	broad.mit.edu	37	17	80039054	80039054	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:80039054G>A	uc002kdu.2	-	38	6698	c.6581C>T	c.(6580-6582)GCG>GTG	p.A2194V	FASN_uc002kdv.1_RNA	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	2194					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GGCCTCATCCGCCTTTGAGGA	0.687000													4	6					0	0	1	0	0	
NARF	26502	broad.mit.edu	37	17	80442718	80442718	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:80442718C>T	uc002kfg.3	+	9	1003	c.863C>T	c.(862-864)ACG>ATG	p.T288M	NARF_uc002kff.3_Missense_Mutation_p.T229M|NARF_uc010wvp.1_3'UTR|NARF_uc010dit.2_Missense_Mutation_p.T334M|NARF_uc002kfj.3_Missense_Mutation_p.T240M|NARF_uc002kfi.3_RNA|NARF_uc002kfh.3_Missense_Mutation_p.T334M|NARF_uc002kfk.2_RNA	NM_012336	NP_036468	Q9UHQ1	NARF_HUMAN	nuclear prelamin A recognition factor isoform a	288						lamin filament	lamin binding			skin(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			GACAAAGTGACGCGTCATGAT	0.512000													23	45					0	0	1	0	0	
TBCD	6904	broad.mit.edu	37	17	80763856	80763856	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:80763856C>T	uc002kfz.2	+	10	1186	c.1056C>T	c.(1054-1056)GAC>GAT	p.D352D	TBCD_uc002kfx.1_Silent_p.D335D|TBCD_uc002kfy.1_Silent_p.D352D	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	352					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			acgaagatgacgacgTCCCAG	0.537000													17	21					0	0	1	0	0	
THOC1	9984	broad.mit.edu	37	18	224147	224147	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:224147C>T	uc002kkj.3	-	16	1281	c.1241G>A	c.(1240-1242)CGG>CAG	p.R414Q	THOC1_uc002kkk.3_RNA|THOC1_uc002kkh.3_Missense_Mutation_p.R38Q	NM_005131	NP_005122	Q96FV9	THOC1_HUMAN	THO complex 1	414	Nuclear localization signal.				apoptosis|intronless viral mRNA export from host nucleus|mRNA processing|regulation of transcription elongation, DNA-dependent|RNA splicing|signal transduction|transcription, DNA-dependent	cytoplasm|nuclear matrix|nuclear speck|THO complex part of transcription export complex	DNA binding|protein binding|RNA binding			ovary(1)	1		all_cancers(4;0.0896)|Myeloproliferative disorder(11;0.0412)				TGTTCTCTTCCGAATTATTCT	0.368000													3	6					0	0	1	0	0	
COLEC12	81035	broad.mit.edu	37	18	335079	335079	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:335079G>A	uc002kkm.2	-	6	1694	c.1479C>T	c.(1477-1479)CCC>CCT	p.P493P		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	493	Collagen-like 2.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				CACGCTCTCCGGGGGGACCAG	0.672000													20	32					0	0	1	0	0	
DLGAP1	9229	broad.mit.edu	37	18	3879345	3879345	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:3879345T>C	uc002kmf.2	-	1	791	c.724A>G	c.(724-726)ACC>GCC	p.T242A	DLGAP1_uc010wyz.1_Missense_Mutation_p.T242A|DLGAP1_uc002kmk.2_Missense_Mutation_p.T242A|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	242					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				TCGCTGATGGTGTTGTAGGCC	0.647000													18	65					0	0	1	0	0	
LRRC30	339291	broad.mit.edu	37	18	7231375	7231375	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:7231375A>G	uc010wzk.1	+	1	239	c.239A>G	c.(238-240)CAC>CGC	p.H80R		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	80	LRR 1.									ovary(1)|liver(1)	2						AATCTGTCTCACAACCAGCTC	0.592000													19	41					0	0	1	0	0	
KIAA0802	23255	broad.mit.edu	37	18	8796287	8796287	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:8796287G>A	uc002knr.2	+	9	2210	c.2068G>A	c.(2068-2070)GCT>ACT	p.A690T	KIAA0802_uc002knq.2_Missense_Mutation_p.A649T|KIAA0802_uc002kns.2_Missense_Mutation_p.A20T	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1000											0						GCACAGCCTGGCTTTGCAAAA	0.488000													28	53					0	0	1	0	0	
KIAA0802	23255	broad.mit.edu	37	18	8798182	8798182	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:8798182C>T	uc002knr.2	+	10	2471	c.2329C>T	c.(2329-2331)CGA>TGA	p.R777*	KIAA0802_uc002knq.2_Nonsense_Mutation_p.R736*|KIAA0802_uc002kns.2_Nonsense_Mutation_p.R107*	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1087											0						CGACAGTGACCGAGGCTGTGG	0.652000													12	38					0	0	1	0	0	
KIAA0802	23255	broad.mit.edu	37	18	8825987	8825987	+	Silent	SNP	G	A	A	rs145849851		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:8825987G>A	uc002knr.2	+	15	4621	c.4479G>A	c.(4477-4479)TCG>TCA	p.S1493S	KIAA0802_uc002knq.2_Silent_p.S1452S|KIAA0802_uc002kns.2_Silent_p.S833S	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1803											0						GAGGAAGGTCGCCTAGCCCCA	0.657000													11	14					0	0	1	0	0	
NAPG	8774	broad.mit.edu	37	18	10539823	10539823	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:10539823A>G	uc002kon.2	+	6	550	c.323A>G	c.(322-324)AAC>AGC	p.N108S	NAPG_uc010wzr.1_Missense_Mutation_p.N26S|NAPG_uc002koo.2_Missense_Mutation_p.N21S|NAPG_uc002kop.2_Missense_Mutation_p.N21S	NM_003826	NP_003817	Q99747	SNAG_HUMAN	N-ethylmaleimide-sensitive factor attachment	108					cellular membrane fusion|intra-Golgi vesicle-mediated transport|intracellular protein transport|protein complex assembly|protein stabilization	membrane|membrane fraction|mitochondrion	protein binding				0						TATCTAGAAAACGGCACCCCA	0.468000													18	44					0	0	1	0	0	
GNAL	2774	broad.mit.edu	37	18	11868561	11868561	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:11868561C>T	uc010dkz.2	+	10	945	c.699C>T	c.(697-699)TAC>TAT	p.Y233Y	GNAL_uc002kqc.2_Silent_p.Y310Y|GNAL_uc002kqd.2_Silent_p.Y233Y|GNAL_uc010wzt.1_Silent_p.Y26Y	NM_001142339	NP_001135811	P38405	GNAL_HUMAN	guanine nucleotide binding protein (G protein),	233					activation of adenylate cyclase activity by dopamine receptor signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception of smell|synaptic transmission	heterotrimeric G-protein complex	adenylate cyclase activity|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						CTATCATTTACGTCGCAGCCT	0.463000													50	69					0	0	1	0	0	
FAM59A	64762	broad.mit.edu	37	18	29867407	29867407	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:29867407G>A	uc002kxl.2	-	4	1209	c.1153C>T	c.(1153-1155)CGA>TGA	p.R385*	FAM59A_uc002kxk.1_Nonsense_Mutation_p.R385*	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	385										ovary(1)|skin(1)	2						ACCGAGAGTCGGTGGAAGGAC	0.577000													28	50					0	0	1	0	0	
C18orf34	374864	broad.mit.edu	37	18	30803107	30803107	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:30803107T>C	uc002kxn.2	-	17	2037	c.1895A>G	c.(1894-1896)AAG>AGG	p.K632R	C18orf34_uc010dme.1_Missense_Mutation_p.K146R|C18orf34_uc010xbr.1_Missense_Mutation_p.K632R|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Intron|C18orf34_uc002kxp.2_Missense_Mutation_p.K632R	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	632										ovary(1)	1						TTTCTTCCCCTTTTTTCGTAA	0.274000													12	30					0	0	1	0	0	
ASXL3	80816	broad.mit.edu	37	18	31263451	31263451	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:31263451A>G	uc010dmg.1	+	8	853	c.798A>G	c.(796-798)TTA>TTG	p.L266L	ASXL3_uc002kxq.2_5'UTR	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	266					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TGAGGGCATTAATAAATAAAC	0.413000													7	18					0	0	1	0	0	
NOL4	8715	broad.mit.edu	37	18	31673513	31673513	+	Missense_Mutation	SNP	G	C	C	rs141918449		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:31673513G>C	uc010dmi.2	-	5	917	c.688C>G	c.(688-690)CGG>GGG	p.R230G	NOL4_uc002kxr.3_Missense_Mutation_p.R66G|NOL4_uc010xbt.1_Missense_Mutation_p.R156G|NOL4_uc010dmh.2_Missense_Mutation_p.R156G|NOL4_uc010xbu.1_Missense_Mutation_p.R230G|NOL4_uc002kxt.3_Missense_Mutation_p.R230G|NOL4_uc010xbw.1_Missense_Mutation_p.R116G	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	230						nucleolus	RNA binding			ovary(3)	3						GCTGACATCCGTGTTGAATCA	0.353000													21	50					0	0	1	0	0	
ZNF24	7572	broad.mit.edu	37	18	32917733	32917733	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:32917733A>G	uc002kyt.2	-	4	727	c.570T>C	c.(568-570)GAT>GAC	p.D190D	ZNF24_uc002kys.2_Silent_p.D190D	NM_006965	NP_008896	P17028	ZNF24_HUMAN	zinc finger protein 24	190					myelination|negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TACCATCATCATCTGAAATAA	0.343000													17	77					0	0	1	0	0	
SETBP1	26040	broad.mit.edu	37	18	42531516	42531516	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:42531516C>A	uc010dni.2	+	4	2507	c.2211C>A	c.(2209-2211)CCC>CCA	p.P737P		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	737						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		AGCTGCCACCCCCATCCGAAG	0.547000									Schinzel-Giedion_syndrome				13	16					1.3612e-06	1.40332e-06	1	1	0	
RNF165	494470	broad.mit.edu	37	18	44013421	44013421	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:44013421G>C	uc002lcb.1	+	2	381	c.330G>C	c.(328-330)CAG>CAC	p.Q110H	RNF165_uc002lby.1_Missense_Mutation_p.Q43H|RNF165_uc010dnn.1_Intron	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	110							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		ACCTCCTGCAGCAGCAGCTCC	0.532000													10	25					0	0	1	0	0	
ST8SIA5	29906	broad.mit.edu	37	18	44260371	44260371	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:44260371G>A	uc002lcj.1	-	7	1333	c.765C>T	c.(763-765)ACC>ACT	p.T255T	ST8SIA5_uc002lci.1_Silent_p.T102T|ST8SIA5_uc010xcy.1_Silent_p.T291T|ST8SIA5_uc010xcz.1_Silent_p.T224T	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	255	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						TGGACACGTCGGTGTTGCGCG	0.597000													8	10					0	0	1	0	0	
PIAS2	9063	broad.mit.edu	37	18	44444187	44444187	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:44444187T>C	uc002lck.2	-	3	682	c.524A>G	c.(523-525)CAA>CGA	p.Q175R	PIAS2_uc010dnp.2_Intron|PIAS2_uc002lcl.2_Missense_Mutation_p.Q175R|PIAS2_uc010xda.1_5'UTR|PIAS2_uc002lcm.2_Missense_Mutation_p.Q175R|PIAS2_uc002lcn.1_Missense_Mutation_p.Q179R	NM_004671	NP_004662	O75928	PIAS2_HUMAN	protein inhibitor of activated STAT X isoform	175	PINIT.				androgen receptor signaling pathway|negative regulation of androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|PML body	androgen receptor binding|DNA binding|protein binding|SUMO ligase activity|transcription coactivator activity|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						AAACTTCTCTTGAAATCGCTG	0.323000													11	34					0	0	1	0	0	
ZBTB7C	201501	broad.mit.edu	37	18	45567053	45567053	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:45567053A>G	uc002lda.2	-	1	442	c.426T>C	c.(424-426)GAT>GAC	p.D142D	ZBTB7C_uc002ldb.2_Silent_p.D142D|ZBTB7C_uc010dnu.2_Silent_p.D151D|ZBTB7C_uc010dnv.2_Silent_p.D164D|ZBTB7C_uc010dnw.2_Silent_p.D142D|ZBTB7C_uc010dnx.1_Silent_p.D142D|ZBTB7C_uc010dny.1_Silent_p.D142D|ZBTB7C_uc010dnz.1_Silent_p.D164D|ZBTB7C_uc010dob.1_Silent_p.D142D|ZBTB7C_uc010doc.1_Silent_p.D151D|ZBTB7C_uc010dod.1_Silent_p.D164D|ZBTB7C_uc010doe.1_Silent_p.D142D|ZBTB7C_uc010dof.1_Silent_p.D142D|ZBTB7C_uc010dog.1_Silent_p.D142D|ZBTB7C_uc010doh.1_Silent_p.D151D|ZBTB7C_uc010doi.1_Silent_p.D142D|ZBTB7C_uc010doj.1_Silent_p.D151D|ZBTB7C_uc010dok.1_Silent_p.D191D|ZBTB7C_uc010dol.1_Silent_p.D151D|ZBTB7C_uc010doa.1_Silent_p.D164D|ZBTB7C_uc010don.1_Silent_p.D150D|ZBTB7C_uc010doo.1_Silent_p.D142D|ZBTB7C_uc010dop.1_Silent_p.D142D|ZBTB7C_uc010doq.1_Silent_p.D151D|ZBTB7C_uc010dor.1_Silent_p.D164D|ZBTB7C_uc010dos.1_Silent_p.D142D|ZBTB7C_uc010dot.1_Silent_p.D142D|ZBTB7C_uc010dou.1_Silent_p.D151D|ZBTB7C_uc010dom.1_Silent_p.D151D	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	142	Glu-rich.|Asp-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						cgtcgtcgtcatcgtcctcct	0.279000													6	25					0	0	1	0	0	
CXXC1	30827	broad.mit.edu	37	18	47810865	47810865	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:47810865C>A	uc002leq.3	-	9	1821	c.1088G>T	c.(1087-1089)AGG>ATG	p.R363M	MBD1_uc002leg.2_5'Flank|MBD1_uc010dow.1_5'Flank|MBD1_uc002leh.3_5'Flank|MBD1_uc002len.2_5'Flank|MBD1_uc002lei.3_5'Flank|MBD1_uc002lej.3_5'Flank|MBD1_uc002lek.3_5'Flank|MBD1_uc002lel.3_5'Flank|MBD1_uc002lem.3_5'Flank|MBD1_uc010xdj.1_5'Flank|MBD1_uc010xdk.1_5'Flank|MBD1_uc002leo.2_5'Flank|CXXC1_uc002lep.3_Missense_Mutation_p.R220M|CXXC1_uc002ler.3_Missense_Mutation_p.R367M|CXXC1_uc010doy.2_Missense_Mutation_p.R363M|CXXC1_uc002les.2_Missense_Mutation_p.R363M	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	363					histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGCATCAGCCCTCTCTGGGTG	0.602000													26	64					1.42536e-11	1.50549e-11	1	1	0	
DCC	1630	broad.mit.edu	37	18	50741932	50741932	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:50741932C>T	uc002lfe.1	+	12	2463	c.1876C>T	c.(1876-1878)CCT>TCT	p.P626S	DCC_uc010xdr.1_Missense_Mutation_p.P474S|DCC_uc010dpf.1_Missense_Mutation_p.P281S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	626	Extracellular (Potential).|Fibronectin type-III 3.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AAGTGCCCCGCCTCAGAACGT	0.398000													30	63					0	0	1	0	0	
DCC	1630	broad.mit.edu	37	18	50976949	50976949	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:50976949G>A	uc002lfe.1	+	23	3896	c.3309G>A	c.(3307-3309)GTG>GTA	p.V1103V	DCC_uc010dpf.1_Silent_p.V738V	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1103	Helical; (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane		p.V1103L(1)		skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGATCATTGTGGTCACCGTTG	0.527000													17	34					0	0	1	0	0	
MBD2	8932	broad.mit.edu	37	18	51690978	51690978	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:51690978C>T	uc002lfg.1	-	5	1253	c.1024G>A	c.(1024-1026)GCT>ACT	p.A342T		NM_003927	NP_003918	Q9UBB5	MBD2_HUMAN	methyl-CpG binding domain protein 2 isoform 1	342					transcription, DNA-dependent		C2H2 zinc finger domain binding|methyl-CpG binding|satellite DNA binding				0				Colorectal(16;0.0212)|READ - Rectum adenocarcinoma(32;0.188)	Hexobarbital(DB01355)	TCCACAGCAGCGGAGACTTGC	0.478000													10	59					0	0	1	0	0	
CCBE1	147372	broad.mit.edu	37	18	57106992	57106992	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:57106992G>A	uc002lib.2	-	8	902	c.832C>T	c.(832-834)CAG>TAG	p.Q278*	CCBE1_uc010dpq.2_Intron|CCBE1_uc002lia.2_Nonsense_Mutation_p.Q131*	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	278	Collagen-like 1.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GGGCCGGGCTGCCCAGGAGGG	0.587000													23	42					0	0	1	0	0	
CDH20	28316	broad.mit.edu	37	18	59221521	59221521	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:59221521G>A	uc010dps.1	+	11	2011	c.1999G>A	c.(1999-2001)GAC>AAC	p.D667N	CDH20_uc002lif.2_Missense_Mutation_p.D661N	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	667	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CCGCTACGACGACGAGGGCGG	0.642000													34	87					0	0	1	0	0	
BCL2	596	broad.mit.edu	37	18	60985607	60985607	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:60985607C>T	uc002lit.1	-	2	786	c.293G>A	c.(292-294)CGC>CAC	p.R98H	BCL2_uc002liu.1_Missense_Mutation_p.R98H|BCL2_uc002liv.1_Missense_Mutation_p.R98H	NM_000633	NP_000624	P10415	BCL2_HUMAN	B-cell lymphoma protein 2 alpha isoform	98	BH3.				activation of pro-apoptotic gene products|anti-apoptosis|apoptosis in response to endoplasmic reticulum stress|B cell proliferation|B cell receptor signaling pathway|defense response to virus|female pregnancy|humoral immune response|induction of apoptosis by intracellular signals|negative regulation of cellular pH reduction|negative regulation of mitochondrial depolarization|negative regulation of neuron apoptosis|neuron apoptosis|positive regulation of B cell proliferation|positive regulation of cell growth|protein polyubiquitination|regulation of mitochondrial membrane permeability|regulation of mitochondrial membrane potential|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|regulation of transmembrane transporter activity|release of cytochrome c from mitochondria|response to cytokine stimulus|response to DNA damage stimulus|response to drug|response to iron ion|response to nicotine|response to toxin	endoplasmic reticulum membrane|mitochondrial outer membrane|nuclear membrane|pore complex	BH3 domain binding|channel activity|protease binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|ubiquitin protein ligase binding			central_nervous_system(1)	1		all_hematologic(56;1.18e-20)|Prostate(75;0.0872)		Lung(128;0.0234)|READ - Rectum adenocarcinoma(59;0.0935)	Docetaxel(DB01248)|Fludarabine(DB01073)|Melatonin(DB01065)|Paclitaxel(DB01229)|Rasagiline(DB01367)	GCCGGCCTGGCGGAGGGTCAG	0.612000			T	IGH@	NHL|CLL								9	26					0	0	1	0	0	
ZNF407	55628	broad.mit.edu	37	18	72345425	72345425	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:72345425C>T	uc002llw.2	+	1	2507	c.2450C>T	c.(2449-2451)GCG>GTG	p.A817V	ZNF407_uc010xfc.1_Missense_Mutation_p.A817V|ZNF407_uc010dqu.1_Missense_Mutation_p.A817V|ZNF407_uc002llu.2_Missense_Mutation_p.A816V	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	817					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GGCATGCTGGCGTCTGAGGAA	0.443000													33	99					0	0	1	0	0	
ZNF407	55628	broad.mit.edu	37	18	72346151	72346151	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:72346151G>A	uc002llw.2	+	1	3233	c.3176G>A	c.(3175-3177)CGC>CAC	p.R1059H	ZNF407_uc010xfc.1_Missense_Mutation_p.R1059H|ZNF407_uc010dqu.1_Missense_Mutation_p.R1059H|ZNF407_uc002llu.2_Missense_Mutation_p.R1058H	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1059	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GTGACTCGTCGCGAGATGACC	0.453000													29	59					0	0	1	0	0	
CTDP1	9150	broad.mit.edu	37	18	77475105	77475105	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:77475105G>A	uc002lnh.1	+	8	1792	c.1645G>A	c.(1645-1647)GCC>ACC	p.A549T	CTDP1_uc002lni.1_Missense_Mutation_p.A549T|CTDP1_uc010drd.1_Missense_Mutation_p.A549T	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	549					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		CAACGGCTGTGCCGACAGGAA	0.632000													3	12					0	0	1	0	0	
ABCA7	10347	broad.mit.edu	37	19	1047260	1047260	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:1047260C>T	uc002lqw.3	+	15	2181	c.1950C>T	c.(1948-1950)TTC>TTT	p.F650F	ABCA7_uc010dsb.1_Silent_p.F512F	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	650					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCCTTCTTCTCCCGCGCCA	0.687000													6	10					0	0	1	0	0	
HMHA1	23526	broad.mit.edu	37	19	1080463	1080463	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:1080463C>T	uc002lqz.1	+	15	2060	c.1829C>T	c.(1828-1830)GCC>GTC	p.A610V	HMHA1_uc010xgd.1_Missense_Mutation_p.A626V|HMHA1_uc010xge.1_Missense_Mutation_p.A478V|HMHA1_uc002lra.1_Missense_Mutation_p.A450V|HMHA1_uc002lrb.1_Missense_Mutation_p.A493V|HMHA1_uc002lrc.1_Missense_Mutation_p.A245V|HMHA1_uc002lrd.1_5'Flank|HMHA1_uc010dsd.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	610					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTTCTCCAGCCGGGCGAGGA	0.692000													23	45					0	0	1	0	0	
MEX3D	399664	broad.mit.edu	37	19	1555600	1555600	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:1555600G>A	uc010dsn.2	-	2	1918	c.1918C>T	c.(1918-1920)CGC>TGC	p.R640C		NM_203304	NP_976049	Q86XN8	MEX3D_HUMAN	ring finger and KH domain containing 1	640	RING-type.				mRNA destabilization|posttranscriptional regulation of gene expression by mRNA localization|regulation of anti-apoptosis	nucleus|perinuclear region of cytoplasm	AU-rich element binding|zinc ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCGGCGTGCGGCAGGCGGGA	0.572000													4	6					0	0	1	0	0	
ADAT3	113179	broad.mit.edu	37	19	1912977	1912977	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:1912977G>A	uc002luh.2	+	2	1111	c.883G>A	c.(883-885)GCC>ACC	p.A295T	SCAMP4_uc002lui.1_Intron|SCAMP4_uc002luj.2_Intron|SCAMP4_uc002luk.2_Intron|SCAMP4_uc010dss.2_Intron	NM_138422	NP_612431	Q96EY9	ADAT3_HUMAN	tRNA-specific adenosine deaminase 3	295					tRNA processing		hydrolase activity|zinc ion binding			breast(1)|skin(1)	2		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCCATGTGCGCCATGGCCCT	0.711000													11	46					0	0	1	0	0	
ZNF554	115196	broad.mit.edu	37	19	2827741	2827741	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:2827741G>T	uc002lwm.2	+	3	451	c.253G>T	c.(253-255)GAA>TAA	p.E85*	ZNF554_uc002lwl.2_Nonsense_Mutation_p.E34*	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	85	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTCTCCCTGGGTAAGGCAAG	0.343000													12	34					2.80697e-09	2.93668e-09	1	1	0	
C19orf29	58509	broad.mit.edu	37	19	3623901	3623901	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:3623901G>A	uc002lyh.2	-	2	480	c.427C>T	c.(427-429)CGG>TGG	p.R143W	C19orf29_uc010dtn.2_5'Flank|C19orf29_uc002lyi.3_Missense_Mutation_p.R143W|C19orf29_uc010dto.2_RNA	NM_001080543	NP_001074012	Q8WUQ7	CS029_HUMAN	chromosome 19 open reading frame 29	143	Potential.					catalytic step 2 spliceosome	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCCGCAGCCGCTCCTGCAGG	0.711000													13	11					0	0	1	0	0	
MAP2K2	5605	broad.mit.edu	37	19	4117504	4117504	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:4117504G>A	uc002lzk.2	-	2	470	c.216C>T	c.(214-216)TTC>TTT	p.F72F		NM_030662	NP_109587	P36507	MP2K2_HUMAN	mitogen-activated protein kinase kinase 2	72	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|extracellular region	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		AGATCCTTTCGAAGTCATCGT	0.597000									Cardiofaciocutaneous_syndrome				27	49					0	0	1	0	0	
CREB3L3	84699	broad.mit.edu	37	19	4164608	4164608	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:4164608A>G	uc002lzl.2	+	5	801	c.685A>G	c.(685-687)ACC>GCC	p.T229A	CREB3L3_uc002lzm.2_Missense_Mutation_p.T219A|CREB3L3_uc010xib.1_Missense_Mutation_p.T218A|CREB3L3_uc010xic.1_Missense_Mutation_p.T220A	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	229	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAAGGCATCACCCTGCCCAC	0.617000													16	31					0	0	1	0	0	
CHAF1A	10036	broad.mit.edu	37	19	4422729	4422729	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:4422729A>C	uc002mal.2	+	5	1284	c.1184A>C	c.(1183-1185)AAG>ACG	p.K395T		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	395	Arg/Glu/Lys-rich.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		aaggatgagaaggagaaggCG	0.418000								Chromatin_Structure					4	14					0	0	1	0	0	
TICAM1	148022	broad.mit.edu	37	19	4817366	4817366	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:4817366T>C	uc002mbi.2	-	2	1275	c.1024A>G	c.(1024-1026)ACC>GCC	p.T342A		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	342	Pro-rich.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		TTTGGAGAGGTGGTATCTTCT	0.478000													15	46					0	0	1	0	0	
ZNRF4	148066	broad.mit.edu	37	19	5456007	5456007	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:5456007G>A	uc002mca.3	+	1	582	c.505G>A	c.(505-507)GAC>AAC	p.D169N		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	169	Extracellular (Potential).|PA.					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		CTGCACCTTCGACCTCAAGGT	0.667000													8	24					0	0	1	0	0	
SAFB2	9667	broad.mit.edu	37	19	5590363	5590363	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:5590363G>A	uc002mcd.2	-	18	2663	c.2451C>T	c.(2449-2451)GAC>GAT	p.D817D		NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	817	Interacts with SAFB1.|Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		CATCACGGGAGTCCCGGCCGT	0.687000													7	4					0	0	1	0	0	
C19orf70	125988	broad.mit.edu	37	19	5679395	5679395	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:5679395G>C	uc002mch.1	-	3	634	c.220C>G	c.(220-222)CCA>GCA	p.P74A	C19orf70_uc002mci.1_3'UTR|HSD11B1L_uc002mcj.2_5'Flank|HSD11B1L_uc002mcu.2_5'Flank|HSD11B1L_uc002mcl.2_5'Flank|HSD11B1L_uc002mcm.2_5'Flank|HSD11B1L_uc002mcq.2_5'Flank|HSD11B1L_uc002mcr.2_5'Flank|HSD11B1L_uc002mcs.2_5'Flank|HSD11B1L_uc010dug.2_5'Flank|HSD11B1L_uc002mct.2_5'Flank|HSD11B1L_uc002mck.2_5'Flank|HSD11B1L_uc002mco.2_5'Flank|HSD11B1L_uc002mcn.2_5'Flank|HSD11B1L_uc002mcp.2_5'Flank	NM_205767	NP_991330	Q5XKP0	QIL1_HUMAN	hypothetical protein LOC125988	74							protein binding				0						TAAATCTTTGGAGGGGCTGGG	0.567000													3	13					0	0	1	0	0	
RFX2	5990	broad.mit.edu	37	19	6007164	6007164	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:6007164C>T	uc002meb.2	-	12	1530	c.1261G>A	c.(1261-1263)GAG>AAG	p.E421K	RFX2_uc002mec.2_Missense_Mutation_p.E396K|RFX2_uc002med.1_3'UTR	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	421					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						ACGGCGCCCTCGGGGTCTTCG	0.667000													4	39					0	0	1	0	0	
SLC25A23	79085	broad.mit.edu	37	19	6454638	6454638	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:6454638C>T	uc002mex.1	-	5	716	c.574G>A	c.(574-576)GGC>AGC	p.G192S	SLC25A23_uc002mev.2_RNA|SLC25A23_uc010xjd.1_Missense_Mutation_p.G9S	NM_024103	NP_077008	Q9BV35	SCMC3_HUMAN	solute carrier family 25, member 23	192	Solcar 1.|Helical; Name=1; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)|pancreas(1)	2						GCCACTGCGCCGGCCACCAGC	0.627000													19	30					0	0	1	0	0	
ARHGEF18	23370	broad.mit.edu	37	19	7531846	7531846	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:7531846G>A	uc002mgi.2	+	14	2636	c.2383G>A	c.(2383-2385)GTC>ATC	p.V795I	ARHGEF18_uc010xjm.1_Missense_Mutation_p.V637I|ARHGEF18_uc002mgh.2_Missense_Mutation_p.V637I|ARHGEF18_uc002mgj.1_Missense_Mutation_p.V438I	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	795					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				TCTGCCCACCGTCCTGGAGTC	0.637000													24	47					0	0	1	0	0	
STXBP2	6813	broad.mit.edu	37	19	7707183	7707183	+	Missense_Mutation	SNP	C	T	T	rs140252723		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:7707183C>T	uc002mha.3	+	9	803	c.758C>T	c.(757-759)GCG>GTG	p.A253V	STXBP2_uc002mhb.3_Missense_Mutation_p.A250V|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Missense_Mutation_p.A264V|STXBP2_uc010dvk.2_Missense_Mutation_p.A221V|STXBP2_uc002mhc.3_Missense_Mutation_p.A21V|STXBP2_uc002mhe.1_5'Flank	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	253					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						CAGGCCATGGCGTATGATCTG	0.612000													13	43					0	0	1	0	0	
SNAPC2	6618	broad.mit.edu	37	19	7986933	7986933	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:7986933C>T	uc002miw.1	+	4	409	c.386C>T	c.(385-387)GCG>GTG	p.A129V	SNAPC2_uc002mix.1_RNA	NM_003083	NP_003074	Q13487	SNPC2_HUMAN	small nuclear RNA activating complex,	129					snRNA transcription|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	sequence-specific DNA binding transcription factor activity				0						CTCACCATCGCGGCCACGGAA	0.632000													42	121					0	0	1	0	0	
FBN3	84467	broad.mit.edu	37	19	8171110	8171110	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:8171110G>A	uc002mjf.2	-	37	4716	c.4695C>T	c.(4693-4695)GAC>GAT	p.D1565D		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1565	EGF-like 24; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CTTGGCACTCGTCGATGTCTG	0.587000													19	24					0	0	1	0	0	
ADAMTS10	81794	broad.mit.edu	37	19	8657677	8657677	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:8657677C>T	uc002mkj.1	-	13	1831	c.1557G>A	c.(1555-1557)ACG>ACA	p.T519T	ADAMTS10_uc002mki.1_5'Flank|ADAMTS10_uc002mkk.1_Silent_p.T151T	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	519	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						TCTGGCACAGCGTGCCCTCGG	0.706000													4	8					0	0	1	0	0	
ACTL9	284382	broad.mit.edu	37	19	8808703	8808703	+	Missense_Mutation	SNP	C	T	T	rs145751201		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:8808703C>T	uc002mkl.2	-	1	470	c.349G>A	c.(349-351)GGC>AGC	p.G117S		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	117						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						ACGACGATGCCGCTGCGCAGG	0.692000													18	14					0	0	1	0	0	
ACTL9	284382	broad.mit.edu	37	19	8808765	8808765	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:8808765G>A	uc002mkl.2	-	1	408	c.287C>T	c.(286-288)ACG>ATG	p.T96M		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	96						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						GCCGATGAACGTCTGCAGCCC	0.687000													10	16					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	8969323	8969323	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:8969323G>A	uc002mkp.2	-	79	43225	c.43021C>T	c.(43021-43023)CCA>TCA	p.P14341S	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.P1141S|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGTGCCTGGCTGGGCTTTG	0.493000													25	68					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	8993496	8993496	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:8993496G>A	uc002mkp.2	-	66	41797	c.41593C>T	c.(41593-41595)CGC>TGC	p.R13865C	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R682C|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13868	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGTCAGGGCGGTGGGTGCAG	0.592000													34	57					0	0	1	0	0	
ZNF317	57693	broad.mit.edu	37	19	9271917	9271917	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:9271917C>T	uc002mku.2	+	7	1871	c.1596C>T	c.(1594-1596)TGC>TGT	p.C532C	ZNF317_uc002mkv.2_Silent_p.C391C|ZNF317_uc002mkw.2_Silent_p.C500C|ZNF317_uc002mkx.2_Silent_p.C447C|ZNF317_uc002mky.2_Silent_p.C415C	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	532	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGTACGAATGCGATCACTGTG	0.567000													13	37					0	0	1	0	0	
OR7E24	26648	broad.mit.edu	37	19	9362175	9362175	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:9362175C>T	uc002mlb.1	+	1	456	c.456C>T	c.(454-456)ATC>ATT	p.I152I		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	152	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACTACCGAATCATCATGAACC	0.438000													11	54					0	0	1	0	0	
TYK2	7297	broad.mit.edu	37	19	10476480	10476480	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:10476480G>T	uc002moc.3	-	7	1102	c.724C>A	c.(724-726)CTG>ATG	p.L242M	TYK2_uc010dxe.2_Missense_Mutation_p.L57M|TYK2_uc002mod.2_Missense_Mutation_p.L242M	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	242	FERM.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			AAGTCCCGCAGGAACCTGCGG	0.662000													4	12					0.000602214	0.000609462	1	1	0	
ZNF823	55552	broad.mit.edu	37	19	11833336	11833336	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:11833336C>A	uc002msm.2	-	4	1139	c.1013G>T	c.(1012-1014)GGG>GTG	p.G338V	ZNF823_uc010xmd.1_Missense_Mutation_p.G156V|ZNF823_uc010dyi.1_Missense_Mutation_p.G294V	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	338	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AAAGCCTTTCCCACATATCTT	0.408000										HNSCC(68;0.2)			32	106					9.65021e-13	1.02417e-12	1	1	0	
TNPO2	30000	broad.mit.edu	37	19	12817053	12817053	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:12817053A>G	uc002muo.2	-	14	1810	c.1625T>C	c.(1624-1626)ATT>ACT	p.I542T	TNPO2_uc002mup.2_Missense_Mutation_p.I634T|TNPO2_uc002muq.2_Missense_Mutation_p.I542T|TNPO2_uc002mur.2_Missense_Mutation_p.I542T	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	542	HEAT 9.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						CAGGGTGCCAATGGCGTCATA	0.572000													7	17					0	0	1	0	0	
CACNA1A	773	broad.mit.edu	37	19	13418632	13418632	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:13418632G>A	uc010dze.2	-	15	2189	c.1953C>T	c.(1951-1953)TTC>TTT	p.F651F	CACNA1A_uc010dzc.2_Silent_p.F176F|CACNA1A_uc002mwy.3_Silent_p.F650F|CACNA1A_uc010xne.1_Silent_p.F176F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	651	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GAAAAGTATCGAAGTTGGTGG	0.557000													22	58					0	0	1	0	0	
CACNA1A	773	broad.mit.edu	37	19	13616881	13616881	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:13616881G>A	uc010dze.2	-	1	394	c.158C>T	c.(157-159)GCG>GTG	p.A53V	CACNA1A_uc002mwy.3_Missense_Mutation_p.A53V	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	53	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CGCTCTCTGCGCCATTGACTG	0.677000													7	17					0	0	1	0	0	
CC2D1A	54862	broad.mit.edu	37	19	14028985	14028985	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:14028985C>T	uc002mxo.2	+	7	1150	c.851C>T	c.(850-852)GCT>GTT	p.A284V	CC2D1A_uc002mxn.2_Missense_Mutation_p.A183V|CC2D1A_uc002mxp.2_Missense_Mutation_p.A284V|CC2D1A_uc010dzh.2_5'UTR|CC2D1A_uc002mxq.1_5'Flank	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	284	Pro-rich.				positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			ACTGCTGCCGCTAGACACTTC	0.572000													2	2					0	0	1	0	0	
ZNF333	84449	broad.mit.edu	37	19	14830032	14830032	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:14830032C>A	uc002mzn.2	+	12	2027	c.1893C>A	c.(1891-1893)TCC>TCA	p.S631S	ZNF333_uc002mzk.3_Silent_p.S522S	NM_032433	NP_115809	Q96JL9	ZN333_HUMAN	zinc finger protein 333	631	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGCACAGCTCCTCACTCACTG	0.483000													9	109					5.4927e-09	5.73971e-09	1	1	0	
EMR2	30817	broad.mit.edu	37	19	14863142	14863142	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:14863142T>G	uc002mzp.1	-	15	2243	c.1787A>C	c.(1786-1788)AAG>ACG	p.K596T	EMR2_uc010dzs.1_Missense_Mutation_p.K55T|EMR2_uc010xnw.1_Missense_Mutation_p.K538T|EMR2_uc002mzo.1_Missense_Mutation_p.K585T|EMR2_uc002mzq.1_Missense_Mutation_p.K536T|EMR2_uc002mzr.1_Missense_Mutation_p.K547T|EMR2_uc002mzs.1_Missense_Mutation_p.K454T|EMR2_uc002mzt.1_Missense_Mutation_p.K492T|EMR2_uc002mzu.1_Missense_Mutation_p.K503T|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	596	Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						TGTCAATACCTTGTGTCCGGT	0.537000													11	39					0	0	1	0	0	
OR1I1	126370	broad.mit.edu	37	19	15198171	15198171	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:15198171A>G	uc010xoe.1	+	1	295	c.295A>G	c.(295-297)ACC>GCC	p.T99A		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						GGGCTGCCTCACCCAGATGTA	0.572000													16	33					0	0	1	0	0	
NOTCH3	4854	broad.mit.edu	37	19	15276888	15276888	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:15276888G>A	uc002nan.2	-	30	5453	c.5377C>T	c.(5377-5379)CTA>TTA	p.L1793L		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1793	Cytoplasmic (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GCCAGCATTAGCGGGGTGAAG	0.532000													10	32					0	0	1	0	0	
AKAP8L	26993	broad.mit.edu	37	19	15511794	15511794	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:15511794G>A	uc002naw.1	-	6	976	c.877C>T	c.(877-879)CGC>TGC	p.R293C	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Missense_Mutation_p.R232C|AKAP8L_uc002nay.1_Missense_Mutation_p.R293C|AKAP8L_uc002naz.2_Missense_Mutation_p.R141C	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	293						cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						CAGTCCGTGCGGGTGGCTTTG	0.602000													9	24					0	0	1	0	0	
AKAP8L	26993	broad.mit.edu	37	19	15529797	15529797	+	Translation_Start_Site	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:15529797G>C	uc002naw.1	-	1	37	c.-62C>G	c.(-64--60)ATCGC>ATGGC		AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Translation_Start_Site|AKAP8L_uc002nay.1_Translation_Start_Site	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like							cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						CCGACGCTGCGATAGCTGCTG	0.647000											OREG0025320	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	28					0	0	1	0	0	
CYP4F2	8529	broad.mit.edu	37	19	16001193	16001193	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:16001193A>G	uc002nbs.1	-	6	626	c.576T>C	c.(574-576)TTT>TTC	p.F192F	CYP4F2_uc010xot.1_Silent_p.F43F|CYP4F2_uc010xou.1_Silent_p.F43F	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	192					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						TGATGTGCTCAAACATATCCA	0.537000													40	80					0	0	1	0	0	
CHERP	10523	broad.mit.edu	37	19	16641614	16641614	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:16641614G>A	uc002nei.1	-	6	826	c.752C>T	c.(751-753)GCC>GTC	p.A251V	MED26_uc002nee.2_Intron	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	251	CID.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						TTCCTCCACGGCCAAGAAGCT	0.677000													17	26					0	0	1	0	0	
MED26	9441	broad.mit.edu	37	19	16687637	16687637	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:16687637G>A	uc002nen.1	-	3	1265	c.1004C>T	c.(1003-1005)GCG>GTG	p.A335V	MED26_uc002nee.2_RNA	NM_004831	NP_004822	O95402	MED26_HUMAN	mediator complex subunit 26	335					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|RNA polymerase II transcription cofactor activity|transcription coactivator activity			ovary(2)	2						TGGGCTTTCCGCACTGGGCAG	0.721000													4	11					0	0	1	0	0	
F2RL3	9002	broad.mit.edu	37	19	17001347	17001347	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:17001347G>A	uc002nfa.2	+	2	1248	c.1073G>A	c.(1072-1074)CGG>CAG	p.R358Q		NM_003950	NP_003941	Q96RI0	PAR4_HUMAN	coagulation factor II (thrombin) receptor-like 3	358	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation|positive regulation of release of sequestered calcium ion into cytosol	extracellular region|integral to plasma membrane	thrombin receptor activity				0						CTCTTCCAACGGTCGCCGGGG	0.647000													3	9					0	0	1	0	0	
NR2F6	2063	broad.mit.edu	37	19	17343175	17343175	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:17343175C>T	uc002nfq.2	-	4	1323	c.1201G>A	c.(1201-1203)GGC>AGC	p.G401S		NM_005234	NP_005225	P10588	NR2F6_HUMAN	nuclear receptor subfamily 2, group F, member 6	401	Important for dimerization (By similarity).|Ligand-binding (By similarity).				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding				0						TGGCCCGAGCCGTAGGGCCAG	0.632000													15	36					0	0	1	0	0	
ANO8	57719	broad.mit.edu	37	19	17435799	17435799	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:17435799G>A	uc002ngf.2	-	17	3217	c.3058C>T	c.(3058-3060)CGC>TGC	p.R1020C	ANO8_uc010eap.2_RNA	NM_020959	NP_066010	Q9HCE9	ANO8_HUMAN	anoctamin 8	1020	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(3)	3						GCAGGCAGGCGGGTGTCGCTG	0.662000													52	111					0	0	1	0	0	
B3GNT3	10331	broad.mit.edu	37	19	17919075	17919075	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:17919075G>A	uc002nhk.1	+	2	544	c.459G>A	c.(457-459)CCG>CCA	p.P153P	B3GNT3_uc002nhl.1_Silent_p.P153P|B3GNT3_uc010ebd.1_Silent_p.P153P|B3GNT3_uc010ebe.1_Silent_p.P153P	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	153	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						CCTCCAACCCGCACGAGGCCC	0.667000													16	24					0	0	1	0	0	
PDE4C	5143	broad.mit.edu	37	19	18321960	18321960	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:18321960G>A	uc010xqc.1	-	15	2398	c.1918C>T	c.(1918-1920)CGA>TGA	p.R640*	PDE4C_uc002nik.3_Nonsense_Mutation_p.R640*|PDE4C_uc002nil.3_Nonsense_Mutation_p.R640*|PDE4C_uc002nif.3_Nonsense_Mutation_p.R409*|PDE4C_uc002nig.3_Nonsense_Mutation_p.R355*|PDE4C_uc002nih.3_Nonsense_Mutation_p.R410*|PDE4C_uc010ebk.2_Nonsense_Mutation_p.R534*|PDE4C_uc002nii.3_Nonsense_Mutation_p.R608*|PDE4C_uc010ebl.2_Nonsense_Mutation_p.R354*	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	640					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GAGGGACTTCGGGGGATCTTG	0.502000													21	32					0	0	1	0	0	
NCAN	1463	broad.mit.edu	37	19	19351410	19351410	+	Splice_Site	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:19351410A>G	uc002nlz.2	+	12	3509	c.3410_splice	c.e12-2	p.S1137_splice	NCAN_uc002nma.2_5'UTR	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor						axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CCGACCCTGCAGGCTTTGGGC	0.612000													14	38					0	0	1	0	0	
TSSK6	83983	broad.mit.edu	37	19	19626094	19626094	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:19626094G>A	uc002nmr.2	-	1	376	c.143C>T	c.(142-144)GCG>GTG	p.A48V	TSSK6_uc002nmq.2_RNA|NDUFA13_uc002nms.2_5'Flank|NDUFA13_uc010xqx.1_5'Flank|NDUFA13_uc010xqy.1_5'Flank	NM_032037	NP_114426	Q9BXA6	TSSK6_HUMAN	testis-specific serine kinase 6	48	Protein kinase.				multicellular organismal development|sperm chromatin condensation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			stomach(1)	1						GTCCGGGGGCGCTCGCCGCCG	0.627000													17	33					0	0	1	0	0	
ZNF714	148206	broad.mit.edu	37	19	21300002	21300002	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:21300002G>A	uc002npo.3	+	6	895	c.535G>A	c.(535-537)GAC>AAC	p.D179N	ZNF714_uc002npl.2_Missense_Mutation_p.D24N|ZNF714_uc010ecp.1_Missense_Mutation_p.D130N|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	179	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAAGAATGTGACAAAGTGTT	0.343000													26	54					0	0	1	0	0	
ZNF714	148206	broad.mit.edu	37	19	21300018	21300018	+	Missense_Mutation	SNP	G	A	A	rs61740552		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:21300018G>A	uc002npo.3	+	6	911	c.551G>A	c.(550-552)CGG>CAG	p.R184Q	ZNF714_uc002npl.2_Missense_Mutation_p.R29Q|ZNF714_uc010ecp.1_Missense_Mutation_p.R135Q|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	184	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGTTTAAGCGGTTCTCAACC	0.368000													25	55					0	0	1	0	0	
ZNF738	148203	broad.mit.edu	37	19	21558670	21558670	+	Splice_Site	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:21558670G>A	uc002nps.3	+	4	432	c.224_splice	c.e4-1	p.G75_splice	ZNF738_uc002npt.3_Splice_Site	NR_027130				SubName: Full=cDNA FLJ14673 fis, clone NT2RP2003714, moderately similar to Zinc finger protein 430;												0						TAATAAATCAGGTATTGATGT	0.373000													27	42					0	0	1	0	0	
ZNF208	7757	broad.mit.edu	37	19	22155306	22155306	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:22155306T>C	uc002nqp.2	-	5	2379	c.2230A>G	c.(2230-2232)AAG>GAG	p.K744E	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ATTGAGAACTTACTAAAGGCT	0.393000													22	54					0	0	1	0	0	
ZNF257	113835	broad.mit.edu	37	19	22271811	22271811	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:22271811A>T	uc010ecx.2	+	4	1428	c.1259A>T	c.(1258-1260)CAG>CTG	p.Q420L	ZNF257_uc010ecy.2_Missense_Mutation_p.Q388L	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	420	C2H2-type 9; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACCCTTACTCAGCATAAGATA	0.368000													4	55					0	0	1	0	0	
GPATCH1	55094	broad.mit.edu	37	19	33600752	33600752	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:33600752G>A	uc002nug.1	+	11	1729	c.1415G>A	c.(1414-1416)AGC>AAC	p.S472N		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	472						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					GCTCAGAGCAGCAGAGCCCAG	0.552000													15	48					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	19	34583920	34583920	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:34583920C>T	uc002nuz.2	-	1	294	c.242G>A	c.(241-243)CGT>CAT	p.R81H						full-length cDNA clone CS0DE007YF24 of Placenta of Homo sapiens (human).																		ATAGATCAGACGGAAACCCTC	0.423000													8	21					0	0	1	0	0	
DMKN	93099	broad.mit.edu	37	19	36004029	36004029	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:36004029C>T	uc002nzm.3	-	1	532	c.349G>A	c.(349-351)GCA>ACA	p.A117T	DMKN_uc002nzj.2_5'Flank|DMKN_uc002nzk.3_5'Flank|DMKN_uc002nzl.3_5'Flank|DMKN_uc002nzo.3_Missense_Mutation_p.A117T|DMKN_uc002nzn.3_Missense_Mutation_p.A117T|DMKN_uc002nzw.2_5'Flank|DMKN_uc002nzr.2_5'Flank|DMKN_uc002nzp.2_5'Flank|DMKN_uc002nzq.2_5'Flank|DMKN_uc002nzt.2_5'Flank|DMKN_uc002nzs.2_5'Flank|DMKN_uc002nzu.2_5'Flank|DMKN_uc002nzv.2_5'Flank|DMKN_uc010xsv.1_5'Flank|DMKN_uc010xsw.1_5'Flank|DMKN_uc002nzx.3_5'Flank|DMKN_uc002nzy.3_5'Flank|DMKN_uc002nzz.2_5'Flank|DMKN_uc002oac.3_Missense_Mutation_p.A117T|DMKN_uc010eeb.2_Missense_Mutation_p.A117T|DMKN_uc002oaa.3_Missense_Mutation_p.A117T|DMKN_uc002oab.3_Missense_Mutation_p.A117T	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor	117	Gly-rich.					extracellular region				large_intestine(1)|ovary(1)|skin(1)	3	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			ACATCTTCTGCCTGTCTGCCA	0.617000													19	30					0	0	1	0	0	
TMEM147	10430	broad.mit.edu	37	19	36038038	36038038	+	Silent	SNP	G	A	A	rs141810425		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:36038038G>A	uc002oaj.1	+	6	544	c.447G>A	c.(445-447)GCG>GCA	p.A149A	uc010eec.1_5'Flank|uc002oag.2_5'Flank|TMEM147_uc002oai.1_Silent_p.A100A|TMEM147_uc002oak.1_Silent_p.A104A	NM_032635	NP_116024	Q9BVK8	TM147_HUMAN	transmembrane protein 147	149	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			ACATCGTCGCGTCTGCTCAGG	0.552000													22	48					0	0	1	0	0	
RBM42	79171	broad.mit.edu	37	19	36128234	36128234	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:36128234G>A	uc002oan.2	+	9	1386	c.1310G>A	c.(1309-1311)CGC>CAC	p.R437H	RBM42_uc010eef.2_Missense_Mutation_p.R383H|RBM42_uc002oao.2_Missense_Mutation_p.R415H|RBM42_uc002oap.2_Missense_Mutation_p.R407H|RBM42_uc002oaq.2_Missense_Mutation_p.R408H|RBM42_uc010eeg.2_Intron	NM_024321	NP_077297	Q9BTD8	RBM42_HUMAN	RNA binding motif protein 42	437	Necessary for interaction with HNRNPK (By similarity).|RRM.					cytoplasm|nucleus	nucleotide binding|RNA binding				0	all_lung(56;1.58e-07)|Lung NSC(56;2.43e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GACTACGTGCGCGCCATGCGT	0.632000													15	37					0	0	1	0	0	
ZBTB32	27033	broad.mit.edu	37	19	36206345	36206345	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:36206345G>A	uc002oay.2	+	2	1027	c.817G>A	c.(817-819)GGC>AGC	p.G273S	ZBTB32_uc002oaz.2_RNA|MLL4_uc010eei.2_5'Flank	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	273					DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GCCCAGATATGGCATTCCCTT	0.657000													23	50					0	0	1	0	0	
ARHGAP33	115703	broad.mit.edu	37	19	36276226	36276226	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:36276226G>A	uc002obr.1	+	18	1942	c.1857G>A	c.(1855-1857)CCG>CCA	p.P619P	ARHGAP33_uc002obs.1_Silent_p.P619P|ARHGAP33_uc002obt.1_Silent_p.P483P|ARHGAP33_uc010eel.2_Silent_p.P207P|ARHGAP33_uc002obv.1_Silent_p.P207P	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	619					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GTGCCCCACCGCAGCCTTCAG	0.687000													18	22					0	0	1	0	0	
ARHGAP33	115703	broad.mit.edu	37	19	36279117	36279117	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:36279117G>A	uc002obs.1	+	21	3252	c.3167G>A	c.(3166-3168)CGT>CAT	p.R1056H	ARHGAP33_uc002obt.1_Missense_Mutation_p.R1053H|ARHGAP33_uc010eel.2_Intron|ARHGAP33_uc002obv.1_Missense_Mutation_p.R805H	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	1217					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						TGGGGACCCCGTACCCCTCAT	0.706000													21	24					0	0	1	0	0	
ZFP14	57677	broad.mit.edu	37	19	36853090	36853090	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:36853090C>T	uc002odx.1	-	2	153	c.60G>A	c.(58-60)TGG>TGA	p.W20*	ZFP14_uc010xtd.1_Nonsense_Mutation_p.W20*|ZFP14_uc010eex.1_Nonsense_Mutation_p.W20*	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	20	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					CCAGGAATTCCCATTCTTCCT	0.378000													25	38					0	0	1	0	0	
ZNF569	148266	broad.mit.edu	37	19	37903985	37903985	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:37903985A>G	uc002ogi.2	-	6	2133	c.1575T>C	c.(1573-1575)AAT>AAC	p.N525N	ZNF569_uc002ogh.2_Silent_p.N366N|ZNF569_uc002ogj.2_Silent_p.N549N	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	525	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TACCACATTCATTACAATCAT	0.373000													32	86					0	0	1	0	0	
RYR1	6261	broad.mit.edu	37	19	39019237	39019237	+	Splice_Site	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:39019237A>G	uc002oit.2	+	75	11068	c.10938_splice	c.e75-2	p.T3646_splice	RYR1_uc002oiu.2_Splice_Site_p.T3641_splice|RYR1_uc002oiv.1_Splice_Site_p.T561_splice|RYR1_uc010xuf.1_Splice_Site_p.T566_splice	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1						muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCTCCCCTGCAGGCACCGGGC	0.597000													11	21					0	0	1	0	0	
ACTN4	81	broad.mit.edu	37	19	39214943	39214943	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:39214943C>T	uc002oja.1	+	15	1898	c.1839C>T	c.(1837-1839)ACC>ACT	p.T613T	ACTN4_uc002ojb.1_5'Flank	NM_004924	NP_004915	O43707	ACTN4_HUMAN	actinin, alpha 4	613	Spectrin 3.				platelet activation|platelet degranulation|positive regulation of cellular component movement|positive regulation of sodium:hydrogen antiporter activity|protein transport|regulation of apoptosis	extracellular region|nucleolus|perinuclear region of cytoplasm|platelet alpha granule lumen|protein complex|pseudopodium|ribonucleoprotein complex	actin filament binding|calcium ion binding|integrin binding|nucleoside binding|protein homodimerization activity				0	all_cancers(60;1.57e-05)|Ovarian(47;0.103)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CCTACACCACCGTCACCCCGC	0.667000													6	20					0	0	1	0	0	
DYRK1B	9149	broad.mit.edu	37	19	40316498	40316498	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:40316498C>T	uc002omj.2	-	11	2027	c.1747G>A	c.(1747-1749)GCC>ACC	p.A583T	DYRK1B_uc002omi.2_Missense_Mutation_p.A555T|DYRK1B_uc002omk.2_Missense_Mutation_p.A543T	NM_004714	NP_004705	Q9Y463	DYR1B_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	583					positive regulation of transcription, DNA-dependent	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|transcription coactivator activity			ovary(4)|stomach(1)|central_nervous_system(1)|skin(1)	7	all_cancers(60;5.79e-06)|all_lung(34;5.2e-08)|Lung NSC(34;6.14e-08)|Ovarian(47;0.06)		Epithelial(26;5.74e-25)|OV - Ovarian serous cystadenocarcinoma(5;3.13e-24)|all cancers(26;8.59e-23)			TGCTGGGGGGCAGGCGCTGGG	0.697000													5	17					0	0	1	0	0	
FCGBP	8857	broad.mit.edu	37	19	40376631	40376631	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:40376631G>A	uc002omp.3	-	24	11799	c.11791C>T	c.(11791-11793)CCC>TCC	p.P3931S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	3931	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCTCACTCACGACAGAAAGTT	0.622000													18	66					0	0	1	0	0	
MAP3K10	4294	broad.mit.edu	37	19	40718828	40718828	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:40718828C>T	uc002ona.2	+	7	1957	c.1669C>T	c.(1669-1671)CGA>TGA	p.R557*	MAP3K10_uc002onb.2_Translation_Start_Site	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	557					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						GAAGAAGGGACGAACGTGGGG	0.562000													9	16					0	0	1	0	0	
CYP2B7P1	1556	broad.mit.edu	37	19	41442381	41442381	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:41442381G>A	uc010ehg.1	+	3	427	c.419G>A	c.(418-420)CGG>CAG	p.R140Q	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Missense_Mutation_p.R140Q|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						ATGGGAAAGCGGAGTGTGGAG	0.552000													4	18					0	0	1	0	0	
ARHGEF1	9138	broad.mit.edu	37	19	42399469	42399469	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:42399469T>C	uc002orx.2	+	12	1034	c.925T>C	c.(925-927)TCT>CCT	p.S309P	ARHGEF1_uc002orw.1_Missense_Mutation_p.S309P|ARHGEF1_uc002ory.2_Missense_Mutation_p.S276P|ARHGEF1_uc002orz.2_Missense_Mutation_p.S147P|ARHGEF1_uc002osa.2_Missense_Mutation_p.S324P|ARHGEF1_uc002osb.2_Missense_Mutation_p.S291P|ARHGEF1_uc002osc.2_Missense_Mutation_p.S3P|ARHGEF1_uc002osd.2_5'Flank	NM_004706	NP_004697	Q92888	ARHG1_HUMAN	Rho guanine nucleotide exchange factor 1 isoform	309					cell proliferation|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(3)|large_intestine(1)	4		Renal(1328;0.000518)|Hepatocellular(1079;0.0046)|Medulloblastoma(540;0.0425)		Epithelial(262;5.89e-46)|GBM - Glioblastoma multiforme(1328;2.49e-12)|STAD - Stomach adenocarcinoma(1328;0.00644)		GGGGATGCCCTCTCGGGACCG	0.602000													26	56					0	0	1	0	0	
POU2F2	5452	broad.mit.edu	37	19	42600366	42600366	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:42600366C>T	uc002osp.2	-	8	598	c.531G>A	c.(529-531)CCG>CCA	p.P177P	POU2F2_uc002osn.2_Intron|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Intron|POU2F2_uc002osr.1_Silent_p.P177P	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	177					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				GCGAGAGGTGCGGGTCGGGCA	0.687000													4	7					0	0	1	0	0	
DEDD2	162989	broad.mit.edu	37	19	42713928	42713928	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:42713928C>T	uc002osu.1	-	4	581	c.513G>A	c.(511-513)CGG>CGA	p.R171R	DEDD2_uc002osv.1_RNA|DEDD2_uc002osw.1_Silent_p.R166R|DEDD2_uc002osx.1_Missense_Mutation_p.G55D|DEDD2_uc002osy.1_Silent_p.R171R|DEDD2_uc010eid.2_RNA	NM_133328	NP_579874	Q8WXF8	DEDD2_HUMAN	death effector domain-containing  DNA binding	171	Bipartite nuclear localization signal (Potential).				activation of pro-apoptotic gene products|apoptotic nuclear change|cellular homeostasis|induction of apoptosis via death domain receptors|intracellular signal transduction|negative regulation of transcription, DNA-dependent|RNA processing|rRNA catabolic process|transcription, DNA-dependent	nucleolus	DNA binding|receptor signaling complex scaffold activity				0		Prostate(69;0.0704)				CCCCTCTCCGCCGCCGTCTGG	0.662000													13	35					0	0	1	0	0	
CIC	23152	broad.mit.edu	37	19	42796288	42796288	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:42796288G>A	uc002otf.1	+	12	2977	c.2937G>A	c.(2935-2937)CCG>CCA	p.P979P		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	979	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GCCTGGTGCCGCCCCTGAGCC	0.647000			T	DUX4	soft tissue sarcoma								12	39					0	0	1	0	0	
CEACAM8	1088	broad.mit.edu	37	19	43093693	43093693	+	Silent	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:43093693T>G	uc002oud.2	-	3	721	c.619A>C	c.(619-621)AGG>CGG	p.R207R	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	207	Ig-like C2-type 1.				immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				ACGTCATTCCTTGTGACACTG	0.512000													54	142					0	0	1	0	0	
PSG2	5670	broad.mit.edu	37	19	43575989	43575989	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:43575989T>C	uc002ovr.2	-	4	920	c.827A>G	c.(826-828)AAT>AGT	p.N276S	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.N276S|PSG2_uc010eiq.1_Missense_Mutation_p.N276S|PSG2_uc002ovs.3_Missense_Mutation_p.N276S|PSG2_uc002ovt.3_Missense_Mutation_p.N276S	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	276	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				AAACTTCCCATTAATTGTCCA	0.443000													19	270					0	0	1	0	0	
ZNF230	7773	broad.mit.edu	37	19	44515185	44515185	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:44515185G>A	uc002oyb.1	+	5	1245	c.994G>A	c.(994-996)GGA>AGA	p.G332R		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	332					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				AATTCACACAGGACAGAAACC	0.423000													58	146					0	0	1	0	0	
ZNF230	7773	broad.mit.edu	37	19	44515438	44515438	+	Missense_Mutation	SNP	G	A	A	rs149461366		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:44515438G>A	uc002oyb.1	+	5	1498	c.1247G>A	c.(1246-1248)CGG>CAG	p.R416Q		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	416					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				CTCCACTGCCGGAAAAAACCC	0.433000													40	91					0	0	1	0	0	
CEACAM20	125931	broad.mit.edu	37	19	45028150	45028150	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:45028150A>G	uc010ejn.1	-	3	357	c.341T>C	c.(340-342)ATG>ACG	p.M114T	CEACAM20_uc010ejo.1_Missense_Mutation_p.M114T|CEACAM20_uc010ejp.1_Missense_Mutation_p.M114T|CEACAM20_uc010ejq.1_Missense_Mutation_p.M114T	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	114	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GGACAGCTGCATGCGCTCATG	0.527000													3	11					0	0	1	0	0	
PPP5C	5536	broad.mit.edu	37	19	46887108	46887108	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:46887108C>T	uc002pem.2	+	6	831	c.771C>T	c.(769-771)AAC>AAT	p.N257N	PPP5C_uc010xya.1_Silent_p.N124N|PPP5C_uc002pen.2_Silent_p.N235N|PPP5C_uc010xyb.1_Silent_p.N115N	NM_006247	NP_006238	P53041	PPP5_HUMAN	protein phosphatase 5, catalytic subunit	257	Catalytic.				mitosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein dephosphorylation|transcription, DNA-dependent	Golgi apparatus|nucleus	metal ion binding|protein binding|protein serine/threonine phosphatase activity|signal transducer activity			lung(1)|pancreas(1)	2		Ovarian(192;0.0731)|all_neural(266;0.196)		OV - Ovarian serous cystadenocarcinoma(262;0.000196)|all cancers(93;0.00192)|GBM - Glioblastoma multiforme(486;0.0499)|Epithelial(262;0.0504)		TCGAGCTCAACGGTTTACCCT	0.562000													25	70					0	0	1	0	0	
PRKD2	25865	broad.mit.edu	37	19	47207633	47207633	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:47207633C>T	uc002pfh.2	-	6	1024	c.682G>A	c.(682-684)GAA>AAA	p.E228K	PRKD2_uc002pfg.2_Missense_Mutation_p.E71K|PRKD2_uc002pfi.2_Missense_Mutation_p.E228K|PRKD2_uc002pfj.2_Missense_Mutation_p.E228K|PRKD2_uc010xye.1_Missense_Mutation_p.E228K|PRKD2_uc002pfk.2_Missense_Mutation_p.E71K	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	228					cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		GGCAGGAGTTCGGTGGTGCTA	0.622000											OREG0025578	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	49					0	0	1	0	0	
GLTSCR1	29998	broad.mit.edu	37	19	48185372	48185372	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:48185372C>T	uc002phh.3	+	7	2440	c.2246C>T	c.(2245-2247)GCC>GTC	p.A749V	GLTSCR1_uc002phi.3_Missense_Mutation_p.A507V	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	749							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		GGCCCTCAGGCCCCCGACAGC	0.741000													3	3					0	0	1	0	0	
NUP62	23636	broad.mit.edu	37	19	50411973	50411973	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:50411973C>T	uc002pqx.2	-	2	1196	c.1092G>A	c.(1090-1092)ACG>ACA	p.T364T	IL4I1_uc002pqv.1_Intron|IL4I1_uc010eno.1_Intron|IL4I1_uc002pqw.1_Intron|IL4I1_uc002pqu.1_Intron|NUP62_uc002pqy.2_Silent_p.T364T|NUP62_uc002pqz.2_Silent_p.T364T|NUP62_uc002pra.2_Silent_p.T364T|NUP62_uc002prb.2_Silent_p.T364T|NUP62_uc002prc.2_Silent_p.T288T	NM_153719	NP_714941	P37198	NUP62_HUMAN	nucleoporin 62kDa	364	Potential.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding				0		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		TCTCGATCAGCGTGCGGTCCC	0.602000													25	81					0	0	1	0	0	
ZNF473	25888	broad.mit.edu	37	19	50542498	50542498	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:50542498G>A	uc002prn.2	+	3	327	c.90G>A	c.(88-90)ACG>ACA	p.T30T	ZNF473_uc002prm.2_Silent_p.T30T|ZNF473_uc010ybo.1_Silent_p.T18T	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	30	KRAB.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		AGGGGGACACGTTCTGGGACA	0.572000													27	76					0	0	1	0	0	
MYH14	79784	broad.mit.edu	37	19	50812898	50812898	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:50812898C>T	uc002prr.1	+	41	5886	c.5839C>T	c.(5839-5841)CGC>TGC	p.R1947C	MYH14_uc010enu.1_Missense_Mutation_p.R1988C|MYH14_uc002prq.1_Missense_Mutation_p.R1955C|MYH14_uc010ycb.1_Missense_Mutation_p.R298C|MYH14_uc002prs.1_Missense_Mutation_p.R298C	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1947	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		TCCCCACAGACGCGGCCCCCT	0.507000													3	9					0	0	1	0	0	
PPP2R1A	5518	broad.mit.edu	37	19	52714705	52714705	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:52714705T>A	uc002pyp.2	+	4	622	c.463T>A	c.(463-465)TAC>AAC	p.Y155N	PPP2R1A_uc010ydk.1_Missense_Mutation_p.Y100N|PPP2R1A_uc010epm.1_Missense_Mutation_p.Y195N|PPP2R1A_uc002pyq.2_5'UTR	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	155	PP2A subunit B binding.|SV40 small T antigen binding.|HEAT 4.|Polyoma small and medium T antigens Binding.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		CTCCGTCTGCTACCCCCGAGT	0.622000			Mis		clear cell ovarian carcinoma								36	64					0	0	1	0	0	
BIRC8	112401	broad.mit.edu	37	19	53792958	53792958	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:53792958T>C	uc002qbk.2	-	1	1918	c.670A>G	c.(670-672)AGC>GGC	p.S224G		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	224	RING-type.				apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		ATAACCGCGCTGCACATGGGA	0.398000													47	123					0	0	1	0	0	
MIR518E	574487	broad.mit.edu	37	19	54233099	54233099	+	RNA	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:54233099C>T	hsa-mir-518e|MI0003169	+			c.8C>T			MIR518A1_hsa-mir-518a-1|MI0003170_5'Flank																	0						AGATCTCAGGCTGTGACCCTC	0.438000													9	66					0	0	1	0	0	
CACNG7	59284	broad.mit.edu	37	19	54444823	54444823	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:54444823A>G	uc002qcr.1	+	4	539	c.524A>G	c.(523-525)TAC>TGC	p.Y175C	CACNG7_uc010era.1_Missense_Mutation_p.Y175C	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	175					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		CATTATCGCTACGGGTGGTCT	0.537000													32	83					0	0	1	0	0	
LILRB1	10859	broad.mit.edu	37	19	55143520	55143520	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:55143520C>A	uc002qgj.2	+	6	833	c.493C>A	c.(493-495)CCA>ACA	p.P165T	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.P165T|LILRB1_uc002qgk.2_Missense_Mutation_p.P165T|LILRB1_uc002qgm.2_Missense_Mutation_p.P165T|LILRB1_uc010erq.2_Missense_Mutation_p.P165T|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	165	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		AGATGAACACCCACAATGCCT	0.592000										HNSCC(37;0.09)			32	100					7.11191e-15	7.59349e-15	1	1	0	
NLRP2	55655	broad.mit.edu	37	19	55495082	55495082	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:55495082C>T	uc002qij.2	+	6	2102	c.2016C>T	c.(2014-2016)GAC>GAT	p.D672D	NLRP2_uc010yfp.1_Silent_p.D649D|NLRP2_uc010esn.2_Silent_p.D648D|NLRP2_uc010eso.2_Silent_p.D669D|NLRP2_uc010esp.2_Silent_p.D650D	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	672					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CTGAATCAGACGCCGAGGTTG	0.507000													19	44					0	0	1	0	0	
PPP1R12C	54776	broad.mit.edu	37	19	55614860	55614860	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:55614860G>A	uc002qix.2	-	4	664	c.648C>T	c.(646-648)GGC>GGT	p.G216G	PPP1R12C_uc010yfs.1_Silent_p.G142G|PPP1R12C_uc002qiy.2_Silent_p.G216G	NM_017607	NP_060077	Q9BZL4	PP12C_HUMAN	protein phosphatase 1, regulatory subunit 12C	216						cytoplasm				ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		CTGGCATGGCGCCCCCATTCA	0.622000													12	31					0	0	1	0	0	
SUV420H2	84787	broad.mit.edu	37	19	55858419	55858419	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:55858419C>T	uc002qkj.3	+	9	1239	c.991C>T	c.(991-993)CGG>TGG	p.R331W	SUV420H2_uc002qkl.2_Missense_Mutation_p.R216W	NM_032701	NP_116090	Q86Y97	SV422_HUMAN	suppressor of variegation 4-20 homolog 2	331					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding				0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GCCCCGAGTGCGGCCCCGGAA	0.771000													9	14					0	0	1	0	0	
ZNF524	147807	broad.mit.edu	37	19	56114133	56114133	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:56114133C>T	uc002qlk.1	+	2	738	c.655C>T	c.(655-657)CGC>TGC	p.R219C	FIZ1_uc002qlj.3_5'Flank	NM_153219	NP_694951	Q96C55	ZN524_HUMAN	zinc finger protein 524	219	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		CCATGCGAAGCGCAAGCACCC	0.706000													4	14					0	0	1	0	0	
NLRP8	126205	broad.mit.edu	37	19	56467067	56467067	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:56467067G>A	uc002qmh.2	+	3	1714	c.1643G>A	c.(1642-1644)AGC>AAC	p.S548N	NLRP8_uc010etg.2_Missense_Mutation_p.S548N	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	548						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CCCAGAGGAAGCAAAAGCTAT	0.473000													42	61					0	0	1	0	0	
ZNF71	58491	broad.mit.edu	37	19	57132704	57132704	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:57132704G>A	uc002qnm.3	+	3	287	c.49G>A	c.(49-51)GTT>ATT	p.V17I		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	17						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		CAAGCTCTCCGTTGTTGGGGA	0.542000													12	38					0	0	1	0	0	
PEG3	5178	broad.mit.edu	37	19	57326026	57326026	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:57326026C>A	uc002qnu.2	-	7	4135	c.3784G>T	c.(3784-3786)GCT>TCT	p.A1262S	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.A1233S|PEG3_uc002qnv.2_Missense_Mutation_p.A1262S|PEG3_uc002qnw.2_Missense_Mutation_p.A1138S|PEG3_uc002qnx.2_Missense_Mutation_p.A1136S|PEG3_uc010etr.2_Missense_Mutation_p.A1262S	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1262					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGAATGATAGCTTCCTCAGCC	0.468000													16	33					1.5739e-10	1.65447e-10	1	1	0	
AURKC	6795	broad.mit.edu	37	19	57743478	57743478	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:57743478G>T	uc002qoe.2	+	3	371	c.182G>T	c.(181-183)CGG>CTG	p.R61L	AURKC_uc002qoc.2_Missense_Mutation_p.R42L|AURKC_uc002qod.2_Missense_Mutation_p.R27L|AURKC_uc010etv.2_Missense_Mutation_p.R58L	NM_001015878	NP_001015878	Q9UQB9	AURKC_HUMAN	aurora kinase C isoform 1	61	Protein kinase.				cell cycle|cytokinesis	condensed chromosome|cytoplasm|midbody|spindle midzone	ATP binding|protein serine/threonine kinase activity			lung(4)|ovary(2)	6		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0122)		TACCTGGCTCGGCTCAAGGAA	0.537000													8	25					0.27861	0.278768	1	1	0	
C19orf18	147685	broad.mit.edu	37	19	58485726	58485726	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:58485726C>T	uc002qqv.2	-	1	179	c.75G>A	c.(73-75)CCG>CCA	p.P25P		NM_152474	NP_689687	Q8NEA5	CS018_HUMAN	hypothetical protein LOC147685 precursor	25						integral to membrane				ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)		CATCTGCATACGGCAAGCATA	0.393000													24	35					0	0	1	0	0	
PXDN	7837	broad.mit.edu	37	2	1652304	1652304	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:1652304C>T	uc002qxa.2	-	17	3312	c.3248G>A	c.(3247-3249)CGG>CAG	p.R1083Q		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1083					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CTCGTCCAGCCGGTAAAGCAG	0.577000													10	23					0	0	1	0	0	
RNASEH1	246243	broad.mit.edu	37	2	3604479	3604479	+	Silent	SNP	T	C	C	rs76089149		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:3604479T>C	uc002qxt.2	-	2	234	c.144A>G	c.(142-144)GCA>GCG	p.A48A	RNASEH1_uc002qxs.2_5'UTR|uc002qxu.2_5'Flank|uc002qxv.2_5'Flank	NM_002936	NP_002927	O60930	RNH1_HUMAN	ribonuclease H1	48					RNA catabolic process	cytoplasm	magnesium ion binding|ribonuclease H activity|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0713)|Epithelial(75;0.167)|all cancers(51;0.22)		GGTCCACCTGTGCTCTGCACT	0.438000													12	35					0	0	1	0	0	
CMPK2	129607	broad.mit.edu	37	2	7001506	7001506	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:7001506C>T	uc002qyo.2	-	3	910	c.801G>A	c.(799-801)ACG>ACA	p.T267T	CMPK2_uc010yis.1_Silent_p.T267T|CMPK2_uc010ewv.2_Silent_p.T267T	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	267					dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					ACTGGGTCACCGTGGTTTTAC	0.448000													8	19					0	0	1	0	0	
RNF144A	9781	broad.mit.edu	37	2	7179767	7179767	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:7179767G>A	uc002qys.2	+	9	1197	c.755G>A	c.(754-756)GGC>GAC	p.G252D	RNF144A_uc002qyt.2_Missense_Mutation_p.G101D	NM_014746	NP_055561	P50876	R144A_HUMAN	ring finger protein 144	252	Helical; (Potential).					Golgi apparatus|integral to membrane	ligase activity|zinc ion binding			ovary(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;0.226)		OV - Ovarian serous cystadenocarcinoma(76;0.195)		CAGGTTGTGGGCATTTTTGCA	0.483000													36	96					0	0	1	0	0	
ATP6V1C2	245973	broad.mit.edu	37	2	10908853	10908853	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:10908853G>A	uc002ras.2	+	6	496	c.387G>A	c.(385-387)GCG>GCA	p.A129A	ATP6V1C2_uc002rat.2_Silent_p.A129A	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	129					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		AGCAACTGGCGCAGATCGAGA	0.498000													13	33					0	0	1	0	0	
GREB1	9687	broad.mit.edu	37	2	11750856	11750856	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:11750856C>T	uc002rbk.1	+	18	3009	c.2709C>T	c.(2707-2709)CTC>CTT	p.L903L	GREB1_uc002rbo.1_Silent_p.L537L|GREB1_uc002rbp.1_5'Flank	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	903						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CCTTTGTTCTCGTGCAGCACT	0.637000													17	40					0	0	1	0	0	
MSGN1	343930	broad.mit.edu	37	2	17997882	17997882	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:17997882G>A	uc010yjt.1	+	1	97	c.97G>A	c.(97-99)GCA>ACA	p.A33T		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	33					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GAAGGACAGGGCAGGGCCCTT	0.612000													18	41					0	0	1	0	0	
HS1BP3	64342	broad.mit.edu	37	2	20845118	20845118	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:20845118C>A	uc002rdw.1	-	2	221	c.180G>T	c.(178-180)GAG>GAT	p.E60D	HS1BP3_uc002rdx.2_Missense_Mutation_p.E60D|HS1BP3_uc002rdy.2_Missense_Mutation_p.E60D	NM_022460	NP_071905	Q53T59	H1BP3_HUMAN	HCLS1 binding protein 3	60	PX.				cell communication		phosphatidylinositol binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGACGACATCCTCGGGCCTGT	0.632000													15	45					3.27435e-08	3.40147e-08	1	1	0	
EPT1	85465	broad.mit.edu	37	2	26597961	26597961	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:26597961T>C	uc010ykz.1	+	6	774	c.627T>C	c.(625-627)TAT>TAC	p.Y209Y	EPT1_uc010eyl.1_RNA	NM_033505	NP_277040	Q9C0D9	EPT1_HUMAN	selenoprotein I	209					phospholipid biosynthetic process	integral to membrane	ethanolaminephosphotransferase activity|metal ion binding				0						AGGCCTGGTATGAACCTTTCC	0.378000													48	116					0	0	1	0	0	
KCNK3	3777	broad.mit.edu	37	2	26950927	26950927	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:26950927G>A	uc002rhn.2	+	2	839	c.676G>A	c.(676-678)GTC>ATC	p.V226I		NM_002246	NP_002237	O14649	KCNK3_HUMAN	potassium channel, subfamily K, member 3	226	Helical; (Potential).				synaptic transmission	integral to plasma membrane				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTTCAGCTTCGTCTACATCCT	0.632000													8	18					0	0	1	0	0	
SLC5A6	8884	broad.mit.edu	37	2	27424662	27424662	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:27424662G>A	uc002rjd.2	-	14	1807	c.1416C>T	c.(1414-1416)ATC>ATT	p.I472I	SLC5A6_uc010eyv.1_Silent_p.I472I	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	472	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	CGATGCTCCCGATGCCAATCC	0.617000													16	23					0	0	1	0	0	
IFT172	26160	broad.mit.edu	37	2	27683894	27683894	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:27683894C>T	uc002rku.2	-	23	2560	c.2509G>A	c.(2509-2511)GCA>ACA	p.A837T		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	837	TPR 3.				cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TTCATGAATGCGTTGCCTTTA	0.428000													42	102					0	0	1	0	0	
ZNF512	84450	broad.mit.edu	37	2	27821012	27821012	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:27821012G>A	uc002rla.2	+	3	255	c.168G>A	c.(166-168)TCG>TCA	p.S56S	ZNF512_uc010ylv.1_5'UTR|ZNF512_uc010ylw.1_Silent_p.S55S|ZNF512_uc002rlb.2_5'UTR|ZNF512_uc010ylx.1_5'UTR|ZNF512_uc002rlc.2_5'UTR|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_5'UTR	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	56					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GTGGTTCATCGTCTGCATCTT	0.408000													33	75					0	0	1	0	0	
CLIP4	79745	broad.mit.edu	37	2	29358489	29358489	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:29358489C>T	uc002rmv.2	+	6	844	c.605C>T	c.(604-606)GCT>GTT	p.A202V	CLIP4_uc002rmu.2_Missense_Mutation_p.A202V|CLIP4_uc010ezm.1_Missense_Mutation_p.A202V|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.A184V	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	202	ANK 3.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGTGCAGGTGCTGTGAAGTGC	0.353000													19	41					0	0	1	0	0	
ALK	238	broad.mit.edu	37	2	29446357	29446357	+	Silent	SNP	C	T	T	rs138178848		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:29446357C>T	uc002rmy.2	-	20	4117	c.3210G>A	c.(3208-3210)CAG>CAA	p.Q1070Q	ALK_uc010ymo.1_Silent_p.Q2Q	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1070	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GCAGCTCCATCTGCATGGCTT	0.597000			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				7	18					0	0	1	0	0	
LCLAT1	253558	broad.mit.edu	37	2	30682532	30682532	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:30682532C>T	uc002rnj.2	+	2	263	c.54C>T	c.(52-54)AAC>AAT	p.N18N	LCLAT1_uc010ymp.1_Intron|LCLAT1_uc002rnk.1_Silent_p.N18N|LCLAT1_uc002rnl.2_Intron|LCLAT1_uc010ymq.1_Translation_Start_Site	NM_182551	NP_872357	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1 isoform 1	18					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			ovary(2)	2						GGTCAATTAACGAGGCAGTTT	0.428000													44	137					0	0	1	0	0	
NLRC4	58484	broad.mit.edu	37	2	32476259	32476259	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:32476259C>T	uc002roi.2	-	4	920	c.674G>A	c.(673-675)GGC>GAC	p.G225D	NLRC4_uc002roj.1_Missense_Mutation_p.G225D|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	225	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					CCTGATTGTGCCAGGTATATC	0.502000													25	50					0	0	1	0	0	
LTBP1	4052	broad.mit.edu	37	2	33359928	33359928	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:33359928G>A	uc002ros.2	+	5	1102	c.1102G>A	c.(1102-1104)GGC>AGC	p.G368S	LTBP1_uc002rot.2_Missense_Mutation_p.G42S|LTBP1_uc002rou.2_Missense_Mutation_p.G42S|LTBP1_uc002rov.2_Missense_Mutation_p.G42S|LTBP1_uc010ymz.1_Missense_Mutation_p.G42S|LTBP1_uc010yna.1_Missense_Mutation_p.G42S	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	368					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CTGCACCAAGGGCAGCTGTCA	0.547000													29	36					0	0	1	0	0	
LTBP1	4052	broad.mit.edu	37	2	33488371	33488371	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:33488371A>G	uc002ros.2	+	15	2532	c.2532A>G	c.(2530-2532)GAA>GAG	p.E844E	LTBP1_uc002rot.2_Silent_p.E518E|LTBP1_uc002rou.2_Silent_p.E517E|LTBP1_uc002rov.2_Silent_p.E464E|LTBP1_uc010ymz.1_Silent_p.E517E|LTBP1_uc010yna.1_Silent_p.E464E	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	843					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TAGTGATTGAAAAAACATCAC	0.413000													33	92					0	0	1	0	0	
HEATR5B	54497	broad.mit.edu	37	2	37297376	37297376	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:37297376C>T	uc002rpp.1	-	7	1020	c.924G>A	c.(922-924)ACG>ACA	p.T308T		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	308							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TACAAACCTGCGTAACTCCAA	0.294000													49	120					0	0	1	0	0	
SRBD1	55133	broad.mit.edu	37	2	45778293	45778293	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:45778293C>G	uc002rus.2	-	12	1722	c.1646G>C	c.(1645-1647)GGT>GCT	p.G549A	SRBD1_uc010yoc.1_Missense_Mutation_p.G68A	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	549					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			TAATTTGCAACCATGTTTATA	0.388000													8	30					0	0	1	0	0	
SRBD1	55133	broad.mit.edu	37	2	45801772	45801772	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:45801772C>T	uc002rus.2	-	8	1239	c.1163G>A	c.(1162-1164)CGG>CAG	p.R388Q		NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	388					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			TCACAAGTTCCGAATGAAGTC	0.378000													23	84					0	0	1	0	0	
EPAS1	2034	broad.mit.edu	37	2	46607459	46607459	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:46607459C>T	uc002ruv.2	+	12	2136	c.1648C>T	c.(1648-1650)CGG>TGG	p.R550W	EPAS1_uc002ruw.2_Missense_Mutation_p.R16W	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	550					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			CCCCGAGGAGCGGCTCTTGGC	0.602000													21	62					0	0	1	0	0	
FSHR	2492	broad.mit.edu	37	2	49216165	49216165	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:49216165T>A	uc002rww.2	-	6	549	c.475A>T	c.(475-477)ACA>TCA	p.T159S	FSHR_uc002rwx.2_Missense_Mutation_p.T159S|FSHR_uc010fbn.2_Intron|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	159	LRR 5.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	CTTTCAATTGTGTGGATGTTT	0.328000									Gonadal_Dysgenesis_46_XX				10	20					0	0	1	0	0	
PSME4	23198	broad.mit.edu	37	2	54128645	54128645	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:54128645G>T	uc002rxp.2	-	28	3183	c.3127C>A	c.(3127-3129)CTT>ATT	p.L1043I	PSME4_uc010yop.1_Missense_Mutation_p.L929I|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.L418I|PSME4_uc010fbv.1_Missense_Mutation_p.L187I	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1043					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			CAATCATGAAGGTTTGCCAAG	0.428000													15	101					1.02788e-11	1.08632e-11	1	1	0	
USP34	9736	broad.mit.edu	37	2	61508272	61508272	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:61508272T>C	uc002sbe.2	-	38	5126	c.5104A>G	c.(5104-5106)ACA>GCA	p.T1702A	USP34_uc002sbf.2_5'Flank	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1702					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TTCAATAATGTTGAGGCAGCC	0.393000													14	19					0	0	1	0	0	
USP34	9736	broad.mit.edu	37	2	61515896	61515896	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:61515896G>A	uc002sbe.2	-	34	4687	c.4665C>T	c.(4663-4665)AGC>AGT	p.S1555S		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1555					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TTTTCCTATGGCTTTCCGCTA	0.433000													34	75					0	0	1	0	0	
APLF	200558	broad.mit.edu	37	2	68765314	68765314	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:68765314A>G	uc002sep.2	+	7	1288	c.1115A>G	c.(1114-1116)AAC>AGC	p.N372S	APLF_uc002seq.1_RNA|APLF_uc010fdf.2_Missense_Mutation_p.N348S|APLF_uc002ser.1_Missense_Mutation_p.N103S	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	372					double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						TCTGAAGGAAACAAGGTCAAG	0.403000													21	44					0	0	1	0	0	
SNRNP27	11017	broad.mit.edu	37	2	70131385	70131385	+	Splice_Site	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:70131385G>A	uc002sfw.2	+	6	441	c.414_splice	c.e6-1	p.R138_splice	SNRNP27_uc002sfv.2_Splice_Site|SNRNP27_uc002sfx.2_Splice_Site_p.A117_splice	NM_006857	NP_006848	Q8WVK2	SNR27_HUMAN	small nuclear ribonucleoprotein 27kDa						mRNA processing|RNA splicing	nucleus	nucleic acid binding				0						TCTCATCATAGGCAGTACATG	0.318000													29	60					0	0	1	0	0	
MXD1	4084	broad.mit.edu	37	2	70164405	70164405	+	Silent	SNP	C	T	T	rs141349752	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:70164405C>T	uc002sfy.2	+	5	617	c.357C>T	c.(355-357)ATC>ATT	p.I119I	MXD1_uc010yqp.1_Silent_p.I119I|MXD1_uc010yqq.1_Silent_p.I56I|MXD1_uc010yqr.1_RNA|MXD1_uc010yqs.1_Silent_p.I109I	NM_002357	NP_002348	Q05195	MAD1_HUMAN	MAX dimerization protein 1	119					cell proliferation|multicellular organismal development	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						TTCACCAAATCGACCAGCTTC	0.557000													36	66					0	0	1	0	0	
ZNF638	27332	broad.mit.edu	37	2	71633328	71633328	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:71633328T>C	uc002shx.2	+	19	3390	c.3071T>C	c.(3070-3072)GTA>GCA	p.V1024A	ZNF638_uc010yqw.1_Missense_Mutation_p.V603A|ZNF638_uc002shy.2_Missense_Mutation_p.V1024A|ZNF638_uc002shz.2_Missense_Mutation_p.V1024A|ZNF638_uc002sia.2_Missense_Mutation_p.V1024A|ZNF638_uc002sib.1_Missense_Mutation_p.V1024A|ZNF638_uc010fed.2_RNA|ZNF638_uc002sic.2_Missense_Mutation_p.V121A	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	1024					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						CTTCAGTGTGTACTTTGTGTT	0.338000													26	65					0	0	1	0	0	
INO80B	83444	broad.mit.edu	37	2	74683252	74683252	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:74683252C>A	uc002slg.2	+	4	438	c.393C>A	c.(391-393)CCC>CCA	p.P131P	INO80B_uc002slf.1_Silent_p.P118P|INO80B_uc010yrr.1_Intron|WBP1_uc002slh.1_RNA|INO80B_uc002sli.1_RNA|INO80B_uc010yrs.1_Silent_p.P149P|WBP1_uc002slj.1_5'Flank|WBP1_uc002slk.1_5'Flank|WBP1_uc002sll.1_5'Flank	NM_031288	NP_112578	Q9C086	IN80B_HUMAN	high mobility group AT-hook 1-like 4	131					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex|nucleolus	metal ion binding|protein binding			pancreas(1)	1						ATCTCTCTCCCTCTCCACTTC	0.512000													15	30					1.49906e-05	1.53202e-05	1	1	0	
IMMT	10989	broad.mit.edu	37	2	86386713	86386713	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:86386713A>G	uc002sqz.3	-	9	1366	c.978T>C	c.(976-978)GCT>GCC	p.A326A	IMMT_uc002sqy.3_Silent_p.A67A|IMMT_uc002srb.3_Silent_p.A315A|IMMT_uc002sra.3_Silent_p.A325A|IMMT_uc010ytd.1_Silent_p.A314A|IMMT_uc010yte.1_Silent_p.A279A|IMMT_uc002src.1_Silent_p.A67A|IMMT_uc002srd.2_Silent_p.A326A|IMMT_uc002sre.3_Silent_p.A314A|IMMT_uc010ytf.1_Silent_p.A248A|IMMT_uc010fgs.1_Silent_p.A323A	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	326	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						TACCCTCTGCAGCAGTTATAT	0.338000													11	24					0	0	1	0	0	
THNSL2	55258	broad.mit.edu	37	2	88474159	88474159	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:88474159T>C	uc002ssz.3	+	3	378	c.225T>C	c.(223-225)GAT>GAC	p.D75D	THNSL2_uc002ssv.2_RNA|THNSL2_uc002ssw.3_Silent_p.D75D|THNSL2_uc002ssx.3_Silent_p.D43D|THNSL2_uc002sta.3_Intron|THNSL2_uc002ssy.3_Silent_p.D75D|THNSL2_uc010fhe.2_5'UTR	NM_018271	NP_060741	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2	75					threonine biosynthetic process		threonine synthase activity			ovary(1)	1						CCCTCACAGATCTGATCGACC	0.517000													15	45					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	89292168	89292168	+	RNA	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:89292168T>C	uc010ytr.1	-	82		c.7038A>G			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CTCTGTCTCCTGTAGATGCAG	0.463000													47	132					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	89459260	89459260	+	RNA	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:89459260T>C	uc010ytr.1	-	29		c.3934A>G			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CTGATGACAGTAATACGTTGC	0.478000													43	105					0	0	1	0	0	
MRPS5	64969	broad.mit.edu	37	2	95766226	95766226	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:95766226T>C	uc002sub.2	-	10	1142	c.924A>G	c.(922-924)CAA>CAG	p.Q308Q	MRPS5_uc002suc.2_RNA	NM_031902	NP_114108	P82675	RT05_HUMAN	mitochondrial ribosomal protein S5	308					translation	mitochondrion|ribosome	protein binding|RNA binding|structural constituent of ribosome			ovary(2)|central_nervous_system(1)	3						TACCTTTGGGTTGTTTCTTCA	0.323000													8	31					0	0	1	0	0	
ADRA2B	151	broad.mit.edu	37	2	96780880	96780880	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:96780880G>A	uc002svi.2	-	3	1018	c.1018C>T	c.(1018-1020)CGT>TGT	p.R340C		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	340	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	ACCTGGCCACGTAGGGTGGCC	0.662000													7	1					0	0	1	0	0	
ANKRD36	375248	broad.mit.edu	37	2	97866080	97866080	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:97866080G>A	uc010yva.1	+	45	3009	c.2765G>A	c.(2764-2766)CGG>CAG	p.R922Q	ANKRD36_uc002sxo.2_Missense_Mutation_p.R338Q|ANKRD36_uc002sxp.3_RNA|ANKRD36_uc002sxq.1_RNA	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	922											0						GTGTCTTCTCGGAAAAAACCA	0.338000													5	53					0	0	1	0	0	
ZAP70	7535	broad.mit.edu	37	2	98349407	98349407	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:98349407T>C	uc002syd.1	+	5	832	c.625T>C	c.(625-627)TAC>CAC	p.Y209H	ZAP70_uc010yvf.1_Missense_Mutation_p.Y209H|ZAP70_uc002sye.1_Missense_Mutation_p.Y99H|ZAP70_uc002syf.1_5'Flank	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	209	SH2 2.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						GAAGACGGTGTACCACTACCT	0.602000													9	28					0	0	1	0	0	
TMEM131	23505	broad.mit.edu	37	2	98377288	98377288	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:98377288G>T	uc002syh.3	-	37	5208	c.4979C>A	c.(4978-4980)GCT>GAT	p.A1660D	TMEM131_uc002syg.2_Missense_Mutation_p.A40D	NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1660						integral to membrane				ovary(4)|central_nervous_system(2)	6						CGTGACTGCAGCAAAAGTGGG	0.542000													18	47					2.35188e-11	2.48114e-11	1	1	0	
INPP4A	3631	broad.mit.edu	37	2	99170738	99170738	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:99170738G>T	uc002syy.2	+	16	1760	c.1367G>T	c.(1366-1368)CGG>CTG	p.R456L	INPP4A_uc010yvj.1_Missense_Mutation_p.R456L|INPP4A_uc010yvk.1_Missense_Mutation_p.R456L|INPP4A_uc002syx.2_Missense_Mutation_p.R451L|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	456					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						CTGCAGACACGGCAGCTGGTC	0.612000													3	3					0.004672	0.00470665	1	1	0	
CHST10	9486	broad.mit.edu	37	2	101009849	101009849	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:101009849G>A	uc002tam.2	-	7	1288	c.929C>T	c.(928-930)CCG>CTG	p.P310L		NM_004854	NP_004845	O43529	CHSTA_HUMAN	HNK-1 sulfotransferase	310	Lumenal (Potential).				carbohydrate biosynthetic process|cell adhesion	Golgi membrane|integral to membrane|membrane fraction				ovary(1)	1						GGTAATGCCCGGAGGGATAGT	0.527000													19	57					0	0	1	0	0	
RNF149	284996	broad.mit.edu	37	2	101924856	101924856	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:101924856G>A	uc002taz.1	-	1	297	c.195C>T	c.(193-195)GGC>GGT	p.G65G	RNF149_uc002tax.1_RNA	NM_173647	NP_775918	Q8NC42	RN149_HUMAN	ring finger protein 149 precursor	65						integral to membrane	ligase activity|zinc ion binding			ovary(1)|breast(1)	2						GCGAGCTGTCGCCGAAGCGGC	0.672000													8	25					0	0	1	0	0	
GPR45	11250	broad.mit.edu	37	2	105858508	105858508	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:105858508A>G	uc002tco.1	+	1	309	c.193A>G	c.(193-195)ATG>GTG	p.M65V		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	65	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						GAGGCCGGCTATGCGCTCGGC	0.612000													37	76					0	0	1	0	0	
GPR45	11250	broad.mit.edu	37	2	105859310	105859310	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:105859310G>A	uc002tco.1	+	1	1111	c.995G>A	c.(994-996)CGC>CAC	p.R332H		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	332	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						AAAAAATTCCGCGAGGCCTGC	0.557000													34	61					0	0	1	0	0	
RANBP2	5903	broad.mit.edu	37	2	109389034	109389034	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:109389034G>A	uc002tem.3	+	22	8236	c.8110G>A	c.(8110-8112)GCA>ACA	p.A2704T		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2704	Required for E3 SUMO-ligase activity.|Interaction with SUMO1.|2 X 50 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AGAAAATACAGCAGGTATGTT	0.299000													22	37					0	0	1	0	0	
IL1F10	84639	broad.mit.edu	37	2	113832828	113832828	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:113832828G>A	uc002tiu.2	+	5	421	c.346G>A	c.(346-348)GCC>ACC	p.A116T	IL1F10_uc002tiv.2_Missense_Mutation_p.A116T|IL1F10_uc002tiw.2_Missense_Mutation_p.A108T	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	116						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						TGAGGCTGCTGCCTGGCCTGG	0.582000													14	128					0	0	1	0	0	
INHBB	3625	broad.mit.edu	37	2	121104098	121104098	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:121104098G>A	uc002tmn.2	+	1	380	c.334G>A	c.(334-336)GCG>ACG	p.A112T		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	112					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				CAAGCTGCACGCGGGCAAGGT	0.711000													4	3					0	0	1	0	0	
CNTNAP5	129684	broad.mit.edu	37	2	125504943	125504943	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:125504943G>A	uc002tno.2	+	14	2576	c.2212G>A	c.(2212-2214)GAC>AAC	p.D738N	CNTNAP5_uc010flu.2_Missense_Mutation_p.D739N	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	738	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TTGCAATTGCGACGCTGACAA	0.478000													36	97					0	0	1	0	0	
ERCC3	2071	broad.mit.edu	37	2	128044555	128044555	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:128044555T>C	uc002toh.1	-	8	1161	c.1066A>G	c.(1066-1068)ACT>GCT	p.T356A	ERCC3_uc002toe.1_Missense_Mutation_p.T111A|ERCC3_uc002tof.1_Missense_Mutation_p.T292A|ERCC3_uc002tog.1_Missense_Mutation_p.T292A|ERCC3_uc010flx.1_Missense_Mutation_p.T111A	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	356	Helicase ATP-binding.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TTTCTGACAGTGCATGCAGCA	0.527000			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				23	33					0	0	1	0	0	
WDR33	55339	broad.mit.edu	37	2	128471514	128471514	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:128471514C>A	uc002tpg.1	-	18	3134	c.2951G>T	c.(2950-2952)GGG>GTG	p.G984V		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	984					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CCTCTCGGGCCCATGCTCAGG	0.642000													24	52					2.70639e-06	2.78525e-06	1	1	0	
POTEE	445582	broad.mit.edu	37	2	132021676	132021676	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:132021676G>A	uc002tsn.2	+	15	2700	c.2648G>A	c.(2647-2649)CGG>CAG	p.R883Q	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.R483Q|POTEE_uc002tsl.2_Missense_Mutation_p.R465Q|POTEE_uc010fmy.1_Missense_Mutation_p.R347Q	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	883	Actin-like.						ATP binding				0						CTGGCTGGGCGGGAACTGCCT	0.602000													32	83					0	0	1	0	0	
TUBA3D	113457	broad.mit.edu	37	2	132238309	132238309	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:132238309C>T	uc002tsu.3	+	4	1150	c.1043C>T	c.(1042-1044)CCG>CTG	p.P348L		NM_080386	NP_525125	Q13748	TBA3C_HUMAN	tubulin, alpha 3d	348					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(221;0.13)		GATTGGTGCCCGACTGGATTT	0.552000													29	43					0	0	1	0	0	
LCT	3938	broad.mit.edu	37	2	136567017	136567017	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:136567017C>T	uc002tuu.1	-	8	2911	c.2900G>A	c.(2899-2901)CGA>CAA	p.R967Q		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	967	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CTTCAAAGCTCGGAGCATATT	0.493000													24	52					0	0	1	0	0	
THSD7B	80731	broad.mit.edu	37	2	137990635	137990635	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:137990635T>C	uc002tva.1	+	8	1989	c.1989T>C	c.(1987-1989)TGT>TGC	p.C663C	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.C553C	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AAGCCACGTGTGGTGTAGGCA	0.478000													13	19					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141079561	141079561	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:141079561T>C	uc002tvj.1	-	82	13583	c.12611A>G	c.(12610-12612)AAT>AGT	p.N4204S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4204	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCAGGTGCCATTAATCAAATA	0.383000										TSP Lung(27;0.18)			19	43					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141457908	141457908	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:141457908C>T	uc002tvj.1	-	41	7682	c.6710G>A	c.(6709-6711)GGT>GAT	p.G2237D		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2237	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCGGTTGGTACCTTTTCTTCT	0.348000										TSP Lung(27;0.18)			34	82					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141609279	141609279	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:141609279A>T	uc002tvj.1	-	28	5625	c.4653T>A	c.(4651-4653)AGT>AGA	p.S1551R	LRP1B_uc010fnl.1_Missense_Mutation_p.S733R	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1551	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CACAGGCAGCACTCCTATTGT	0.413000										TSP Lung(27;0.18)			11	81					0	0	1	0	0	
KYNU	8942	broad.mit.edu	37	2	143685243	143685243	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:143685243T>C	uc002tvl.2	+	4	436	c.306T>C	c.(304-306)CAT>CAC	p.H102H	KYNU_uc002tvk.2_Silent_p.H102H|KYNU_uc010fnm.2_Silent_p.H102H	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	102					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	CCTATGGTCATGAAGTGGGGA	0.368000													34	66					0	0	1	0	0	
GTDC1	79712	broad.mit.edu	37	2	144903180	144903180	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:144903180C>T	uc002tvp.2	-	5	585	c.306G>A	c.(304-306)CAG>CAA	p.Q102Q	GTDC1_uc002tvo.2_Silent_p.Q102Q|GTDC1_uc002tvq.2_Silent_p.Q102Q|GTDC1_uc002tvr.2_Silent_p.Q102Q|GTDC1_uc010fnn.2_Silent_p.Q102Q|GTDC1_uc002tvs.2_Silent_p.Q70Q|GTDC1_uc010fno.2_5'UTR|GTDC1_uc002tvt.1_Silent_p.Q102Q	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	102					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		AATCCCTCTCCTGACATTTCT	0.413000													13	48					0	0	1	0	0	
NEB	4703	broad.mit.edu	37	2	152500609	152500609	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:152500609C>T	uc010fnx.2	-	57	7870	c.7679G>A	c.(7678-7680)GGC>GAC	p.G2560D		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2560					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AATGTGGTGGCCGAGCTGCTT	0.448000													80	246					0	0	1	0	0	
NR4A2	4929	broad.mit.edu	37	2	157182695	157182695	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:157182695A>G	uc002tyz.3	-	7	1929	c.1507T>C	c.(1507-1509)TTC>CTC	p.F503L	NR4A2_uc002tyx.3_Missense_Mutation_p.F440L|NR4A2_uc010zcf.1_Missense_Mutation_p.F503L|NR4A2_uc010zcg.1_3'UTR	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	503					cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						ATGCAGGAGAAGGCAGAAATG	0.517000													18	26					0	0	1	0	0	
KCNH7	90134	broad.mit.edu	37	2	163228392	163228392	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:163228392C>A	uc002uch.1	-	16	3750	c.3538G>T	c.(3538-3540)GGA>TGA	p.G1180*		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	1180	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CCCACGATTCCTACAGTGCTT	0.408000													18	33					3.52763e-06	3.62198e-06	1	1	0	
SCN3A	6328	broad.mit.edu	37	2	165946887	165946887	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:165946887T>A	uc002ucx.2	-	28	6268	c.5776A>T	c.(5776-5778)AAC>TAC	p.N1926Y	SCN3A_uc010zcy.1_Missense_Mutation_p.N409Y|SCN3A_uc002ucy.2_Missense_Mutation_p.N1877Y|SCN3A_uc002ucz.2_Missense_Mutation_p.N1877Y	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1926	IQ.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTGTTATAGTTACTTGATATA	0.338000													14	25					0	0	1	0	0	
SCN2A	6326	broad.mit.edu	37	2	166171996	166171996	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:166171996G>A	uc002udc.2	+	11	1689	c.1399G>A	c.(1399-1401)GCA>ACA	p.A467T	SCN2A_uc002udd.2_Missense_Mutation_p.A467T|SCN2A_uc002ude.2_Missense_Mutation_p.A467T	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	467					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AGCTGCAGCCGCATCTGCTGA	0.408000													21	51					0	0	1	0	0	
SCN9A	6335	broad.mit.edu	37	2	167168191	167168191	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:167168191G>A	uc010fpl.2	-	2	417	c.76C>T	c.(76-78)CGC>TGC	p.R26C		NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	26						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCAGCAATGCGTTGTTCAATG	0.428000													29	55					0	0	1	0	0	
ABCB11	8647	broad.mit.edu	37	2	169836427	169836427	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:169836427G>A	uc002ueo.1	-	11	1272	c.1146C>T	c.(1144-1146)GCC>GCT	p.A382A		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	382	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CAGTTGCAAAGGCTTCCAAAC	0.438000													10	18					0	0	1	0	0	
PPIG	9360	broad.mit.edu	37	2	170493494	170493494	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:170493494C>T	uc002uez.2	+	14	1946	c.1726C>T	c.(1726-1728)CGA>TGA	p.R576*	PPIG_uc010fpx.2_Nonsense_Mutation_p.R561*|PPIG_uc010fpy.2_Nonsense_Mutation_p.R569*|PPIG_uc002ufb.2_Nonsense_Mutation_p.R576*|PPIG_uc002ufd.2_Nonsense_Mutation_p.R573*	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	576	Arg/Ser-rich (RS domain).				protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	CAGAAGAGTGCGATCAAGAAC	0.448000													11	22					0	0	1	0	0	
HOXD1	3231	broad.mit.edu	37	2	177053943	177053943	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:177053943C>T	uc002ukv.3	+	1	637	c.414C>T	c.(412-414)GCC>GCT	p.A138A	HOXD1_uc010fqy.2_Silent_p.A138A|HOXD1_uc010zez.1_Silent_p.A138A	NM_024501	NP_078777	Q9GZZ0	HXD1_HUMAN	homeobox D1	138						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.0226)		CCACCTCGGCCGTCTTCTCGG	0.706000													5	3					0	0	1	0	0	
TTC30B	150737	broad.mit.edu	37	2	178416457	178416457	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:178416457T>G	uc002uln.2	-	1	1068	c.1035A>C	c.(1033-1035)GAA>GAC	p.E345D	TTC30B_uc010zfc.1_Missense_Mutation_p.E117D	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	345					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			AATGGGCATTTTCTGCCAGGA	0.453000													6	122					0	0	1	0	0	
DFNB59	494513	broad.mit.edu	37	2	179320767	179320767	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:179320767T>C	uc002umi.3	+	4	794	c.438T>C	c.(436-438)CGT>CGC	p.R146R	DFNB59_uc002umj.3_Silent_p.R146R	NM_001042702	NP_001036167	Q0ZLH3	PJVK_HUMAN	deafness, autosomal recessive 59	146					sensory perception of sound						0			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			GCTTGATACGTCAGTCAAGGA	0.403000													4	23					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179407141	179407141	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:179407141G>A	uc010zfg.1	-	298	89862	c.89638C>T	c.(89638-89640)CTG>TTG	p.L29880L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L23575L|TTN_uc010zfi.1_Silent_p.L23508L|TTN_uc010zfj.1_Silent_p.L23383L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30807							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAACGGGCAGCCATCCTGGA	0.498000													7	26					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179612351	179612351	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:179612351G>T	uc002unb.2	-	46	15000	c.14776C>A	c.(14776-14778)CAG>AAG	p.Q4926K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCTTTGCCTGGTCTCTGGTG	0.443000													29	78					3.73988e-18	4.02476e-18	1	1	0	
CERKL	375298	broad.mit.edu	37	2	182468728	182468728	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:182468728C>T	uc002unx.2	-	2	418	c.317G>A	c.(316-318)CGT>CAT	p.R106H	CERKL_uc002uny.2_Missense_Mutation_p.R106H|CERKL_uc010zfm.1_Missense_Mutation_p.R106H|CERKL_uc002unz.2_5'UTR|CERKL_uc002uoa.2_Missense_Mutation_p.R106H|CERKL_uc002uob.2_5'UTR|CERKL_uc002uoc.2_Missense_Mutation_p.R106H|CERKL_uc010frk.2_RNA|CERKL_uc002uod.1_5'UTR|CERKL_uc002uoe.2_Missense_Mutation_p.R106H	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	106	Nuclear localization signal 2.		R -> S (in RP26).	KRR->GGG: Only cytoplasmic.	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			AACAGAACAACGCCGTTTCAG	0.313000													19	21					0	0	1	0	0	
ZSWIM2	151112	broad.mit.edu	37	2	187693320	187693320	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:187693320T>C	uc002upu.1	-	9	1333	c.1293A>G	c.(1291-1293)TTA>TTG	p.L431L		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	431					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GTTTTAAGACTAATCCAGTAC	0.353000													21	48					0	0	1	0	0	
ZSWIM2	151112	broad.mit.edu	37	2	187713711	187713711	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:187713711C>T	uc002upu.1	-	1	187	c.147G>A	c.(145-147)CCG>CCA	p.P49P		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	49					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CCATGTATTCCGGCTCCTCCT	0.622000													24	25					0	0	1	0	0	
ANKAR	150709	broad.mit.edu	37	2	190611170	190611170	+	Silent	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:190611170T>G	uc002uqw.1	+	22	3909	c.3909T>G	c.(3907-3909)CCT>CCG	p.P1303P	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA|ANKAR_uc002uqy.1_3'UTR	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	1374						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			CTTTATTACCTCCTGTAACTA	0.323000													44	118					0	0	1	0	0	
GLS	2744	broad.mit.edu	37	2	191760352	191760352	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:191760352G>A	uc002usf.2	+	3	770	c.506G>A	c.(505-507)CGA>CAA	p.R169Q	GLS_uc002usd.2_3'UTR|GLS_uc002use.2_Missense_Mutation_p.R169Q	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor	169					cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	ACAGGATTGCGAACGTCTGAT	0.303000													20	45					0	0	1	0	0	
ALS2CR11	151254	broad.mit.edu	37	2	202483623	202483623	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:202483623G>A	uc002uye.2	-	1	279	c.231C>T	c.(229-231)AAC>AAT	p.N77N	ALS2CR11_uc002uyf.2_Silent_p.N77N|ALS2CR11_uc010fti.2_Silent_p.N77N	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	77										large_intestine(1)|ovary(1)|skin(1)	3						GCTCACTCACGTTCAGCAGCC	0.637000													7	13					0	0	1	0	0	
MPP4	58538	broad.mit.edu	37	2	202520921	202520921	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:202520921C>T	uc002uyk.3	-	17	1508	c.1300G>A	c.(1300-1302)GGA>AGA	p.G434R	MPP4_uc002uyi.3_Missense_Mutation_p.G52R|MPP4_uc010ftj.2_Missense_Mutation_p.G427R|MPP4_uc010zhq.1_Missense_Mutation_p.G403R|MPP4_uc010zhr.1_Missense_Mutation_p.G410R|MPP4_uc010zhs.1_Missense_Mutation_p.G359R|MPP4_uc002uyj.3_Missense_Mutation_p.G399R|MPP4_uc010zht.1_Missense_Mutation_p.G376R|MPP4_uc002uyl.3_RNA|MPP4_uc010ftk.2_Missense_Mutation_p.G390R	NM_033066	NP_149055	Q96JB8	MPP4_HUMAN	membrane protein, palmitoylated 4	434	Guanylate kinase-like.					cytoplasm	protein binding				0						TGGGACATACCCATGAGCACT	0.527000													3	9					0	0	1	0	0	
ALS2	57679	broad.mit.edu	37	2	202575807	202575807	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:202575807C>T	uc002uyo.2	-	26	4385	c.4029G>A	c.(4027-4029)CAG>CAA	p.Q1343Q	ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	1343					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						GTGTCTGAGTCTGTGAACGAC	0.358000													17	43					0	0	1	0	0	
KLF7	8609	broad.mit.edu	37	2	207953238	207953238	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:207953238C>T	uc002vbz.1	-	3	1123	c.801G>A	c.(799-801)ACG>ACA	p.T267T	KLF7_uc002vca.1_Missense_Mutation_p.R200Q|KLF7_uc010zix.1_Silent_p.T239T	NM_003709	NP_003700	O75840	KLF7_HUMAN	Kruppel-like factor 7 (ubiquitous)	267	C2H2-type 2.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			central_nervous_system(1)|skin(1)	2				LUSC - Lung squamous cell carcinoma(261;0.0856)|Lung(261;0.166)|Epithelial(149;0.173)		TGTAGTGCCTCGTGAGCTCAT	0.522000													33	53					0	0	1	0	0	
PLEKHM3	389072	broad.mit.edu	37	2	208725856	208725856	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:208725856T>C	uc002vcl.2	-	7	2571	c.2081A>G	c.(2080-2082)TAC>TGC	p.Y694C		NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	694	Phorbol-ester/DAG-type.				intracellular signal transduction		metal ion binding			ovary(1)	1						CTCAAAAGGGTAGAGGATCTC	0.408000													52	103					0	0	1	0	0	
PIKFYVE	200576	broad.mit.edu	37	2	209209918	209209918	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:209209918G>A	uc002vcz.2	+	33	5269	c.5111G>A	c.(5110-5112)AGT>AAT	p.S1704N		NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1704					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CCAACAAATAGGTGATTCATG	0.333000													13	23					0	0	1	0	0	
PIKFYVE	200576	broad.mit.edu	37	2	209212722	209212722	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:209212722C>T	uc002vcz.2	+	35	5507	c.5349C>T	c.(5347-5349)ACC>ACT	p.T1783T		NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1783	PIPK.				cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						AGGAGGGGACCGAGAATCAAG	0.448000													14	40					0	0	1	0	0	
MAP2	4133	broad.mit.edu	37	2	210559225	210559225	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:210559225A>G	uc002vde.1	+	7	2579	c.2331A>G	c.(2329-2331)GAA>GAG	p.E777E	MAP2_uc002vdc.1_Silent_p.E777E|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Silent_p.E773E	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	777					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	CTACTGGAGAAGAAAGTACTC	0.443000													42	74					0	0	1	0	0	
MAP2	4133	broad.mit.edu	37	2	210570373	210570373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:210570373C>T	uc002vde.1	+	11	4902	c.4654C>T	c.(4654-4656)CGA>TGA	p.R1552*	MAP2_uc002vdd.1_Nonsense_Mutation_p.R253*|MAP2_uc002vdf.1_Nonsense_Mutation_p.R196*|MAP2_uc002vdg.1_Nonsense_Mutation_p.R196*|MAP2_uc002vdh.1_Nonsense_Mutation_p.R253*|MAP2_uc002vdi.1_Nonsense_Mutation_p.R1548*	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1552					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	CCCTCCTCGGCGAGGTGTGTC	0.473000													33	111					0	0	1	0	0	
ERBB4	2066	broad.mit.edu	37	2	212589893	212589893	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:212589893A>G	uc002veg.1	-	6	747	c.649T>C	c.(649-651)TGT>CGT	p.C217R	ERBB4_uc002veh.1_Missense_Mutation_p.C217R|ERBB4_uc010zji.1_Missense_Mutation_p.C217R|ERBB4_uc010zjj.1_Missense_Mutation_p.C217R|ERBB4_uc010fut.1_Missense_Mutation_p.C217R	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	217	Cys-rich.|Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CTGCCGTCACATTGTTCTGCA	0.507000										TSP Lung(8;0.080)			19	43					0	0	1	0	0	
FN1	2335	broad.mit.edu	37	2	216257776	216257776	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:216257776A>G	uc002vfa.2	-	25	4213	c.3947T>C	c.(3946-3948)GTG>GCG	p.V1316A	FN1_uc002vfb.2_Intron|FN1_uc002vfc.2_Intron|FN1_uc002vfd.2_Missense_Mutation_p.V1316A|FN1_uc002vfe.2_Intron|FN1_uc002vff.2_Intron|FN1_uc002vfg.2_Intron|FN1_uc002vfh.2_Intron|FN1_uc002vfi.2_Missense_Mutation_p.V1316A|FN1_uc002vfj.2_Missense_Mutation_p.V1316A|FN1_uc002vez.2_5'Flank|FN1_uc010zjp.1_5'UTR	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1316	Fibronectin type-III 8.|Cell-attachment.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGAGGAGTCCACAAAATCTTC	0.507000													16	43					0	0	1	0	0	
TNS1	7145	broad.mit.edu	37	2	218674687	218674687	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:218674687A>G	uc002vgt.2	-	30	5218	c.4820T>C	c.(4819-4821)GTG>GCG	p.V1607A	TNS1_uc002vgr.2_Missense_Mutation_p.V1593A|TNS1_uc002vgs.2_Missense_Mutation_p.V1586A|TNS1_uc002vgq.2_Missense_Mutation_p.V107A	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1607						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CTCCATGTCCACAGAGTTGAC	0.552000													7	23					0	0	1	0	0	
CCDC108	255101	broad.mit.edu	37	2	219900384	219900384	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:219900384G>A	uc002vjl.1	-	5	444	c.360C>T	c.(358-360)CCC>CCT	p.P120P	CCDC108_uc010zkp.1_Silent_p.P109P|CCDC108_uc010zkq.1_Silent_p.P55P|CCDC108_uc002vjn.2_Silent_p.P55P	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	120						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGAGCTTGCGGGCTGTTCAG	0.567000													14	40					0	0	1	0	0	
SLC23A3	151295	broad.mit.edu	37	2	220033482	220033482	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:220033482A>G	uc010zks.1	-	5	677	c.566T>C	c.(565-567)TTC>TCC	p.F189S	NHEJ1_uc002vjq.3_RNA|SLC23A3_uc010zkr.1_Missense_Mutation_p.F197S|SLC23A3_uc010fwb.2_Missense_Mutation_p.F189S|SLC23A3_uc002vjs.1_Silent_p.V41V|SLC23A3_uc002vjt.1_Missense_Mutation_p.F47S	NM_001144889	NP_001138361	Q6PIS1	S23A3_HUMAN	solute carrier family 23 (nucleobase	189	Helical; (Potential).				transmembrane transport	integral to membrane	protein binding|transporter activity				0		Renal(207;0.0474)		Epithelial(149;9.27e-07)|all cancers(144;0.000156)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACAGTGGGGGAACACGTGGCC	0.647000													8	22					0	0	1	0	0	
ANKZF1	55139	broad.mit.edu	37	2	220098560	220098560	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:220098560C>T	uc002vkg.2	+	8	1117	c.943C>T	c.(943-945)CAA>TAA	p.Q315*	ANKZF1_uc010zkv.1_Nonsense_Mutation_p.Q259*|ANKZF1_uc010zkw.1_Nonsense_Mutation_p.Q105*|ANKZF1_uc002vkh.2_Nonsense_Mutation_p.Q105*|ANKZF1_uc002vki.2_Nonsense_Mutation_p.Q315*|ANKZF1_uc002vkj.1_Nonsense_Mutation_p.Q303*	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	315						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGCACCCCTGCAAAGGGGGGA	0.602000													30	70					0	0	1	0	0	
SPEG	10290	broad.mit.edu	37	2	220331921	220331921	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:220331921C>T	uc010fwg.2	+	10	2907	c.2907C>T	c.(2905-2907)GCC>GCT	p.A969A		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	969	Ig-like 4.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGTCCCTGGCCGTGCTGGCCC	0.677000											OREG0004000	type=REGULATORY REGION|Gene=APEG1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	22	61					0	0	1	0	0	
ACCN4	55515	broad.mit.edu	37	2	220379897	220379897	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:220379897C>T	uc002vma.2	+	1	846	c.832C>T	c.(832-834)CGT>TGT	p.R278C	ACCN4_uc010fwi.1_Missense_Mutation_p.R278C|ACCN4_uc010fwj.1_Missense_Mutation_p.R278C|ACCN4_uc002vly.1_Missense_Mutation_p.R278C|ACCN4_uc002vlz.2_Missense_Mutation_p.R278C|ACCN4_uc002vmb.2_5'Flank	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	278	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		GGATGGGCACCGTGCGGCTGG	0.612000													6	21					0	0	1	0	0	
SERPINE2	5270	broad.mit.edu	37	2	224856607	224856607	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:224856607C>T	uc002vnu.2	-	4	841	c.598G>A	c.(598-600)GAG>AAG	p.E200K	SERPINE2_uc002vnt.2_Missense_Mutation_p.E200K|SERPINE2_uc010zlr.1_Missense_Mutation_p.E212K|SERPINE2_uc002vnv.2_Missense_Mutation_p.E200K	NM_006216	NP_006207	P07093	GDN_HUMAN	plasminogen activator inhibitor type 1, member 2	200					negative regulation of blood coagulation|negative regulation of plasminogen activation|negative regulation of platelet aggregation|positive regulation of astrocyte differentiation|regulation of cell migration	cytosol|extracellular matrix|extracellular space|extrinsic to external side of plasma membrane|neuromuscular junction|platelet alpha granule	heparin binding|receptor binding|serine-type endopeptidase inhibitor activity			breast(2)|ovary(1)|central_nervous_system(1)	4		Renal(207;0.025)|all_lung(227;0.0586)|Lung NSC(271;0.0682)|all_hematologic(139;0.0797)		Epithelial(121;5.68e-10)|all cancers(144;1.9e-07)|Lung(261;0.0088)|LUSC - Lung squamous cell carcinoma(224;0.00902)		TTTGTGTTCTCGGGTTGGAAC	0.527000													12	31					0	0	1	0	0	
SERPINE2	5270	broad.mit.edu	37	2	224866442	224866442	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:224866442G>A	uc002vnu.2	-	2	419	c.176C>T	c.(175-177)GCG>GTG	p.A59V	SERPINE2_uc002vnt.2_Missense_Mutation_p.A59V|SERPINE2_uc010zlr.1_Missense_Mutation_p.A71V|SERPINE2_uc002vnv.2_Missense_Mutation_p.A59V	NM_006216	NP_006207	P07093	GDN_HUMAN	plasminogen activator inhibitor type 1, member 2	59					negative regulation of blood coagulation|negative regulation of plasminogen activation|negative regulation of platelet aggregation|positive regulation of astrocyte differentiation|regulation of cell migration	cytosol|extracellular matrix|extracellular space|extrinsic to external side of plasma membrane|neuromuscular junction|platelet alpha granule	heparin binding|receptor binding|serine-type endopeptidase inhibitor activity			breast(2)|ovary(1)|central_nervous_system(1)	4		Renal(207;0.025)|all_lung(227;0.0586)|Lung NSC(271;0.0682)|all_hematologic(139;0.0797)		Epithelial(121;5.68e-10)|all cancers(144;1.9e-07)|Lung(261;0.0088)|LUSC - Lung squamous cell carcinoma(224;0.00902)		CAGGACCGACGCAATCCCATG	0.557000													29	53					0	0	1	0	0	
DOCK10	55619	broad.mit.edu	37	2	225637972	225637972	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:225637972T>C	uc010fwz.1	-	53	6345	c.6106A>G	c.(6106-6108)ATG>GTG	p.M2036V	DOCK10_uc002vob.2_Missense_Mutation_p.M2030V|DOCK10_uc002voa.2_Missense_Mutation_p.M692V	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	2036	DHR-2.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TTCTTGGACATCTCGTCAATT	0.448000													7	45					0	0	1	0	0	
SLC19A3	80704	broad.mit.edu	37	2	228560704	228560704	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:228560704C>T	uc002vpi.2	-	4	1162	c.1073G>A	c.(1072-1074)GGT>GAT	p.G358D	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.G354D	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	358	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	AAATAAAGAACCGGCATTGAC	0.468000													26	67					0	0	1	0	0	
PID1	55022	broad.mit.edu	37	2	229890607	229890607	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:229890607C>T	uc002vpr.3	-	3	532	c.494G>A	c.(493-495)CGC>CAC	p.R165H	PID1_uc002vps.3_Missense_Mutation_p.R163H|PID1_uc002vpt.3_Missense_Mutation_p.R132H|PID1_uc002vpu.3_Missense_Mutation_p.R83H	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	165	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		GTAGGCGATGCGGGCCACCTG	0.582000													26	60					0	0	1	0	0	
PID1	55022	broad.mit.edu	37	2	230020538	230020538	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:230020538C>T	uc002vpr.3	-	2	310	c.272G>A	c.(271-273)TGC>TAC	p.C91Y	PID1_uc002vps.3_Missense_Mutation_p.C89Y|PID1_uc002vpt.3_Missense_Mutation_p.C58Y|PID1_uc002vpu.3_Intron	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	91						cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		CCATACCTTGCAGCCACTGTG	0.517000													19	45					0	0	1	0	0	
ALPP	250	broad.mit.edu	37	2	233244007	233244007	+	Silent	SNP	A	G	G	rs1130339		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:233244007A>G	uc002vsq.2	+	3	456	c.291A>G	c.(289-291)CCA>CCG	p.P97P	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	97						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		ACCGCTTCCCATATGTGGCTC	0.572000													8	27					0	0	1	0	0	
ALPP	250	broad.mit.edu	37	2	233244010	233244010	+	Silent	SNP	T	C	C	rs1130340		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:233244010T>C	uc002vsq.2	+	3	459	c.294T>C	c.(292-294)TAT>TAC	p.Y98Y	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	98						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		GCTTCCCATATGTGGCTCTGT	0.567000													8	26					0	0	1	0	0	
ECEL1	9427	broad.mit.edu	37	2	233350967	233350967	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:233350967C>T	uc002vsv.2	-	2	602	c.397G>A	c.(397-399)GGT>AGT	p.G133S	ECEL1_uc010fya.1_Missense_Mutation_p.G133S|ECEL1_uc010fyb.1_5'UTR	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	133	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CGCAGCCAACCGCCGCAGGCG	0.682000													5	8					0	0	1	0	0	
SH3BP4	23677	broad.mit.edu	37	2	235950020	235950020	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:235950020A>G	uc002vvp.2	+	4	1000	c.607A>G	c.(607-609)ACC>GCC	p.T203A	SH3BP4_uc010fym.2_Missense_Mutation_p.T203A|SH3BP4_uc002vvq.2_Missense_Mutation_p.T203A	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	203					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		ATCCTCCTTCACCGAATCCAG	0.542000													35	34					0	0	1	0	0	
PASK	23178	broad.mit.edu	37	2	242051830	242051830	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:242051830G>A	uc002wao.1	-	15	3450	c.3358C>T	c.(3358-3360)CGC>TGC	p.R1120C	PASK_uc010zol.1_Missense_Mutation_p.R934C|PASK_uc010zom.1_Missense_Mutation_p.R1085C|PASK_uc010fzl.1_Missense_Mutation_p.R1127C|PASK_uc010zon.1_Missense_Mutation_p.R901C	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	1120	Protein kinase.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		TCCTTCAAGCGCAGGTATCCC	0.458000													11	10					0	0	1	0	0	
TGM6	343641	broad.mit.edu	37	20	2411645	2411645	+	Missense_Mutation	SNP	G	A	A	rs150652148	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:2411645G>A	uc002wfy.1	+	12	2000	c.1939G>A	c.(1939-1941)GGC>AGC	p.G647S	TGM6_uc010gal.1_Intron	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	647					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GGAGGGCAGCGGCCTTCTCCA	0.597000													27	52					0	0	1	0	0	
VPS16	64601	broad.mit.edu	37	20	2847077	2847077	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:2847077G>A	uc002whe.2	+	24	2425	c.2377G>A	c.(2377-2379)GAT>AAT	p.D793N	VPS16_uc002whh.2_Intron|PTPRA_uc002whj.2_Intron|VPS16_uc002whf.2_Missense_Mutation_p.D649N|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Missense_Mutation_p.D479N|VPS16_uc002whi.2_Missense_Mutation_p.D277N	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	793					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						AAACCACAGCGATGTGGCTCA	0.622000													20	38					0	0	1	0	0	
SLC4A11	83959	broad.mit.edu	37	20	3209805	3209805	+	Silent	SNP	G	A	A	rs143520364		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:3209805G>A	uc002wig.2	-	15	2050	c.2002C>T	c.(2002-2004)CTG>TTG	p.L668L	SLC4A11_uc010zqe.1_Silent_p.L695L|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.L652L	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	668	Helical; (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						AGCATGGACAGCAGGAAGCCG	0.647000													8	30					0	0	1	0	0	
C20orf27	54976	broad.mit.edu	37	20	3739228	3739228	+	Silent	SNP	C	T	T	rs138016250	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:3739228C>T	uc002wji.1	-	3	346	c.117G>A	c.(115-117)TCG>TCA	p.S39S	C20orf27_uc002wjf.1_Silent_p.S64S|C20orf27_uc002wjh.1_Silent_p.S64S	NM_001039140	NP_001034229	Q9GZN8	CT027_HUMAN	hypothetical protein LOC54976	39											0						CCATGACCACCGAGTCATGCA	0.587000													15	41					0	0	1	0	0	
CDC25B	994	broad.mit.edu	37	20	3782935	3782935	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:3782935G>A	uc002wjn.2	+	11	1884	c.1106G>A	c.(1105-1107)CGC>CAC	p.R369H	CDC25B_uc010zqk.1_Missense_Mutation_p.R305H|CDC25B_uc010zql.1_Missense_Mutation_p.R291H|CDC25B_uc010zqm.1_Missense_Mutation_p.R278H|CDC25B_uc002wjl.2_Missense_Mutation_p.R257H|CDC25B_uc002wjm.2_Missense_Mutation_p.R257H|CDC25B_uc002wjo.2_Missense_Mutation_p.R355H|CDC25B_uc002wjp.2_Missense_Mutation_p.R328H|CDC25B_uc002wjq.2_Missense_Mutation_p.R169H|CDC25B_uc010gbc.2_5'Flank	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	369					cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						CAGAAAGCCCGCGTCCTCCGC	0.587000													7	32					0	0	1	0	0	
CHGB	1114	broad.mit.edu	37	20	5903119	5903119	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:5903119A>G	uc002wmg.2	+	4	635	c.329A>G	c.(328-330)GAG>GGG	p.E110G	CHGB_uc010zqz.1_Intron	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	110						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CCAGGGGAGGAGGACATCCAA	0.592000													6	15					0	0	1	0	0	
PLCB1	23236	broad.mit.edu	37	20	8639248	8639248	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:8639248G>A	uc002wnb.2	+	9	762	c.759G>A	c.(757-759)CAG>CAA	p.Q253Q	PLCB1_uc010zrb.1_Silent_p.Q152Q|PLCB1_uc002wna.2_Silent_p.Q253Q|PLCB1_uc002wnc.1_Silent_p.Q152Q	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	253					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						ACCTTAAGCAGCGAGATCCTC	0.368000													36	80					0	0	1	0	0	
ESF1	51575	broad.mit.edu	37	20	13756530	13756530	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:13756530G>A	uc002woj.2	-	3	1132	c.1024C>T	c.(1024-1026)CGT>TGT	p.R342C	ESF1_uc002wok.1_Missense_Mutation_p.R342C	NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	342					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						TCATCAGCACGAGGAGCATCT	0.368000													31	94					0	0	1	0	0	
SEL1L2	80343	broad.mit.edu	37	20	13830886	13830886	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:13830886A>G	uc010gcf.2	-	19	1980	c.1898T>C	c.(1897-1899)GTC>GCC	p.V633A	SEL1L2_uc002woq.3_Missense_Mutation_p.V494A|SEL1L2_uc010zrl.1_Missense_Mutation_p.V520A|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	633	Extracellular (Potential).					integral to membrane	binding			ovary(2)	2						CAGTTTCATGACGGCAAAGAG	0.458000													19	43					0	0	1	0	0	
C20orf160	140706	broad.mit.edu	37	20	30602726	30602726	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:30602726G>A	uc002wxf.2	+	2	63	c.50G>A	c.(49-51)CGA>CAA	p.R17Q		NM_080625	NP_542192	Q9NUG4	CT160_HUMAN	hypothetical protein LOC140706	17										central_nervous_system(3)|ovary(1)	4						TCCCCCATCCGAAGGCTGGTG	0.522000													33	115					0	0	1	0	0	
KIF3B	9371	broad.mit.edu	37	20	30919102	30919102	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:30919102C>T	uc002wxq.2	+	9	2391	c.2224C>T	c.(2224-2226)CGG>TGG	p.R742W	KIF3B_uc010ztw.1_Missense_Mutation_p.R680W	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	742	Globular.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TCCACAGTCTCGGGGGCTGGT	0.502000													14	40					0	0	1	0	0	
MAP1LC3A	84557	broad.mit.edu	37	20	33147545	33147545	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:33147545G>A	uc002xaq.1	+	4	363	c.209G>A	c.(208-210)CGC>CAC	p.R70H	MAP1LC3A_uc002xap.1_Missense_Mutation_p.R74H	NM_032514	NP_115903	Q9H492	MLP3A_HUMAN	microtubule-associated protein 1 light chain 3	70					autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|cytosol|endomembrane system|microtubule	phosphatidylethanolamine binding|protein binding				0						TGCAGGCGCCGCCTGCAGCTG	0.627000													22	57					0	0	1	0	0	
NCOA6	23054	broad.mit.edu	37	20	33345756	33345756	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:33345756T>C	uc002xav.2	-	8	3366	c.795A>G	c.(793-795)CAA>CAG	p.Q265Q	NCOA6_uc002xaw.2_Silent_p.Q265Q|NCOA6_uc010gew.1_Silent_p.Q222Q	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	265	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						gttgttgttgttgctgctgct	0.313000													4	45					0	0	1	0	0	
MYH7B	57644	broad.mit.edu	37	20	33567228	33567228	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:33567228G>A	uc010gfa.1	+	3	248	c.127G>A	c.(127-129)GCC>ACC	p.A43T	MYH7B_uc002xbi.1_Missense_Mutation_p.A85T			A7E2Y1	MYH7B_HUMAN	RecName: Full=Myosin-7B; AltName: Full=Myosin heavy chain 7B, cardiac muscle beta isoform; AltName: Full=Myosin cardiac muscle beta chain; AltName: Full=Antigen MLAA-21; AltName: Full=Slow A MYH14;	43						membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			TGAACAGGACGCCTACGTGGA	0.602000													7	18					0	0	1	0	0	
MYH7B	57644	broad.mit.edu	37	20	33582020	33582020	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:33582020T>A	uc002xbi.1	+	25	2734	c.2642T>A	c.(2641-2643)CTC>CAC	p.L881H		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	839						membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			TGGATGAAGCTCTTTTTCAAG	0.632000													44	96					0	0	1	0	0	
TRPC4AP	26133	broad.mit.edu	37	20	33632505	33632505	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:33632505C>T	uc002xbk.2	-	7	702	c.668G>A	c.(667-669)CGA>CAA	p.R223Q	TRPC4AP_uc002xbl.2_Missense_Mutation_p.R223Q|TRPC4AP_uc010zur.1_Missense_Mutation_p.R184Q|TRPC4AP_uc002xbm.1_Missense_Mutation_p.R223Q	NM_015638	NP_056453	Q8TEL6	TP4AP_HUMAN	TRPC4-associated protein isoform a	223	Interaction with TNFRSF1A (By similarity).				protein ubiquitination|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00936)			TTCATCTAGTCGGATCATTTC	0.438000													25	54					0	0	1	0	0	
ERGIC3	51614	broad.mit.edu	37	20	34136287	34136287	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:34136287C>T	uc002xct.2	+	6	556	c.487C>T	c.(487-489)CGG>TGG	p.R163W	ERGIC3_uc002xcr.1_Missense_Mutation_p.R163W|ERGIC3_uc010zvg.1_Missense_Mutation_p.R163W|ERGIC3_uc002xcs.2_Missense_Mutation_p.R163W|ERGIC3_uc002xcu.2_Missense_Mutation_p.R163W|ERGIC3_uc002xcv.2_Missense_Mutation_p.R126W	NM_015966	NP_057050	Q9Y282	ERGI3_HUMAN	serologically defined breast cancer antigen 84	163	Lumenal (Potential).				vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane	protein binding			large_intestine(2)|ovary(1)	3	Lung NSC(9;0.00489)|all_lung(11;0.00729)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			TGAAGATGTGCGGGAGGCATA	0.552000													12	27					0	0	1	0	0	
CPNE1	8904	broad.mit.edu	37	20	34218842	34218842	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:34218842C>T	uc002xdf.2	-	13	1339	c.976G>A	c.(976-978)GTG>ATG	p.V326M	CPNE1_uc002xdc.2_Translation_Start_Site|CPNE1_uc010zvj.1_Missense_Mutation_p.V331M|CPNE1_uc002xde.2_Missense_Mutation_p.V302M|CPNE1_uc002xdg.2_Missense_Mutation_p.V326M|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.V326M|CPNE1_uc002xdi.2_Missense_Mutation_p.V326M|CPNE1_uc002xdj.2_Missense_Mutation_p.V326M|CPNE1_uc002xdk.2_Missense_Mutation_p.V326M|CPNE1_uc002xdl.2_Missense_Mutation_p.V326M|CPNE1_uc002xdm.2_Missense_Mutation_p.V326M|CPNE1_uc010gfk.1_3'UTR	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	326	VWFA.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			TCCTGAACCACGCTGCCCACA	0.562000													30	59					0	0	1	0	0	
RBM12	10137	broad.mit.edu	37	20	34240845	34240845	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:34240845G>A	uc002xdq.2	-	3	2632	c.2400C>T	c.(2398-2400)GGC>GGT	p.G800G	CPNE1_uc010zvj.1_Intron|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Silent_p.G800G|RBM12_uc002xds.2_Silent_p.G800G	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	800	Gly-rich.|Pro-rich.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CCGGGGGACCGCCTAAGCTAC	0.517000													17	39					0	0	1	0	0	
KIAA0406	9675	broad.mit.edu	37	20	36627620	36627620	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:36627620G>A	uc002xhl.2	-	6	2972	c.2763C>T	c.(2761-2763)GAC>GAT	p.D921D	KIAA0406_uc002xhm.2_Silent_p.D921D	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	921							binding				0		Myeloproliferative disorder(115;0.00874)				CCAGGGGGGCGTCCCGTGTGA	0.587000													15	38					0	0	1	0	0	
ACTR5	79913	broad.mit.edu	37	20	37383681	37383681	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:37383681G>A	uc002xjd.2	+	4	882	c.857G>A	c.(856-858)GGC>GAC	p.G286D		NM_024855	NP_079131	Q9H9F9	ARP5_HUMAN	ARP5 actin-related protein 5 homolog	286					DNA recombination|double-strand break repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent|UV-damage excision repair	cytoplasm|Ino80 complex	ATP binding|protein binding				0		Myeloproliferative disorder(115;0.00878)				AAGCTCCTGGGCAGCACTCTG	0.517000													24	57					0	0	1	0	0	
CHD6	84181	broad.mit.edu	37	20	40118601	40118601	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:40118601G>T	uc002xka.1	-	12	1675	c.1497C>A	c.(1495-1497)TTC>TTA	p.F499L	CHD6_uc002xkd.2_Missense_Mutation_p.F477L	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	499	Helicase ATP-binding.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TTTCTGAAAGGAATGTGATGG	0.443000													42	83					3.05275e-18	3.28929e-18	1	1	0	
PTPRT	11122	broad.mit.edu	37	20	40980850	40980850	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:40980850G>A	uc002xkg.2	-	10	1820	c.1636C>T	c.(1636-1638)CGG>TGG	p.R546W	PTPRT_uc010ggj.2_Missense_Mutation_p.R546W	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	546	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTTTCATTCCGGAGCTTGAAC	0.562000													23	58					0	0	1	0	0	
FITM2	128486	broad.mit.edu	37	20	42935750	42935750	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:42935750C>T	uc002xlr.1	-	2	405	c.304G>A	c.(304-306)GCC>ACC	p.A102T		NM_001080472	NP_001073941	Q8N6M3	FITM2_HUMAN	fat storage-inducing transmembrane protein 2	102	Helical; (Potential).				cellular triglyceride homeostasis|lipid particle organization|positive regulation of sequestering of triglyceride|regulation of triglyceride biosynthetic process	integral to endoplasmic reticulum membrane				skin(2)	2						TACCAGATGGCCGTGCCCACA	0.592000													10	26					0	0	1	0	0	
MATN4	8785	broad.mit.edu	37	20	43933214	43933214	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:43933214G>A	uc002xnn.2	-	3	484	c.297C>T	c.(295-297)CGC>CGT	p.R99R	MATN4_uc002xno.2_Silent_p.R99R|MATN4_uc002xnp.2_Silent_p.R99R|MATN4_uc010zwr.1_Silent_p.R47R|MATN4_uc002xnr.1_Silent_p.R99R|RBPJL_uc002xns.2_5'Flank|RBPJL_uc002xnt.2_5'Flank	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	99	VWFA 1.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				CGCGGATGGCGCGCTCCATGT	0.657000													7	17					0	0	1	0	0	
ACOT8	10005	broad.mit.edu	37	20	44483882	44483882	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:44483882C>T	uc002xqa.1	-	2	259	c.178G>A	c.(178-180)GTG>ATG	p.V60M	ACOT8_uc010zxe.1_Missense_Mutation_p.V60M|ACOT8_uc002xqc.1_Intron|ACOT8_uc010zxf.1_Intron|ZSWIM3_uc002xqd.2_5'Flank|ZSWIM3_uc010zxg.1_5'Flank	NM_005469	NP_005460	O14734	ACOT8_HUMAN	peroxisomal acyl-CoA thioesterase 1 isoform a	60					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|interspecies interaction between organisms|peroxisome organization	peroxisomal matrix	acetyl-CoA hydrolase activity|acyl-CoA thioesterase activity|carboxylesterase activity|choloyl-CoA hydrolase activity|protein binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GCCTGGCCCACGATCTGACCA	0.577000													20	65					0	0	1	0	0	
NCOA3	8202	broad.mit.edu	37	20	46276031	46276031	+	Missense_Mutation	SNP	G	A	A	rs146235035		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:46276031G>A	uc002xtk.2	+	18	3672	c.3467G>A	c.(3466-3468)CGA>CAA	p.R1156Q	NCOA3_uc010ght.1_Missense_Mutation_p.R1151Q|NCOA3_uc002xtl.2_Missense_Mutation_p.R1156Q|NCOA3_uc002xtm.2_Missense_Mutation_p.R1156Q|NCOA3_uc002xtn.2_Missense_Mutation_p.R1156Q|NCOA3_uc010zyc.1_Missense_Mutation_p.R951Q	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1156	Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						ATGCACCCACGAGCCAACATC	0.493000													22	55					0	0	1	0	0	
ARFGEF2	10564	broad.mit.edu	37	20	47628620	47628620	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:47628620G>A	uc002xtx.3	+	28	4069	c.3917G>A	c.(3916-3918)CGG>CAG	p.R1306Q	ARFGEF2_uc010zyf.1_Missense_Mutation_p.R599Q	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1306					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			GAGAGGCCTCGGGTTCGTTTT	0.507000													14	47					0	0	1	0	0	
KCNB1	3745	broad.mit.edu	37	20	47991448	47991448	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:47991448G>C	uc002xur.1	-	2	813	c.649C>G	c.(649-651)CTC>GTC	p.L217V	KCNB1_uc002xus.1_Missense_Mutation_p.L217V	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	217					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			AACTCATCGAGGCTCTGTAGC	0.567000													5	42					0	0	1	0	0	
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48744613	48744613	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:48744613C>T	uc002xvf.2	-	5	751	c.590G>A	c.(589-591)CGC>CAC	p.R197H	TMEM189_uc010zyq.1_RNA|TMEM189_uc002xvg.2_Missense_Mutation_p.R197H|TMEM189_uc010gif.2_Missense_Mutation_p.R194H|TMEM189_uc010zyp.1_Missense_Mutation_p.R122H	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	Error:Variant_position_missing_in_Q13404_after_alignment					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			GGTGACCCAGCGTGGCAGCCC	0.572000													18	32					0	0	1	0	0	
NFATC2	4773	broad.mit.edu	37	20	50092134	50092134	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:50092134G>A	uc002xwd.2	-	4	1616	c.1396C>T	c.(1396-1398)CGG>TGG	p.R466W	NFATC2_uc002xwc.2_Missense_Mutation_p.R466W|NFATC2_uc010zyv.1_Missense_Mutation_p.R247W|NFATC2_uc010zyw.1_Missense_Mutation_p.R247W|NFATC2_uc010zyx.1_Missense_Mutation_p.R446W|NFATC2_uc010zyy.1_Missense_Mutation_p.R247W|NFATC2_uc010zyz.1_Missense_Mutation_p.R247W|NFATC2_uc002xwe.2_Missense_Mutation_p.R446W	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	466	RHD.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					TTAAGGATCCGCTCATCAGCT	0.522000													21	54					0	0	1	0	0	
ZFP64	55734	broad.mit.edu	37	20	50701174	50701174	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:50701174G>A	uc002xwk.2	-	9	2209	c.1860C>T	c.(1858-1860)AGC>AGT	p.S620S	ZFP64_uc002xwj.2_Silent_p.S401S	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCGAGGCACCGCTTTCCGGTG	0.597000													13	15					0	0	1	0	0	
ZFP64	55734	broad.mit.edu	37	20	50705172	50705172	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:50705172C>T	uc002xwk.2	-	8	1336	c.987G>A	c.(985-987)CCG>CCA	p.P329P	ZFP64_uc002xwj.2_Silent_p.P110P	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	286					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CACACTTGTGCGGTTTGTCTC	0.478000													25	44					0	0	1	0	0	
ZNF217	7764	broad.mit.edu	37	20	52198731	52198731	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:52198731G>A	uc002xwq.3	-	1	906	c.635C>T	c.(634-636)TCC>TTC	p.S212F	ZNF217_uc010gij.1_Missense_Mutation_p.S204F	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	212					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			GTAAGGAGAGGAGATGCTCTC	0.498000													57	123					0	0	1	0	0	
CDH4	1002	broad.mit.edu	37	20	60419875	60419875	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:60419875A>G	uc002ybn.1	+	5	742	c.728A>G	c.(727-729)TAC>TGC	p.Y243C	CDH4_uc002ybp.1_Missense_Mutation_p.Y169C	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	243	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CACGCCTCTTACCACGTGAGT	0.677000													8	17					0	0	1	0	0	
GTPBP5	26164	broad.mit.edu	37	20	60773703	60773703	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:60773703C>T	uc002yce.3	+	5	520	c.482C>T	c.(481-483)ACG>ATG	p.T161M	GTPBP5_uc011aab.1_Translation_Start_Site|GTPBP5_uc011aac.1_Translation_Start_Site|GTPBP5_uc011aad.1_Translation_Start_Site|GTPBP5_uc011aae.1_Translation_Start_Site|GTPBP5_uc011aaf.1_Intron|GTPBP5_uc011aag.1_Missense_Mutation_p.T161M	NM_015666	NP_056481	Q9H4K7	GTPB5_HUMAN	GTP binding protein 5	161	Localized in the mitocondria.|Not localized in the mitocondria.				ribosome biogenesis	mitochondrion	GTP binding|GTPase activity|magnesium ion binding				0	Breast(26;3.52e-09)		BRCA - Breast invasive adenocarcinoma(19;2.5e-08)			CCCGTGGGCACGCTGGTGAAG	0.612000													6	14					0	0	1	0	0	
TCFL5	10732	broad.mit.edu	37	20	61488942	61488942	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:61488942C>T	uc002ydp.2	-	4	1136	c.1043G>A	c.(1042-1044)CGT>CAT	p.R348H	TCFL5_uc002ydo.2_Missense_Mutation_p.R121H|TCFL5_uc002ydq.2_Missense_Mutation_p.R347H	NM_006602	NP_006593	Q9UL49	TCFL5_HUMAN	transcription factor-like 5 protein	348	R3 epitope (recognized by Chagas's antibodies).				cell differentiation|multicellular organismal development|regulation of cell differentiation|regulation of cell proliferation|spermatogenesis|transcription from RNA polymerase II promoter		DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)	1	Breast(26;5.68e-08)					GTCCAACTGACGCATTCTACT	0.468000													37	51					0	0	1	0	0	
DIDO1	11083	broad.mit.edu	37	20	61512859	61512859	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:61512859G>A	uc002ydr.1	-	16	4713	c.4449C>T	c.(4447-4449)AAC>AAT	p.N1483N	DIDO1_uc002yds.1_Silent_p.N1483N	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1483					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CGATCTGTTTGTTCAGCTCTT	0.627000													31	77					0	0	1	0	0	
RTEL1	51750	broad.mit.edu	37	20	62292794	62292794	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:62292794G>A	uc002yfu.1	+	3	589	c.246G>A	c.(244-246)CCG>CCA	p.P82P	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Silent_p.P82P|RTEL1_uc011abd.1_Silent_p.P82P|RTEL1_uc002yfv.2_Silent_p.P82P|RTEL1_uc011abe.1_5'UTR|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	82	Helicase ATP-binding.				DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			AGCTTTTCCCGGATCGGGCCT	0.647000													8	26					0	0	1	0	0	
SAMSN1	64092	broad.mit.edu	37	21	15893518	15893518	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:15893518C>T	uc002yju.1	-	2	164	c.82G>A	c.(82-84)GAT>AAT	p.D28N	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Missense_Mutation_p.D96N	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	28					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		CGAAAACGATCGAAATTCCCA	0.289000													8	6					0	0	1	0	0	
NCAM2	4685	broad.mit.edu	37	21	22370891	22370891	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:22370891C>A	uc002yld.1	+	1	259	c.10C>A	c.(10-12)CTC>ATC	p.L4I	NCAM2_uc011acb.1_Missense_Mutation_p.L4I	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	4					neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		CATGAGCCTCCTCCTCTCCTT	0.562000													9	13					2.17888e-05	2.22293e-05	1	1	0	
NCAM2	4685	broad.mit.edu	37	21	22804504	22804504	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:22804504G>A	uc002yld.1	+	12	1806	c.1557G>A	c.(1555-1557)CCG>CCA	p.P519P	NCAM2_uc011acb.1_Silent_p.P377P	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	519	Fibronectin type-III 1.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		TCAACAAACCGGACTCCCATG	0.458000													11	20					0	0	1	0	0	
ADAMTS5	11096	broad.mit.edu	37	21	28296395	28296395	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:28296395G>A	uc002ymg.2	-	8	3499	c.2770C>T	c.(2770-2772)CAA>TAA	p.Q924*		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	924	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						AACAAGCATTGCTTAAACGCA	0.483000													21	21					0	0	1	0	0	
SON	6651	broad.mit.edu	37	21	34922887	34922887	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:34922887G>A	uc002yse.1	+	3	1399	c.1350G>A	c.(1348-1350)TCG>TCA	p.S450S	SON_uc002ysb.1_Silent_p.S450S|SON_uc002ysc.2_Silent_p.S450S|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	450					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						CACAGTTGTCGCAGGAATTGC	0.632000													14	11					0	0	1	0	0	
CBR1	873	broad.mit.edu	37	21	37444855	37444855	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:37444855G>T	uc002yvb.1	+	3	638	c.509G>T	c.(508-510)GGG>GTG	p.G170V	uc011aea.1_Intron|SETD4_uc002yva.2_Intron|CBR1_uc010gmy.1_3'UTR	NM_001757	NP_001748	P16152	CBR1_HUMAN	carbonyl reductase 1	170					drug metabolic process|vitamin K metabolic process	cytoplasm	15-hydroxyprostaglandin dehydrogenase (NADP+) activity|carbonyl reductase (NADPH) activity|prostaglandin-E2 9-reductase activity|protein binding				0					Acetohexamide(DB00414)|Lubiprostone(DB01046)	GAGCTGGTGGGGCTCATGAAC	0.557000													21	27					2.37509e-13	2.52523e-13	1	1	0	
RRP1B	23076	broad.mit.edu	37	21	45107700	45107700	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:45107700C>T	uc002zdk.2	+	13	1559	c.1445C>T	c.(1444-1446)GCC>GTC	p.A482V	RRP1B_uc002zdl.2_Missense_Mutation_p.A15V	NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	482					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		AGCCCGAGGGCCCACAGGGAA	0.612000													15	46					0	0	1	0	0	
TRPM2	7226	broad.mit.edu	37	21	45810858	45810858	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:45810858C>T	uc002zet.1	+	11	1603	c.1390C>T	c.(1390-1392)CGC>TGC	p.R464C	TRPM2_uc002zeu.1_Missense_Mutation_p.R464C|TRPM2_uc002zew.1_Missense_Mutation_p.R464C|TRPM2_uc010gpt.1_Missense_Mutation_p.R464C|TRPM2_uc002zex.1_Missense_Mutation_p.R250C|TRPM2_uc002zey.1_5'Flank	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	464	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGCATGGAATCGCGTGGACAT	0.577000													29	54					0	0	1	0	0	
COL6A2	1292	broad.mit.edu	37	21	47545966	47545966	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:47545966C>T	uc002zia.1	+	26	2319	c.2237C>T	c.(2236-2238)GCG>GTG	p.A746V	COL6A2_uc002zhy.1_Missense_Mutation_p.A746V|COL6A2_uc002zhz.1_Missense_Mutation_p.A746V|COL6A2_uc002zib.1_Missense_Mutation_p.A152V|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	746	VWFA 2.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		AACTTGCGGGCGCTGTGCGAC	0.627000													43	68					0	0	1	0	0	
COL6A2	1292	broad.mit.edu	37	21	47552362	47552362	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:47552362A>G	uc002zia.1	+	28	3038	c.2956A>G	c.(2956-2958)ACC>GCC	p.T986A	COL6A2_uc002zib.1_Missense_Mutation_p.T392A|COL6A2_uc002zic.1_Silent_p.S60S|COL6A2_uc010gqe.1_RNA	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	986	Nonhelical region.|VWFA 3.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GGACGTGCTCACCACGCTCAG	0.647000													8	19					0	0	1	0	0	
PCNT	5116	broad.mit.edu	37	21	47860946	47860946	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:47860946G>A	uc002zji.3	+	43	9679	c.9572G>A	c.(9571-9573)CGT>CAT	p.R3191H	PCNT_uc002zjj.2_Missense_Mutation_p.R2994H	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	3191	Interaction with NEK2.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					ATCACATCTCGTCCTTTCACC	0.493000													17	64					0	0	1	0	0	
CCT8L2	150160	broad.mit.edu	37	22	17072083	17072083	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:17072083G>A	uc002zlp.1	-	1	1618	c.1358C>T	c.(1357-1359)GCA>GTA	p.A453V		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	453					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TGCATTCTCTGCCAAAGTTTT	0.493000													23	75					0	0	1	0	0	
SLC25A18	83733	broad.mit.edu	37	22	18069980	18069980	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:18069980G>A	uc002zmp.1	+	8	982	c.488G>A	c.(487-489)CGC>CAC	p.R163H	SLC25A18_uc010gqx.2_Missense_Mutation_p.R163H|SLC25A18_uc002zmq.1_Missense_Mutation_p.R163H	NM_031481	NP_113669	Q9H1K4	GHC2_HUMAN	solute carrier	163	Solcar 2.					integral to membrane|mitochondrial inner membrane	binding|symporter activity				0				Lung(27;0.124)	L-Glutamic Acid(DB00142)	ACCCACAGGCGCCCCTCTGCC	0.637000													29	63					0	0	1	0	0	
ATP6V1E1	529	broad.mit.edu	37	22	18082820	18082820	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:18082820G>A	uc002zmr.1	-	6	595	c.408C>T	c.(406-408)TGC>TGT	p.C136C	ATP6V1E1_uc002zms.1_Silent_p.C106C|ATP6V1E1_uc002zmt.1_Silent_p.C114C	NM_001696	NP_001687	P36543	VATE1_HUMAN	vacuolar H+ ATPase E1 isoform a	136					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|cytosol|endosome|proton-transporting two-sector ATPase complex, catalytic domain	protein binding|proton-transporting ATPase activity, rotational mechanism			large_intestine(1)|central_nervous_system(1)	2		all_epithelial(15;0.206)		Lung(27;0.19)		CTTGTTTCCTGCAACGAACAA	0.269000													19	39					0	0	1	0	0	
DGCR2	9993	broad.mit.edu	37	22	19028754	19028754	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:19028754C>T	uc002zoq.1	-	9	1461	c.1213G>A	c.(1213-1215)GGG>AGG	p.G405R	DGCR2_uc002zor.1_Missense_Mutation_p.G181R|DGCR2_uc011agr.1_Missense_Mutation_p.G361R	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	405	Cytoplasmic (Potential).				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					GTGCCAAACCCGTCTGGGCCG	0.587000													14	33					0	0	1	0	0	
VPREB1	7441	broad.mit.edu	37	22	22599386	22599386	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:22599386G>A	uc002zvx.1	+	2	101	c.75G>A	c.(73-75)CAG>CAA	p.Q25Q	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	25	Framework-1.|Ig-like V-type.				immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		TGCTGCATCAGCCGCCGGCCA	0.617000													15	39					0	0	1	0	0	
LOC96610	96610	broad.mit.edu	37	22	23029667	23029667	+	RNA	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:23029667C>T	uc011aim.1	+	128		c.8306C>T								Parts of antibodies, mostly variable regions.												0						ACAACAGTCACGTTGACCATC	0.537000													20	48					0	0	1	0	0	
BCR	613	broad.mit.edu	37	22	23615883	23615883	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:23615883C>T	uc002zww.2	+	8	2633	c.2037C>T	c.(2035-2037)CGC>CGT	p.R679R	BCR_uc002zwx.2_Silent_p.R679R|BCR_uc011aiy.1_Silent_p.R268R|BCR_uc010gtx.1_Silent_p.R146R	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	679	DH.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						ACGCCCTCCGCATCTCACAGA	0.582000			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								14	58					0	0	1	0	0	
SUSD2	56241	broad.mit.edu	37	22	24583691	24583691	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:24583691C>T	uc002zzn.1	+	12	2088	c.2044C>T	c.(2044-2046)CTA>TTA	p.L682L		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	682	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GGCAGCCAAACTATGTGGGGA	0.617000													40	36					0	0	1	0	0	
MYO18B	84700	broad.mit.edu	37	22	26286756	26286756	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:26286756C>T	uc003abz.1	+	26	4598	c.4348C>T	c.(4348-4350)CGC>TGC	p.R1450C	MYO18B_uc003aca.1_Missense_Mutation_p.R1331C|MYO18B_uc010guy.1_Missense_Mutation_p.R1332C|MYO18B_uc010guz.1_Missense_Mutation_p.R1331C|MYO18B_uc011aka.1_Missense_Mutation_p.R604C|MYO18B_uc011akb.1_Missense_Mutation_p.R963C	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1450	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TGCCGATGAGCGCTTCAAAGG	0.597000													8	27					0	0	1	0	0	
MYO18B	84700	broad.mit.edu	37	22	26423244	26423244	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:26423244G>A	uc003abz.1	+	43	7554	c.7304G>A	c.(7303-7305)CGC>CAC	p.R2435H	MYO18B_uc003aca.1_Missense_Mutation_p.R2316H|MYO18B_uc010guy.1_Missense_Mutation_p.R2317H|MYO18B_uc010guz.1_Missense_Mutation_p.R2315H|MYO18B_uc011aka.1_Missense_Mutation_p.R1589H|MYO18B_uc011akb.1_Missense_Mutation_p.R1948H|MYO18B_uc010gva.1_Missense_Mutation_p.R418H|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2435						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GACTACGAACGCAAGACCAAA	0.562000													30	55					0	0	1	0	0	
MYO18B	84700	broad.mit.edu	37	22	26423522	26423522	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:26423522C>G	uc003abz.1	+	43	7832	c.7582C>G	c.(7582-7584)CCA>GCA	p.P2528A	MYO18B_uc003aca.1_Missense_Mutation_p.P2409A|MYO18B_uc010guy.1_Missense_Mutation_p.P2410A|MYO18B_uc010guz.1_Missense_Mutation_p.P2408A|MYO18B_uc011aka.1_Missense_Mutation_p.P1682A|MYO18B_uc011akb.1_Missense_Mutation_p.P2041A|MYO18B_uc010gva.1_Missense_Mutation_p.P511A|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2528						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CAAAAGTCGACCAGGAATCCC	0.607000													7	18					0	0	1	0	0	
TFIP11	24144	broad.mit.edu	37	22	26902876	26902876	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:26902876C>T	uc003acr.2	-	4	602	c.228G>A	c.(226-228)GCG>GCA	p.A76A	TFIP11_uc003acs.2_Silent_p.A76A|TFIP11_uc003act.2_Silent_p.A76A	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	76					biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						AGTTGACTGGCGCAGAGTAGT	0.527000													16	32					0	0	1	0	0	
AP1B1	162	broad.mit.edu	37	22	29750665	29750665	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:29750665G>A	uc003afj.2	-	7	1096	c.912C>T	c.(910-912)CGC>CGT	p.R304R	AP1B1_uc003afi.2_Silent_p.R304R|AP1B1_uc003afk.2_Silent_p.R304R|AP1B1_uc003afl.2_Silent_p.R304R	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	304					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						GATTGATGTTGCGCAGGGCCA	0.587000													10	44					0	0	1	0	0	
ASCC2	84164	broad.mit.edu	37	22	30210714	30210714	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:30210714C>T	uc003agr.2	-	7	757	c.652G>A	c.(652-654)GGG>AGG	p.G218R	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.G218R|ASCC2_uc011akr.1_Missense_Mutation_p.G142R	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	218					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			GTATTGGCCCCGTCCCCTTGC	0.567000													17	26					0	0	1	0	0	
OSM	5008	broad.mit.edu	37	22	30660085	30660085	+	Silent	SNP	C	T	T	rs115512471	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:30660085C>T	uc003ahb.2	-	3	598	c.546G>A	c.(544-546)TCG>TCA	p.S182S		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	182					cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			GAAAAGCATCCGAGGCAGGGG	0.652000													9	18					0	0	1	0	0	
PLA2G3	50487	broad.mit.edu	37	22	31535952	31535952	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:31535952T>A	uc003aka.2	-	1	518	c.389A>T	c.(388-390)AAG>ATG	p.K130M		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	130					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						TGCTCGCTTCTTCCTGGCCCC	0.627000													4	34					0	0	1	0	0	
PATZ1	23598	broad.mit.edu	37	22	31731813	31731813	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:31731813G>A	uc003akq.2	-	3	2033	c.1372C>T	c.(1372-1374)CGC>TGC	p.R458C	PATZ1_uc003akp.2_Missense_Mutation_p.R458C|PATZ1_uc003akr.2_Missense_Mutation_p.R458C	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	458	C2H2-type 5.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						AGGTGGGAGCGCAGACGGTCT	0.562000													18	31					0	0	1	0	0	
SFI1	9814	broad.mit.edu	37	22	31957338	31957338	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:31957338C>T	uc003ale.2	+	8	1118	c.725C>T	c.(724-726)GCC>GTC	p.A242V	SFI1_uc003ald.1_Missense_Mutation_p.A218V|SFI1_uc003alf.2_Missense_Mutation_p.A242V|SFI1_uc003alg.2_Missense_Mutation_p.A160V|SFI1_uc011alp.1_Missense_Mutation_p.A160V|SFI1_uc011alq.1_Missense_Mutation_p.A218V|SFI1_uc003alh.2_RNA	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	242					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						GCCCTCCATGCCTCTGCTTTG	0.567000											OREG0026480	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	15					0	0	1	0	0	
SFI1	9814	broad.mit.edu	37	22	32011096	32011096	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:32011096G>A	uc003ale.2	+	29	3524	c.3131G>A	c.(3130-3132)CGG>CAG	p.R1044Q	SFI1_uc003alf.2_Missense_Mutation_p.R1013Q|SFI1_uc003alg.2_Missense_Mutation_p.R962Q|SFI1_uc011alp.1_Missense_Mutation_p.R950Q|SFI1_uc011alq.1_Missense_Mutation_p.R989Q|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA|SFI1_uc003ali.2_Missense_Mutation_p.R136Q|SFI1_uc003alj.2_Missense_Mutation_p.R178Q	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	1044					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						TCCCTGACGCGGCCCTTCCTG	0.697000													13	14					0	0	1	0	0	
PISD	23761	broad.mit.edu	37	22	32015742	32015742	+	Silent	SNP	G	A	A	rs137875167	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:32015742G>A	uc003alm.3	-	8	1093	c.1086C>T	c.(1084-1086)GGC>GGT	p.G362G	PISD_uc003alk.2_Silent_p.G328G|PISD_uc003all.2_3'UTR|PISD_uc011alr.1_Silent_p.G327G|PISD_uc003aln.3_Silent_p.G324G	NM_014338	NP_055153	Q9UG56	PISD_HUMAN	phosphatidylserine decarboxylase	362					phospholipid biosynthetic process	mitochondrion	phosphatidylserine decarboxylase activity			central_nervous_system(2)|ovary(1)	3					Phosphatidylserine(DB00144)	GCATGGGGACGCCCTCTCTAT	0.577000													13	27					0	0	1	0	0	
DEPDC5	9681	broad.mit.edu	37	22	32302481	32302481	+	Nonstop_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:32302481T>C	uc003als.2	+	42	4859	c.4717T>C	c.(4717-4719)TGA>CGA	p.*1573R	DEPDC5_uc011als.1_Nonstop_Mutation_p.*1504R|DEPDC5_uc011alu.1_Nonstop_Mutation_p.*1604R|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Nonstop_Mutation_p.*1595R|DEPDC5_uc003alu.2_Nonstop_Mutation_p.*1022R|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Nonstop_Mutation_p.*871R|DEPDC5_uc011alx.1_Nonstop_Mutation_p.*421R|DEPDC5_uc010gwk.2_3'UTR|DEPDC5_uc011aly.1_Nonstop_Mutation_p.*421R	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1573					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CAGTGCCCCGTGAGGCCAGGC	0.617000													42	97					0	0	1	0	0	
LARGE	9215	broad.mit.edu	37	22	33712138	33712138	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:33712138G>A	uc003and.3	-	12	1963	c.1384C>T	c.(1384-1386)CAC>TAC	p.H462Y	LARGE_uc011amd.1_Missense_Mutation_p.H261Y|LARGE_uc003ane.3_Missense_Mutation_p.H462Y|LARGE_uc010gwp.2_Missense_Mutation_p.H410Y|LARGE_uc011ame.1_Missense_Mutation_p.H394Y|LARGE_uc011amf.1_Missense_Mutation_p.H462Y|LARGE_uc010gwq.1_RNA	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	462	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				TACTCGTAGTGCAGGAAGTAC	0.617000													11	16					0	0	1	0	0	
MYH9	4627	broad.mit.edu	37	22	36718564	36718564	+	Silent	SNP	G	A	A	rs139466141	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:36718564G>A	uc003apg.2	-	6	846	c.615C>T	c.(613-615)GGC>GGT	p.G205G	MYH9_uc003aph.1_Silent_p.G69G	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	205	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GCTCCAGCTCGCCCTGCAAGG	0.667000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				11	21					0	0	1	0	0	
SSTR3	6753	broad.mit.edu	37	22	37603075	37603075	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:37603075C>T	uc003ara.2	-	2	830	c.768G>A	c.(766-768)ACG>ACA	p.T256T	SSTR3_uc003arb.2_Silent_p.T256T	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	256	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						CCACCATGCGCGTGACCCTGC	0.682000													21	42					0	0	1	0	0	
CDC42EP1	11135	broad.mit.edu	37	22	37964270	37964270	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:37964270C>A	uc003asz.3	+	3	1022	c.619C>A	c.(619-621)CTC>ATC	p.L207I		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	207					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					GCCCTCACTCCTCAGCGAGCT	0.662000													15	50					1.33834e-09	1.40184e-09	1	1	0	
PICK1	9463	broad.mit.edu	37	22	38470374	38470374	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:38470374C>T	uc003auq.2	+	12	1285	c.895C>T	c.(895-897)CGC>TGC	p.R299C	PICK1_uc003aur.2_Missense_Mutation_p.R299C|PICK1_uc003aus.2_Missense_Mutation_p.R299C|PICK1_uc003aut.2_Missense_Mutation_p.R299C	NM_012407	NP_036539	Q9NRD5	PICK1_HUMAN	protein interacting with C kinase 1	299	AH.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|DNA methylation involved in embryo development|DNA methylation involved in gamete generation|monoamine transport|neuronal ion channel clustering|protein phosphorylation|receptor clustering|retrograde vesicle-mediated transport, Golgi to ER|synaptic transmission	cell junction|endocytic vesicle membrane|Golgi apparatus|perinuclear region of cytoplasm|presynaptic membrane	ATPase activity|metal ion binding|protein C-terminus binding|protein kinase C binding|receptor binding				0	Melanoma(58;0.045)					CCTGATCCTGCGCTGCCGCCA	0.687000											OREG0026555	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	25					0	0	1	0	0	
DDX17	10521	broad.mit.edu	37	22	38890734	38890734	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:38890734C>T	uc003avy.3	-	8	1218	c.1115G>A	c.(1114-1116)CGT>CAT	p.R372H	DDX17_uc003avx.3_Missense_Mutation_p.R372H|DDX17_uc011anu.1_Missense_Mutation_p.R285H	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	293	Helicase ATP-binding.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					GGTGTAATCACGAAGGAAATC	0.458000													36	100					0	0	1	0	0	
JOSD1	9929	broad.mit.edu	37	22	39085018	39085018	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:39085018C>T	uc003awf.2	-	3	898	c.431G>A	c.(430-432)CGA>CAA	p.R144Q		NM_014876	NP_055691	Q15040	JOS1_HUMAN	Josephin domain containing 1	144	Josephin.						peptidase activity				0	Melanoma(58;0.04)					TCCCACCTCTCGAACACAGAT	0.557000													36	51					0	0	1	0	0	
CACNA1I	8911	broad.mit.edu	37	22	39966799	39966799	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:39966799C>A	uc003ayc.2	+	1	42	c.42C>A	c.(40-42)GCC>GCA	p.A14A	CACNA1I_uc003ayd.2_Silent_p.A14A	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	14	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CTGCAGCAGCCCCAGCCGCTG	0.697000													10	11					2.17888e-05	2.22293e-05	1	1	0	
CACNA1I	8911	broad.mit.edu	37	22	39996631	39996631	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:39996631G>A	uc003ayc.2	+	3	455	c.455G>A	c.(454-456)CGC>CAC	p.R152H	CACNA1I_uc003ayd.2_Missense_Mutation_p.R152H|CACNA1I_uc003aye.2_Missense_Mutation_p.R67H|CACNA1I_uc003ayf.2_Missense_Mutation_p.R67H	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	152	I.|Helical; Name=S3 of repeat I; (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding	p.R152R(1)		breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ACATGGAACCGCCTGGATTTC	0.537000													7	17					0	0	1	0	0	
TNRC6B	23112	broad.mit.edu	37	22	40661673	40661673	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:40661673C>G	uc011aor.1	+	5	1650	c.1439C>G	c.(1438-1440)ACG>AGG	p.T480R	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Missense_Mutation_p.T480R|TNRC6B_uc003ayo.2_Missense_Mutation_p.T284R	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	480					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						AACAGGTCTACGGGTGGGTCC	0.478000													9	21					0	0	1	0	0	
L3MBTL2	83746	broad.mit.edu	37	22	41620173	41620173	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:41620173C>T	uc003azo.2	+	9	1146	c.1092C>T	c.(1090-1092)GAC>GAT	p.D364D	L3MBTL2_uc010gyi.1_Silent_p.D273D|L3MBTL2_uc003azn.2_RNA	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	364	MBT 2.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						ACAGTGACGACGACTTCTGGT	0.612000													15	57					0	0	1	0	0	
L3MBTL2	83746	broad.mit.edu	37	22	41626193	41626193	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:41626193A>G	uc003azo.2	+	17	2110	c.2056A>G	c.(2056-2058)AAG>GAG	p.K686E	L3MBTL2_uc003azn.2_RNA|CHADL_uc003azq.3_Intron|CHADL_uc010gyj.2_Intron	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	686					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						CTCGCCCGACAAGGCTTCAAG	0.582000													10	21					0	0	1	0	0	
ACO2	50	broad.mit.edu	37	22	41923392	41923392	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:41923392C>T	uc003bac.2	+	16	2076	c.2054C>T	c.(2053-2055)GCC>GTC	p.A685V	ACO2_uc003bad.2_Missense_Mutation_p.A710V|POLR3H_uc003bae.2_RNA|POLR3H_uc003baf.2_3'UTR|POLR3H_uc003bag.2_3'UTR|POLR3H_uc003bai.2_3'UTR	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	685					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						GGGGGCCGGGCCATCATCACC	0.617000											OREG0026589	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	39					0	0	1	0	0	
WBP2NL	164684	broad.mit.edu	37	22	42423145	42423145	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:42423145C>T	uc011ape.1	+	7	906	c.890C>T	c.(889-891)GCT>GTT	p.A297V	WBP2NL_uc003bbt.2_Missense_Mutation_p.A297V|WBP2NL_uc011apk.1_Missense_Mutation_p.A169V|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_RNA	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	297					egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						GAAAACGAGGCTTCTCTTCCC	0.522000													30	82					0	0	1	0	0	
NAGA	4668	broad.mit.edu	37	22	42463223	42463223	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:42463223G>A	uc003bbx.2	-	5	533	c.396C>T	c.(394-396)GGC>GGT	p.G132G	NAGA_uc003bby.2_Silent_p.G132G|NAGA_uc003bbw.3_Silent_p.G132G	NM_000262	NP_000253	P17050	NAGAB_HUMAN	alpha-N-acetylgalactosaminidase precursor	132					glycoside catabolic process|glycosylceramide catabolic process|oligosaccharide metabolic process	lysosome	alpha-galactosidase activity|alpha-N-acetylgalactosaminidase activity|cation binding|protein homodimerization activity			central_nervous_system(1)	1						CCAGTGTGGTGCCTGGGTAAC	0.602000													55	98					0	0	1	0	0	
CYP2D7P1	1564	broad.mit.edu	37	22	42538749	42538749	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:42538749G>A	uc003bci.2	-	3	596	c.215C>T	c.(214-216)GCC>GTC	p.A72V	CYP2D7P1_uc003bcg.2_5'Flank|CYP2D7P1_uc003bch.2_5'Flank|CYP2D7P1_uc010gyv.2_Intron|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_Missense_Mutation_p.A72V	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						GGCGAAGGCGGCACAAAGGCA	0.677000													4	9					0	0	1	0	0	
RRP7B	91695	broad.mit.edu	37	22	42972066	42972066	+	RNA	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:42972066G>A	uc003bcs.2	-	6		c.628C>T			RRP7B_uc003bct.2_RNA					Homo sapiens cDNA FLJ90011 fis, clone HEMBA1000443, highly similar to Gastric cancer antigen Zg14.												0						CGCCGGCCCCGGCGGGTCACC	0.667000													3	12					0	0	1	0	0	
PARVG	64098	broad.mit.edu	37	22	44602226	44602226	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:44602226C>G	uc011aqe.1	+	14	1340	c.916C>G	c.(916-918)CTG>GTG	p.L306V	PARVG_uc003bep.2_Missense_Mutation_p.L306V|PARVG_uc011aqf.1_Missense_Mutation_p.L306V|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	306	CH 2.				cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				CAAGAGCACACTGAGGGTGCT	0.532000													6	34					0	0	1	0	0	
FAM118A	55007	broad.mit.edu	37	22	45728354	45728354	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:45728354T>C	uc003bfz.3	+	7	1316	c.700T>C	c.(700-702)TGT>CGT	p.C234R	FAM118A_uc003bga.3_Missense_Mutation_p.C234R|FAM118A_uc011aqr.1_Missense_Mutation_p.C52R	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	234						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		GTTTGTGGGCTGTGGGGAGAC	0.473000													50	106					0	0	1	0	0	
OXTR	5021	broad.mit.edu	37	3	8809680	8809680	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:8809680C>T	uc003brc.2	-	3	816	c.194G>A	c.(193-195)CGC>CAC	p.R65H		NM_000916	NP_000907	P30559	OXYR_HUMAN	oxytocin receptor	65	Cytoplasmic (Potential).				female pregnancy|lactation|muscle contraction	integral to plasma membrane	oxytocin receptor activity|vasopressin receptor activity				0				OV - Ovarian serous cystadenocarcinoma(96;0.15)	Carbetocin(DB01282)	GCGTGTGGTGCGCAGCGCCAG	0.662000													3	8					0	0	1	0	0	
TTLL3	26140	broad.mit.edu	37	3	9870735	9870735	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:9870735A>C	uc003btg.2	+	10	1426	c.1210A>C	c.(1210-1212)AGC>CGC	p.S404R	ARPC4_uc003btc.1_Missense_Mutation_p.S48R|TTLL3_uc003btd.3_Missense_Mutation_p.S371R|TTLL3_uc003btf.3_Missense_Mutation_p.S136R|TTLL3_uc010hco.1_Missense_Mutation_p.S340R|TTLL3_uc003bth.3_Missense_Mutation_p.S192R|TTLL3_uc011atj.1_Missense_Mutation_p.S340R|TTLL3_uc003btj.3_Missense_Mutation_p.S192R|TTLL3_uc003bti.3_Missense_Mutation_p.S192R	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	404	TTL.				axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					CATGTGGTCTAGCCAGAGGTT	0.577000													16	40					0	0	1	0	0	
ATP2B2	491	broad.mit.edu	37	3	10392233	10392233	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:10392233C>T	uc003bvt.2	-	15	2604	c.2165G>A	c.(2164-2166)CGG>CAG	p.R722Q	ATP2B2_uc003bvv.2_Missense_Mutation_p.R677Q|ATP2B2_uc003bvw.2_Missense_Mutation_p.R677Q|ATP2B2_uc010hdo.2_Missense_Mutation_p.R427Q	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	722	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GATGCCTGCCCGCTGGCACTT	0.632000													21	29					0	0	1	0	0	
SYN2	6854	broad.mit.edu	37	3	12187285	12187285	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:12187285A>G	uc003bwm.2	+	8	798	c.634A>G	c.(634-636)AGC>GGC	p.S212G	SYN2_uc003bwl.1_Missense_Mutation_p.S212G	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	212					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGGCCTCCCCAGCATCAACTC	0.552000													28	62					0	0	1	0	0	
FGD5	152273	broad.mit.edu	37	3	14862557	14862557	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:14862557C>T	uc003bzc.2	+	1	2089	c.1979C>T	c.(1978-1980)ACG>ATG	p.T660M	FGD5_uc011avk.1_Missense_Mutation_p.T660M	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	660					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CTGGCACTGACGTTTAAGAAG	0.507000													20	40					0	0	1	0	0	
ANKRD28	23243	broad.mit.edu	37	3	15726870	15726870	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:15726870G>A	uc003caj.1	-	21	2305	c.2162C>T	c.(2161-2163)ACG>ATG	p.T721M	ANKRD28_uc003cai.1_Missense_Mutation_p.T567M|ANKRD28_uc011avz.1_Missense_Mutation_p.T567M|ANKRD28_uc003cak.1_RNA|ANKRD28_uc011awa.1_RNA|ANKRD28_uc003cal.1_Missense_Mutation_p.T751M|ANKRD28_uc003cam.2_Missense_Mutation_p.T754M	NM_015199	NP_056014	O15084	ANR28_HUMAN	ankyrin repeat domain 28	721	ANK 21.					nucleoplasm	protein binding			breast(1)	1						GTGTATAGGCGTCCGGCCCCT	0.473000													41	86					0	0	1	0	0	
PLCL2	23228	broad.mit.edu	37	3	17056204	17056204	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:17056204C>A	uc011awc.1	+	6	2900	c.2795C>A	c.(2794-2796)GCG>GAG	p.A932E	PLCL2_uc011awd.1_Missense_Mutation_p.A814E	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	940					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TAACAGAATGCGGTGGTGTCA	0.453000													28	98					5.45727e-16	5.84447e-16	1	1	0	
KCNH8	131096	broad.mit.edu	37	3	19389422	19389422	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:19389422T>C	uc003cbk.1	+	5	971	c.776T>C	c.(775-777)GTC>GCC	p.V259A	KCNH8_uc011awe.1_Missense_Mutation_p.V259A|KCNH8_uc010hex.1_5'UTR	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	259	Helical; Name=Segment S2; (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						AGCACAACCGTCAGTGACATT	0.403000													36	72					0	0	1	0	0	
LRRC3B	116135	broad.mit.edu	37	3	26751645	26751645	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:26751645C>T	uc003cdp.2	+	2	1071	c.482C>T	c.(481-483)GCG>GTG	p.A161V	LRRC3B_uc003cdq.2_Missense_Mutation_p.A161V	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	161	LRRCT.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						AGGAGCATGGCGTCCAATCAT	0.517000													7	32					0	0	1	0	0	
NEK10	152110	broad.mit.edu	37	3	27152802	27152802	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:27152802G>T	uc010hfk.2	-	17	1645	c.1416C>A	c.(1414-1416)TCC>TCA	p.S472S	NEK10_uc010hfj.2_Silent_p.S415S			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	1160							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						CCCATGGATAGGAATGATACC	0.368000													17	51					2.35188e-11	2.48114e-11	1	1	0	
SLC4A7	9497	broad.mit.edu	37	3	27436549	27436549	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:27436549T>G	uc003cdv.2	-	19	2805	c.2734A>C	c.(2734-2736)ACC>CCC	p.T912P	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.T793P|SLC4A7_uc011aww.1_Missense_Mutation_p.T921P|SLC4A7_uc011awx.1_Missense_Mutation_p.T908P|SLC4A7_uc011awy.1_Missense_Mutation_p.T904P|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.T793P|SLC4A7_uc011axb.1_Missense_Mutation_p.T908P|SLC4A7_uc010hfl.2_Missense_Mutation_p.T462P|SLC4A7_uc003cdw.2_Missense_Mutation_p.T788P	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	912	Helical; (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						ATTAATAAGGTCCACCAAGGA	0.363000													23	67					0	0	1	0	0	
SLC4A7	9497	broad.mit.edu	37	3	27460079	27460079	+	Silent	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:27460079G>C	uc003cdv.2	-	11	1601	c.1530C>G	c.(1528-1530)CTC>CTG	p.L510L	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Silent_p.L391L|SLC4A7_uc011aww.1_Silent_p.L519L|SLC4A7_uc011awx.1_Silent_p.L506L|SLC4A7_uc011awy.1_Silent_p.L502L|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Silent_p.L391L|SLC4A7_uc011axb.1_Silent_p.L506L|SLC4A7_uc010hfl.2_Silent_p.L60L|SLC4A7_uc003cdw.2_Silent_p.L386L	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	510	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						TTCCAGATAAGAGGTCATTTC	0.333000													10	42					0	0	1	0	0	
SLC4A7	9497	broad.mit.edu	37	3	27465559	27465559	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:27465559C>T	uc003cdv.2	-	8	1279	c.1208G>A	c.(1207-1209)AGC>AAC	p.S403N	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.S284N|SLC4A7_uc011aww.1_Missense_Mutation_p.S412N|SLC4A7_uc011awx.1_Missense_Mutation_p.S399N|SLC4A7_uc011awy.1_Missense_Mutation_p.S395N|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.S284N|SLC4A7_uc011axb.1_Missense_Mutation_p.S399N|SLC4A7_uc010hfm.2_Missense_Mutation_p.S284N|SLC4A7_uc010hfl.2_Missense_Mutation_p.A6T|SLC4A7_uc003cdw.2_Missense_Mutation_p.S279N	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	403	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						ATTTTCTCTGCTTCCACCACT	0.353000													13	73					0	0	1	0	0	
GLB1	2720	broad.mit.edu	37	3	33110382	33110382	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:33110382C>T	uc003cfi.1	-	3	443	c.326G>A	c.(325-327)CGG>CAG	p.R109Q	GLB1_uc003cfh.1_Missense_Mutation_p.R79Q|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Missense_Mutation_p.R157Q	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	109					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				ATGAGCCAGCCGAAGAAAATA	0.552000													20	69					0	0	1	0	0	
SUSD5	26032	broad.mit.edu	37	3	33255514	33255514	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:33255514C>T	uc003cfo.1	-	2	614	c.196G>A	c.(196-198)GCT>ACT	p.A66T		NM_015551	NP_056366	O60279	SUSD5_HUMAN	sushi domain containing 5 precursor	66	Extracellular (Potential).|Link.				cell adhesion	integral to membrane	hyaluronic acid binding			ovary(1)|central_nervous_system(1)	2						GCCAGGTGAGCGCCCCTGCTC	0.562000													15	44					0	0	1	0	0	
DCLK3	85443	broad.mit.edu	37	3	36779387	36779387	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:36779387T>C	uc003cgi.2	-	2	1255	c.764A>G	c.(763-765)GAG>GGG	p.E255G		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	255						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CCTCAGCCCCTCCTCTGTGAC	0.582000													48	125					0	0	1	0	0	
ITGA9	3680	broad.mit.edu	37	3	37670704	37670704	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:37670704G>A	uc003chd.2	+	16	1769	c.1716G>A	c.(1714-1716)CCG>CCA	p.P572P	ITGA9_uc003chc.2_Silent_p.P572P	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	572	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TCATCAGCCCGATCGTGTTTG	0.418000													13	48					0	0	1	0	0	
ACAA1	30	broad.mit.edu	37	3	38170828	38170828	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:38170828C>T	uc003cht.2	-	6	705	c.498G>A	c.(496-498)TCG>TCA	p.S166S	ACAA1_uc003chu.2_Intron|ACAA1_uc010hgy.2_Silent_p.S125S|ACAA1_uc010hgz.2_Silent_p.S166S|ACAA1_uc003chv.2_Silent_p.S14S	NM_001607	NP_001598	P09110	THIK_HUMAN	acetyl-Coenzyme A acyltransferase 1 isoform a	166					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy	peroxisomal matrix	acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0523)|Kidney(284;0.0657)		CCATCAAGCGCGAAGTAATAT	0.572000													11	47					0	0	1	0	0	
ACVR2B	93	broad.mit.edu	37	3	38523799	38523799	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:38523799G>A	uc003cif.2	+	9	1209	c.1185G>A	c.(1183-1185)GAG>GAA	p.E395E	ACVR2B_uc003cig.2_Silent_p.E186E	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	395	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		TGCTGTGGGAGCTTGTGTCTC	0.567000													10	31					0	0	1	0	0	
SCN5A	6331	broad.mit.edu	37	3	38592894	38592894	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:38592894G>T	uc003cio.2	-	28	5163	c.4969C>A	c.(4969-4971)CTC>ATC	p.L1657I	SCN5A_uc003cin.2_Missense_Mutation_p.L1656I|SCN5A_uc003cil.3_Missense_Mutation_p.L1657I|SCN5A_uc010hhi.2_Missense_Mutation_p.L1639I|SCN5A_uc010hhk.2_Missense_Mutation_p.L1624I|SCN5A_uc011ayr.1_Missense_Mutation_p.L1603I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1657				L -> P (in Ref. 6; ABR15763/ABR15764).	blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ATGTTGAAGAGGGCAGGCAGG	0.582000													25	121					9.57634e-11	1.00726e-10	1	1	0	
SCN5A	6331	broad.mit.edu	37	3	38671808	38671808	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:38671808A>G	uc003cio.2	-	3	580	c.386T>C	c.(385-387)GTT>GCT	p.V129A	SCN5A_uc003cin.2_Missense_Mutation_p.V129A|SCN5A_uc003cil.3_Missense_Mutation_p.V129A|SCN5A_uc010hhi.2_Missense_Mutation_p.V129A|SCN5A_uc010hhk.2_Missense_Mutation_p.V129A|SCN5A_uc011ayr.1_Missense_Mutation_p.V129A	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	129	Helical; Name=S1 of repeat I; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ATATGAGTGAACCAGAATCTT	0.557000													12	54					0	0	1	0	0	
SCN11A	11280	broad.mit.edu	37	3	38924806	38924806	+	Missense_Mutation	SNP	C	T	T	rs147061364	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:38924806C>T	uc011ays.1	-	18	3336	c.3137G>A	c.(3136-3138)CGG>CAG	p.R1046Q	SCN11A_uc010hhn.1_Missense_Mutation_p.R124Q	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1046					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GCAGGTTTTCCGCAGGTTCCA	0.453000													14	73					0	0	1	0	0	
XIRP1	165904	broad.mit.edu	37	3	39226595	39226595	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:39226595G>A	uc003cjk.1	-	2	4563	c.4342C>T	c.(4342-4344)CAG>TAG	p.Q1448*	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Nonsense_Mutation_p.Q131*	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1448							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TCCATGGGCTGCTCTCCTGAG	0.627000													21	101					0	0	1	0	0	
RPSA	3921	broad.mit.edu	37	3	39453198	39453198	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:39453198G>A	uc003cjp.2	+	5	642	c.557G>A	c.(556-558)CGT>CAT	p.R186H	RPSA_uc003cjq.2_Missense_Mutation_p.R191H|RPSA_uc003cjr.2_Missense_Mutation_p.R186H|RPSA_uc003cjt.2_RNA	NM_002295	NP_002286	P08865	RSSA_HUMAN	ribosomal protein SA	186					cell adhesion|endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|ribosomal small subunit assembly|rRNA export from nucleus|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleus|plasma membrane	protein binding|receptor activity|ribosome binding|structural constituent of ribosome			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		CTGCGCATGCGTGGCACCATT	0.502000													17	62					0	0	1	0	0	
CCBP2	1238	broad.mit.edu	37	3	42906947	42906947	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:42906947G>A	uc003cme.2	+	3	1132	c.953G>A	c.(952-954)CGC>CAC	p.R318H	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmf.2_Missense_Mutation_p.R318H|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	318	Cytoplasmic (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		TCCAGTCACCGCTTCCGCCAG	0.582000													36	78					0	0	1	0	0	
ZNF35	7584	broad.mit.edu	37	3	44692631	44692631	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:44692631A>G	uc003cnq.2	+	2	293	c.72A>G	c.(70-72)GAA>GAG	p.E24E	ZNF35_uc003cnr.2_5'UTR	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	24	Globular domain.|Poly-Glu.				cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		AGGAGGAGGAAGAAGAAGAAA	0.537000													21	39					0	0	1	0	0	
KIF15	56992	broad.mit.edu	37	3	44893702	44893702	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:44893702G>C	uc003cnx.3	+	34	4124	c.3975G>C	c.(3973-3975)GAG>GAC	p.E1325D	KIF15_uc010hiq.2_Missense_Mutation_p.E1228D|KIF15_uc010hir.2_Missense_Mutation_p.E373D	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	1325	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		ACCTGCAGGAGATGGAAATGT	0.413000													11	35					0	0	1	0	0	
ALS2CL	259173	broad.mit.edu	37	3	46722846	46722846	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:46722846G>A	uc003cqa.1	-	13	1516	c.1326C>T	c.(1324-1326)CAC>CAT	p.H442H	ALS2CL_uc003cpz.1_Translation_Start_Site|ALS2CL_uc003cqb.1_Silent_p.H442H|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	442	MORN 4.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		CCCCAAATCCGTGCCGCAGGC	0.647000													42	66					0	0	1	0	0	
NBEAL2	23218	broad.mit.edu	37	3	47049819	47049819	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:47049819C>T	uc003cqp.2	+	51	7945	c.7766C>T	c.(7765-7767)GCG>GTG	p.A2589V	NBEAL2_uc010hjm.1_Missense_Mutation_p.A1966V|NBEAL2_uc010hjn.1_Missense_Mutation_p.A955V|NBEAL2_uc010hjo.1_Missense_Mutation_p.A149V	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	2589	WD 4.						binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		CAGTTTGTAGCGGCACTACGG	0.582000													9	11					0	0	1	0	0	
PTPN23	25930	broad.mit.edu	37	3	47449901	47449901	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:47449901C>T	uc003crf.1	+	15	1347	c.1251C>T	c.(1249-1251)ATC>ATT	p.I417I	PTPN23_uc011baw.1_Silent_p.I382I|PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Silent_p.I287I	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	417					cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ACAGCCACATCCCACCCCAGC	0.597000													16	46					0	0	1	0	0	
COL7A1	1294	broad.mit.edu	37	3	48608692	48608692	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:48608692C>T	uc003ctz.2	-	92	7089	c.7088G>A	c.(7087-7089)GGA>GAA	p.G2363E		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2363	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ACCTTTGGGTCCTGGAGCCCC	0.527000													7	24					0	0	1	0	0	
COL7A1	1294	broad.mit.edu	37	3	48630567	48630567	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:48630567G>A	uc003ctz.2	-	5	651	c.650C>T	c.(649-651)ACG>ATG	p.T217M		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	217	Nonhelical region (NC1).				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ACCAGCAGTCGTGCACACTCT	0.592000													16	25					0	0	1	0	0	
CELSR3	1951	broad.mit.edu	37	3	48694579	48694579	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:48694579G>A	uc003cul.2	-	2	4232	c.3951C>T	c.(3949-3951)AAC>AAT	p.N1317N	CELSR3_uc003cuf.1_Silent_p.N1387N	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1317	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CGTCTGTGTCGTTCTGGATGT	0.667000													13	24					0	0	1	0	0	
IMPDH2	3615	broad.mit.edu	37	3	49064248	49064248	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:49064248G>A	uc003cvt.2	-	7	783	c.691C>T	c.(691-693)CGG>TGG	p.R231W		NM_000884	NP_000875	P12268	IMDH2_HUMAN	inosine monophosphate dehydrogenase 2	231	CBS 2.				GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	IMP dehydrogenase activity|metal ion binding|nucleotide binding|protein binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)	GGGTAGTCCCGATTCTTCTTC	0.517000													41	107					0	0	1	0	0	
MST1	4485	broad.mit.edu	37	3	49724498	49724498	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:49724498C>T	uc003cxg.2	-	6	682	c.610G>A	c.(610-612)GCG>ACG	p.A204T	MST1_uc011bcs.1_Missense_Mutation_p.A204T|MST1_uc010hkx.2_Missense_Mutation_p.A125T|MST1_uc011bct.1_Missense_Mutation_p.A204T|MST1_uc011bcu.1_RNA|RNF123_uc003cxh.2_5'Flank	NM_020998	NP_066278	P26927	HGFL_HUMAN	macrophage stimulating 1 (hepatocyte growth	190					proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CAGACACACGCGGCTGGAGAC	0.657000													13	40					0	0	1	0	0	
SLC38A3	10991	broad.mit.edu	37	3	50253036	50253036	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:50253036C>T	uc003cyn.3	+	6	575	c.434C>T	c.(433-435)GCA>GTA	p.A145V	SLC38A3_uc011bdl.1_Missense_Mutation_p.A120V|SLC38A3_uc011bdm.1_Missense_Mutation_p.A76V	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	145	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	AAGCTGGCAGCAGCCCTGGCC	0.622000													11	26					0	0	1	0	0	
HYAL2	8692	broad.mit.edu	37	3	50355798	50355798	+	Missense_Mutation	SNP	C	T	T	rs143678537		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:50355798C>T	uc003czu.2	-	4	1404	c.1184G>A	c.(1183-1185)CGC>CAC	p.R395H	HYAL2_uc003czx.2_Missense_Mutation_p.R395H|HYAL2_uc003czv.2_Missense_Mutation_p.R395H|HYAL2_uc003czw.2_Missense_Mutation_p.R395H	NM_033158	NP_149348	Q12891	HYAL2_HUMAN	hyaluronoglucosaminidase 2 precursor	395	EGF-like.					anchored to membrane|lysosome|plasma membrane	hyalurononglucosaminidase activity|receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)	Hyaluronidase(DB00070)	AGGCACTAGGCGGAAACTGTT	0.632000													12	46					0	0	1	0	0	
GRM2	2912	broad.mit.edu	37	3	51749521	51749521	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:51749521G>A	uc010hlv.2	+	4	1971	c.1732G>A	c.(1732-1734)GGT>AGT	p.G578S	GRM2_uc003dbo.3_5'UTR|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	578	Helical; Name=1; (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CGCCTGCCTCGGTGCCCTGGC	0.642000													14	47					0	0	1	0	0	
DNAH1	25981	broad.mit.edu	37	3	52406352	52406352	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:52406352G>A	uc011bef.1	+	43	7037	c.6776G>A	c.(6775-6777)CGC>CAC	p.R2259H		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2259	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TTCTCAGCCCGCACTTCAGCC	0.592000													20	20					0	0	1	0	0	
BAP1	8314	broad.mit.edu	37	3	52442054	52442054	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:52442054C>T	uc003ddx.2	-	5	410	c.295G>A	c.(295-297)GTG>ATG	p.V99M	PHF7_uc003ddy.2_5'Flank|PHF7_uc003ddz.2_5'Flank	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	99					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		TTCAGGAGCACGCTCAGCAAG	0.557000			N|Mis|F|S|O		uveal melanoma|breast|NSCLC								7	15					0	0	1	0	0	
ITIH4	3700	broad.mit.edu	37	3	52861195	52861195	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:52861195G>T	uc003dfz.2	-	3	306	c.270C>A	c.(268-270)ACC>ACA	p.T90T	ITIH4_uc011bel.1_5'Flank|ITIH4_uc003dfy.2_5'Flank|ITIH4_uc011bem.1_Silent_p.T90T|ITIH4_uc011ben.1_Silent_p.T90T	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	90	VIT.				acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		TCCCTGGGTAGGTCATGCCAT	0.612000													12	44					7.03913e-09	7.34698e-09	1	1	0	
CHDH	55349	broad.mit.edu	37	3	53852023	53852023	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:53852023G>A	uc003dgz.2	-	9	2006	c.1566C>T	c.(1564-1566)TCC>TCT	p.S522S		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	522					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	CAGTGGGATCGGAGGGCTGGC	0.592000													28	74					0	0	1	0	0	
CACNA2D3	55799	broad.mit.edu	37	3	54933814	54933814	+	Splice_Site	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:54933814G>T	uc003dhf.2	+	27	2417	c.2369_splice	c.e27-1	p.G790_splice	CACNA2D3_uc003dhg.1_Splice_Site_p.G696_splice|CACNA2D3_uc003dhh.1_Splice_Site|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha							integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TCTTTTCACAGGACCAGTCAA	0.388000													5	13					0.000602214	0.000609462	1	1	0	
ERC2	26059	broad.mit.edu	37	3	56052950	56052950	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:56052950G>A	uc003dhr.1	-	8	2007	c.1751C>T	c.(1750-1752)GCG>GTG	p.A584V	ERC2_uc003dht.1_Missense_Mutation_p.A55V	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	584	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CTCTAGCGTCGCCAGTGCAGT	0.468000													18	35					0	0	1	0	0	
CADPS	8618	broad.mit.edu	37	3	62501777	62501777	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:62501777C>T	uc003dll.2	-	16	2898	c.2538G>A	c.(2536-2538)GCG>GCA	p.A846A	CADPS_uc003dlk.1_Silent_p.A350A|CADPS_uc003dlm.2_Silent_p.A846A|CADPS_uc003dln.2_Silent_p.A829A	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	846	Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AGTTGACTAACGCAGCCTGTT	0.438000													22	62					0	0	1	0	0	
PRICKLE2	166336	broad.mit.edu	37	3	64138947	64138947	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:64138947C>T	uc003dmf.2	-	6	1284	c.698G>A	c.(697-699)CGC>CAC	p.R233H		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	233	LIM zinc-binding 2.					cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		CATGATGTAGCGCTGGCCGCC	0.507000													38	81					0	0	1	0	0	
ADAMTS9	56999	broad.mit.edu	37	3	64526832	64526832	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:64526832C>T	uc003dmg.2	-	36	5492	c.5460G>A	c.(5458-5460)ACG>ACA	p.T1820T	ADAMTS9_uc011bfo.1_Silent_p.T1792T|ADAMTS9_uc011bfp.1_Silent_p.T731T	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1820	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		ACCCAGCGGCCGTGTAATCCT	0.463000													20	65					0	0	1	0	0	
FRMD4B	23150	broad.mit.edu	37	3	69299230	69299230	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:69299230G>A	uc003dnv.2	-	6	812	c.522C>T	c.(520-522)AGC>AGT	p.S174S	FRMD4B_uc003dnw.2_Intron|FRMD4B_uc003dnx.1_Silent_p.S120S|FRMD4B_uc011bga.1_Silent_p.S18S	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B	174	FERM.					cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		AGATGGTTTCGCTCTCTACTT	0.438000													44	185					0	0	1	0	0	
MITF	4286	broad.mit.edu	37	3	70005622	70005622	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:70005622A>C	uc003dnz.2	+	8	1070	c.954A>C	c.(952-954)AGA>AGC	p.R318S	MITF_uc011bgb.1_Missense_Mutation_p.R266S|MITF_uc003doa.2_Missense_Mutation_p.R317S|MITF_uc003dob.2_Missense_Mutation_p.R302S|MITF_uc003dod.2_Missense_Mutation_p.R293S|MITF_uc003doe.2_Missense_Mutation_p.R211S|MITF_uc003dof.2_Missense_Mutation_p.R217S	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	324	Basic motif.		Missing (in WS2A).		melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		GAAGAAGAAGATTTAACATAA	0.363000			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						12	39					0	0	1	0	0	
PDZRN3	23024	broad.mit.edu	37	3	73432578	73432578	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:73432578C>T	uc003dpl.1	-	10	3235	c.3139G>A	c.(3139-3141)GGC>AGC	p.G1047S	PDZRN3_uc011bgh.1_Missense_Mutation_p.G704S|PDZRN3_uc010hoe.1_Missense_Mutation_p.G745S|PDZRN3_uc011bgf.1_Missense_Mutation_p.G764S|PDZRN3_uc011bgg.1_Missense_Mutation_p.G767S	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	1047							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		GATTTTGTGCCGTGGGTTAAG	0.408000													68	210					0	0	1	0	0	
PROS1	5627	broad.mit.edu	37	3	93619652	93619652	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:93619652A>G	uc003drb.3	-	7	1064	c.723T>C	c.(721-723)TGT>TGC	p.C241C	PROS1_uc010hoo.2_Silent_p.C110C|PROS1_uc003dqz.3_Silent_p.C110C	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	241	EGF-like 3; calcium-binding (Potential).		C -> S (in PROS1D).		leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	TCCTACCTTCACAAGACTTTG	0.433000													15	71					0	0	1	0	0	
GABRR3	200959	broad.mit.edu	37	3	97705698	97705698	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:97705698C>T	uc011bgr.1	-	9	1233	c.1233G>A	c.(1231-1233)TCG>TCA	p.S411S		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	411	Cytoplasmic (Potential).|Interaction with SQSTM1 (By similarity).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						GGCTGCATATCGATTTTCTTC	0.433000													3	20					0	0	1	0	0	
OR5H15	403274	broad.mit.edu	37	3	97887908	97887908	+	Missense_Mutation	SNP	G	A	A	rs147604293	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:97887908G>A	uc011bgu.1	+	1	365	c.365G>A	c.(364-366)CGC>CAC	p.R122H		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GCATATGATCGCTATGTAGCC	0.373000													53	158					0	0	1	0	0	
FILIP1L	11259	broad.mit.edu	37	3	99567819	99567819	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:99567819G>A	uc003dtm.2	-	5	3164	c.2701C>T	c.(2701-2703)CCA>TCA	p.P901S	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.P901S|FILIP1L_uc010hpf.2_Missense_Mutation_p.P477S|FILIP1L_uc010hpg.2_Missense_Mutation_p.P661S|FILIP1L_uc003dtn.2_Missense_Mutation_p.P661S|FILIP1L_uc003dtp.1_Missense_Mutation_p.P661S	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	901						cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						ATATGAAGTGGCTGCCCAGGT	0.463000													72	265					0	0	1	0	0	
FILIP1L	11259	broad.mit.edu	37	3	99569276	99569276	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:99569276A>G	uc003dtm.2	-	5	1707	c.1244T>C	c.(1243-1245)CTA>CCA	p.L415P	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.L415P|FILIP1L_uc010hpf.2_Intron|FILIP1L_uc010hpg.2_Missense_Mutation_p.L175P|FILIP1L_uc003dtn.2_Missense_Mutation_p.L175P|FILIP1L_uc003dtp.1_Missense_Mutation_p.L175P	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	415	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						TTCAACCTCTAGTTTAAAGTC	0.373000													44	156					0	0	1	0	0	
ABI3BP	25890	broad.mit.edu	37	3	100567662	100567662	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:100567662G>A	uc003dun.2	-	16	1518	c.1433C>T	c.(1432-1434)CCG>CTG	p.P478L	ABI3BP_uc003duo.2_Missense_Mutation_p.P520L|ABI3BP_uc011bhd.1_5'Flank|ABI3BP_uc003dum.2_5'Flank	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	478	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GGTTCTTGGCGGTTTGGGCCG	0.353000													9	47					0	0	1	0	0	
ABI3BP	25890	broad.mit.edu	37	3	100593724	100593724	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:100593724G>T	uc003dun.2	-	9	977	c.892C>A	c.(892-894)CTA>ATA	p.L298I	ABI3BP_uc003duo.2_Missense_Mutation_p.L291I|ABI3BP_uc003dup.3_Missense_Mutation_p.L291I	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	298						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						TCAAACATTAGGGATGCAGGA	0.353000													4	10					1.23904e-05	1.26775e-05	1	1	0	
GUCA1C	9626	broad.mit.edu	37	3	108672475	108672475	+	Silent	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:108672475A>T	uc003dxj.2	-	1	203	c.135T>A	c.(133-135)GGT>GGA	p.G45G	GUCA1C_uc003dxk.2_Silent_p.G45G	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	45	EF-hand 1.				signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						GACCTTGCAGACCCAAAAGTG	0.368000													7	144					0	0	1	0	0	
PHLDB2	90102	broad.mit.edu	37	3	111603433	111603433	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:111603433G>A	uc010hqa.2	+	2	920	c.509G>A	c.(508-510)CGG>CAG	p.R170Q	PHLDB2_uc003dyc.2_Missense_Mutation_p.R197Q|PHLDB2_uc003dyd.2_Missense_Mutation_p.R170Q|PHLDB2_uc003dyg.2_Missense_Mutation_p.R170Q|PHLDB2_uc003dyh.2_Missense_Mutation_p.R170Q|PHLDB2_uc003dye.3_Missense_Mutation_p.R170Q|PHLDB2_uc003dyf.3_Missense_Mutation_p.R170Q	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	170						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						CTGGAAGGTCGGAAGGCATCT	0.547000													27	85					0	0	1	0	0	
PHLDB2	90102	broad.mit.edu	37	3	111604167	111604167	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:111604167A>G	uc010hqa.2	+	2	1654	c.1243A>G	c.(1243-1245)AGT>GGT	p.S415G	PHLDB2_uc003dyc.2_Missense_Mutation_p.S442G|PHLDB2_uc003dyd.2_Missense_Mutation_p.S415G|PHLDB2_uc003dyg.2_Missense_Mutation_p.S415G|PHLDB2_uc003dyh.2_Missense_Mutation_p.S415G|PHLDB2_uc003dye.3_Missense_Mutation_p.S415G|PHLDB2_uc003dyf.3_Missense_Mutation_p.S415G	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	415						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						ACGGAAAAGCAGTATTAGCTC	0.517000													23	92					0	0	1	0	0	
CD200	4345	broad.mit.edu	37	3	112063825	112063825	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:112063825G>A	uc003dyw.2	+	4	330	c.186G>A	c.(184-186)CAG>CAA	p.Q62Q	CD200_uc010hqd.1_5'UTR|CD200_uc003dyx.2_Silent_p.Q37Q|CD200_uc003dyy.2_5'UTR|CD200_uc003dyz.2_5'UTR	NM_001004196	NP_001004196	P41217	OX2G_HUMAN	CD200 antigen isoform b	37	Ig-like V-type.|Extracellular (Potential).				regulation of immune response	integral to plasma membrane					0		Acute lymphoblastic leukemia(4;1.7e-08)|all_hematologic(4;8.82e-05)				TGGTGACCCAGGATGAAAGAG	0.363000													15	53					0	0	1	0	0	
BOC	91653	broad.mit.edu	37	3	112993431	112993431	+	Missense_Mutation	SNP	C	T	T	rs138233485		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:112993431C>T	uc003dzx.2	+	9	2065	c.1444C>T	c.(1444-1446)CGC>TGC	p.R482C	BOC_uc003dzy.2_Missense_Mutation_p.R482C|BOC_uc003dzz.2_Missense_Mutation_p.R482C|BOC_uc003eab.2_Missense_Mutation_p.R183C	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	482	Fibronectin type-III 1.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			CAGCTCGCCCCGCACCTCCAA	0.652000													16	40					0	0	1	0	0	
KIAA2018	205717	broad.mit.edu	37	3	113378335	113378335	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:113378335T>C	uc003eam.2	-	7	2605	c.2194A>G	c.(2194-2196)AGC>GGC	p.S732G	KIAA2018_uc003eal.2_Missense_Mutation_p.S676G	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	732					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GCAGGCTGGCTAATAGACAAT	0.438000													23	96					0	0	1	0	0	
QTRTD1	79691	broad.mit.edu	37	3	113795748	113795748	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:113795748G>A	uc003eay.2	+	7	935	c.705G>A	c.(703-705)TTG>TTA	p.L235L	QTRTD1_uc003eaz.2_Silent_p.L247L|QTRTD1_uc011biq.1_Silent_p.L112L|QTRTD1_uc011bir.1_Silent_p.L129L|QTRTD1_uc003eba.2_Silent_p.L112L	NM_024638	NP_078914	Q9H974	QTRD1_HUMAN	queuine tRNA-ribosyltransferase domain	235					queuosine biosynthetic process	mitochondrion	metal ion binding|queuine tRNA-ribosyltransferase activity			central_nervous_system(1)|skin(1)	2						GACTACGCTTGCTGTCATCAG	0.587000													13	38					0	0	1	0	0	
ARHGAP31	57514	broad.mit.edu	37	3	119120749	119120749	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:119120749G>A	uc003ecj.3	+	10	1682	c.1150G>A	c.(1150-1152)GGC>AGC	p.G384S		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	384					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GCACTCCACCGGCACCGGCAG	0.532000													15	71					0	0	1	0	0	
ARHGAP31	57514	broad.mit.edu	37	3	119121085	119121085	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:119121085C>A	uc003ecj.3	+	10	2018	c.1486C>A	c.(1486-1488)CTC>ATC	p.L496I		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	496					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						ATCTGTGCCGCTCCGCGTGTC	0.592000													26	63					3.1745e-13	3.37314e-13	1	1	0	
ADPRH	141	broad.mit.edu	37	3	119305260	119305260	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:119305260C>A	uc003ecs.2	+	4	725	c.427C>A	c.(427-429)CCA>ACA	p.P143T	ADPRH_uc010hqv.2_Missense_Mutation_p.P143T|ADPRH_uc011bjb.1_Missense_Mutation_p.P36T|ADPRH_uc003ect.2_Missense_Mutation_p.P143T	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	143					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		TCTCAGGTTCCCACACCATAG	0.622000													41	161					9.62906e-15	1.02749e-14	1	1	0	
CD86	942	broad.mit.edu	37	3	121828232	121828232	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:121828232G>A	uc003eet.2	+	5	940	c.824G>A	c.(823-825)CGG>CAG	p.R275Q	CD86_uc011bjo.1_Missense_Mutation_p.R193Q|CD86_uc011bjp.1_Missense_Mutation_p.R163Q|CD86_uc003eeu.2_Missense_Mutation_p.R269Q	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	275	Cytoplasmic (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	AAGAAGAAGCGGCCTCGCAAC	0.473000													40	143					0	0	1	0	0	
SEMA5B	54437	broad.mit.edu	37	3	122658273	122658273	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:122658273T>C	uc003efz.1	-	5	777	c.473A>G	c.(472-474)CAG>CGG	p.Q158R	SEMA5B_uc011bju.1_Missense_Mutation_p.Q100R|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.Q158R|SEMA5B_uc010hro.1_Missense_Mutation_p.Q100R|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	158	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		CAATCGTACCTGAAGAAGAGA	0.502000													13	41					0	0	1	0	0	
MYLK	4638	broad.mit.edu	37	3	123452835	123452835	+	Silent	SNP	C	T	T	rs143682943		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:123452835C>T	uc003ego.2	-	10	1290	c.1008G>A	c.(1006-1008)CCG>CCA	p.P336P	MYLK_uc011bjw.1_Silent_p.P336P|MYLK_uc003egp.2_Silent_p.P336P|MYLK_uc003egq.2_Silent_p.P336P|MYLK_uc003egr.2_Silent_p.P336P|MYLK_uc003egs.2_Silent_p.P160P	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	336					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCTGAAGGACCGGGGTCTGCG	0.637000													25	75					0	0	1	0	0	
ZNF148	7707	broad.mit.edu	37	3	124951658	124951658	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:124951658G>A	uc003ehx.3	-	9	2398	c.1912C>T	c.(1912-1914)CCA>TCA	p.P638S	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.P638S|ZNF148_uc010hsa.2_Missense_Mutation_p.P638S|ZNF148_uc003eia.3_Missense_Mutation_p.P638S|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	638					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						GGCTGATTTGGGAGGGTCTGG	0.453000													66	241					0	0	1	0	0	
UROC1	131669	broad.mit.edu	37	3	126219563	126219563	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:126219563C>T	uc003eiz.1	-	11	1152	c.1120G>A	c.(1120-1122)GTG>ATG	p.V374M	UROC1_uc010hsi.1_Missense_Mutation_p.V434M	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	374					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		TCCTTGAACACAGCAGGGTTG	0.582000													21	119					0	0	1	0	0	
UROC1	131669	broad.mit.edu	37	3	126226631	126226631	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:126226631A>G	uc003eiz.1	-	6	588	c.556T>C	c.(556-558)TCC>CCC	p.S186P	UROC1_uc010hsi.1_Missense_Mutation_p.S186P	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	186					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		GTCCGGGAGGAGTAGTTGGGA	0.562000													39	85					0	0	1	0	0	
PLXNA1	5361	broad.mit.edu	37	3	126736719	126736719	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:126736719G>A	uc003ejg.2	+	18	3579	c.3575G>A	c.(3574-3576)GGG>GAG	p.G1192E		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1215	Extracellular (Potential).|IPT/TIG 4.				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		AACCTCACTGGGCAGCACAAG	0.657000													16	32					0	0	1	0	0	
ABTB1	80325	broad.mit.edu	37	3	127396615	127396615	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:127396615G>A	uc003ejt.2	+	10	1046	c.958G>A	c.(958-960)GTC>ATC	p.V320I	ABTB1_uc003ejr.2_Missense_Mutation_p.V178I|ABTB1_uc003ejs.2_Missense_Mutation_p.V295I|ABTB1_uc003eju.2_Missense_Mutation_p.V178I|ABTB1_uc010hsm.2_Missense_Mutation_p.V47I	NM_172027	NP_742024	Q969K4	ABTB1_HUMAN	ankyrin repeat and BTB (POZ) domain containing 1	320	BTB 2.					cytoplasm|nucleolus|plasma membrane	translation elongation factor activity				0						CCCCCCAGCCGTCACCCTGCA	0.632000													4	15					0	0	1	0	0	
RPN1	6184	broad.mit.edu	37	3	128344800	128344800	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:128344800A>G	uc003ekr.1	-	7	1268	c.1192T>C	c.(1192-1194)TAC>CAC	p.Y398H	RPN1_uc011bkq.1_Missense_Mutation_p.Y226H	NM_002950	NP_002941	P04843	RPN1_HUMAN	ribophorin I precursor	398	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|melanosome|oligosaccharyltransferase complex|rough microsome	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(114;0.189)		AGATAGGTGTAGTGCAGCTCA	0.458000			T	EVI1	AML								22	61					0	0	1	0	0	
ACAD9	28976	broad.mit.edu	37	3	128603583	128603583	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:128603583G>A	uc003ela.3	+	2	440	c.238G>A	c.(238-240)GAA>AAA	p.E80K	ACAD9_uc010hsw.1_Intron|ACAD9_uc011bks.1_5'UTR|ACAD9_uc003elb.2_Intron	NM_014049	NP_054768	Q9H845	ACAD9_HUMAN	acyl-Coenzyme A dehydrogenase family, member 9	80						mitochondrion	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding			ovary(2)|central_nervous_system(1)	3						ATTCTTCACTGAAGAGGGTAT	0.343000													26	77					0	0	1	0	0	
ACAD9	28976	broad.mit.edu	37	3	128612407	128612407	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:128612407G>A	uc003ela.3	+	3	456	c.254G>A	c.(253-255)CGA>CAA	p.R85Q	ACAD9_uc010hsw.1_5'UTR|ACAD9_uc011bks.1_5'UTR|ACAD9_uc003elb.2_5'UTR	NM_014049	NP_054768	Q9H845	ACAD9_HUMAN	acyl-Coenzyme A dehydrogenase family, member 9	85						mitochondrion	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding			ovary(2)|central_nervous_system(1)	3						GTGGACTCCCGAAAAATTGAC	0.358000													13	40					0	0	1	0	0	
C3orf37	56941	broad.mit.edu	37	3	129023513	129023513	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:129023513C>T	uc003elt.2	+	7	998	c.910C>T	c.(910-912)CCT>TCT	p.P304S	C3orf37_uc003elu.2_Missense_Mutation_p.P262S|C3orf37_uc003elv.2_Missense_Mutation_p.P304S|C3orf37_uc003elw.2_Missense_Mutation_p.P304S	NM_020187	NP_064572	Q96FZ2	CC037_HUMAN	hypothetical protein LOC56941	304										ovary(1)	1						CTCAAAAACACCTCAAAAGGA	0.507000													36	88					0	0	1	0	0	
COL6A6	131873	broad.mit.edu	37	3	130284028	130284028	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:130284028C>T	uc010htl.2	+	3	883	c.852C>T	c.(850-852)AGC>AGT	p.S284S		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	284	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATTCACTGAGCATGGGCATAA	0.448000													32	112					0	0	1	0	0	
ATP2C1	27032	broad.mit.edu	37	3	130660493	130660493	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:130660493G>A	uc003enl.2	+	8	703	c.481G>A	c.(481-483)GTT>ATT	p.V161I	ATP2C1_uc011blg.1_Missense_Mutation_p.V195I|ATP2C1_uc011blh.1_Missense_Mutation_p.V156I|ATP2C1_uc011bli.1_Missense_Mutation_p.V195I|ATP2C1_uc003enk.2_Missense_Mutation_p.V145I|ATP2C1_uc003enm.2_Missense_Mutation_p.V161I|ATP2C1_uc003enn.2_Missense_Mutation_p.V145I|ATP2C1_uc003eno.2_Missense_Mutation_p.V161I|ATP2C1_uc003enp.2_Missense_Mutation_p.V161I|ATP2C1_uc003enq.2_Missense_Mutation_p.V161I|ATP2C1_uc003enr.2_Missense_Mutation_p.V161I|ATP2C1_uc003ens.2_Missense_Mutation_p.V161I|ATP2C1_uc003ent.2_Missense_Mutation_p.V161I	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	161	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	AGGTGATACAGTTTGCCTTTC	0.388000									Hailey-Hailey_disease				14	63					0	0	1	0	0	
ACAD11	84129	broad.mit.edu	37	3	132277865	132277865	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:132277865C>T	uc003eov.3	-	20	2673	c.2293G>A	c.(2293-2295)GCA>ACA	p.A765T		NM_032169	NP_115545	Q709F0	ACD11_HUMAN	putative acyl-CoA dehydrogenase	765						peroxisome	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|transferase activity, transferring phosphorus-containing groups			ovary(1)	1						TCCATTGTTGCGATTGCTGAA	0.468000													18	48					0	0	1	0	0	
CCRL1	51554	broad.mit.edu	37	3	132320091	132320091	+	Missense_Mutation	SNP	G	A	A	rs139794831		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:132320091G>A	uc003eow.2	+	2	933	c.850G>A	c.(850-852)GCC>ACC	p.A284T	ACAD11_uc003eov.3_Intron|ACAD11_uc011blr.1_Intron|CCRL1_uc003eox.2_Missense_Mutation_p.A284T	NM_016557	NP_057641	Q9NPB9	CCRL1_HUMAN	chemokine (C-C motif) receptor-like 1	284	Extracellular (Potential).				chemotaxis|immune response	integral to plasma membrane	C-C chemokine receptor activity				0						CATGGACATCGCCATCCAAGT	0.443000													52	141					0	0	1	0	0	
C3orf36	80111	broad.mit.edu	37	3	133647304	133647304	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:133647304C>T	uc003epz.1	-	1	1353	c.344G>A	c.(343-345)TGC>TAC	p.C115Y		NM_025041	NP_079317	Q3SXR2	CC036_HUMAN	hypothetical protein LOC80111	115										ovary(1)	1						TGAGAGGGCGCAGAGTGGGTG	0.657000													7	15					0	0	1	0	0	
CEP63	80254	broad.mit.edu	37	3	134256014	134256014	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:134256014G>A	uc003eqo.1	+	7	908	c.459G>A	c.(457-459)TCG>TCA	p.S153S	CEP63_uc003eql.1_Silent_p.S153S|CEP63_uc003eqm.2_Silent_p.S153S|CEP63_uc003eqn.1_Silent_p.S153S	NM_025180	NP_079456	Q96MT8	CEP63_HUMAN	centrosomal protein 63 isoform a	153	Potential.				cell division|DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitosis|signal transduction in response to DNA damage|spindle assembly	centrosome|cytosol|spindle pole	protein binding			ovary(1)	1						GTCAGAAATCGCTGGACTGGG	0.443000													20	84					0	0	1	0	0	
DZIP1L	199221	broad.mit.edu	37	3	137822592	137822592	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:137822592G>T	uc003erq.2	-	2	585	c.222C>A	c.(220-222)CGC>CGA	p.R74R	DZIP1L_uc003err.1_Silent_p.R74R	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	74						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						GCTGCCCACAGCGGCTGCACA	0.617000													8	32					5.18039e-06	5.31276e-06	1	1	0	
MRPS22	56945	broad.mit.edu	37	3	139074583	139074583	+	Missense_Mutation	SNP	C	T	T	rs147932653	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:139074583C>T	uc003etb.2	+	7	946	c.938C>T	c.(937-939)TCG>TTG	p.S313L	MRPS22_uc003etc.2_RNA|MRPS22_uc003etd.2_Missense_Mutation_p.S312L|MRPS22_uc003ete.2_Missense_Mutation_p.S272L	NM_020191	NP_064576	P82650	RT22_HUMAN	mitochondrial ribosomal protein S22	313						mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome			ovary(2)|skin(1)	3						GATGGCCAGTCGGCTCAAGGG	0.433000													8	44					0	0	1	0	0	
RASA2	5922	broad.mit.edu	37	3	141327408	141327408	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:141327408C>T	uc003etz.1	+	21	2094	c.2094C>T	c.(2092-2094)GAC>GAT	p.D698D	RASA2_uc010huq.1_Silent_p.D702D|RASA2_uc003eua.1_Silent_p.D699D	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	698	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						AATGGATAGACGTACTCTGCA	0.423000													22	81					0	0	1	0	0	
XRN1	54464	broad.mit.edu	37	3	142051254	142051254	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:142051254A>G	uc003eus.2	-	36	4249	c.4182T>C	c.(4180-4182)TAT>TAC	p.Y1394Y	XRN1_uc010huu.2_Silent_p.Y861Y|XRN1_uc003eut.2_Silent_p.Y1394Y|XRN1_uc003euu.2_Silent_p.Y1395Y	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1394					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						AGGGTAATCCATATTCATCTC	0.289000													27	67					0	0	1	0	0	
PAQR9	344838	broad.mit.edu	37	3	142681341	142681341	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:142681341G>A	uc003evg.2	-	1	838	c.838C>T	c.(838-840)CGC>TGC	p.R280C	PAQR9_uc003evf.1_RNA	NM_198504	NP_940906	Q6ZVX9	PAQR9_HUMAN	progestin and adipoQ receptor family member IX	280	Extracellular (Potential).					integral to membrane	receptor activity				0						CAGAAGTAGCGGCGGTAGAAG	0.607000													25	61					0	0	1	0	0	
ZIC4	84107	broad.mit.edu	37	3	147114080	147114080	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:147114080C>T	uc003ewd.1	-	3	520	c.247G>A	c.(247-249)GCG>ACG	p.A83T	ZIC4_uc003ewc.1_Missense_Mutation_p.A13T|ZIC4_uc011bno.1_Missense_Mutation_p.A133T	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	83						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						CTGCGGGCCGCAGGCCCTGGC	0.716000													9	23					0	0	1	0	0	
CP	1356	broad.mit.edu	37	3	148916275	148916275	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:148916275T>C	uc003ewy.3	-	9	1845	c.1592A>G	c.(1591-1593)GAT>GGT	p.D531G	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Missense_Mutation_p.D312G|CP_uc003ewz.2_Missense_Mutation_p.D531G|CP_uc010hvf.1_Missense_Mutation_p.D257G	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	531	Plastocyanin-like 3.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	ACACACAGGATCTGCATTAGT	0.448000													17	50					0	0	1	0	0	
IGSF10	285313	broad.mit.edu	37	3	151161036	151161036	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:151161036C>T	uc011bod.1	-	5	5699	c.5699G>A	c.(5698-5700)GGG>GAG	p.G1900E	IGSF10_uc011bob.1_5'Flank|IGSF10_uc011boc.1_5'Flank	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1900	Ig-like C2-type 5.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATACAAAGTCCCATTTGAAAA	0.433000													28	90					0	0	1	0	0	
PPM1L	151742	broad.mit.edu	37	3	160786870	160786870	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:160786870T>C	uc003fdr.2	+	4	1109	c.1008T>C	c.(1006-1008)TTT>TTC	p.F336F	PPM1L_uc003fds.2_Silent_p.F157F|PPM1L_uc003fdt.2_Silent_p.F209F|PPM1L_uc010hwf.2_RNA	NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	336	Cytoplasmic (Potential).|PP2C-like.				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			TACAGTCATTTTACAGAGGCT	0.468000													23	59					0	0	1	0	0	
SI	6476	broad.mit.edu	37	3	164755741	164755741	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:164755741A>G	uc003fei.2	-	21	2435	c.2373T>C	c.(2371-2373)CTT>CTC	p.L791L		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	791	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AACCTCCTCTAAGATGTAATC	0.328000										HNSCC(35;0.089)			15	42					0	0	1	0	0	
FNDC3B	64778	broad.mit.edu	37	3	172115243	172115243	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:172115243T>C	uc003fhy.2	+	26	3765	c.3593T>C	c.(3592-3594)TTA>TCA	p.L1198S	FNDC3B_uc003fhz.3_Missense_Mutation_p.L1198S	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	1198	Helical; (Potential).					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		GCCTTTATATTACAGTACTTC	0.343000													20	45					0	0	1	0	0	
GHSR	2693	broad.mit.edu	37	3	172166194	172166194	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:172166194C>T	uc003fib.1	-	1	10	c.10G>A	c.(10-12)GCG>ACG	p.A4T	GHSR_uc011bpv.1_Missense_Mutation_p.A4T	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	4	Extracellular (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CTGGGCGTCGCGTTCCACATG	0.682000													6	14					0	0	1	0	0	
SOX2	6657	broad.mit.edu	37	3	181430415	181430415	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:181430415G>A	uc003fkx.2	+	1	694	c.267G>A	c.(265-267)CCG>CCA	p.P89P	SOX2OT_uc003fkv.2_Intron|SOX2OT_uc003fkw.3_Intron	NM_003106	NP_003097	P48431	SOX2_HUMAN	sex-determining region Y-box 2	89	HMG box.				cell cycle arrest|chromatin organization|eye development|glial cell fate commitment|inner ear development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell proliferation|negative regulation of neuron differentiation|osteoblast differentiation|pituitary gland development|positive regulation of MAPKKK cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of caspase activity|response to growth factor stimulus|response to wounding|somatic stem cell maintenance	cytosol|transcription factor complex	miRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0	all_cancers(143;1.22e-16)|Ovarian(172;0.0283)		all cancers(12;1.82e-48)|Epithelial(37;9.85e-40)|OV - Ovarian serous cystadenocarcinoma(80;7.37e-23)|Lung(8;2.01e-21)|GBM - Glioblastoma multiforme(1;2.13e-08)			AGAAGCGGCCGTTCATCGACG	0.597000			A		NSCLC|oesophageal squamous carcinoma		MICROPHTHALMIA AND ESOPHAGEAL ATRESIA SYNDROME						15	26					0	0	1	0	0	
ATP11B	23200	broad.mit.edu	37	3	182614514	182614514	+	Silent	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:182614514T>G	uc003flb.2	+	26	3266	c.3009T>G	c.(3007-3009)ACT>ACG	p.T1003T	ATP11B_uc003flc.2_Silent_p.T587T|ATP11B_uc010hxf.1_Silent_p.T165T|ATP11B_uc010hxg.2_5'Flank|ATP11B_uc010hxh.1_5'Flank	NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	ATPase, class VI, type 11B	1003	Helical; (Potential).				aminophospholipid transport|ATP biosynthetic process	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			CATTTGGCACTTTGGTCTTCA	0.318000													61	139					0	0	1	0	0	
MCCC1	56922	broad.mit.edu	37	3	182735069	182735069	+	Silent	SNP	G	A	A	rs150305281		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:182735069G>A	uc003fle.2	-	18	2171	c.2034C>T	c.(2032-2034)ATC>ATT	p.I678I	MCCC1_uc010hxi.2_RNA|MCCC1_uc011bqo.1_RNA|MCCC1_uc003flf.2_Silent_p.I561I|MCCC1_uc003flg.2_Silent_p.I569I	NM_020166	NP_064551	Q96RQ3	MCCA_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	678	Biotinyl-binding.				biotin metabolic process|leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.84e-14)|Ovarian(172;0.0355)		all cancers(12;1.8e-44)|Epithelial(37;3.23e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;5.07e-21)		Biotin(DB00121)	TCTTCATGGCGATCATAACCA	0.378000													58	123					0	0	1	0	0	
KLHL6	89857	broad.mit.edu	37	3	183273230	183273230	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:183273230A>G	uc003flr.2	-	1	270	c.212T>C	c.(211-213)CTG>CCG	p.L71P	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Missense_Mutation_p.L69P	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	71										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GACATCTGTCAGAGCGTTTTC	0.502000													52	100					0	0	1	0	0	
ABCC5	10057	broad.mit.edu	37	3	183667870	183667870	+	Silent	SNP	G	A	A	rs111257210		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:183667870G>A	uc003fmg.2	-	21	3153	c.2988C>T	c.(2986-2988)AAC>AAT	p.N996N	ABCC5_uc011bqt.1_Silent_p.N524N|ABCC5_uc010hxl.2_Silent_p.N996N	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	996	ABC transmembrane type-1 2.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CCAGGATAACGTTCTGGATGA	0.502000													11	26					0	0	1	0	0	
HTR3E	285242	broad.mit.edu	37	3	183824131	183824131	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:183824131G>A	uc010hxq.2	+	8	1607	c.1141G>A	c.(1141-1143)GGT>AGT	p.G381S	HTR3E_uc003fml.3_Missense_Mutation_p.G366S|HTR3E_uc003fmm.2_Missense_Mutation_p.G396S|HTR3E_uc010hxr.2_Missense_Mutation_p.G407S|HTR3E_uc003fmn.2_Missense_Mutation_p.G381S	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	381	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CCACCTGCCCGGTGAGGGAAG	0.448000													5	11					0	0	1	0	0	
EIF4G1	1981	broad.mit.edu	37	3	184044406	184044406	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:184044406C>A	uc003fnp.2	+	22	3512	c.3314C>A	c.(3313-3315)CCC>CAC	p.P1105H	EIF4G1_uc003fnt.2_Missense_Mutation_p.P816H|EIF4G1_uc003fnq.2_Missense_Mutation_p.P1018H|EIF4G1_uc003fnr.2_Missense_Mutation_p.P941H|EIF4G1_uc010hxx.2_Missense_Mutation_p.P1112H|EIF4G1_uc003fns.2_Missense_Mutation_p.P1065H|EIF4G1_uc010hxy.2_Missense_Mutation_p.P1112H|EIF4G1_uc003fnv.3_Missense_Mutation_p.P1106H|EIF4G1_uc003fnu.3_Missense_Mutation_p.P1105H|EIF4G1_uc003fnw.2_Missense_Mutation_p.P1112H|EIF4G1_uc003fnx.2_Missense_Mutation_p.P910H|EIF4G1_uc003fny.3_Missense_Mutation_p.P909H|EIF4G1_uc003foa.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	1105					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGAGCCAAGCCCTCAGACGCA	0.587000													14	31					0.000151284	0.000153722	1	1	0	
TPRG1	285386	broad.mit.edu	37	3	189038562	189038562	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:189038562C>T	uc003frv.1	+	11	2008	c.781C>T	c.(781-783)CGC>TGC	p.R261C	TPRG1_uc003frw.1_Missense_Mutation_p.R261C	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	261											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		CATTGGAAACCGCAACAAACT	0.408000													8	28					0	0	1	0	0	
UTS2D	257313	broad.mit.edu	37	3	190995910	190995910	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:190995910C>T	uc003fsu.2	-	6	940	c.153G>A	c.(151-153)TTG>TTA	p.L51L		NM_198152	NP_937795	Q765I0	UTS2B_HUMAN	urotensin 2 domain containing precursor	51						extracellular region	hormone activity				0	all_cancers(143;1.77e-09)|Ovarian(172;0.103)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000214)		GTAGAGCCAGCAATAGTTCCT	0.269000													4	14					0	0	1	0	0	
MUC4	4585	broad.mit.edu	37	3	195498560	195498560	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:195498560G>A	uc011bto.1	-	6	13281	c.12821C>T	c.(12820-12822)GCT>GTT	p.A4274V	MUC4_uc003fuz.2_Silent_p.L82L|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Missense_Mutation_p.A143V|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Missense_Mutation_p.A143V|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Missense_Mutation_p.A166V|MUC4_uc003fvp.2_Missense_Mutation_p.A115V|MUC4_uc010hzu.1_Missense_Mutation_p.A1014V	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1159	NIDO.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GGAGAAGTCAGCATCGTCCCA	0.592000													18	25					0	0	1	0	0	
RNF168	165918	broad.mit.edu	37	3	196199488	196199488	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:196199488G>A	uc003fwq.2	-	6	1456	c.918C>T	c.(916-918)GCC>GCT	p.A306A	RNF168_uc010iah.2_Silent_p.A139A|uc010iag.1_5'Flank	NM_152617	NP_689830	Q8IYW5	RN168_HUMAN	ring finger protein 168	306					double-strand break repair|histone H2A K63-linked ubiquitination|positive regulation of DNA repair|response to ionizing radiation	nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;5.25e-24)|all cancers(36;5.47e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00348)		GGTACCATTCGGCACCACAGG	0.458000													17	54					0	0	1	0	0	
KIAA0226	9711	broad.mit.edu	37	3	197444928	197444928	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:197444928C>T	uc003fyc.2	-	2	322	c.139G>A	c.(139-141)GTC>ATC	p.V47I	KIAA0226_uc003fyd.3_5'UTR|KIAA0226_uc003fyf.2_Intron|KIAA0226_uc003fyg.2_Missense_Mutation_p.V40I	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	47					autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		TTAGACCAGACGTTGGGGCTG	0.527000													24	43					0	0	1	0	0	
PDE6B	5158	broad.mit.edu	37	4	656917	656917	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:656917G>A	uc003gap.2	+	15	1914	c.1861G>A	c.(1861-1863)GGC>AGC	p.G621S	PDE6B_uc003gao.3_Missense_Mutation_p.G621S|PDE6B_uc011buy.1_Missense_Mutation_p.G342S|PDE6B_uc011buz.1_Missense_Mutation_p.G53S	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	621					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						TAAGCTCCACGGCTCCTCGAT	0.642000													12	31					0	0	1	0	0	
SLC26A1	10861	broad.mit.edu	37	4	985310	985310	+	Missense_Mutation	SNP	C	T	T	rs138449255	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:985310C>T	uc003gcb.2	-	3	560	c.182G>A	c.(181-183)CGT>CAT	p.R61H	SLC26A1_uc003gbx.2_Missense_Mutation_p.R61H|IDUA_uc003gby.2_Intron|IDUA_uc003gbz.2_Intron|IDUA_uc003gca.2_Intron|SLC26A1_uc003gcc.2_Missense_Mutation_p.R61H	NM_213613	NP_998778	Q9H2B4	S26A1_HUMAN	solute carrier family 26, member 1 isoform a	61						integral to membrane|plasma membrane	secondary active sulfate transmembrane transporter activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GCGGTACTGACGCAGCCAGCG	0.677000													9	43					0	0	1	0	0	
CRIPAK	285464	broad.mit.edu	37	4	1389215	1389215	+	Nonsense_Mutation	SNP	C	T	T	rs112507956	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:1389215C>T	uc003gdf.2	+	1	3876	c.916C>T	c.(916-918)CGA>TGA	p.R306*		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	306					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			TCACACGTGCCGACGTGGAGT	0.667000													26	175					0	0	1	0	0	
POLN	353497	broad.mit.edu	37	4	2181141	2181141	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:2181141G>T	uc003ger.2	-	6	1073	c.1073C>A	c.(1072-1074)CCT>CAT	p.P358H	POLN_uc010ich.1_Intron|POLN_uc011bvi.1_Missense_Mutation_p.P358H	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	358					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			GGCATCACTAGGATCTATAAG	0.363000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					22	35					3.8784e-16	4.15611e-16	1	1	0	
POLN	353497	broad.mit.edu	37	4	2230912	2230912	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:2230912G>A	uc003ger.2	-	1	47	c.47C>T	c.(46-48)CCG>CTG	p.P16L	POLN_uc011bvi.1_Missense_Mutation_p.P16L|HAUS3_uc011bvj.1_Intron|HAUS3_uc003ges.1_3'UTR|HAUS3_uc003get.1_3'UTR	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	16					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			ACTGGAGAGCGGTGTATTACA	0.343000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					35	88					0	0	1	0	0	
RGS12	6002	broad.mit.edu	37	4	3318853	3318853	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:3318853C>T	uc003ggw.2	+	2	1860	c.956C>T	c.(955-957)ACG>ATG	p.T319M	RGS12_uc003ggu.2_Missense_Mutation_p.T319M|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.T319M|RGS12_uc003ggx.1_Missense_Mutation_p.T319M	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	319	PID.					condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ACCATGCAGACGAATGACGAC	0.622000													25	92					0	0	1	0	0	
STK32B	55351	broad.mit.edu	37	4	5461854	5461854	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:5461854C>T	uc003gih.1	+	9	872	c.808C>T	c.(808-810)CGC>TGC	p.R270C	STK32B_uc010ida.1_Missense_Mutation_p.R223C	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	270	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						TCCTGAGAGCCGCGTGTCCAG	0.567000											OREG0016061	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	42					0	0	1	0	0	
EVC2	132884	broad.mit.edu	37	4	5624499	5624499	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:5624499T>C	uc003gij.2	-	14	2320	c.2266A>G	c.(2266-2268)AAC>GAC	p.N756D	EVC2_uc011bwb.1_Missense_Mutation_p.N196D|EVC2_uc003gik.2_Missense_Mutation_p.N676D	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	756	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						ATGGCTGAGTTCTGCAGGCGC	0.652000													10	38					0	0	1	0	0	
JAKMIP1	152789	broad.mit.edu	37	4	6043924	6043924	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:6043924C>T	uc010idb.1	-	17	2545	c.2059G>A	c.(2059-2061)GCC>ACC	p.A687T	JAKMIP1_uc010idc.1_Missense_Mutation_p.A502T|JAKMIP1_uc010idd.1_Intron	NM_001099433	NP_001092903	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TGGGTCAGGGCGGCCTCGGTC	0.542000													11	57					0	0	1	0	0	
MAN2B2	23324	broad.mit.edu	37	4	6606969	6606969	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:6606969C>T	uc003gjf.1	+	11	1763	c.1727C>T	c.(1726-1728)GCG>GTG	p.A576V	MAN2B2_uc003gje.1_Missense_Mutation_p.A576V|MAN2B2_uc011bwf.1_Missense_Mutation_p.A525V	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	576					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						ACCAGCCATGCGGGCAGGTAC	0.622000													24	50					0	0	1	0	0	
C1QTNF7	114905	broad.mit.edu	37	4	15444274	15444274	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:15444274C>T	uc011bxb.1	+	3	948	c.721C>T	c.(721-723)CCA>TCA	p.P241S	C1QTNF7_uc003gno.2_Missense_Mutation_p.P248S|C1QTNF7_uc003gnp.2_Missense_Mutation_p.P241S	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	241	C1q.					collagen					0						CTATCTGCAGCCAGAAGATGA	0.498000													36	82					0	0	1	0	0	
CC2D2A	57545	broad.mit.edu	37	4	15572057	15572057	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:15572057A>G	uc010idv.2	+	29	3777	c.3532A>G	c.(3532-3534)ATT>GTT	p.I1178V	CC2D2A_uc003gnx.2_Missense_Mutation_p.I1129V|CC2D2A_uc003gnz.1_RNA|CC2D2A_uc003goa.1_RNA	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	1178					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						CCATACTCGTATTGAGAGACA	0.408000													4	11					0	0	1	0	0	
DCAF16	54876	broad.mit.edu	37	4	17805513	17805513	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:17805513G>A	uc003gpn.2	-	3	1313	c.252C>T	c.(250-252)AGC>AGT	p.S84S	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	84						CUL4 RING ubiquitin ligase complex				ovary(1)	1						GGACTGGTGTGCTTGGATCCA	0.448000													23	79					0	0	1	0	0	
SLIT2	9353	broad.mit.edu	37	4	20525728	20525728	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:20525728C>T	uc003gpr.1	+	14	1570	c.1366C>T	c.(1366-1368)CGT>TGT	p.R456C	SLIT2_uc003gps.1_Missense_Mutation_p.R456C	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	456	LRRCT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CAGTGGTGCCCGTTGCACCAG	0.488000													33	97					0	0	1	0	0	
SEL1L3	23231	broad.mit.edu	37	4	25806253	25806253	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:25806253C>T	uc003gru.3	-	10	1838	c.1686G>A	c.(1684-1686)ACG>ACA	p.T562T	SEL1L3_uc003grv.2_5'UTR	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	562						integral to membrane	binding				0						AGCTGGAATCCGTCAGAAAGG	0.438000													11	23					0	0	1	0	0	
TBC1D1	23216	broad.mit.edu	37	4	38138782	38138782	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:38138782T>C	uc003gtb.2	+	20	3676	c.3333T>C	c.(3331-3333)CTT>CTC	p.L1111L	TBC1D1_uc011byd.1_Silent_p.L1102L|TBC1D1_uc010ifd.2_Silent_p.L898L|TBC1D1_uc003gtd.2_Silent_p.L123L	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	1111						nucleus	Rab GTPase activator activity			ovary(1)	1						TCCAAAGCCTTGAGGCCACCA	0.532000													19	48					0	0	1	0	0	
RFC1	5981	broad.mit.edu	37	4	39318611	39318611	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:39318611C>T	uc003gty.1	-	10	1261	c.1127G>A	c.(1126-1128)CGC>CAC	p.R376H	RFC1_uc003gtx.1_Missense_Mutation_p.R376H	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	376					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						ATAATTAGTGCGTTTCTTTTC	0.388000													16	35					0	0	1	0	0	
KLB	152831	broad.mit.edu	37	4	39408649	39408649	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:39408649G>T	uc003gua.2	+	1	177	c.80G>T	c.(79-81)AGG>ATG	p.R27M	KLB_uc011byj.1_Missense_Mutation_p.R27M	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	27	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						ACACGCTATAGGAATACAATG	0.473000													21	47					3.51602e-12	3.72036e-12	1	1	0	
DCAF4L1	285429	broad.mit.edu	37	4	41984733	41984733	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:41984733C>T	uc003gwk.2	+	1	1021	c.924C>T	c.(922-924)TAC>TAT	p.Y308Y		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	308										skin(1)	1						TAAGGCAGTACGAAGGTCACG	0.532000													30	64					0	0	1	0	0	
ATP8A1	10396	broad.mit.edu	37	4	42414995	42414995	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:42414995C>T	uc003gwr.2	-	37	3665	c.3433G>A	c.(3433-3435)GTT>ATT	p.V1145I	ATP8A1_uc003gwq.2_Missense_Mutation_p.V371I|ATP8A1_uc003gws.2_Missense_Mutation_p.V1130I	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1145	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GACTGTGAAACGATTCCATTT	0.438000													11	27					0	0	1	0	0	
GABRA4	2557	broad.mit.edu	37	4	46967009	46967009	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:46967009T>G	uc003gxg.2	-	8	1251	c.1112A>C	c.(1111-1113)AAG>ACG	p.K371T		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	371	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTCAGGATGCTTCTCTCTCTG	0.428000													10	55					0	0	1	0	0	
GABRA4	2557	broad.mit.edu	37	4	46995418	46995418	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:46995418G>A	uc003gxg.2	-	1	163	c.24C>T	c.(22-24)CCC>CCT	p.P8P		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	8					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GAGCGATCGCGGGTACCTTCT	0.592000													24	67					0	0	1	0	0	
CORIN	10699	broad.mit.edu	37	4	47663848	47663848	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:47663848G>A	uc003gxm.2	-	12	1708	c.1615C>T	c.(1615-1617)CGC>TGC	p.R539C	CORIN_uc011bzf.1_Missense_Mutation_p.R400C|CORIN_uc011bzg.1_Missense_Mutation_p.R472C|CORIN_uc011bzh.1_Missense_Mutation_p.R502C|CORIN_uc011bzi.1_Missense_Mutation_p.R502C	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	539	Extracellular (Potential).|FZ 2.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GACTCACAGCGTTCTTTAGAG	0.413000													13	28					0	0	1	0	0	
CWH43	80157	broad.mit.edu	37	4	49063827	49063827	+	Splice_Site	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:49063827A>T	uc003gyv.2	+	16	2204	c.2022_splice	c.e16-2	p.R674_splice	CWH43_uc011bzl.1_Splice_Site_p.R647_splice	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog						GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						ttatttttttaGATTTGGATC	0.234000													12	16					0	0	1	0	0	
SPATA18	132671	broad.mit.edu	37	4	52938115	52938115	+	Missense_Mutation	SNP	G	A	A	rs142158631		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:52938115G>A	uc003gzl.2	+	6	829	c.551G>A	c.(550-552)CGC>CAC	p.R184H	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.R152H|SPATA18_uc003gzk.1_Missense_Mutation_p.R184H	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	184	Potential.				mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			GAGGATGCCCGCCACAGAAAC	0.383000													10	15					0	0	1	0	0	
POLR2B	5431	broad.mit.edu	37	4	57897132	57897132	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:57897132C>T	uc003hcl.1	+	25	3546	c.3503C>T	c.(3502-3504)GCA>GTA	p.A1168V	POLR2B_uc011cae.1_Missense_Mutation_p.A1161V|POLR2B_uc011caf.1_Missense_Mutation_p.A1093V|POLR2B_uc003hcm.1_Missense_Mutation_p.A661V	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	1168					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					ATGAGTATTGCACCGCGAATG	0.333000													12	23					0	0	1	0	0	
MUC7	4589	broad.mit.edu	37	4	71347244	71347244	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:71347244A>G	uc011cat.1	+	4	1071	c.783A>G	c.(781-783)CCA>CCG	p.P261P	MUC7_uc011cau.1_Silent_p.P261P|MUC7_uc003hfj.2_Silent_p.P261P|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	261	Thr-rich.|5.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CAGCTGTCCCACCCACACCTT	0.597000													23	103					0	0	1	0	0	
AMBN	258	broad.mit.edu	37	4	71472425	71472425	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:71472425C>T	uc003hfl.2	+	13	1397	c.1322C>T	c.(1321-1323)GCA>GTA	p.A441V		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	441					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			ATGCATGACGCATGGCATTTC	0.488000													12	18					0	0	1	0	0	
USO1	8615	broad.mit.edu	37	4	76695832	76695832	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:76695832G>A	uc003hiu.2	+	7	734	c.559G>A	c.(559-561)GTC>ATC	p.V187I	USO1_uc003hiv.2_Missense_Mutation_p.V22I|USO1_uc003hiw.2_Missense_Mutation_p.V22I	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	187	Globular head.|ARM 3.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCTATAGGGCGTCTTACTACT	0.299000													16	20					0	0	1	0	0	
FRAS1	80144	broad.mit.edu	37	4	79400610	79400610	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:79400610A>G	uc003hlb.2	+	56	8621	c.8181A>G	c.(8179-8181)TCA>TCG	p.S2727S		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2722	Extracellular (Potential).|Calx-beta 2.				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTCTAGAATCAGGCTCTGATT	0.458000													16	5					0	0	1	0	0	
C4orf36	132989	broad.mit.edu	37	4	87808944	87808944	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:87808944G>A	uc003hqe.3	-	4	636	c.323C>T	c.(322-324)GCC>GTC	p.A108V		NM_144645	NP_653246	Q96KX1	CD036_HUMAN	hypothetical protein LOC132989	108											0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00141)		TCTCAAACCGGCTGGCCTTTC	0.428000													20	22					0	0	1	0	0	
MANBA	4126	broad.mit.edu	37	4	103595217	103595217	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:103595217C>T	uc003hwg.2	-	8	1071	c.971G>A	c.(970-972)AGG>AAG	p.R324K	MANBA_uc011ces.1_Missense_Mutation_p.R267K	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	324					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		TTCCACTGTCCTAAAATAAAC	0.294000													11	33					0	0	1	0	0	
TACR3	6870	broad.mit.edu	37	4	104512789	104512789	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:104512789G>A	uc003hxe.1	-	4	1083	c.940C>T	c.(940-942)CCC>TCC	p.P314S		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	314	Helical; Name=6; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		ATATGATAGGGCAGCCAGCAG	0.343000													18	19					0	0	1	0	0	
HADH	3033	broad.mit.edu	37	4	108935649	108935649	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:108935649C>T	uc003hyq.2	+	3	473	c.324C>T	c.(322-324)TCC>TCT	p.S108S	HADH_uc010ilx.2_Silent_p.S108S|HADH_uc010ily.2_Intron|HADH_uc003hyr.2_Silent_p.S112S	NM_005327	NP_005318	Q16836	HCDH_HUMAN	L-3-hydroxyacyl-Coenzyme A dehydrogenase	108					fatty acid beta-oxidation	mitochondrial matrix	3-hydroxyacyl-CoA dehydrogenase activity|NAD+ binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000168)	NADH(DB00157)	ATGCAGCCTCCGTTGTCCACA	0.532000													10	84					0	0	1	0	0	
ALPK1	80216	broad.mit.edu	37	4	113333097	113333097	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:113333097G>A	uc003iap.3	+	5	670	c.391G>A	c.(391-393)GCC>ACC	p.A131T	ALPK1_uc011cfw.1_RNA|ALPK1_uc003ian.3_Missense_Mutation_p.A131T|ALPK1_uc011cfx.1_Missense_Mutation_p.A53T|ALPK1_uc003iao.3_RNA|ALPK1_uc003iaq.2_Missense_Mutation_p.A75T|ALPK1_uc010imo.2_5'UTR|ALPK1_uc003iar.2_Missense_Mutation_p.A101T	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	131							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		TCTGCAGGTCGCCAAAGGTCT	0.597000													4	26					0	0	1	0	0	
NDST4	64579	broad.mit.edu	37	4	115998005	115998005	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:115998005A>G	uc003ibu.2	-	2	867	c.188T>C	c.(187-189)ATG>ACG	p.M63T	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	63	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TTTCAGCTCCATTGACCTATA	0.413000													23	26					0	0	1	0	0	
BBS12	166379	broad.mit.edu	37	4	123663688	123663688	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:123663688G>A	uc003ieu.2	+	2	834	c.641G>A	c.(640-642)CGA>CAA	p.R214Q		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	214					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						AACACATCACGAACTCTGAAA	0.398000									Bardet-Biedl_syndrome				39	37					0	0	1	0	0	
PCDH10	57575	broad.mit.edu	37	4	134072881	134072881	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:134072881G>A	uc003iha.2	+	1	2412	c.1586G>A	c.(1585-1587)CGC>CAC	p.R529H	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.R529H	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	529	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TACGCCCTGCGCTCCTTCGAC	0.577000													32	49					0	0	1	0	0	
TIGD4	201798	broad.mit.edu	37	4	153691554	153691554	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:153691554G>A	uc003imy.2	-	2	1385	c.603C>T	c.(601-603)GGC>GGT	p.G201G		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	201	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					AACATGTTTCGCCTTTAAATG	0.343000													43	58					0	0	1	0	0	
FSTL5	56884	broad.mit.edu	37	4	162459350	162459350	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:162459350G>T	uc003iqh.2	-	10	1716	c.1280C>A	c.(1279-1281)TCT>TAT	p.S427Y	FSTL5_uc003iqi.2_Missense_Mutation_p.S426Y|FSTL5_uc010iqv.2_Missense_Mutation_p.S426Y	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	427						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CACAAAAAGAGAAGAGATGTC	0.408000													52	80					2.47907e-22	2.68921e-22	1	1	0	
NPY1R	4886	broad.mit.edu	37	4	164247331	164247331	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:164247331C>T	uc003iqm.1	-	2	642	c.376G>A	c.(376-378)GTG>ATG	p.V126M	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	126	Helical; Name=3; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AAAATGGACACAGTGATTGAA	0.428000													40	37					0	0	1	0	0	
SAP30	8819	broad.mit.edu	37	4	174294658	174294658	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:174294658A>G	uc003itd.2	+	2	674	c.433A>G	c.(433-435)ACC>GCC	p.T145A		NM_003864	NP_003855	O75446	SAP30_HUMAN	Sin3A-associated protein, 30kDa	145	Interaction with SIN3A (By similarity).				transcription, DNA-dependent	histone deacetylase complex	DNA binding|metal ion binding|protein binding|transcription corepressor activity			ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.15e-17)|Epithelial(43;4.33e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.62e-09)|STAD - Stomach adenocarcinoma(60;0.00278)|GBM - Glioblastoma multiforme(59;0.00659)|LUSC - Lung squamous cell carcinoma(193;0.0919)		AGATATTGATACCCCAGAGGT	0.323000													49	47					0	0	1	0	0	
WDR17	116966	broad.mit.edu	37	4	177082120	177082120	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:177082120A>G	uc003iuj.2	+	21	2945	c.2789A>G	c.(2788-2790)TAT>TGT	p.Y930C	WDR17_uc003iuk.2_Missense_Mutation_p.Y906C|WDR17_uc003ium.3_Missense_Mutation_p.Y906C|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.Y149C	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	930										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		GGAGCTTCATATTCTGATGAT	0.343000													20	16					0	0	1	0	0	
WDR17	116966	broad.mit.edu	37	4	177098716	177098716	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:177098716G>A	uc003iuj.2	+	30	3916	c.3760G>A	c.(3760-3762)GGA>AGA	p.G1254R	WDR17_uc003iuk.2_Missense_Mutation_p.G1230R|WDR17_uc003ium.3_Missense_Mutation_p.G1215R|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.G465R	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	1254										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		GTCACTGAAAGGAATTATTGG	0.343000													31	44					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187518870	187518870	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:187518870C>T	uc003izf.2	-	24	12522	c.12334G>A	c.(12334-12336)GTT>ATT	p.V4112I	FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_5'Flank	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4112	Extracellular (Potential).|EGF-like 4.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CACTGACAAACGGCGCCATCC	0.428000										HNSCC(5;0.00058)			7	15					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187532624	187532624	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:187532624G>A	uc003izf.2	-	14	9957	c.9769C>T	c.(9769-9771)CGG>TGG	p.R3257W		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3257	Extracellular (Potential).|Cadherin 30.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TCAATATCCCGACTTGCTGCA	0.408000										HNSCC(5;0.00058)			15	27					0	0	1	0	0	
BRD9	65980	broad.mit.edu	37	5	881252	881252	+	Missense_Mutation	SNP	C	T	T	rs145491306		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:881252C>T	uc003jbq.2	-	9	1179	c.1012G>A	c.(1012-1014)GTG>ATG	p.V338M	BRD9_uc003jbl.2_Missense_Mutation_p.V222M|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Missense_Mutation_p.V285M|BRD9_uc003jbo.2_Missense_Mutation_p.V242M|BRD9_uc003jbp.2_Intron|BRD9_uc011cmc.1_Intron	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	338							nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			GTGTTGACCACGCTGTAGAGC	0.607000													9	18					0	0	1	0	0	
BRD9	65980	broad.mit.edu	37	5	884147	884147	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:884147G>A	uc003jbq.2	-	8	1039	c.872C>T	c.(871-873)ACG>ATG	p.T291M	BRD9_uc003jbl.2_Missense_Mutation_p.T175M|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Missense_Mutation_p.T238M|BRD9_uc003jbo.2_Missense_Mutation_p.T195M|BRD9_uc003jbp.2_5'Flank|BRD9_uc011cmc.1_RNA	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	291							nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			GGTACTGTCCGTCAAGCTGCA	0.632000													10	31					0	0	1	0	0	
IRX2	153572	broad.mit.edu	37	5	2748586	2748586	+	Silent	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:2748586A>C	uc003jda.2	-	3	1478	c.1236T>G	c.(1234-1236)TCT>TCG	p.S412S	IRX2_uc003jdb.2_Silent_p.S412S	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	412						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		CCGCGGCCGCAGAGTTGTACC	0.711000													5	8					0	0	1	0	0	
IRX1	79192	broad.mit.edu	37	5	3599762	3599762	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:3599762G>A	uc003jde.2	+	2	752	c.700G>A	c.(700-702)GAC>AAC	p.D234N		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	234						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						TGACAAGATCGACGAGCACGA	0.647000													10	30					0	0	1	0	0	
ADAMTS16	170690	broad.mit.edu	37	5	5306817	5306817	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:5306817C>A	uc003jdl.2	+	21	3525	c.3387C>A	c.(3385-3387)AGC>AGA	p.S1129R		NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1129	TSP type-1 6.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CGAGGGGCAGCTGGTTTGCCT	0.687000													3	15					0.004672	0.00470665	1	1	0	
NSUN2	54888	broad.mit.edu	37	5	6600045	6600045	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:6600045G>A	uc003jdu.2	-	19	2363	c.2298C>T	c.(2296-2298)CCC>CCT	p.P766P	NSUN2_uc003jds.2_Silent_p.P212P|NSUN2_uc003jdt.2_Silent_p.P530P|NSUN2_uc011cmk.1_Silent_p.P731P|NSUN2_uc003jdv.2_Silent_p.P530P	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	766						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						CTGCTCACCGGGGTGGATGGA	0.627000													37	67					0	0	1	0	0	
SRD5A1	6715	broad.mit.edu	37	5	6663023	6663023	+	Silent	SNP	G	A	A	rs144186538		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:6663023G>A	uc003jdw.2	+	4	847	c.657G>A	c.(655-657)GCG>GCA	p.A219A	SRD5A1_uc011cml.1_RNA|SRD5A1_uc011cmm.1_Silent_p.A172A	NM_001047	NP_001038	P18405	S5A1_HUMAN	steroid-5-alpha-reductase 1	219	Helical; (Potential).				androgen biosynthetic process|cell differentiation|sex determination|sex differentiation	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|electron carrier activity				0					Dutasteride(DB01126)|Finasteride(DB01216)	TCCAAGGCGCGGCTTTTGCTT	0.408000													27	54					0	0	1	0	0	
ADCY2	108	broad.mit.edu	37	5	7706929	7706929	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:7706929C>T	uc003jdz.1	+	8	1249	c.1182C>T	c.(1180-1182)GGC>GGT	p.G394G	ADCY2_uc011cmo.1_Silent_p.G214G	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	394	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TCCTGTGTGGCGTGATTGGTC	0.507000													38	76					0	0	1	0	0	
MTRR	4552	broad.mit.edu	37	5	7889244	7889244	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:7889244A>G	uc003jed.2	+	9	1294	c.1264A>G	c.(1264-1266)AGT>GGT	p.S422G	MTRR_uc003jee.3_Missense_Mutation_p.S395G|MTRR_uc003jef.3_RNA|MTRR_uc003jeg.3_RNA|MTRR_uc010ito.2_RNA	NM_024010	NP_076915	Q9UBK8	MTRR_HUMAN	methionine synthase reductase isoform 2	422	FAD-binding FR-type.				methionine biosynthetic process	cytosol	[methionine synthase] reductase activity|flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding			ovary(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)|L-Methionine(DB00134)	TACCAGTGACAGTGCTGAAAA	0.483000													14	35					0	0	1	0	0	
SEMA5A	9037	broad.mit.edu	37	5	9122889	9122889	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:9122889G>A	uc003jek.2	-	14	2372	c.1660C>T	c.(1660-1662)CAC>TAC	p.H554Y		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	554	Extracellular (Potential).|TSP type-1 1.				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CCATCTGTGTGCGTGCAAGGC	0.617000													7	54					0	0	1	0	0	
ROPN1L	83853	broad.mit.edu	37	5	10461310	10461310	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:10461310G>A	uc003jex.3	+	4	703	c.432G>A	c.(430-432)GCG>GCA	p.A144A		NM_031916	NP_114122	Q96C74	ROP1L_HUMAN	ropporin 1-like	144					ciliary or flagellar motility|signal transduction	cytoplasm|motile cilium	cAMP-dependent protein kinase regulator activity|protein binding			ovary(1)	1						TGAACACTGCGCTGAAGCACC	0.557000													20	50					0	0	1	0	0	
CTNND2	1501	broad.mit.edu	37	5	11111073	11111073	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:11111073G>A	uc003jfa.1	-	14	2505	c.2360C>T	c.(2359-2361)ACG>ATG	p.T787M	CTNND2_uc010itt.2_Missense_Mutation_p.T696M|CTNND2_uc011cmy.1_Missense_Mutation_p.T450M|CTNND2_uc011cmz.1_Missense_Mutation_p.T354M|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.T354M	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	787					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CAGCTCGTCCGTGCCCATGTG	0.542000													55	163					0	0	1	0	0	
CTNND2	1501	broad.mit.edu	37	5	11364912	11364912	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:11364912A>T	uc003jfa.1	-	8	1413	c.1268T>A	c.(1267-1269)ATC>AAC	p.I423N	CTNND2_uc010itt.2_Missense_Mutation_p.I332N|CTNND2_uc011cmy.1_Missense_Mutation_p.I86N|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	423	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GTCTTCATAGATGGGATCTAT	0.612000													16	24					0	0	1	0	0	
CDH9	1007	broad.mit.edu	37	5	26881636	26881636	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:26881636T>C	uc003jgs.1	-	12	2148	c.1979A>G	c.(1978-1980)AAC>AGC	p.N660S	CDH9_uc011cnv.1_Missense_Mutation_p.N253S	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	660	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GCCTTCATCGTTGTAGGTCAC	0.428000													48	111					0	0	1	0	0	
CDH6	1004	broad.mit.edu	37	5	31299688	31299688	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:31299688T>C	uc003jhe.1	+	5	1087	c.761T>C	c.(760-762)GTG>GCG	p.V254A	CDH6_uc003jhd.1_Missense_Mutation_p.V254A	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	254	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ACCACCACCGTGAACATCACA	0.468000													21	54					0	0	1	0	0	
PDZD2	23037	broad.mit.edu	37	5	32088318	32088318	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:32088318G>T	uc003jhl.2	+	20	5152	c.4764G>T	c.(4762-4764)AAG>AAT	p.K1588N	PDZD2_uc003jhm.2_Missense_Mutation_p.K1588N	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1588					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTTTGCACAAGGAAGATCCTT	0.567000													36	69					3.11337e-16	3.33832e-16	1	1	0	
ADAMTS12	81792	broad.mit.edu	37	5	33658359	33658359	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:33658359G>A	uc003jia.1	-	7	1283	c.1120C>T	c.(1120-1122)CGC>TGC	p.R374C	ADAMTS12_uc010iuq.1_Missense_Mutation_p.R374C	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	374	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TTACAACTGCGGTGAGGCTGA	0.507000										HNSCC(64;0.19)			34	83					0	0	1	0	0	
GHR	2690	broad.mit.edu	37	5	42719150	42719150	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:42719150G>A	uc003jmt.2	+	10	1584	c.1541G>A	c.(1540-1542)TGT>TAT	p.C514Y	GHR_uc011cpq.1_Missense_Mutation_p.C327Y	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	514	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	ATGTCCCAATGTGACATGCAC	0.502000													18	34					0	0	1	0	0	
ANKRD55	79722	broad.mit.edu	37	5	55396104	55396104	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:55396104T>C	uc003jqu.2	-	12	1903	c.1751A>G	c.(1750-1752)AAC>AGC	p.N584S	ANKRD55_uc003jqt.2_Missense_Mutation_p.N296S	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	583										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				AAGCACTCGGTTTGTCCGCAG	0.458000													44	61					0	0	1	0	0	
RAB3C	115827	broad.mit.edu	37	5	57913586	57913586	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:57913586A>G	uc003jrp.2	+	2	238	c.141A>G	c.(139-141)CTA>CTG	p.L47L		NM_138453	NP_612462	Q96E17	RAB3C_HUMAN	RAB3C, member RAS oncogene family	47					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)|central_nervous_system(1)	2		all_cancers(5;9.93e-10)|all_epithelial(5;1.49e-10)|all_lung(5;8.97e-05)|Lung NSC(5;0.000139)|Prostate(74;0.0664)		OV - Ovarian serous cystadenocarcinoma(10;1.8e-34)		CATCTTTTCTATTCCGTTATG	0.398000													21	40					0	0	1	0	0	
HTR1A	3350	broad.mit.edu	37	5	63256724	63256724	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:63256724G>T	uc011cqt.1	-	1	823	c.823C>A	c.(823-825)CTG>ATG	p.L275M		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	275	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TTGGCGCACAGAGCACCCCCA	0.652000													17	45					8.00594e-06	8.20574e-06	1	1	0	
HTR1A	3350	broad.mit.edu	37	5	63257082	63257082	+	Silent	SNP	C	T	T	rs115753404	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:63257082C>T	uc011cqt.1	-	1	465	c.465G>A	c.(463-465)GCG>GCA	p.A155A		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	155	Helical; Name=4; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GCGAGATGAGCGCAGCGGCGC	0.647000													23	57					0	0	1	0	0	
RNF180	285671	broad.mit.edu	37	5	63509644	63509644	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:63509644G>T	uc003jti.2	+	4	601	c.491G>T	c.(490-492)AGG>ATG	p.R164M	RNF180_uc003jth.3_Missense_Mutation_p.R164M|RNF180_uc010iws.2_Intron	NM_001113561	NP_001107033	Q86T96	RN180_HUMAN	ring finger protein 180 isoform 1	164	Cytoplasmic (Potential).					integral to membrane|nuclear envelope	zinc ion binding				0		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0848)|Colorectal(97;0.234)		Lung(70;0.114)		AGAAATCACAGGCTTTTAAAC	0.433000													37	62					2.87052e-16	3.07979e-16	1	1	0	
TNPO1	3842	broad.mit.edu	37	5	72144271	72144271	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:72144271G>A	uc003kck.3	+	2	222	c.75G>A	c.(73-75)CAG>CAA	p.Q25Q	TNPO1_uc011csi.1_RNA|TNPO1_uc011csj.1_Silent_p.Q25Q|TNPO1_uc003kch.2_Silent_p.Q17Q|TNPO1_uc003kci.3_Silent_p.Q17Q|TNPO1_uc003kcg.3_Silent_p.Q17Q	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	25					interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		AAATCCTGCAGCTGTTGAAGG	0.527000													19	21					0	0	1	0	0	
HMGCR	3156	broad.mit.edu	37	5	74651260	74651260	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:74651260G>A	uc003kdp.2	+	14	1949	c.1793G>A	c.(1792-1794)CGT>CAT	p.R598H	HMGCR_uc011cst.1_Missense_Mutation_p.R618H|HMGCR_uc003kdq.2_Missense_Mutation_p.R545H	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	598	Catalytic.				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	CGTCTTCCACGTGCTTGTGAC	0.527000													41	90					0	0	1	0	0	
POLK	51426	broad.mit.edu	37	5	74877075	74877075	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:74877075C>T	uc003kdw.2	+	7	832	c.736C>T	c.(736-738)CGA>TGA	p.R246*	POLK_uc003kdx.2_RNA|POLK_uc003kdy.2_RNA|POLK_uc003kea.2_Nonsense_Mutation_p.R246*|POLK_uc003keb.2_Nonsense_Mutation_p.R246*|POLK_uc010izq.2_Nonsense_Mutation_p.R246*|POLK_uc003kec.2_Nonsense_Mutation_p.R156*|POLK_uc010izr.2_RNA|POLK_uc010izs.2_RNA|POLK_uc003ked.2_Nonsense_Mutation_p.R156*|POLK_uc003kee.2_Nonsense_Mutation_p.R246*|POLK_uc003kef.2_Nonsense_Mutation_p.R156*	NM_016218	NP_057302	Q9UBT6	POLK_HUMAN	DNA-directed DNA polymerase kappa	246	UmuC.				DNA replication|nucleotide-excision repair, DNA gap filling	nucleus	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|kidney(2)	4		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;2.9e-54)|all cancers(79;1.27e-42)		TGAGCATGAACGATCCATCTC	0.363000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					21	51					0	0	1	0	0	
POLK	51426	broad.mit.edu	37	5	74880741	74880741	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:74880741C>T	uc003kdw.2	+	9	1312	c.1216C>T	c.(1216-1218)CAC>TAC	p.H406Y	POLK_uc003kdx.2_RNA|POLK_uc003kdy.2_RNA|POLK_uc003keb.2_Missense_Mutation_p.H406Y|POLK_uc010izq.2_Intron|POLK_uc003kec.2_Missense_Mutation_p.H316Y|POLK_uc010izr.2_RNA|POLK_uc010izs.2_RNA|POLK_uc003ked.2_Missense_Mutation_p.H316Y|POLK_uc003kee.2_Missense_Mutation_p.H406Y|POLK_uc003kef.2_Missense_Mutation_p.H316Y	NM_016218	NP_057302	Q9UBT6	POLK_HUMAN	DNA-directed DNA polymerase kappa	406					DNA replication|nucleotide-excision repair, DNA gap filling	nucleus	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|kidney(2)	4		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;2.9e-54)|all cancers(79;1.27e-42)		AGGTTCAACACACCTGACGAG	0.383000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					19	71					0	0	1	0	0	
ATP6AP1L	92270	broad.mit.edu	37	5	81614036	81614036	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:81614036G>A	uc003khv.2	+	10	1917	c.592G>A	c.(592-594)GCC>ACC	p.A198T	ATP6AP1L_uc003khw.2_Missense_Mutation_p.A198T	NM_001017971	NP_001017971	Q52LC2	VAS1L_HUMAN	ATPase, H+ transporting, lysosomal accessory	198					ATP hydrolysis coupled proton transport	integral to membrane|proton-transporting V-type ATPase, V1 domain	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						TCGAGACACAGCCGAAGAGAA	0.532000													12	42					0	0	1	0	0	
HAPLN1	1404	broad.mit.edu	37	5	82940335	82940335	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:82940335C>T	uc003kim.2	-	3	693	c.622G>A	c.(622-624)GGC>AGC	p.G208S	HAPLN1_uc003kin.2_Missense_Mutation_p.G208S	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	208	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		CTGAGCCAGCCGGCATTGCAC	0.622000													20	41					0	0	1	0	0	
FAM81B	153643	broad.mit.edu	37	5	94764401	94764401	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:94764401G>A	uc003kla.1	+	6	797	c.751G>A	c.(751-753)GCC>ACC	p.A251T	FAM81B_uc010jbe.1_Missense_Mutation_p.A47T	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	251										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		ATTCGTGCCCGCCCTGGAAAC	0.403000													47	126					0	0	1	0	0	
ERAP1	51752	broad.mit.edu	37	5	96121526	96121526	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:96121526C>T	uc003kmm.2	-	13	2256	c.1909G>A	c.(1909-1911)GCG>ACG	p.A637T	ERAP1_uc003kml.2_Missense_Mutation_p.A637T|ERAP1_uc010jbm.1_Missense_Mutation_p.A449T|ERAP1_uc003kmn.2_Missense_Mutation_p.A637T	NM_001040458	NP_001035548	Q9NZ08	ERAP1_HUMAN	type 1 tumor necrosis factor receptor shedding	637	Lumenal (Potential).				angiogenesis|antigen processing and presentation of endogenous peptide antigen via MHC class I|fat cell differentiation|membrane protein ectodomain proteolysis|regulation of blood pressure|regulation of innate immune response|response to bacterium	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|integral to membrane	aminopeptidase activity|interleukin-1, Type II receptor binding|interleukin-6 receptor binding|metalloexopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		all_cancers(142;1.75e-06)|all_epithelial(76;3.08e-09)|all_lung(232;0.000435)|Lung NSC(167;0.000601)|Ovarian(225;0.024)|Colorectal(57;0.0432)|Breast(839;0.244)		all cancers(79;7.26e-15)|COAD - Colon adenocarcinoma(37;0.071)		ATGAGACTCGCCCGATCATTA	0.423000													19	36					0	0	1	0	0	
ERAP1	51752	broad.mit.edu	37	5	96139411	96139411	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:96139411C>T	uc003kmm.2	-	2	566	c.219G>A	c.(217-219)ACG>ACA	p.T73T	ERAP1_uc003kml.2_Silent_p.T73T|ERAP1_uc010jbm.1_Intron|ERAP1_uc003kmn.2_Silent_p.T73T	NM_001040458	NP_001035548	Q9NZ08	ERAP1_HUMAN	type 1 tumor necrosis factor receptor shedding	73	Lumenal (Potential).				angiogenesis|antigen processing and presentation of endogenous peptide antigen via MHC class I|fat cell differentiation|membrane protein ectodomain proteolysis|regulation of blood pressure|regulation of innate immune response|response to bacterium	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|integral to membrane	aminopeptidase activity|interleukin-1, Type II receptor binding|interleukin-6 receptor binding|metalloexopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		all_cancers(142;1.75e-06)|all_epithelial(76;3.08e-09)|all_lung(232;0.000435)|Lung NSC(167;0.000601)|Ovarian(225;0.024)|Colorectal(57;0.0432)|Breast(839;0.244)		all cancers(79;7.26e-15)|COAD - Colon adenocarcinoma(37;0.071)		AGAAGGTCAGCGTGGTAAGGT	0.488000													39	81					0	0	1	0	0	
FBXL17	64839	broad.mit.edu	37	5	107559928	107559928	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:107559928A>G	uc011cvc.1	-	5	1915	c.1508T>C	c.(1507-1509)GTG>GCG	p.V503A	FBXL17_uc003kon.3_Missense_Mutation_p.V105A	NM_001163315	NP_001156787	Q9UF56	FXL17_HUMAN	F-box and leucine-rich repeat protein 17	503											0		all_cancers(142;0.00273)|all_epithelial(76;0.000362)|Prostate(80;0.0115)|Myeloproliferative disorder(839;0.0393)|Ovarian(225;0.232)		OV - Ovarian serous cystadenocarcinoma(64;9.63e-11)|Epithelial(69;4.02e-10)		CTGATCTGTCACCTAGGGAAA	0.303000													16	33					0	0	1	0	0	
SLC25A46	91137	broad.mit.edu	37	5	110097004	110097004	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:110097004C>T	uc003koz.2	+	8	846	c.779C>T	c.(778-780)CCG>CTG	p.P260L	SLC25A46_uc011cvi.1_Missense_Mutation_p.P169L	NM_138773	NP_620128	Q96AG3	S2546_HUMAN	solute carrier family 25, member 46	260	Helical; Name=4; (Potential).				transport	integral to membrane|mitochondrial inner membrane					0		all_cancers(142;0.00203)|all_epithelial(76;4.52e-05)|Prostate(80;0.0115)|Colorectal(57;0.0676)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;2.58e-09)|Epithelial(69;7.29e-08)|all cancers(49;9.35e-06)|COAD - Colon adenocarcinoma(37;0.211)		CGACTTCTTCCGCTTCTTTCC	0.403000													45	80					0	0	1	0	0	
EPB41L4A	64097	broad.mit.edu	37	5	111506045	111506045	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:111506045G>A	uc003kpv.1	-	20	1966	c.1692C>T	c.(1690-1692)TCC>TCT	p.S564S	EPB41L4A_uc003kpp.1_Silent_p.S191S|EPB41L4A_uc003kpu.1_5'Flank	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	564				S -> F (in Ref. 2; AAI14943).		cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CGGACAATCCGGATGGATCCA	0.373000													14	30					0	0	1	0	0	
REEP5	7905	broad.mit.edu	37	5	112222807	112222807	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:112222807C>T	uc003kqe.1	-	4	569	c.425G>A	c.(424-426)CGT>CAT	p.R142H	SRP19_uc011cvu.1_Intron|SRP19_uc011cvv.1_Intron|REEP5_uc011cvw.1_Missense_Mutation_p.R115H|REEP5_uc011cvx.1_RNA|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_RNA	NM_005669	NP_005660	Q00765	REEP5_HUMAN	receptor accessory protein 5	142						integral to membrane	protein binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		Epithelial(69;1.3e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.26e-08)|all cancers(49;3.56e-07)|Colorectal(14;0.00778)|COAD - Colon adenocarcinoma(37;0.013)		GAAGAAAGGACGGATGATGCG	0.522000													22	43					0	0	1	0	0	
CDO1	1036	broad.mit.edu	37	5	115142176	115142176	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:115142176G>A	uc003krg.2	-	4	754	c.443C>T	c.(442-444)ACG>ATG	p.T148M		NM_001801	NP_001792	Q16878	CDO1_HUMAN	cysteine dioxygenase	148					inflammatory response|sulfur amino acid biosynthetic process|taurine biosynthetic process	cytosol	cysteine dioxygenase activity			large_intestine(1)|skin(1)	2		all_cancers(142;0.0046)|all_epithelial(76;0.000161)|Prostate(80;0.0132)|Ovarian(225;0.0776)		OV - Ovarian serous cystadenocarcinoma(64;7.8e-08)|Epithelial(69;7.32e-07)|all cancers(49;3.24e-05)	L-Cysteine(DB00151)|NADH(DB00157)	AGCAGGTTCCGTATGGCTGAT	0.403000													14	43					0	0	1	0	0	
SEMA6A	57556	broad.mit.edu	37	5	115783003	115783003	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:115783003G>T	uc010jck.2	-	19	3108	c.2399C>A	c.(2398-2400)CCC>CAC	p.P800H	SEMA6A_uc003krx.3_Missense_Mutation_p.P817H|SEMA6A_uc011cwe.1_Missense_Mutation_p.P179H|SEMA6A_uc003krv.3_Missense_Mutation_p.P227H|SEMA6A_uc003krw.3_Missense_Mutation_p.P277H|SEMA6A_uc010jcj.2_Missense_Mutation_p.P344H	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	800	Cytoplasmic (Potential).|Pro-rich.				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		CAGGTCCGTGGGAATCACAGG	0.667000													22	50					3.5997e-14	3.83418e-14	1	1	0	
DMXL1	1657	broad.mit.edu	37	5	118485628	118485628	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:118485628G>A	uc003ksd.2	+	18	4287	c.4106G>A	c.(4105-4107)CGC>CAC	p.R1369H	DMXL1_uc010jcl.1_Missense_Mutation_p.R1369H	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1369										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AATCATGAACGCCGCCTTAGG	0.463000													15	40					0	0	1	0	0	
CTXN3	613212	broad.mit.edu	37	5	126993261	126993261	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:126993261C>T	uc003kul.3	+	3	622	c.48C>T	c.(46-48)AAC>AAT	p.N16N	CTXN3_uc003kum.3_Silent_p.N16N	NM_001048252	NP_001041717	Q4LDR2	CTXN3_HUMAN	cortexin 3	16						integral to membrane					0		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0128)|COAD - Colon adenocarcinoma(49;0.0234)|OV - Ovarian serous cystadenocarcinoma(64;0.038)		CCCTTGGGAACGAATCAGCAG	0.478000													7	49					0	0	1	0	0	
FBN2	2201	broad.mit.edu	37	5	127622436	127622436	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:127622436C>T	uc003kuu.2	-	55	7425	c.6986G>A	c.(6985-6987)CGA>CAA	p.R2329Q		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2329	EGF-like 39; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		ATCGGGCCTTCGGGCCATTCC	0.512000													12	40					0	0	1	0	0	
FBN2	2201	broad.mit.edu	37	5	127624227	127624227	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:127624227G>A	uc003kuu.2	-	53	7099	c.6660C>T	c.(6658-6660)GGC>GGT	p.G2220G		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2220	EGF-like 37; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CACACGGATTGCCGATTGAAC	0.428000													22	45					0	0	1	0	0	
FBN2	2201	broad.mit.edu	37	5	127873117	127873117	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:127873117C>T	uc003kuu.2	-	1	619	c.180G>A	c.(178-180)GCG>GCA	p.A60A	FBN2_uc003kuv.2_Silent_p.A60A|FBN2_uc003kuw.3_Silent_p.A60A|FBN2_uc003kux.1_Silent_p.A60A	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	60					bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GATACTCGGGCGCTAGAAACC	0.726000													4	10					0	0	1	0	0	
FNIP1	96459	broad.mit.edu	37	5	131042192	131042192	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:131042192A>C	uc003kvs.1	-	9	968	c.826T>G	c.(826-828)TCA>GCA	p.S276A	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Missense_Mutation_p.S248A|FNIP1_uc010jdm.1_Missense_Mutation_p.S231A|FNIP1_uc003kvu.2_Missense_Mutation_p.S276A	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	276					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		CGGGTAAGTGAGGAGTTTGGG	0.448000													19	32					0	0	1	0	0	
ACSL6	23305	broad.mit.edu	37	5	131324516	131324516	+	Missense_Mutation	SNP	G	A	A	rs149994861		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:131324516G>A	uc010jdo.1	-	6	642	c.559C>T	c.(559-561)CGC>TGC	p.R187C	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.R212C|ACSL6_uc003kvy.1_Missense_Mutation_p.R212C|ACSL6_uc003kwb.2_Missense_Mutation_p.R177C|ACSL6_uc003kvz.1_Missense_Mutation_p.R152C|ACSL6_uc003kwa.1_Missense_Mutation_p.R198C|ACSL6_uc010jdn.1_Missense_Mutation_p.R187C|ACSL6_uc010jdp.1_5'Flank	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	187	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATGATGTAGCGGATAGCCCCA	0.577000													22	44					0	0	1	0	0	
SLC22A5	6584	broad.mit.edu	37	5	131719977	131719977	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:131719977G>T	uc003kww.3	+	3	900	c.636G>T	c.(634-636)GTG>GTT	p.V212V	SLC22A5_uc003kwx.3_Silent_p.V236V|SLC22A5_uc010jdr.1_5'Flank	NM_003060	NP_003051	O76082	S22A5_HUMAN	solute carrier family 22 member 5	212	Helical; Name=4; (Potential).				positive regulation of intestinal epithelial structure maintenance|quorum sensing involved in interaction with host|sodium ion transport|sodium-dependent organic cation transport	apical plasma membrane|brush border membrane|integral to membrane	ATP binding|carnitine transporter activity|PDZ domain binding|symporter activity				0		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	CCAACTATGTGGCAGCATTTG	0.468000													24	52					1.37878e-21	1.49199e-21	1	1	0	
AFF4	27125	broad.mit.edu	37	5	132238133	132238133	+	Splice_Site	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:132238133C>T	uc003kyd.2	-	7	1541	c.1133_splice	c.e7+1	p.S378_splice	AFF4_uc011cxk.1_Splice_Site_p.S56_splice|AFF4_uc003kye.1_Splice_Site_p.S378_splice	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31						transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AATAAACTTACGATTTAGACT	0.274000													4	33					0	0	1	0	0	
C5orf24	134553	broad.mit.edu	37	5	134190633	134190633	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:134190633C>T	uc003kzx.2	+	2	104	c.43C>T	c.(43-45)CCT>TCT	p.P15S	C5orf24_uc003kzy.3_Missense_Mutation_p.P15S|C5orf24_uc003kzz.2_Missense_Mutation_p.P15S	NM_152409	NP_689622	Q7Z6I8	CE024_HUMAN	hypothetical protein LOC134553	15											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTTCTGTGGGCCTGGCAAGCC	0.418000													54	116					0	0	1	0	0	
CTNNA1	1495	broad.mit.edu	37	5	138160275	138160275	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:138160275G>T	uc003ldh.2	+	6	740	c.645G>T	c.(643-645)CAG>CAT	p.Q215H	CTNNA1_uc011cyx.1_Missense_Mutation_p.Q112H|CTNNA1_uc011cyy.1_Missense_Mutation_p.Q92H|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Missense_Mutation_p.Q215H	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	215	Involved in homodimerization.				adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GAATCCTGCAGAAGAACGTTC	0.468000													12	38					0.010729	0.0107901	1	1	0	
PCDHA10	56139	broad.mit.edu	37	5	140237279	140237279	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140237279C>T	uc003lhx.2	+	1	1646	c.1646C>T	c.(1645-1647)ACG>ATG	p.T549M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Missense_Mutation_p.T549M	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	549	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCAACTTGACGCTGCAGGTG	0.692000													27	52					0	0	1	0	0	
PCDHA11	56138	broad.mit.edu	37	5	140248828	140248828	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140248828G>A	uc003lia.2	+	1	998	c.140G>A	c.(139-141)CGC>CAC	p.R47H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.R47H	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	47	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGTGGGCCGCATCGCGCAG	0.642000													34	88					0	0	1	0	0	
PCDHA12	56137	broad.mit.edu	37	5	140256906	140256906	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140256906G>A	uc003lic.2	+	1	1976	c.1849G>A	c.(1849-1851)GGC>AGC	p.G617S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.G617S	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	617	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGGCGGTCGGCGCGCACAT	0.682000													17	44					0	0	1	0	0	
PCDHB3	56132	broad.mit.edu	37	5	140481708	140481708	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140481708C>T	uc003lio.2	+	1	1475	c.1475C>T	c.(1474-1476)CCG>CTG	p.P492L	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	492	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCGCTGCTGCCGCCCCAGGAC	0.652000													37	101					0	0	1	0	0	
PCDHB5	26167	broad.mit.edu	37	5	140516775	140516775	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140516775A>C	uc003liq.2	+	1	1976	c.1759A>C	c.(1759-1761)AAG>CAG	p.K587Q		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	587	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGGTGACCAAGGTGGTGGC	0.687000													22	52					0	0	1	0	0	
PCDHB5	26167	broad.mit.edu	37	5	140517298	140517298	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140517298G>T	uc003liq.2	+	1	2499	c.2282G>T	c.(2281-2283)GGC>GTC	p.G761V		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	761	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAGGGGCCGGCGAGTTCAAG	0.567000													14	147					2.32078e-09	2.42946e-09	1	1	0	
PCDHB17	54661	broad.mit.edu	37	5	140536926	140536926	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140536926C>T	uc003lis.2	+	1	1347	c.1347C>T	c.(1345-1347)CCC>CCT	p.P449P		NR_001280				SubName: Full=Protocadherin-psi1;												0						ACAACGCCCCCGCCTTCACCC	0.577000													8	135					0	0	1	0	0	
PCDHB8	56128	broad.mit.edu	37	5	140559171	140559171	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140559171C>T	uc011dai.1	+	1	1742	c.1556C>T	c.(1555-1557)TCG>TTG	p.S519L	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	519	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCTCAGGTCGCTGGACTAC	0.687000													39	99					0	0	1	0	0	
PCDHB16	57717	broad.mit.edu	37	5	140563197	140563197	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140563197C>T	uc003liv.2	+	1	2218	c.1063C>T	c.(1063-1065)CCC>TCC	p.P355S	PCDHB16_uc010jfw.1_Missense_Mutation_p.P27S	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	355	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTCACCAGCCCCATCCCAGA	0.527000													6	92					0	0	1	0	0	
PCDHB9	56127	broad.mit.edu	37	5	140568533	140568533	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140568533C>T	uc003liw.1	+	3	1642	c.1642C>T	c.(1642-1644)CGC>TGC	p.R548C		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	548	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCGCTGGTGCGCGTACTGGT	0.706000													29	63					0	0	1	0	0	
PCDHB10	56126	broad.mit.edu	37	5	140573214	140573214	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140573214G>A	uc003lix.2	+	1	1263	c.1089G>A	c.(1087-1089)ACG>ACA	p.T363T		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	363	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCCTGAGACGCCGCTGGCTG	0.418000													34	41					0	0	1	0	0	
PCDHB12	56124	broad.mit.edu	37	5	140590223	140590223	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140590223C>T	uc003liz.2	+	1	1933	c.1744C>T	c.(1744-1746)CCG>TCG	p.P582S	PCDHB12_uc011dak.1_Missense_Mutation_p.P245S	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	582	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCGGCCGAGCCGGGCTACCT	0.692000													25	98					0	0	1	0	0	
PCDHB15	56121	broad.mit.edu	37	5	140627174	140627174	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140627174G>A	uc003lje.2	+	1	2028	c.2028G>A	c.(2026-2028)GCG>GCA	p.A676A		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	676	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCAGAGGCGGCCCCGGCCC	0.662000													43	79					0	0	1	0	0	
PCDHGA7	56108	broad.mit.edu	37	5	140764119	140764119	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140764119C>T	uc003lka.1	+	1	1653	c.1653C>T	c.(1651-1653)TTC>TTT	p.F551F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Silent_p.F551F	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	551	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAGCCTGTTCGTGCTGGACC	0.577000													32	63					0	0	1	0	0	
PCDHGA9	56107	broad.mit.edu	37	5	140783163	140783163	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140783163C>T	uc003lkh.1	+	1	644	c.644C>T	c.(643-645)TCG>TTG	p.S215L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.S215L	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	215	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCACGGCCTCGGATGGCGGC	0.597000													19	32					0	0	1	0	0	
PCDHGB6	56100	broad.mit.edu	37	5	140789345	140789345	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140789345C>T	uc003lkj.1	+	1	1576	c.1576C>T	c.(1576-1578)CGC>TGC	p.R526C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.R526C	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	526	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGAGCAGCTGCGCGCCTTCGC	0.687000													5	12					0	0	1	0	0	
PCDHGC5	56097	broad.mit.edu	37	5	140885041	140885041	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140885041C>T	uc003lla.1	+	3	2601	c.2601C>T	c.(2599-2601)TCC>TCT	p.S867S	PCDHGA1_uc003lji.1_Silent_p.S854S|PCDHGA2_uc003ljk.1_Silent_p.S855S|PCDHGA3_uc003ljm.1_Silent_p.S855S|PCDHGA3_uc010jfx.1_Silent_p.S615S|PCDHGB1_uc003ljo.1_Silent_p.S850S|PCDHGA4_uc003ljq.1_Silent_p.S854S|PCDHGB2_uc003ljs.1_Silent_p.S854S|PCDHGA5_uc003lju.1_Silent_p.S854S|PCDHGB3_uc003ljw.1_Silent_p.S852S|PCDHGA6_uc003ljy.1_Silent_p.S855S|PCDHGA7_uc003lka.1_Silent_p.S855S|PCDHGB4_uc003lkc.1_Silent_p.S846S|PCDHGA8_uc003lkd.1_Silent_p.S855S|PCDHGB5_uc003lkf.1_Silent_p.S846S|PCDHGA9_uc003lkh.1_Silent_p.S855S|PCDHGB6_uc003lkj.1_Silent_p.S853S|PCDHGA10_uc003lkl.1_Silent_p.S859S|PCDHGB7_uc003lkn.1_Silent_p.S852S|PCDHGA11_uc003lkp.1_Silent_p.S673S|PCDHGA11_uc003lkq.1_Silent_p.S858S|PCDHGA12_uc003lkt.1_Silent_p.S855S|PCDHGC3_uc003lkv.1_Silent_p.S857S|PCDHGC3_uc003lkw.1_Silent_p.S57S|PCDHGC4_uc003lky.1_Silent_p.S861S	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	867	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTTGGCGTCCGCCAGTGGTA	0.567000													29	64					0	0	1	0	0	
PCDHGC5	56097	broad.mit.edu	37	5	140890548	140890548	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140890548T>C	uc003lla.1	+	4	2643	c.2643T>C	c.(2641-2643)GGT>GGC	p.G881G	PCDHGA1_uc003lji.1_Silent_p.G868G|PCDHGA2_uc003ljk.1_Silent_p.G869G|PCDHGA3_uc003ljm.1_Silent_p.G869G|PCDHGA3_uc010jfx.1_Silent_p.G629G|PCDHGB1_uc003ljo.1_Silent_p.G864G|PCDHGA4_uc003ljq.1_Silent_p.G868G|PCDHGB2_uc003ljs.1_Silent_p.G868G|PCDHGA5_uc003lju.1_Silent_p.G868G|PCDHGB3_uc003ljw.1_Silent_p.G866G|PCDHGA6_uc003ljy.1_Silent_p.G869G|PCDHGA7_uc003lka.1_Silent_p.G869G|PCDHGB4_uc003lkc.1_Silent_p.G860G|PCDHGA8_uc003lkd.1_Silent_p.G869G|PCDHGB5_uc003lkf.1_Silent_p.G860G|PCDHGA9_uc003lkh.1_Silent_p.G869G|PCDHGB6_uc003lkj.1_Silent_p.G867G|PCDHGA10_uc003lkl.1_Silent_p.G873G|PCDHGB7_uc003lkn.1_Silent_p.G866G|PCDHGA11_uc003lkp.1_Silent_p.G687G|PCDHGA11_uc003lkq.1_Silent_p.G872G|PCDHGA12_uc003lkt.1_Silent_p.G869G|PCDHGC3_uc003lkv.1_Silent_p.G871G|PCDHGC3_uc003lkw.1_Silent_p.G71G|PCDHGC4_uc003lky.1_Silent_p.G875G	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	881	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGAGGGGGTGCCGGCACCA	0.587000													33	93					0	0	1	0	0	
DIAPH1	1729	broad.mit.edu	37	5	140908488	140908488	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:140908488C>T	uc003llb.3	-	23	2940	c.2799G>A	c.(2797-2799)CTG>CTA	p.L933L	DIAPH1_uc011dbd.1_5'Flank|DIAPH1_uc003llc.3_Silent_p.L924L|DIAPH1_uc010jgc.1_Silent_p.L369L	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	933	FH2.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGAGGCCGCAGTCGGGGCA	0.493000													9	32					0	0	1	0	0	
FCHSD1	89848	broad.mit.edu	37	5	141029028	141029028	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:141029028C>T	uc003llk.2	-	5	360	c.309G>A	c.(307-309)GCG>GCA	p.A103A	FCHSD1_uc010jgg.2_5'Flank|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	103									FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCGGTCAGACGCCTGGAGTC	0.637000													55	83					0	0	1	0	0	
PCDH1	5097	broad.mit.edu	37	5	141248471	141248471	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:141248471A>G	uc003llq.2	-	2	683	c.566T>C	c.(565-567)ATC>ACC	p.I189T	PCDH1_uc003llp.2_Missense_Mutation_p.I189T|PCDH1_uc011dbf.1_Missense_Mutation_p.I167T	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	189	Extracellular (Potential).|Cadherin 2.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		AGCCAGCGGGATGGGGAAGAG	0.567000													39	140					0	0	1	0	0	
NR3C1	2908	broad.mit.edu	37	5	142780298	142780298	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:142780298C>A	uc003lmz.2	-	2	599	c.107G>T	c.(106-108)GGA>GTA	p.G36V	NR3C1_uc003lmy.2_Missense_Mutation_p.G36V|NR3C1_uc003lna.2_Missense_Mutation_p.G36V|NR3C1_uc003lnb.2_Missense_Mutation_p.G36V|NR3C1_uc011dbk.1_Intron|NR3C1_uc003lnc.2_Missense_Mutation_p.G36V|NR3C1_uc003lnd.2_Missense_Mutation_p.G36V|NR3C1_uc003lne.2_Missense_Mutation_p.G36V|NR3C1_uc003lnf.2_Missense_Mutation_p.G36V|NR3C1_uc003lng.2_Missense_Mutation_p.G36V|NR3C1_uc003lnh.2_Missense_Mutation_p.G36V|NR3C1_uc003lni.2_Missense_Mutation_p.G36V	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	36	Modulating.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	CACAGTAGCTCCTCCTCTTAG	0.473000													34	58					5.91797e-21	6.39604e-21	1	1	0	
ADRB2	154	broad.mit.edu	37	5	148206713	148206713	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:148206713G>A	uc003lpr.1	+	1	558	c.319G>A	c.(319-321)GAG>AAG	p.E107K	SH3TC2_uc003lpp.1_Intron	NM_000024	NP_000015	P07550	ADRB2_HUMAN	adrenergic, beta-2-, receptor, surface	107	Helical; Name=3.				activation of transmembrane receptor protein tyrosine kinase activity|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|endosome to lysosome transport|positive regulation of MAPKKK cascade|receptor-mediated endocytosis	endosome|integral to plasma membrane|lysosome|receptor complex	beta2-adrenergic receptor activity|norepinephrine binding|potassium channel regulator activity|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Alprenolol(DB00866)|Arformoterol(DB01274)|Bambuterol(DB01408)|Bisoprolol(DB00612)|Bitolterol(DB00901)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Clenbuterol(DB01407)|Desipramine(DB01151)|Epinephrine(DB00668)|Fenoterol(DB01288)|Formoterol(DB00983)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Nadolol(DB01203)|Norepinephrine(DB00368)|Orciprenaline(DB00816)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Pirbuterol(DB01291)|Procaterol(DB01366)|Propranolol(DB00571)|Pseudoephedrine(DB00852)|Ritodrine(DB00867)|Salbutamol(DB01001)|Salmeterol(DB00938)|Terbutaline(DB00871)|Timolol(DB00373)	CTTCTGGTGCGAGTTTTGGAC	0.522000													22	54					0	0	1	0	0	
PPARGC1B	133522	broad.mit.edu	37	5	149216029	149216029	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:149216029G>A	uc003lrc.2	+	8	2053	c.2011G>A	c.(2011-2013)GCC>ACC	p.A671T	PPARGC1B_uc003lrb.1_Missense_Mutation_p.A671T|PPARGC1B_uc003lrd.2_Missense_Mutation_p.A632T|PPARGC1B_uc003lrf.2_Missense_Mutation_p.A650T|PPARGC1B_uc003lre.1_Missense_Mutation_p.A650T	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	671					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CCTGCGACATGCCACAGCCCA	0.637000													20	55					0	0	1	0	0	
FAT2	2196	broad.mit.edu	37	5	150885493	150885493	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:150885493A>G	uc003lue.3	-	23	12696	c.12683T>C	c.(12682-12684)TTC>TCC	p.F4228S	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.F835S	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	4228	Cytoplasmic (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTCCAGGGGGAAGGGGAAGCC	0.637000													50	118					0	0	1	0	0	
SPARC	6678	broad.mit.edu	37	5	151043687	151043687	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:151043687C>T	uc003luh.2	-	8	868	c.844G>A	c.(844-846)GCC>ACC	p.A282T	GM2A_uc011dcs.1_Intron|SPARC_uc003lug.2_Missense_Mutation_p.A116T|SPARC_uc003lui.2_Missense_Mutation_p.A282T	NM_003118	NP_003109	P09486	SPRC_HUMAN	secreted protein, acidic, cysteine-rich	282	|EF-hand.				ossification|platelet activation|platelet degranulation|signal transduction	basement membrane|extracellular space|platelet alpha granule lumen	calcium ion binding|collagen binding			central_nervous_system(1)	1		Medulloblastoma(196;0.109)|all_hematologic(541;0.122)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;0.00118)	Becaplermin(DB00102)	TCATCCAGGGCGATGTACTTG	0.592000													12	67					0	0	1	0	0	
EBF1	1879	broad.mit.edu	37	5	158223392	158223392	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:158223392C>T	uc010jip.2	-	9	1172	c.870G>A	c.(868-870)GGG>GGA	p.G290G	EBF1_uc011ddw.1_Silent_p.G158G|EBF1_uc011ddx.1_Silent_p.G291G|EBF1_uc003lxl.3_Silent_p.G259G	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	290	IPT/TIG.				multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGACCTGTAACCCATCAAAGA	0.453000			T	HMGA2	lipoma								16	45					0	0	1	0	0	
SLU7	10569	broad.mit.edu	37	5	159833494	159833494	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:159833494A>G	uc003lyg.2	-	12	1423	c.1268T>C	c.(1267-1269)GTG>GCG	p.V423A		NM_006425	NP_006416	O95391	SLU7_HUMAN	step II splicing factor SLU7	423					alternative nuclear mRNA splicing, via spliceosome|nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|cytoplasm|nuclear speck|small nuclear ribonucleoprotein complex	pre-mRNA 3'-splice site binding|second spliceosomal transesterification activity|zinc ion binding			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTGGATCTTCACATCCTCCTC	0.428000													28	64					0	0	1	0	0	
ODZ2	57451	broad.mit.edu	37	5	167674485	167674485	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:167674485A>G	uc010jjd.2	+	27	6514	c.6514A>G	c.(6514-6516)AGC>GGC	p.S2172G	ODZ2_uc003lzr.3_Missense_Mutation_p.S1942G|ODZ2_uc003lzt.3_Missense_Mutation_p.S1545G|ODZ2_uc010jje.2_Missense_Mutation_p.S1436G	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GCAATATGACAGCATGGGCAG	0.547000													12	39					0	0	1	0	0	
PANK3	79646	broad.mit.edu	37	5	167995867	167995867	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:167995867G>A	uc003lzz.1	-	2	465	c.165C>T	c.(163-165)AAC>AAT	p.N55N		NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	55					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		CATATGCCACGTTAGAAGTCA	0.398000													39	78					0	0	1	0	0	
SLIT3	6586	broad.mit.edu	37	5	168093688	168093688	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:168093688G>A	uc003mab.2	-	36	4763	c.4343C>T	c.(4342-4344)CCG>CTG	p.P1448L	SLIT3_uc010jjg.2_Missense_Mutation_p.P1455L	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1448					apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCCAGGCACGGATTCTCTGC	0.562000													10	21					0	0	1	0	0	
DOCK2	1794	broad.mit.edu	37	5	169454916	169454916	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:169454916G>A	uc003maf.2	+	34	3511	c.3431G>A	c.(3430-3432)CGA>CAA	p.R1144Q	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.R636Q	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1144	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAAGGGGGCCGAGGCGACGAG	0.517000													9	42					0	0	1	0	0	
DOCK2	1794	broad.mit.edu	37	5	169454950	169454950	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:169454950A>G	uc003maf.2	+	34	3545	c.3465A>G	c.(3463-3465)TCA>TCG	p.S1155S	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.S647S	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1155	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCTGGAGTCAATGTAAGTTC	0.572000													21	26					0	0	1	0	0	
DOCK2	1794	broad.mit.edu	37	5	169483739	169483739	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:169483739C>T	uc003maf.2	+	43	4427	c.4347C>T	c.(4345-4347)CGC>CGT	p.R1449R	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.R941R|DOCK2_uc003mah.2_5'UTR	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1449	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGCCCGTGCGCAGGGGGACCG	0.572000													4	28					0	0	1	0	0	
STK10	6793	broad.mit.edu	37	5	171533682	171533682	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:171533682G>A	uc003mbo.1	-	6	1030	c.730C>T	c.(730-732)CGG>TGG	p.R244W		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	244	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGCAGGACCCGCATGGGGTTG	0.652000											OREG0017039	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	15					0	0	1	0	0	
CPLX2	10814	broad.mit.edu	37	5	175306962	175306962	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:175306962G>A	uc003mde.1	+	5	665	c.319G>A	c.(319-321)GAC>AAC	p.D107N	CPLX2_uc003mdf.1_Missense_Mutation_p.D107N	NM_006650	NP_006641	Q6PUV4	CPLX2_HUMAN	complexin 2	107					mast cell degranulation|positive regulation of synaptic plasticity|vesicle docking involved in exocytosis	cytosol				ovary(1)	1	all_cancers(89;0.004)|Renal(175;0.000269)|Lung NSC(126;0.00441)|all_lung(126;0.00747)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GGGCTGCGGGGACGAGGAGGA	0.637000													4	9					0	0	1	0	0	
C5orf25	375484	broad.mit.edu	37	5	175772305	175772305	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:175772305C>T	uc003mds.3	+	12	2883	c.2476C>T	c.(2476-2478)CGC>TGC	p.R826C	C5orf25_uc003mdt.3_Missense_Mutation_p.R411C|C5orf25_uc003mdr.3_RNA|C5orf25_uc003mdv.2_Missense_Mutation_p.R287C			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	826											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TGAGGCCTTCCGCAGCCGCCT	0.512000													18	36					0	0	1	0	0	
CDHR2	54825	broad.mit.edu	37	5	176016134	176016134	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:176016134T>G	uc003mem.1	+	22	3025	c.2959T>G	c.(2959-2961)TTC>GTC	p.F987V	CDHR2_uc003men.1_Missense_Mutation_p.F987V	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	987	Extracellular (Potential).|Cadherin 9.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CCAGGGTGTCTTCTCGATCTT	0.602000													53	122					0	0	1	0	0	
UNC5A	90249	broad.mit.edu	37	5	176306759	176306759	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:176306759G>T	uc003mey.2	+	15	2593	c.2401G>T	c.(2401-2403)GCC>TCC	p.A801S		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	801	Death.|Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGCCCCACAGCCATGATCCT	0.692000													12	32					3.27435e-08	3.40147e-08	1	1	0	
FGFR4	2264	broad.mit.edu	37	5	176517963	176517963	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:176517963G>A	uc003mfl.2	+	5	628	c.461G>A	c.(460-462)CGC>CAC	p.R154H	FGFR4_uc003mfm.2_Missense_Mutation_p.R154H|FGFR4_uc011dfu.1_Missense_Mutation_p.R154H|FGFR4_uc011dfv.1_RNA|FGFR4_uc003mfn.1_3'UTR|FGFR4_uc011dfw.1_Missense_Mutation_p.R154H|FGFR4_uc003mfo.2_Missense_Mutation_p.R154H	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	154	Extracellular (Potential).|Ig-like C2-type 2.				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	CACCCCCAGCGCATGGAGAAG	0.602000										TSP Lung(9;0.080)			12	27					0	0	1	0	0	
HNRNPAB	3182	broad.mit.edu	37	5	177637254	177637254	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:177637254C>T	uc003miu.2	+	7	1166	c.909C>T	c.(907-909)TAC>TAT	p.Y303Y	HNRNPAB_uc003miv.2_Intron|HNRNPAB_uc010jks.2_Intron|HNRNPAB_uc003miw.2_Silent_p.Y303Y|HNRNPAB_uc003mix.2_Intron|AGXT2L2_uc003miy.2_Intron|AGXT2L2_uc003mjc.2_Intron|AGXT2L2_uc003miz.2_Intron|AGXT2L2_uc003mja.2_Intron|AGXT2L2_uc003mjb.2_Intron	NM_031266	NP_112556	Q99729	ROAA_HUMAN	heterogeneous nuclear ribonucleoprotein A/B	303	Gly-rich.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0						ATTACGGCTACGGCCCCGGCT	0.627000													9	27					0	0	1	0	0	
ADAMTS2	9509	broad.mit.edu	37	5	178771083	178771083	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:178771083G>A	uc003mjw.2	-	2	219	c.219C>T	c.(217-219)CAC>CAT	p.H73H	ADAMTS2_uc011dgm.1_Silent_p.H73H	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	73					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CCGACACCACGTGGGACACCA	0.736000													3	9					0	0	1	0	0	
MGAT1	4245	broad.mit.edu	37	5	180218736	180218736	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:180218736C>T	uc003mmg.3	-	2	1731	c.1236G>A	c.(1234-1236)CCG>CCA	p.P412P	MGAT1_uc010jlf.2_Silent_p.P412P|MGAT1_uc010jlg.2_Silent_p.P412P|MGAT1_uc003mmh.3_Silent_p.P412P|MGAT1_uc010jlh.2_Silent_p.P412P|MGAT1_uc003mmi.3_Silent_p.P412P	NM_002406	NP_002397	P26572	MGAT1_HUMAN	mannosyl (alpha-1,3-)-glycoprotein	412	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(1)	1	all_cancers(89;1.11e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00356)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCCAGCTCTCGGAACCCCCG	0.622000													9	35					0	0	1	0	0	
HUS1B	135458	broad.mit.edu	37	6	656489	656489	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:656489G>T	uc003mtg.2	-	1	476	c.456C>A	c.(454-456)GCC>GCA	p.A152A	EXOC2_uc003mtd.2_Intron|EXOC2_uc003mte.2_Intron|EXOC2_uc011dho.1_Intron	NM_148959	NP_683762	Q8NHY5	HUS1B_HUMAN	HUS1 checkpoint protein B	152											0	Ovarian(93;0.0733)	Breast(5;0.00139)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.041)|BRCA - Breast invasive adenocarcinoma(62;0.0965)		TCGCGTCGGAGGCGCGCAGGC	0.697000													30	63					7.01153e-11	7.37924e-11	1	1	0	
HUS1B	135458	broad.mit.edu	37	6	656933	656933	+	Silent	SNP	G	A	A	rs141227587		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:656933G>A	uc003mtg.2	-	1	32	c.12C>T	c.(10-12)CGC>CGT	p.R4R	EXOC2_uc003mtd.2_Intron|EXOC2_uc003mte.2_Intron|EXOC2_uc011dho.1_Intron	NM_148959	NP_683762	Q8NHY5	HUS1B_HUMAN	HUS1 checkpoint protein B	4											0	Ovarian(93;0.0733)	Breast(5;0.00139)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.041)|BRCA - Breast invasive adenocarcinoma(62;0.0965)		TGATCTTGGCGCGAAACTTCA	0.657000													11	32					0	0	1	0	0	
F13A1	2162	broad.mit.edu	37	6	6167765	6167765	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:6167765G>A	uc003mwv.2	-	13	1957	c.1834C>T	c.(1834-1836)CGC>TGC	p.R612C	F13A1_uc011dib.1_Missense_Mutation_p.R549C	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	612					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TCATTGATGCGAGCTGTGACA	0.517000													16	26					0	0	1	0	0	
RREB1	6239	broad.mit.edu	37	6	7229845	7229845	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:7229845C>T	uc003mxc.2	+	10	1903	c.1513C>T	c.(1513-1515)CCC>TCC	p.P505S	RREB1_uc003mxb.2_Missense_Mutation_p.P505S|RREB1_uc010jnx.2_Missense_Mutation_p.P505S	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	505	Pro-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CAAGCACATGCCCCCTCTGAA	0.647000													59	165					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	6	9933054	9933054	+	RNA	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:9933054G>T	uc003myg.1	-	2		c.193C>A			uc010jog.1_Missense_Mutation_p.L44I|uc003myh.1_Missense_Mutation_p.L69I|uc003myj.1_Missense_Mutation_p.L69I|uc003myk.1_RNA|uc003myn.2_Missense_Mutation_p.L69I|uc010joi.1_Missense_Mutation_p.L137I|uc010joh.1_RNA|uc011dif.1_Missense_Mutation_p.L69I|uc011dig.1_Missense_Mutation_p.L69I					Homo sapiens clone 958LR MRDS1 protein (MRDS1) mRNA, complete cds.																		TGAGCTGCAAGGGTGCGATCC	0.478000													48	105					2.77807e-22	3.01171e-22	1	1	0	
C6orf114	85411	broad.mit.edu	37	6	13470413	13470413	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:13470413G>A	uc003nav.2	-	2	623	c.100C>T	c.(100-102)CGC>TGC	p.R34C	GFOD1_uc003nas.1_Intron|GFOD1_uc003nat.1_Intron|C6orf114_uc003nau.2_RNA	NM_033069	NP_149060			hypothetical protein LOC85411												0	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0504)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.147)			CAGCACCTGCGCGCGATGAAC	0.502000													13	31					0	0	1	0	0	
RBM24	221662	broad.mit.edu	37	6	17292146	17292146	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:17292146C>T	uc003nbz.3	+	4	511	c.507C>T	c.(505-507)GCC>GCT	p.A169A	RBM24_uc003nby.3_3'UTR|RBM24_uc011dix.1_Silent_p.A111A|RBM24_uc003nca.2_Silent_p.A124A|RBM24_uc011diy.1_Missense_Mutation_p.P83L|RBM24_uc011diz.1_Missense_Mutation_p.P68L	NM_001143942	NP_001137414	Q9BX46	RBM24_HUMAN	RNA binding motif protein 24 isoform 1	169	Ala-rich.				cell differentiation|regulation of mRNA stability|regulation of myotube differentiation	cytoplasm|nucleus	mRNA 3'-UTR binding|nucleotide binding			ovary(1)|skin(1)	2	Breast(50;0.0615)|Ovarian(93;0.0733)	all_hematologic(90;0.062)	all cancers(50;0.131)|Epithelial(50;0.15)			ctgccgccgccgctgctgcCT	0.488000													13	34					0	0	1	0	0	
CDKAL1	54901	broad.mit.edu	37	6	21000460	21000460	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:21000460A>T	uc003ndc.1	+	11	1086	c.912A>T	c.(910-912)GAA>GAT	p.E304D	CDKAL1_uc003ndd.1_Missense_Mutation_p.E304D|CDKAL1_uc003nde.1_Missense_Mutation_p.E234D	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	304					RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			TTTTTAAGGAAATGGCAAAAA	0.388000													13	82					0	0	1	0	0	
PRL	5617	broad.mit.edu	37	6	22290519	22290519	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:22290519G>A	uc003ndp.2	-	4	895	c.376C>T	c.(376-378)CTG>TTG	p.L126L	PRL_uc003ndo.2_Silent_p.L127L|PRL_uc003ndq.2_Silent_p.L126L	NM_000948	NP_000939	P01236	PRL_HUMAN	prolactin precursor	126					cell proliferation|cell surface receptor linked signaling pathway|female pregnancy|lactation|positive regulation of JAK-STAT cascade|regulation of multicellular organism growth	cytosol|extracellular region	hormone activity|prolactin receptor binding				0	Ovarian(93;0.163)					TCCGTGACCAGATGATACAGA	0.453000													17	68					0	0	1	0	0	
PRL	5617	broad.mit.edu	37	6	22290529	22290529	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:22290529A>G	uc003ndp.2	-	4	885	c.366T>C	c.(364-366)CCT>CCC	p.P122P	PRL_uc003ndo.2_Silent_p.P123P|PRL_uc003ndq.2_Silent_p.P122P	NM_000948	NP_000939	P01236	PRL_HUMAN	prolactin precursor	122					cell proliferation|cell surface receptor linked signaling pathway|female pregnancy|lactation|positive regulation of JAK-STAT cascade|regulation of multicellular organism growth	cytosol|extracellular region	hormone activity|prolactin receptor binding				0	Ovarian(93;0.163)					GATGATACAGAGGCTCATTCC	0.428000													16	70					0	0	1	0	0	
DCDC2	51473	broad.mit.edu	37	6	24178686	24178686	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:24178686G>A	uc003ndx.2	-	9	1500	c.1198C>T	c.(1198-1200)CGC>TGC	p.R400C	DCDC2_uc003ndy.2_Missense_Mutation_p.R400C|DCDC2_uc003ndw.2_Missense_Mutation_p.R151C	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	400					cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				CGAGCAGGGCGTGCCTGCTGC	0.517000													29	73					0	0	1	0	0	
HIST1H2AA	221613	broad.mit.edu	37	6	25726703	25726703	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:25726703C>T	uc003nfc.2	-	1	88	c.53G>A	c.(52-54)CGC>CAC	p.R18H	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	18					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCTAGAAGAGCGAGACTTAGA	0.547000													19	62					0	0	1	0	0	
HIST1H2BJ	8970	broad.mit.edu	37	6	27100268	27100268	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:27100268A>C	uc003niv.2	-	1	308	c.262T>G	c.(262-264)TCG>GCG	p.S88A	HIST1H2BJ_uc003niu.1_Intron|HIST1H2AG_uc003niw.2_5'Flank	NM_021058	NP_066402	P06899	H2B1J_HUMAN	histone cluster 1, H2bj	88					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						GTGATGGTCGAGCGCTTGTTG	0.597000													32	88					0	0	1	0	0	
TRIM26	7726	broad.mit.edu	37	6	30166507	30166507	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:30166507C>T	uc003npr.2	-	3	583	c.374G>A	c.(373-375)CGG>CAG	p.R125Q	TRIM26_uc003nps.2_Missense_Mutation_p.R125Q|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Missense_Mutation_p.R125Q|TRIM26_uc003npu.1_Missense_Mutation_p.R125Q	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	125	B box-type.						DNA binding|zinc ion binding			ovary(2)|lung(1)	3						CCGGGACTCCCGGCACATCAC	0.657000													16	24					0	0	1	0	0	
TRIM39	56658	broad.mit.edu	37	6	30314573	30314573	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:30314573T>C	uc010jsa.1	+	10	1505	c.1498T>C	c.(1498-1500)TCC>CCC	p.S500P	RPP21_uc003nqd.1_Missense_Mutation_p.S174P|RPP21_uc003nqe.1_Missense_Mutation_p.S151P|RPP21_uc003nqf.1_3'UTR	NM_172016	NP_742013	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 2	Error:Variant_position_missing_in_Q9HCM9_after_alignment					apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						GACTCAGGGTTCCAGTAACCA	0.428000													38	68					0	0	1	0	0	
DDR1	780	broad.mit.edu	37	6	30864441	30864441	+	Silent	SNP	G	A	A	rs139724741	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:30864441G>A	uc003nrr.2	+	14	1927	c.1668G>A	c.(1666-1668)CCG>CCA	p.P556P	DDR1_uc010jse.2_Silent_p.P519P|DDR1_uc003nrq.2_Silent_p.P519P|DDR1_uc003nrs.2_Silent_p.P556P|DDR1_uc003nrt.2_Silent_p.P519P|DDR1_uc011dms.1_Silent_p.P537P|DDR1_uc003nru.2_Silent_p.P519P|DDR1_uc003nrv.2_Silent_p.P556P|DDR1_uc003nrw.1_Intron|DDR1_uc003nry.1_Intron|DDR1_uc003nrx.1_Intron|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	556	Gly/Pro-rich.|Cytoplasmic (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CAGGCGCCCCGCTTCTGCCCC	0.617000													14	39					0	0	1	0	0	
DDR1	780	broad.mit.edu	37	6	30866732	30866732	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:30866732G>C	uc003nrr.2	+	18	2778	c.2519G>C	c.(2518-2520)TGT>TCT	p.C840S	DDR1_uc010jse.2_Missense_Mutation_p.C803S|DDR1_uc003nrq.2_Missense_Mutation_p.C803S|DDR1_uc003nrs.2_Missense_Mutation_p.C840S|DDR1_uc003nrt.2_Missense_Mutation_p.C803S|DDR1_uc011dms.1_Missense_Mutation_p.C821S|DDR1_uc003nru.2_Missense_Mutation_p.C803S|DDR1_uc003nrv.2_Missense_Mutation_p.C846S|DDR1_uc003nrz.1_Missense_Mutation_p.C165S	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	840	Cytoplasmic (Potential).|Protein kinase.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CTGATGCTCTGTAGGGCCCAG	0.622000													30	78					0	0	1	0	0	
GTF2H4	2968	broad.mit.edu	37	6	30881130	30881130	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:30881130G>A	uc003nsa.1	+	13	1389	c.1182G>A	c.(1180-1182)TGG>TGA	p.W394*	GTF2H4_uc003nsb.1_Nonsense_Mutation_p.W232*|GTF2H4_uc011dmw.1_3'UTR|VARS2_uc003nsc.1_5'Flank|VARS2_uc003nsd.2_5'Flank|VARS2_uc011dmx.1_5'Flank|VARS2_uc011dmy.1_5'Flank|VARS2_uc011dmz.1_5'Flank|VARS2_uc011dna.1_5'Flank|VARS2_uc011dnb.1_5'Flank|VARS2_uc011dnc.1_5'Flank	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	394					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						TCCGGCTCTGGGAGCTGGAAA	0.582000								NER					15	49					0	0	1	0	0	
BAT1	7919	broad.mit.edu	37	6	31504396	31504396	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:31504396G>A	uc003ntt.2	-	5	1128	c.497C>T	c.(496-498)CCG>CTG	p.P166L	BAT1_uc003ntr.2_5'Flank|BAT1_uc003nts.2_Missense_Mutation_p.P166L|BAT1_uc011dnn.1_Missense_Mutation_p.P88L|BAT1_uc003ntu.2_Missense_Mutation_p.P166L|BAT1_uc003ntv.2_Missense_Mutation_p.P166L|BAT1_uc003ntw.2_Missense_Mutation_p.P166L|BAT1_uc003ntx.2_Missense_Mutation_p.P166L|BAT1_uc011dno.1_Missense_Mutation_p.P119L|BAT1_uc011dnp.1_Missense_Mutation_p.P88L|SNORD117_uc003nty.1_5'Flank|BAT1_uc011dnq.1_RNA	NM_004640	NP_004631	Q13838	DX39B_HUMAN	HLA-B associated transcript 1	166	Helicase ATP-binding.				intronless viral mRNA export from host nucleus|RNA secondary structure unwinding|spliceosome assembly	nuclear speck|spliceosomal complex|transcription export complex	ATP binding|ATP-dependent protein binding|ATP-dependent RNA helicase activity|identical protein binding|U4 snRNA binding|U6 snRNA binding				0						GACGATATGCGGGCAGTTCTT	0.468000													6	81					0	0	1	0	0	
CFB	629	broad.mit.edu	37	6	31915553	31915553	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:31915553C>T	uc003nyj.3	+	5	971	c.693C>T	c.(691-693)GCC>GCT	p.A231A	CFB_uc011dor.1_Silent_p.A733A|CFB_uc003nyi.2_Silent_p.A231A	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	231					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						AAGAGGTGGCCGAAGCTTTCC	0.552000													60	148					0	0	1	0	0	
CFB	629	broad.mit.edu	37	6	31918490	31918490	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:31918490T>C	uc003nyj.3	+	13	1997	c.1719T>C	c.(1717-1719)TAT>TAC	p.Y573Y	CFB_uc011dor.1_Silent_p.Y1075Y	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	573	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CTGAATTTTATGACTATGACG	0.463000													43	91					0	0	1	0	0	
TNXB	7148	broad.mit.edu	37	6	32023712	32023712	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:32023712C>A	uc003nzl.2	-	24	8585	c.8383G>T	c.(8383-8385)GAG>TAG	p.E2795*		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2853	Fibronectin type-III 20.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGCCCGGGCTCCAGGCCCCCC	0.662000													10	33					1.76689e-08	1.83874e-08	1	1	0	
PSMB9	5698	broad.mit.edu	37	6	32823980	32823980	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:32823980A>G	uc003sga.2	+	3	165	c.90A>G	c.(88-90)GCA>GCG	p.A30A	TAP1_uc003ocg.2_5'Flank|PSMB9_uc011dqj.1_Silent_p.A42A	NM_148954	NP_683756	P28065	PSB9_HUMAN	proteasome beta 9 subunit isoform 2 proprotein	42					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0						GAGTGTCTGCAGGGTGAGTAA	0.418000													4	33					0	0	1	0	0	
WDR46	9277	broad.mit.edu	37	6	33255457	33255457	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:33255457G>A	uc003ods.2	-	7	706	c.662C>T	c.(661-663)GCC>GTC	p.A221V	WDR46_uc011dra.1_Missense_Mutation_p.A167V|WDR46_uc010juo.1_RNA|PFDN6_uc003odt.1_5'Flank|PFDN6_uc010jup.1_5'Flank	NM_005452	NP_005443	O15213	WDR46_HUMAN	WD repeat domain 46 isoform 1	221	WD 1.										0						CCAATCAAGGGCAGCCACATG	0.587000													15	29					0	0	1	0	0	
DAXX	1616	broad.mit.edu	37	6	33287482	33287482	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:33287482C>G	uc003oec.2	-	6	1819	c.1615G>C	c.(1615-1617)GCC>CCC	p.A539P	ZBTB22_uc003oeb.2_5'Flank|ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_Missense_Mutation_p.A464P|DAXX_uc011dre.1_Missense_Mutation_p.A551P|DAXX_uc003oed.2_Missense_Mutation_p.A539P	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	539	Asp/Glu-rich (acidic).|Interaction with MAP3K5.|Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						CTGGAGGGGGCCAGGGGTTCT	0.512000			Mis|F|N		Pancreatic neuroendocrine tumors								24	75					0	0	1	0	0	
ITPR3	3710	broad.mit.edu	37	6	33638469	33638469	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:33638469G>A	uc011drk.1	+	20	2682	c.2463G>A	c.(2461-2463)GCG>GCA	p.A821A		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	821	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						ACCTCAACGCGTCCCGAGATG	0.587000													15	50					0	0	1	0	0	
ITPR3	3710	broad.mit.edu	37	6	33657159	33657159	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:33657159C>A	uc011drk.1	+	50	7058	c.6839C>A	c.(6838-6840)CCC>CAC	p.P2280H	ITPR3_uc003oey.2_Missense_Mutation_p.P367H	NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	2280	Helical; (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GGCATCGGGCCCACACTCAAC	0.597000													14	36					1.49906e-05	1.53202e-05	1	1	0	
SCUBE3	222663	broad.mit.edu	37	6	35201059	35201059	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:35201059C>T	uc003okf.1	+	6	699	c.693C>T	c.(691-693)ACC>ACT	p.T231T	SCUBE3_uc003okg.1_Silent_p.T230T|SCUBE3_uc003okh.1_Silent_p.T102T	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	231	EGF-like 5.				protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						TGCTCCATACCGACGGGAAGA	0.602000													8	24					0	0	1	0	0	
CPNE5	57699	broad.mit.edu	37	6	36712850	36712850	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:36712850G>A	uc003omr.1	-	18	1473	c.1406C>T	c.(1405-1407)GCG>GTG	p.A469V	CPNE5_uc003omp.1_Missense_Mutation_p.A177V|CPNE5_uc010jwn.1_Missense_Mutation_p.A119V|CPNE5_uc003omq.1_Missense_Mutation_p.A119V	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	469	VWFA.									skin(1)	1						CTTGGTCTGCGCCATGTCCGA	0.612000													8	14					0	0	1	0	0	
FTSJD2	23070	broad.mit.edu	37	6	37443948	37443948	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:37443948C>T	uc003ons.2	+	20	2336	c.2083C>T	c.(2083-2085)CGG>TGG	p.R695W		NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	695					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CAAGCCTAGTCGGCCCGACAT	0.552000													25	69					0	0	1	0	0	
KCNK17	89822	broad.mit.edu	37	6	39272337	39272337	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:39272337G>A	uc003ooo.2	-	3	587	c.447C>T	c.(445-447)AAC>AAT	p.N149N	KCNK17_uc003oop.2_Silent_p.N149N	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	149	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						GCCCCAGTCGGTTGAGCACCA	0.642000													32	81					0	0	1	0	0	
KCNK16	83795	broad.mit.edu	37	6	39285600	39285600	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:39285600C>T	uc003ooq.2	-	3	471	c.457G>A	c.(457-459)GCC>ACC	p.A153T	KCNK16_uc003oor.3_Missense_Mutation_p.A153T|KCNK16_uc010jwy.2_Missense_Mutation_p.A153T|KCNK16_uc011dtz.1_Missense_Mutation_p.A153T	NM_032115	NP_115491	Q96T55	KCNKG_HUMAN	potassium channel, subfamily K, member 16	153	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity	p.A153T(1)		ovary(2)|skin(1)	3						CTTTCAATGGCGGCCAGATGG	0.552000													7	5					0	0	1	0	0	
PPP2R5D	5528	broad.mit.edu	37	6	42979003	42979003	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:42979003T>C	uc003oth.2	+	16	1874	c.1788T>C	c.(1786-1788)ACT>ACC	p.T596T	MEA1_uc010jyc.1_Intron|PPP2R5D_uc003otg.2_Silent_p.T564T|PPP2R5D_uc010jyd.2_Silent_p.T490T|PPP2R5D_uc011dva.1_Silent_p.T445T|PPP2R5D_uc003oti.2_Silent_p.T445T|PPP2R5D_uc003otj.2_Silent_p.T427T|KLHDC3_uc003otl.2_5'Flank|KLHDC3_uc003otm.2_5'Flank|KLHDC3_uc010jyf.2_5'Flank|KLHDC3_uc003otn.2_5'Flank	NM_006245	NP_006236	Q14738	2A5D_HUMAN	delta isoform of regulatory subunit B56, protein	596					nervous system development|signal transduction	cytoplasm|nucleus|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			breast(1)|central_nervous_system(1)	2			Colorectal(64;0.00237)|all cancers(41;0.00411)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0664)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			AGTTCCTAACTGCCAGCCAGG	0.627000													14	39					0	0	1	0	0	
CUL7	9820	broad.mit.edu	37	6	43008323	43008323	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:43008323A>C	uc003otq.2	-	21	4271	c.3968T>G	c.(3967-3969)CTC>CGC	p.L1323R	CUL7_uc010jyg.2_Missense_Mutation_p.L602R|CUL7_uc011dvb.1_Missense_Mutation_p.L1407R|CUL7_uc010jyh.2_Missense_Mutation_p.L316R|KLC4_uc003otr.1_5'Flank	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	1323					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CAGCTGCTGGAGCTGGTAGAC	0.562000													11	156					0	0	1	0	0	
CUL7	9820	broad.mit.edu	37	6	43010695	43010695	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:43010695G>A	uc003otq.2	-	19	3793	c.3490C>T	c.(3490-3492)CGG>TGG	p.R1164W	CUL7_uc010jyg.2_Missense_Mutation_p.R443W|CUL7_uc011dvb.1_Missense_Mutation_p.R1248W|CUL7_uc010jyh.2_Missense_Mutation_p.R157W|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	1164					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TCATCATCCCGCCAGGATGAG	0.532000													10	10					0	0	1	0	0	
POLH	5429	broad.mit.edu	37	6	43573039	43573039	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:43573039A>G	uc003ovq.3	+	9	1361	c.1057A>G	c.(1057-1059)ACT>GCT	p.T353A	POLH_uc010jyu.2_Missense_Mutation_p.T229A|POLH_uc011dvl.1_RNA|POLH_uc003ovr.3_Missense_Mutation_p.T254A	NM_006502	NP_006493	Q9Y253	POLH_HUMAN	DNA-directed DNA polymerase eta	353					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA repair|response to UV-C	cytoplasm|nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			breast(2)	2	all_cancers(18;1.89e-05)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000753)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			GGAGAGACTGACTAAAGACCG	0.378000								DNA_polymerases_(catalytic_subunits)	Xeroderma_Pigmentosum				5	19					0	0	1	0	0	
AARS2	57505	broad.mit.edu	37	6	44275065	44275065	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:44275065A>G	uc010jza.1	-	6	964	c.961T>C	c.(961-963)TAC>CAC	p.Y321H	SPATS1_uc003oxg.2_RNA|TMEM151B_uc003oxf.2_3'UTR	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	321					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	ACCACGCGGTACGCTGTGTCT	0.637000													6	13					0	0	1	0	0	
GPR116	221395	broad.mit.edu	37	6	46849830	46849830	+	Silent	SNP	G	A	A	rs140241968	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:46849830G>A	uc003oyo.3	-	7	916	c.627C>T	c.(625-627)TAC>TAT	p.Y209Y	GPR116_uc003oyp.3_Silent_p.Y209Y|GPR116_uc003oyq.3_Silent_p.Y209Y|GPR116_uc010jzi.1_5'Flank|GPR116_uc003oyr.2_Silent_p.Y209Y	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	209	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GTAAAATTCCGTAACCCTTCC	0.368000													10	154					0	0	1	0	0	
TFAP2D	83741	broad.mit.edu	37	6	50696967	50696967	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:50696967C>G	uc003paf.2	+	5	1337	c.825C>G	c.(823-825)AAC>AAG	p.N275K	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	275							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					TTGGCTTAAACTTACCAGCAG	0.418000													40	92					0	0	1	0	0	
TFAP2B	7021	broad.mit.edu	37	6	50811032	50811032	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:50811032C>T	uc003pag.2	+	7	1476	c.1310C>T	c.(1309-1311)ACC>ATC	p.T437I		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	437				QLCKEFTDLLAQDRTPIGNSRPSPILEPGIQSCLTHFSLIT HGFGAPAICAALTALQNYLTEALKGMDKMFLNNTTTNRHTS GEGPGSKTGDKEEKHRK -> GNFVKNLRIYWRRTGHR (in Ref. 1; CAA71047).	nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					AACAACACCACCACTAACAGG	0.512000													13	23					0	0	1	0	0	
PAQR8	85315	broad.mit.edu	37	6	52268987	52268987	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:52268987T>G	uc003pao.3	+	2	1150	c.976T>G	c.(976-978)TCC>GCC	p.S326A		NM_133367	NP_588608	Q8TEZ7	MPRB_HUMAN	progestin and adipoQ receptor family member	326	Helical; Name=7; (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding				0	Lung NSC(77;0.0875)					GGCCTGCCTCTCCTTCTTCTT	0.602000													8	14					0	0	1	0	0	
EYS	346007	broad.mit.edu	37	6	66205228	66205228	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:66205228G>A	uc011dxu.1	-	4	614	c.76C>T	c.(76-78)CGG>TGG	p.R26W	EYS_uc003peq.2_Missense_Mutation_p.R26W|EYS_uc003per.1_Missense_Mutation_p.R26W|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	26					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						ACCAATTGCCGTCTACATGTT	0.398000													34	71					0	0	1	0	0	
SMAP1	60682	broad.mit.edu	37	6	71566593	71566593	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:71566593T>G	uc003pfr.2	+	9	1069	c.821T>G	c.(820-822)CTG>CGG	p.L274R	SMAP1_uc003pfs.2_Missense_Mutation_p.L247R|SMAP1_uc010kao.2_Missense_Mutation_p.L247R|SMAP1_uc010kap.2_Missense_Mutation_p.L264R	NM_001044305	NP_001037770	Q8IYB5	SMAP1_HUMAN	stromal membrane-associated GTPase-activating	274					regulation of ARF GTPase activity	plasma membrane	ARF GTPase activator activity|zinc ion binding				0						GCTGCAACCCTGTCTACAGTA	0.403000													24	53					0	0	1	0	0	
MTO1	25821	broad.mit.edu	37	6	74190493	74190493	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:74190493A>G	uc003pgy.3	+	8	1424	c.1300A>G	c.(1300-1302)AAT>GAT	p.N434D	MTO1_uc010kav.2_Missense_Mutation_p.N409D|MTO1_uc003pgz.3_Missense_Mutation_p.N409D|MTO1_uc003pha.3_Missense_Mutation_p.N71D|MTO1_uc003phb.3_Missense_Mutation_p.N360D|MTO1_uc010kaw.1_RNA	NM_133645	NP_598400	Q9Y2Z2	MTO1_HUMAN	mitochondrial translation optimization 1 homolog	434					tRNA processing	mitochondrion	flavin adenine dinucleotide binding			ovary(3)|skin(2)|pancreas(1)	6						TGGACAGATCAATGGCACCAC	0.418000													24	68					0	0	1	0	0	
COL12A1	1303	broad.mit.edu	37	6	75875409	75875409	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:75875409G>A	uc003phs.2	-	14	2963	c.2797C>T	c.(2797-2799)CGC>TGC	p.R933C	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	933	Fibronectin type-III 6.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CTGTAACCGCGAACCATTCCT	0.403000													27	93					0	0	1	0	0	
LCA5	167691	broad.mit.edu	37	6	80197138	80197138	+	Silent	SNP	C	T	T	rs144098531		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:80197138C>T	uc003pix.2	-	8	2112	c.1677G>A	c.(1675-1677)TCG>TCA	p.S559S	LCA5_uc003piy.2_Silent_p.S559S	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	559					protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		TTTTTGCAAACGAAGGCACGT	0.383000													20	70					0	0	1	0	0	
ELOVL4	6785	broad.mit.edu	37	6	80656932	80656932	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:80656932G>A	uc003pja.3	-	1	384	c.65C>T	c.(64-66)ACG>ATG	p.T22M	ELOVL4_uc011dyt.1_RNA	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	22					fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	GAACTCTACCGTGTCGTTGAG	0.667000													3	10					0	0	1	0	0	
DOPEY1	23033	broad.mit.edu	37	6	83877689	83877689	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:83877689A>G	uc003pjs.1	+	39	7461	c.7201A>G	c.(7201-7203)AAT>GAT	p.N2401D	DOPEY1_uc011dyy.1_Missense_Mutation_p.N2412D|DOPEY1_uc010kbl.1_Missense_Mutation_p.N2392D|DOPEY1_uc003pjt.2_RNA|uc003pju.1_5'Flank	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	2401					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		GCCGTTCTTCAATGTGCTCAG	0.522000													23	29					0	0	1	0	0	
PRSS35	167681	broad.mit.edu	37	6	84233970	84233970	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:84233970C>T	uc003pjz.2	+	2	973	c.810C>T	c.(808-810)GAC>GAT	p.D270D	PRSS35_uc010kbm.2_Silent_p.D270D	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	270	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		GCATGGGGGACGCTACCTTGG	0.542000													9	47					0	0	1	0	0	
SPACA1	81833	broad.mit.edu	37	6	88769196	88769196	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:88769196C>T	uc003pmn.2	+	5	617	c.500C>T	c.(499-501)TCA>TTA	p.S167L		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	167	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		GTAAATGATTCAGCAATCCTA	0.318000													12	28					0	0	1	0	0	
MDN1	23195	broad.mit.edu	37	6	90383871	90383871	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:90383871T>C	uc003pnn.1	-	79	13315	c.13199A>G	c.(13198-13200)GAC>GGC	p.D4400G		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4400					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TTTGTCGACGTCAGCTTTCAC	0.433000													7	28					0	0	1	0	0	
GRIK2	2898	broad.mit.edu	37	6	102074496	102074496	+	Silent	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:102074496G>C	uc003pqp.3	+	3	774	c.525G>C	c.(523-525)GTG>GTC	p.V175V	GRIK2_uc003pqn.2_Silent_p.V175V|GRIK2_uc003pqo.3_Silent_p.V175V|GRIK2_uc010kcw.2_Silent_p.V175V	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	175	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	TCACGGTTGTGTATGATGACA	0.393000													25	39					0	0	1	0	0	
RNF217	154214	broad.mit.edu	37	6	125402611	125402611	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:125402611A>G	uc003pzs.2	+	7	975	c.637A>G	c.(637-639)ATG>GTG	p.M213V	RNF217_uc003pzr.2_Missense_Mutation_p.M270V|RNF217_uc003pzt.2_RNA	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	213	Helical; (Potential).				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		ACCTCTAATTATGGTTTTGGG	0.368000													14	29					0	0	1	0	0	
FAM54A	113115	broad.mit.edu	37	6	136560840	136560840	+	Silent	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:136560840A>T	uc010kgp.1	-	6	1023	c.633T>A	c.(631-633)CCT>CCA	p.P211P	FAM54A_uc003qgt.1_Silent_p.P211P|FAM54A_uc003qgu.1_Silent_p.P168P	NM_001099286	NP_001092756	Q6P444	FA54A_HUMAN	DUF729 domain containing 1	211	Pro-rich.									skin(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00228)|OV - Ovarian serous cystadenocarcinoma(155;0.00504)		gaagtggtggaggaggaggag	0.418000													18	32					0	0	1	0	0	
RAB32	10981	broad.mit.edu	37	6	146865194	146865194	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:146865194G>A	uc003qln.1	+	1	367	c.187G>A	c.(187-189)GCC>ACC	p.A63T		NM_006834	NP_006825	Q13637	RAB32_HUMAN	RAB32, member RAS oncogene family	63					protein transport|small GTPase mediated signal transduction	mitochondrion	GTP binding				0		Ovarian(120;0.142)		OV - Ovarian serous cystadenocarcinoma(155;2.68e-09)|GBM - Glioblastoma multiforme(68;0.00608)		GGTGGACTTCGCCCTCAAGGT	0.652000													8	22					0	0	1	0	0	
ZC3H12D	340152	broad.mit.edu	37	6	149777984	149777984	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:149777984C>T	uc003qmn.1	-	3	568	c.498G>A	c.(496-498)CCG>CCA	p.P166P	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Silent_p.P166P|ZC3H12D_uc010kid.2_Silent_p.P166P	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	166						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		CCTTGCGGGACGGCGTGTACA	0.687000													9	32					0	0	1	0	0	
ZBTB2	57621	broad.mit.edu	37	6	151694619	151694619	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:151694619A>G	uc003qoh.2	-	2	289	c.154T>C	c.(154-156)TTG>CTG	p.L52L		NM_020861	NP_065912	Q8N680	ZBTB2_HUMAN	zinc finger and BTB domain containing 2	52	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.63e-11)		TGGACAAACAACATCTTAAAG	0.433000													35	55					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152826425	152826425	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:152826425A>G	uc010kiw.2	-	9	1291	c.689T>C	c.(688-690)GTG>GCG	p.V230A	SYNE1_uc003qot.3_Missense_Mutation_p.V237A|SYNE1_uc003qou.3_Missense_Mutation_p.V230A|SYNE1_uc010kjb.1_Missense_Mutation_p.V230A|SYNE1_uc003qpa.1_Missense_Mutation_p.V230A	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	230	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCTGCCTTTCACTGTCTCCAA	0.463000										HNSCC(10;0.0054)			21	44					0	0	1	0	0	
VIP	7432	broad.mit.edu	37	6	153078261	153078261	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:153078261A>C	uc003qpe.2	+	6	670	c.498A>C	c.(496-498)GAA>GAC	p.E166D	VIP_uc003qpf.2_Missense_Mutation_p.E165D|VIP_uc010kjd.2_Missense_Mutation_p.E164D	NM_003381	NP_003372	P01282	VIP_HUMAN	vasoactive intestinal peptide isoform 1	166					body fluid secretion|G-protein coupled receptor protein signaling pathway|positive regulation of cell proliferation	extracellular region	neuropeptide hormone activity				0		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;4.5e-11)|BRCA - Breast invasive adenocarcinoma(81;0.144)		ACTTTCCAGAAGAGTTAGAAA	0.408000													14	23					0	0	1	0	0	
ARID1B	57492	broad.mit.edu	37	6	157511235	157511235	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:157511235G>T	uc003qqn.2	+	15	3851	c.3699G>T	c.(3697-3699)CGG>CGT	p.R1233R	ARID1B_uc003qqo.2_Silent_p.R1193R|ARID1B_uc003qqp.2_Silent_p.R1180R	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1238					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		TCCCGAAACGGAACTCCATGA	0.517000													45	100					6.4771e-29	7.03911e-29	1	1	0	
TULP4	56995	broad.mit.edu	37	6	158900999	158900999	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:158900999A>G	uc003qrf.2	+	7	2600	c.1243A>G	c.(1243-1245)ACC>GCC	p.T415A	TULP4_uc011efo.1_Missense_Mutation_p.T415A|TULP4_uc003qrg.2_Missense_Mutation_p.T415A	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	415					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CTTCATCCCCACCATCAAGGT	0.632000													14	38					0	0	1	0	0	
FNDC1	84624	broad.mit.edu	37	6	159652977	159652977	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:159652977C>A	uc010kjv.2	+	11	1633	c.1433C>A	c.(1432-1434)TCC>TAC	p.S478Y	FNDC1_uc010kjw.1_Missense_Mutation_p.S363Y	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	478						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CCTGAGCCTTCCTCACCTTCT	0.507000													13	19					9.16793e-09	9.55196e-09	1	1	0	
SFT2D1	113402	broad.mit.edu	37	6	166738057	166738057	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:166738057T>A	uc003qux.2	-	6	408	c.378A>T	c.(376-378)TTA>TTT	p.L126F		NM_145169	NP_660152	Q8WV19	SFT2A_HUMAN	SFT2 domain containing 1	126	Helical; Name=4; (Potential).				protein transport|vesicle-mediated transport	integral to membrane				central_nervous_system(1)	1		Breast(66;0.000148)|Prostate(117;0.109)|Ovarian(120;0.199)		OV - Ovarian serous cystadenocarcinoma(33;2.63e-19)|BRCA - Breast invasive adenocarcinoma(81;4.92e-06)|GBM - Glioblastoma multiforme(31;4.58e-05)		ATATGCAGAATAACACAGCCA	0.373000													18	40					0	0	1	0	0	
C7orf50	84310	broad.mit.edu	37	7	1049694	1049694	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:1049694T>C	uc003sju.2	-	3	285	c.215A>G	c.(214-216)AAG>AGG	p.K72R	C7orf50_uc003sjs.2_RNA|C7orf50_uc011jvt.1_Missense_Mutation_p.K72R|C7orf50_uc011jvu.1_Missense_Mutation_p.K72R	NM_032350	NP_115726	Q9BRJ6	CG050_HUMAN	hypothetical protein LOC84310	72							protein binding				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0216)|OV - Ovarian serous cystadenocarcinoma(56;1.3e-15)		CTTCCGTTCCTTTTTCAGCTT	0.647000													20	20					0	0	1	0	0	
INTS1	26173	broad.mit.edu	37	7	1539921	1539921	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:1539921C>T	uc003skn.2	-	4	532	c.431G>A	c.(430-432)GGG>GAG	p.G144E	INTS1_uc003skq.2_Missense_Mutation_p.G144E	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	144					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CTTCACGGCCCCGCACAGCAC	0.647000													3	3					0	0	1	0	0	
MAD1L1	8379	broad.mit.edu	37	7	2108877	2108877	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:2108877G>A	uc003slh.1	-	12	1436	c.1170C>T	c.(1168-1170)CAC>CAT	p.H390H	MAD1L1_uc003sle.1_Silent_p.H119H|MAD1L1_uc003slf.1_Silent_p.H390H|MAD1L1_uc003slg.1_Silent_p.H390H|MAD1L1_uc010ksh.1_Silent_p.H390H|MAD1L1_uc003sli.1_Silent_p.H298H|MAD1L1_uc010ksi.1_Silent_p.H343H|MAD1L1_uc010ksj.2_Silent_p.H390H	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	390	Necessary for interaction with NEK2.|Potential.				cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		CCAGCGCCTCGTGGGTCTCGC	0.657000													35	34					0	0	1	0	0	
ISPD	729920	broad.mit.edu	37	7	16445839	16445839	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:16445839G>A	uc010ktx.2	-	2	381	c.381C>T	c.(379-381)CAC>CAT	p.H127H	ISPD_uc010kty.2_Silent_p.H127H	NM_001101426	NP_001094896	A4D126	ISPD_HUMAN	notch1-induced protein isoform a	127					isoprenoid biosynthetic process		nucleotidyltransferase activity			ovary(1)	1						AAATTGACCTGTGGCGGGTCA	0.423000										Multiple Myeloma(15;0.18)			14	67					0	0	1	0	0	
TWIST1	7291	broad.mit.edu	37	7	19156599	19156599	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:19156599G>A	uc003sum.2	-	1	697	c.346C>T	c.(346-348)CGG>TGG	p.R116W		NM_000474	NP_000465	Q15672	TWST1_HUMAN	twist	116	Basic motif.				aortic valve morphogenesis|cellular response to hypoxia|embryonic camera-type eye formation|embryonic cranial skeleton morphogenesis|eyelid development in camera-type eye|muscle organ development|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of histone phosphorylation|negative regulation of osteoblast differentiation|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of cell motility|positive regulation of epithelial to mesenchymal transition|positive regulation of fatty acid beta-oxidation|positive regulation of monocyte chemotactic protein-1 production|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of tumor necrosis factor production|regulation of bone mineralization	nucleus	bHLH transcription factor binding|E-box binding|sequence-specific DNA binding RNA polymerase II transcription factor activity				0						TGGCGCTCCCGCACGTTGGCC	0.498000									Saethre-Chotzen_syndrome				4	11					0	0	1	0	0	
SP8	221833	broad.mit.edu	37	7	20824269	20824269	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:20824269C>T	uc003suy.2	-	3	1354	c.1113G>A	c.(1111-1113)TCG>TCA	p.S371S	SP8_uc003suz.2_Silent_p.S389S	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	371					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CCTTGAGGTGCGAAGTCTTGC	0.697000													5	13					0	0	1	0	0	
TAX1BP1	8887	broad.mit.edu	37	7	27824919	27824919	+	Silent	SNP	C	T	T	rs139970643	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:27824919C>T	uc003szl.2	+	6	908	c.750C>T	c.(748-750)ACC>ACT	p.T250T	TAX1BP1_uc011jzo.1_Silent_p.T250T|TAX1BP1_uc003szk.2_Silent_p.T250T|TAX1BP1_uc011jzp.1_Silent_p.T93T	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	250	Potential.				anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			AAAAAGAAACCGAATTAGACA	0.269000													21	40					0	0	1	0	0	
NOD1	10392	broad.mit.edu	37	7	30485816	30485816	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:30485816A>G	uc003tav.2	-	9	2917	c.2394T>C	c.(2392-2394)AGT>AGC	p.S798S		NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	798	LRR 5.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						TCCCTCCTTCACTTGTTATTT	0.512000													46	106					0	0	1	0	0	
GLI3	2737	broad.mit.edu	37	7	42007509	42007509	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:42007509T>A	uc011kbh.1	-	14	2207	c.2116A>T	c.(2116-2118)AGC>TGC	p.S706C	GLI3_uc011kbg.1_Missense_Mutation_p.S647C	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	706					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CCACCAGGGCTTGGCTGAGAT	0.517000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				25	69					0	0	1	0	0	
AEBP1	165	broad.mit.edu	37	7	44148743	44148743	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:44148743G>T	uc003tkb.2	+	8	1361	c.1056G>T	c.(1054-1056)GAG>GAT	p.E352D	AEBP1_uc003tkc.3_5'Flank|AEBP1_uc003tkd.2_5'Flank	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	352					cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCAAGGAGGAGACCGACAAGT	0.617000													7	18					0.000673444	0.000680768	1	1	0	
PURB	5814	broad.mit.edu	37	7	44924585	44924585	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:44924585G>A	uc003tme.2	-	1	376	c.363C>T	c.(361-363)AGC>AGT	p.S121S		NM_033224	NP_150093	Q96QR8	PURB_HUMAN	purine-rich element binding protein B	121	By similarity.				regulation of myeloid cell differentiation	DNA replication factor A complex	mRNA binding|single-stranded DNA binding|transcription factor binding				0						CCAAGAATTCGCTCTTGAgcg	0.567000													3	5					0	0	1	0	0	
CCM2	83605	broad.mit.edu	37	7	45115623	45115623	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:45115623G>A	uc003tmo.2	+	10	1448	c.1302G>A	c.(1300-1302)GCG>GCA	p.A434A	CCM2_uc003tmn.2_RNA|CCM2_uc003tmp.2_Silent_p.A376A|CCM2_uc003tmq.2_RNA|CCM2_uc003tmr.2_Silent_p.A343A|CCM2_uc003tms.2_Silent_p.A455A	NM_031443	NP_113631	Q9BSQ5	CCM2_HUMAN	cerebral cavernous malformation 2 isoform 2	434					endothelial tube morphogenesis|integrin-mediated signaling pathway|stress-activated MAPK cascade|vasculogenesis	cytoplasm	protein binding				0						ACATTGAGGCGCTGGGCTGCA	0.632000									Familial_Cerebral_Cavernous_Angioma				11	20					0	0	1	0	0	
ABCA13	154664	broad.mit.edu	37	7	48412044	48412044	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:48412044G>A	uc003toq.2	+	33	11108	c.11083G>A	c.(11083-11085)GTT>ATT	p.V3695I	ABCA13_uc010kys.1_Missense_Mutation_p.V769I|ABCA13_uc003tos.1_Missense_Mutation_p.V521I	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3695	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GCCCTACATAGTTCTATTGGT	0.363000													32	68					0	0	1	0	0	
ABCA13	154664	broad.mit.edu	37	7	48520733	48520733	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:48520733C>T	uc003toq.2	+	46	13101	c.13076C>T	c.(13075-13077)GCA>GTA	p.A4359V	ABCA13_uc010kys.1_Missense_Mutation_p.A1434V|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.A89V	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4359					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TACTTGCTGGCACCATCTGAA	0.408000													4	4					0	0	1	0	0	
FIGNL1	63979	broad.mit.edu	37	7	50513345	50513345	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:50513345C>T	uc003tpc.2	-	4	2018	c.1641G>A	c.(1639-1641)CGG>CGA	p.R547R	FIGNL1_uc003tpb.2_Silent_p.R436R|FIGNL1_uc003tpd.2_Silent_p.R547R|FIGNL1_uc003tpe.2_Silent_p.R547R|FIGNL1_uc010kyy.2_Silent_p.R547R	NM_001042762	NP_001036227	Q6PIW4	FIGL1_HUMAN	fidgetin-like 1	547					ATP metabolic process|negative regulation of apoptosis|osteoblast differentiation|osteoblast proliferation|regulation of cell cycle	cytoplasm|nucleus	ATP binding|magnesium ion binding|nucleoside-triphosphatase activity			ovary(3)	3	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;3.73e-08)|all_hematologic(4;7.51e-06)				TTTCTTGTGGCCGATTTGTTG	0.398000													43	107					0	0	1	0	0	
FIGNL1	63979	broad.mit.edu	37	7	50514882	50514882	+	Missense_Mutation	SNP	C	T	T	rs146011869		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:50514882C>T	uc003tpc.2	-	4	481	c.104G>A	c.(103-105)CGT>CAT	p.R35H	FIGNL1_uc003tpb.2_Translation_Start_Site|FIGNL1_uc003tpd.2_Missense_Mutation_p.R35H|FIGNL1_uc003tpe.2_Missense_Mutation_p.R35H|FIGNL1_uc010kyy.2_Missense_Mutation_p.R35H	NM_001042762	NP_001036227	Q6PIW4	FIGL1_HUMAN	fidgetin-like 1	35					ATP metabolic process|negative regulation of apoptosis|osteoblast differentiation|osteoblast proliferation|regulation of cell cycle	cytoplasm|nucleus	ATP binding|magnesium ion binding|nucleoside-triphosphatase activity			ovary(3)	3	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;3.73e-08)|all_hematologic(4;7.51e-06)				TATCTGTGCACGGTATGCATC	0.448000													24	40					0	0	1	0	0	
AUTS2	26053	broad.mit.edu	37	7	70229927	70229927	+	Silent	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:70229927T>A	uc003tvw.3	+	8	2147	c.1404T>A	c.(1402-1404)CCT>CCA	p.P468P	AUTS2_uc003tvx.3_Silent_p.P468P|AUTS2_uc011keg.1_5'Flank	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	468										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CTCTGCCTCCTCCACCACCAC	0.423000													13	37					0	0	1	0	0	
NCF1B	654816	broad.mit.edu	37	7	72640036	72640036	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:72640036T>C	uc011kes.1	+	3	271	c.267T>C	c.(265-267)CTT>CTC	p.L89L	FKBP6_uc003twz.2_Intron|NCF1B_uc011ker.1_Silent_p.L91L	NM_000265	NP_000256			neutrophil cytosolic factor 1												0						CCCACCTCCTTGACTTCTTCA	0.507000													3	25					0	0	1	0	0	
GTF2IRD1	9569	broad.mit.edu	37	7	73933979	73933979	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:73933979C>T	uc003uaq.2	+	6	1239	c.846C>T	c.(844-846)AGC>AGT	p.S282S	GTF2IRD1_uc010lbq.2_Silent_p.S314S|GTF2IRD1_uc003uap.2_Silent_p.S282S|GTF2IRD1_uc003uar.1_Silent_p.S282S	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	282						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						TTGCCCCCAGCGACCTGGGCC	0.632000													10	45					0	0	1	0	0	
SPDYE5	442590	broad.mit.edu	37	7	75124536	75124536	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:75124536G>A	uc011kfy.1	+	1	238	c.102G>A	c.(100-102)TGG>TGA	p.W34*		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	34											0						AGAGGGAGTGGTCAGATGAAT	0.582000													20	35					0	0	1	0	0	
STYXL1	51657	broad.mit.edu	37	7	75633097	75633097	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:75633097G>A	uc003uej.3	-	7	849	c.676C>T	c.(676-678)CGC>TGC	p.R226C	STYXL1_uc003uef.2_Missense_Mutation_p.R32C|STYXL1_uc011kgf.1_Missense_Mutation_p.R88C|STYXL1_uc011kgg.1_Missense_Mutation_p.R78C|STYXL1_uc003ueh.2_Missense_Mutation_p.R88C|STYXL1_uc003uek.3_Missense_Mutation_p.R130C|STYXL1_uc003uel.2_Missense_Mutation_p.R226C|STYXL1_uc003uem.2_Missense_Mutation_p.R226C|STYXL1_uc010ldg.1_RNA|STYXL1_uc010ldh.1_Missense_Mutation_p.R226C|STYXL1_uc003uen.1_Missense_Mutation_p.R226C	NM_016086	NP_057170	Q9Y6J8	STYL1_HUMAN	map kinase phosphatase-like protein MK-STYX	226	Tyrosine-protein phosphatase.				intracellular signal transduction|protein dephosphorylation	intracellular	protein binding|protein tyrosine/serine/threonine phosphatase activity				0						CACATGTGGCGTAAGAAGGGA	0.557000													15	29					0	0	1	0	0	
DTX2	113878	broad.mit.edu	37	7	76112200	76112200	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:76112200G>A	uc003uff.3	+	5	1200	c.644G>A	c.(643-645)CGC>CAC	p.R215H	DTX2_uc011kgk.1_Missense_Mutation_p.R124H|DTX2_uc003ufg.3_Missense_Mutation_p.R215H|DTX2_uc003ufh.3_Missense_Mutation_p.R215H|DTX2_uc003ufj.3_Missense_Mutation_p.R215H	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	215					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						GGCCGCTACCGCCACTCCATG	0.657000													33	97					0	0	1	0	0	
LOC100132832	100132832	broad.mit.edu	37	7	76669341	76669341	+	RNA	SNP	C	T	T	rs138741108	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:76669341C>T	uc003ufy.2	+	1		c.545C>T			PMS2L11_uc011kgn.1_RNA	NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						GCAGGTGGTACTGAGTCTAAG	0.418000													5	6					0	0	1	0	0	
RSBN1L	222194	broad.mit.edu	37	7	77379032	77379032	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:77379032G>A	uc010ldt.1	+	3	1039	c.995G>A	c.(994-996)CGA>CAA	p.R332Q	RSBN1L_uc003ugm.2_Missense_Mutation_p.R114Q	NM_198467	NP_940869	Q6PCB5	RSBNL_HUMAN	round spermatid basic protein 1-like	332						nucleus				ovary(1)	1						AAGGAGCCACGAGTTCAGAAT	0.388000													25	53					0	0	1	0	0	
GNAT3	346562	broad.mit.edu	37	7	80141143	80141143	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:80141143C>T	uc011kgu.1	-	1	100	c.100G>A	c.(100-102)GTA>ATA	p.V34I	CD36_uc003uhc.2_Intron	NM_001102386	NP_001095856	A8MTJ3	GNAT3_HUMAN	guanine nucleotide binding protein, alpha	34					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction|sensory perception of sweet taste|sensory perception of umami taste	cytoplasm|heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						AGCAGCTTTACGGTTCTTGCA	0.368000													7	20					0	0	1	0	0	
CACNA2D1	781	broad.mit.edu	37	7	81591314	81591314	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:81591314C>T	uc003uhr.1	-	36	3118	c.2862G>A	c.(2860-2862)ACG>ACA	p.T954T	CACNA2D1_uc011kgy.1_Silent_p.T166T	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	966	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	ACAGGGAGGCCGTGAAGTCAT	0.478000													16	43					0	0	1	0	0	
SEMA3A	10371	broad.mit.edu	37	7	83634741	83634741	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:83634741G>A	uc003uhz.2	-	11	1589	c.1274C>T	c.(1273-1275)ACG>ATG	p.T425M		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	425	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						ATTTACATCCGTTTTGATCAC	0.368000													28	71					0	0	1	0	0	
ABCB4	5244	broad.mit.edu	37	7	87032525	87032525	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:87032525G>A	uc003uiv.1	-	27	3656	c.3580C>T	c.(3580-3582)CGA>TGA	p.R1194*	ABCB4_uc003uiw.1_Nonsense_Mutation_p.R1187*|ABCB4_uc003uix.1_Nonsense_Mutation_p.R1140*	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1194	ABC transporter 2.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					ATGAGGGCTCGGGCAATAGCA	0.438000													44	124					0	0	1	0	0	
ABCB1	5243	broad.mit.edu	37	7	87160650	87160650	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:87160650T>C	uc003uiz.1	-	22	3063	c.2645A>G	c.(2644-2646)CAA>CGA	p.Q882R	ABCB1_uc011khc.1_Missense_Mutation_p.Q818R	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	882	ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTTCAGTGCTTGTCCAGACAA	0.343000													40	94					0	0	1	0	0	
AKAP9	10142	broad.mit.edu	37	7	91670110	91670110	+	Silent	SNP	G	A	A	rs141237587		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:91670110G>A	uc003ulg.2	+	18	5040	c.4815G>A	c.(4813-4815)ACG>ACA	p.T1605T	AKAP9_uc003ule.2_Silent_p.T1617T|AKAP9_uc003ulf.2_Silent_p.T1605T|AKAP9_uc003uli.2_Silent_p.T1230T	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1617	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AACAGGCAACGGAATTGTTAA	0.418000			T	BRAF	papillary thyroid								13	24					0	0	1	0	0	
PEX1	5189	broad.mit.edu	37	7	92146932	92146932	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:92146932G>A	uc003uly.2	-	5	993	c.897C>T	c.(895-897)AAC>AAT	p.N299N	PEX1_uc011khr.1_Silent_p.N91N|PEX1_uc010ley.2_Silent_p.N299N|PEX1_uc011khs.1_Intron|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	299					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TTGCTGACGCGTTATATATAC	0.368000													17	54					0	0	1	0	0	
C7orf64	84060	broad.mit.edu	37	7	92158877	92158877	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:92158877G>A	uc003ulz.2	+	2	240	c.199G>A	c.(199-201)GCT>ACT	p.A67T	PEX1_uc003uly.2_5'Flank|PEX1_uc011khr.1_5'Flank|PEX1_uc010ley.2_5'Flank|PEX1_uc011khs.1_5'Flank|C7orf64_uc011khu.1_Missense_Mutation_p.A67T|C7orf64_uc003uma.2_Missense_Mutation_p.A67T	NM_032120	NP_115496	Q5RL73	CG064_HUMAN	hypothetical protein LOC84060	67							nucleotide binding			ovary(2)	2						TGAGCGATTCGCTTTATATGG	0.348000													21	53					0	0	1	0	0	
CALCR	799	broad.mit.edu	37	7	93072952	93072952	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:93072952T>A	uc003umv.1	-	10	1129	c.868A>T	c.(868-870)AAG>TAG	p.K290*	CALCR_uc011kia.1_Nonsense_Mutation_p.K70*|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Nonsense_Mutation_p.K256*|CALCR_uc003umw.2_Nonsense_Mutation_p.K256*	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	272	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	AAGCGTTGCTTCTCAGTAAAC	0.443000													25	74					0	0	1	0	0	
SGCE	8910	broad.mit.edu	37	7	94257549	94257549	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:94257549T>C	uc003unl.2	-	3	466	c.355A>G	c.(355-357)ACA>GCA	p.T119A	SGCE_uc003unm.2_Missense_Mutation_p.T119A|SGCE_uc003unn.2_Missense_Mutation_p.T119A|SGCE_uc011kic.1_Missense_Mutation_p.T78A|SGCE_uc011kid.1_Missense_Mutation_p.T155A	NM_003919	NP_003910	O43556	SGCE_HUMAN	sarcoglycan, epsilon isoform 2	119	Extracellular (Potential).				cell-matrix adhesion|muscle organ development	cytoplasm|cytoskeleton|integral to plasma membrane|sarcoglycan complex|sarcolemma	calcium ion binding			ovary(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			TTTTCAGCTGTTGGGGACCCA	0.338000													4	20					0	0	1	0	0	
OCM2	4951	broad.mit.edu	37	7	97616448	97616448	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:97616448T>C	uc003upc.2	-	3	215	c.215A>G	c.(214-216)GAG>GGG	p.E72G		NM_006188	NP_006179	P0CE71	OCM2_HUMAN	oncomodulin-like	72	EF-hand 1.						calcium ion binding				0						GGCACCACTCTCAAACTTCTG	0.448000													15	16					0	0	1	0	0	
ZNF498	221785	broad.mit.edu	37	7	99226971	99226971	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:99226971G>A	uc003url.1	+	8	1290	c.963G>A	c.(961-963)GCG>GCA	p.A321A	ZNF498_uc003urm.1_Silent_p.A157A|ZNF498_uc010lge.1_Silent_p.A157A|ZNF498_uc003urn.2_Intron|ZNF498_uc010lgf.1_Silent_p.A249A|ZNF498_uc003uro.1_Silent_p.A105A	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	321					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					CAGGCAGTGCGCCTGGGCTTC	0.637000													23	47					0	0	1	0	0	
AZGP1	563	broad.mit.edu	37	7	99565777	99565777	+	Splice_Site	SNP	C	T	T	rs112067579		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:99565777C>T	uc003ush.2	-	3	657	c.613_splice	c.e3+1	p.D205_splice		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc						antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					GCAGTGAGTACCTTGCCGGTC	0.542000													5	70					0	0	1	0	0	
MCM7	4176	broad.mit.edu	37	7	99695354	99695354	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:99695354C>T	uc003usw.1	-	9	1510	c.1000G>A	c.(1000-1002)GAA>AAA	p.E334K	MCM7_uc003usv.1_Missense_Mutation_p.E158K|MCM7_uc003usx.1_Missense_Mutation_p.E158K	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	334	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	GCCAGCTTTTCGTAGAAATCC	0.507000													56	217					0	0	1	0	0	
GNB2	2783	broad.mit.edu	37	7	100274189	100274189	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:100274189T>C	uc003uwb.2	+	3	362	c.89T>C	c.(88-90)CTG>CCG	p.L30P	GNB2_uc003uwc.2_5'UTR|GNB2_uc010lhd.2_5'UTR|GNB2_uc010lhe.2_Intron|GNB2_uc003uwd.2_Intron|GNB2_uc010lhf.2_Intron|GNB2_uc003uwe.2_Missense_Mutation_p.L30P|GNB2_uc003uwf.2_5'Flank	NM_005273	NP_005264	P62879	GBB2_HUMAN	guanine nucleotide-binding protein, beta-2	30					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	perinuclear region of cytoplasm|plasma membrane	GTPase activity|GTPase binding|signal transducer activity			ovary(2)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)	Ovarian(593;0.238)				GACTCAACACTGACCCAGGTG	0.602000													16	58					0	0	1	0	0	
GNB2	2783	broad.mit.edu	37	7	100276158	100276158	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:100276158G>A	uc003uwb.2	+	9	1110	c.837G>A	c.(835-837)TCG>TCA	p.S279S	GNB2_uc003uwc.2_Silent_p.S235S|GNB2_uc010lhd.2_Silent_p.S235S|GNB2_uc010lhe.2_Silent_p.S235S|GNB2_uc003uwd.2_Silent_p.S179S|GNB2_uc010lhf.2_Silent_p.S179S|GNB2_uc003uwe.2_Silent_p.S279S|GNB2_uc003uwf.2_Silent_p.S179S	NM_005273	NP_005264	P62879	GBB2_HUMAN	guanine nucleotide-binding protein, beta-2	279	WD 6.				cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	perinuclear region of cytoplasm|plasma membrane	GTPase activity|GTPase binding|signal transducer activity			ovary(2)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)	Ovarian(593;0.238)				TTGCCTTCTCGCGCAGCGGAC	0.622000													19	12					0	0	1	0	0	
GIGYF1	64599	broad.mit.edu	37	7	100281714	100281714	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:100281714C>T	uc003uwg.1	-	15	2806	c.1797G>A	c.(1795-1797)CCG>CCA	p.P599P		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	599	Poly-Pro.|Gln-rich.									large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GTGGCGGCGGCGGTGGTGGCG	0.672000													6	17					0	0	1	0	0	
GIGYF1	64599	broad.mit.edu	37	7	100283065	100283065	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:100283065T>C	uc003uwg.1	-	10	2103	c.1094A>G	c.(1093-1095)AAG>AGG	p.K365R		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	365										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GGAGCTGGACTTCTCCTCCTG	0.632000													6	25					0	0	1	0	0	
CUX1	1523	broad.mit.edu	37	7	101845106	101845106	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:101845106C>T	uc003uyx.3	+	18	2567	c.2529C>T	c.(2527-2529)GCC>GCT	p.A843A	CUX1_uc003uys.3_Silent_p.A854A|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	843					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						AGGCCAAGGCCGAAGAAACGG	0.677000													14	18					0	0	1	0	0	
CUX1	1523	broad.mit.edu	37	7	101847780	101847780	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:101847780T>C	uc003uyx.3	+	19	3055	c.3017T>C	c.(3016-3018)CTG>CCG	p.L1006P	CUX1_uc003uys.3_Missense_Mutation_p.L1017P|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1006	CUT 2.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						CAGCTCTGGCTGAACGGCGAG	0.652000													17	58					0	0	1	0	0	
HBP1	26959	broad.mit.edu	37	7	106829851	106829851	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:106829851G>C	uc003vdy.2	+	7	1066	c.880G>C	c.(880-882)GTA>CTA	p.V294L	HBP1_uc011klv.1_Missense_Mutation_p.V304L|HBP1_uc003vdz.2_Missense_Mutation_p.V294L|HBP1_uc003vea.2_Missense_Mutation_p.V294L|HBP1_uc003veb.1_Missense_Mutation_p.V294L	NM_012257	NP_036389	O60381	HBP1_HUMAN	HMG-box transcription factor 1	294	AXH.				cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			skin(1)	1						TTTACTTACCGTAGAGTGTAA	0.353000													19	60					0	0	1	0	0	
LRRN3	54674	broad.mit.edu	37	7	110763255	110763255	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:110763255C>T	uc003vft.3	+	4	1473	c.427C>T	c.(427-429)CAA>TAA	p.Q143*	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Nonsense_Mutation_p.Q143*|LRRN3_uc003vfs.3_Nonsense_Mutation_p.Q143*	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	143	LRR 4.|Extracellular (Potential).					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		GAGCAACTTACAAGAACTCTA	0.358000													24	44					0	0	1	0	0	
LRRN3	54674	broad.mit.edu	37	7	110763755	110763755	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:110763755A>G	uc003vft.3	+	4	1973	c.927A>G	c.(925-927)CCA>CCG	p.P309P	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Silent_p.P309P|LRRN3_uc003vfs.3_Silent_p.P309P	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	309	Extracellular (Potential).					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		ATAACCTGCCAGATTTAAGAA	0.398000													24	53					0	0	1	0	0	
TMEM168	64418	broad.mit.edu	37	7	112423866	112423866	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:112423866T>G	uc003vgn.2	-	2	1407	c.1015A>C	c.(1015-1017)AGC>CGC	p.S339R	TMEM168_uc010lju.2_Missense_Mutation_p.S339R|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	339						integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						CTATCAAGGCTATTGTAATCT	0.368000													52	138					0	0	1	0	0	
C7orf60	154743	broad.mit.edu	37	7	112472732	112472732	+	Splice_Site	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:112472732T>C	uc003vgo.1	-	4	601	c.474_splice	c.e4-1	p.E158_splice	C7orf60_uc011kms.1_Splice_Site_p.E184_splice	NM_152556	NP_689769	Q1RMZ1	CG060_HUMAN	hypothetical protein LOC154743											ovary(2)|skin(1)	3						TGTAGCAACCTAAAAACAGAT	0.249000													26	58					0	0	1	0	0	
C7orf58	79974	broad.mit.edu	37	7	120687010	120687010	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:120687010C>A	uc003vjq.3	+	4	950	c.503C>A	c.(502-504)TCC>TAC	p.S168Y	C7orf58_uc003vjr.1_Missense_Mutation_p.S168Y|C7orf58_uc003vjs.3_Missense_Mutation_p.S168Y	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	168						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CCCTGTATATCCAAGGAAGTC	0.388000													36	86					1.96642e-18	2.12008e-18	1	1	0	
AASS	10157	broad.mit.edu	37	7	121738915	121738915	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:121738915C>T	uc003vka.2	-	13	1508	c.1412G>A	c.(1411-1413)CGT>CAT	p.R471H	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Missense_Mutation_p.R471H|AASS_uc011knw.1_Intron	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	471					protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	TGACTGAGCACGTTCCCTATT	0.318000													18	24					0	0	1	0	0	
CADPS2	93664	broad.mit.edu	37	7	122033572	122033572	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:122033572G>A	uc010lkp.2	-	20	2974	c.2811C>T	c.(2809-2811)CGC>CGT	p.R937R	CADPS2_uc011knx.1_Silent_p.R312R|CADPS2_uc003vkg.3_Silent_p.R631R|CADPS2_uc010lkq.2_Silent_p.R931R	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	937	Interaction with DRD2.|MHD1.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						GATCCACATAGCGGACAACCA	0.448000													27	59					0	0	1	0	0	
TAS2R16	50833	broad.mit.edu	37	7	122635118	122635118	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:122635118G>A	uc003vkl.1	-	1	637	c.571C>T	c.(571-573)CTG>TTG	p.L191L		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	191	Helical; Name=5; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						GCCAGGAACAGGATGAAAGGA	0.448000													27	69					0	0	1	0	0	
SND1	27044	broad.mit.edu	37	7	127447555	127447555	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:127447555G>A	uc003vmi.2	+	11	1396	c.1170G>A	c.(1168-1170)CTG>CTA	p.L390L	SND1_uc010lle.2_Silent_p.L43L	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	390	Nuclear localization signal (Potential).|TNase-like 3.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						ACAAGAAACTGCGTCCCCTGT	0.353000													29	63					0	0	1	0	0	
LOC407835	407835	broad.mit.edu	37	7	128766805	128766805	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:128766805C>T	uc003voo.2	+	1	481	c.234C>T	c.(232-234)GAC>GAT	p.D78D		NR_002144				SubName: Full=cDNA FLJ35806 fis, clone TESTI2005987, highly similar to Dual specificity mitogen-activated protein kinase kinase 2 (EC 2.7.12.2); SubName: Full=Mitogen-activated protein kinase kinase 2, isoform CRA_d;												0						CAGAGCTGGACGCGGGCAACG	0.592000													14	38					0	0	1	0	0	
PLXNA4	91584	broad.mit.edu	37	7	131895821	131895821	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:131895821G>T	uc003vra.3	-	10	2408	c.2179C>A	c.(2179-2181)CTC>ATC	p.L727I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	727	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GGCTGGGGGAGGTTCTTGGCC	0.637000													5	13					0.184627	0.184837	1	1	0	
PLXNA4	91584	broad.mit.edu	37	7	131910964	131910964	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:131910964G>A	uc003vra.3	-	8	2167	c.1938C>T	c.(1936-1938)TTC>TTT	p.F646F		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	646	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGGTGCTGGCGAAGGTCATGC	0.547000													33	60					0	0	1	0	0	
EPHB6	2051	broad.mit.edu	37	7	142561853	142561853	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:142561853G>A	uc011kst.1	+	7	1082	c.295G>A	c.(295-297)GGG>AGG	p.G99R	EPHB6_uc011ksu.1_Missense_Mutation_p.G99R|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_5'UTR	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	99	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GGAGCGGCGCGGGGCCCAGAG	0.647000													44	105					0	0	1	0	0	
TRPV5	56302	broad.mit.edu	37	7	142622792	142622792	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:142622792G>C	uc003wby.1	-	8	1218	c.954C>G	c.(952-954)AGC>AGG	p.S318R	TRPV5_uc003wbz.2_Missense_Mutation_p.S318R	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	318	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TCCACTTGAAGCTCACCAGCT	0.532000													14	20					0	0	1	0	0	
EPHA1	2041	broad.mit.edu	37	7	143092032	143092032	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:143092032T>G	uc003wcz.2	-	14	2308	c.2221A>C	c.(2221-2223)AGT>CGT	p.S741R		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	741	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				TTGTGATTACTGAGGTAGTTC	0.567000													25	39					0	0	1	0	0	
ARHGEF5	7984	broad.mit.edu	37	7	144075928	144075928	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:144075928C>T	uc003wel.2	+	14	4723	c.4605C>T	c.(4603-4605)GAC>GAT	p.D1535D	ARHGEF5_uc003wem.2_Silent_p.D336D	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	1535	SH3.				intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					AGAAAGCCGACGTGGTGATGG	0.557000													40	103					0	0	1	0	0	
ZNF786	136051	broad.mit.edu	37	7	148768359	148768359	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:148768359C>T	uc003wfh.2	-	4	1642	c.1505G>A	c.(1504-1506)CGG>CAG	p.R502Q	ZNF786_uc011kuk.1_Missense_Mutation_p.R465Q|ZNF786_uc003wfi.2_Missense_Mutation_p.R416Q	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	502	C2H2-type 7; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CCCACCGTGCCGGAGCCGGTG	0.662000													17	34					0	0	1	0	0	
SSPO	23145	broad.mit.edu	37	7	149521182	149521182	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:149521182C>T	uc010lpk.2	+	95	13522	c.13522C>T	c.(13522-13524)CGG>TGG	p.R4508W	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4508					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CAGTGAATGCCGGCGTGGGGA	0.502000													3	9					0	0	1	0	0	
SSPO	23145	broad.mit.edu	37	7	149522390	149522390	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:149522390G>A	uc010lpk.2	+	101	14017	c.14017G>A	c.(14017-14019)GTA>ATA	p.V4673I	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_RNA|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_RNA	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4673	TIL 6.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCAAGACACTGTATTCACCCT	0.632000													33	45					0	0	1	0	0	
GIMAP8	155038	broad.mit.edu	37	7	150171329	150171329	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:150171329G>A	uc003whj.2	+	4	1242	c.912G>A	c.(910-912)CCG>CCA	p.P304P		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	304						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TTGATGCTCCGGACATCTCAT	0.458000													6	94					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151845154	151845154	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:151845154G>C	uc003wla.2	-	52	14077	c.13858C>G	c.(13858-13860)CAT>GAT	p.H4620D	MLL3_uc003wkz.2_Missense_Mutation_p.H3738D|MLL3_uc003wkx.2_Missense_Mutation_p.H778D|MLL3_uc003wky.2_Missense_Mutation_p.H2184D	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4620	FYR C-terminal.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGGTCTTCATGGCCTTGTTCC	0.507000			N		medulloblastoma								18	40					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151859695	151859695	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:151859695G>A	uc003wla.2	-	43	11186	c.10967C>T	c.(10966-10968)GCC>GTC	p.A3656V	MLL3_uc003wkz.2_Missense_Mutation_p.A2717V|MLL3_uc003wky.2_Missense_Mutation_p.A1165V	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3656					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CTCTTGGTCGGCTTGTTGAGG	0.517000			N		medulloblastoma								49	93					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151970816	151970816	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:151970816T>C	uc003wla.2	-	7	1205	c.986A>G	c.(985-987)GAA>GGA	p.E329G		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	329					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GTCAATGTGTTCTGGACAAAG	0.388000			N		medulloblastoma								9	230					0	0	1	0	0	
PTPRN2	5799	broad.mit.edu	37	7	157926632	157926632	+	Silent	SNP	A	G	G	rs148933237		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:157926632A>G	uc003wno.2	-	9	1414	c.1293T>C	c.(1291-1293)CCT>CCC	p.P431P	PTPRN2_uc003wnp.2_Silent_p.P414P|PTPRN2_uc003wnq.2_Silent_p.P431P|PTPRN2_uc003wnr.2_Silent_p.P393P|PTPRN2_uc011kwa.1_Silent_p.P454P	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	431	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGGAAGACTCAGGGTGCTCGG	0.607000													29	57					0	0	1	0	0	
DLGAP2	9228	broad.mit.edu	37	8	1514042	1514042	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:1514042C>T	uc003wpl.2	+	3	1281	c.1184C>T	c.(1183-1185)CCG>CTG	p.P395L	DLGAP2_uc003wpm.2_Missense_Mutation_p.P395L	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	474					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GGACAGAGACCGCTTGGAGAG	0.587000													4	9					0	0	1	0	0	
PPP1R3B	79660	broad.mit.edu	37	8	8998667	8998667	+	Silent	SNP	C	T	T	rs138887555		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:8998667C>T	uc003wsn.3	-	2	660	c.495G>A	c.(493-495)ACG>ACA	p.T165T	PPP1R3B_uc003wso.3_Silent_p.T164T	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	165	CBM21.				glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		AGGTGTCGAACGTCATCCTTA	0.502000													42	66					0	0	1	0	0	
PRSS55	203074	broad.mit.edu	37	8	10387198	10387198	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:10387198C>T	uc003wta.2	+	2	351	c.336C>T	c.(334-336)TCC>TCT	p.S112S	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	112	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						GCTTATATTCCGAGGAGCTGT	0.592000													56	115					0	0	1	0	0	
RP1L1	94137	broad.mit.edu	37	8	10467297	10467297	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:10467297G>T	uc003wtc.2	-	4	4540	c.4311C>A	c.(4309-4311)GCC>GCA	p.A1437A		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1437					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCTCTGCAGAGGCAGAGGCTC	0.637000													83	175					8.87156e-34	9.65917e-34	1	1	0	
RP1L1	94137	broad.mit.edu	37	8	10469919	10469919	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:10469919G>T	uc003wtc.2	-	4	1918	c.1689C>A	c.(1687-1689)ACC>ACA	p.T563T		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	563					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCTGCTGAGAGGTCTCGGCCC	0.647000													32	62					2.08457e-15	2.22707e-15	1	1	0	
XKR6	286046	broad.mit.edu	37	8	11058827	11058827	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:11058827C>T	uc003wtk.1	-	1	49	c.22G>A	c.(22-24)GGT>AGT	p.G8S		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	8	Gly-rich.					integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		CCCACGCCACCGCCATCGGAT	0.453000													3	4					0	0	1	0	0	
BLK	640	broad.mit.edu	37	8	11418890	11418890	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:11418890A>G	uc003wty.2	+	11	1690	c.1109A>G	c.(1108-1110)GAG>GGG	p.E370G	BLK_uc003wtz.2_Missense_Mutation_p.E299G|BLK_uc003wua.2_Missense_Mutation_p.E206G	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	370	Protein kinase.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		CTGGTGTCTGAGGCCTTGTGC	0.537000													3	6					0	0	1	0	0	
FAM86B2	653333	broad.mit.edu	37	8	12285239	12285239	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:12285239C>T	uc003wvt.3	-	7	819	c.819G>A	c.(817-819)AAG>AAA	p.K273K	FAM66D_uc011kxp.1_Intron|uc003wvm.1_Intron|uc003wvp.1_5'Flank|FAM86B2_uc003wvq.3_RNA|FAM86B2_uc003wvr.3_Silent_p.K96K|FAM86B2_uc003wvs.3_Silent_p.K173K|FAM86B2_uc010lsn.2_RNA|FAM86B2_uc003wvu.3_Silent_p.K82K|FAM86B2_uc010lso.2_RNA|FAM86B2_uc011kxt.1_Silent_p.K45K|FAM86B2_uc011kxu.1_RNA|FAM86B2_uc010lsl.2_RNA	NM_001137610	NP_001131082	P0C5J1	F86B2_HUMAN	hypothetical protein LOC653333	273											0						CAGGAGCCCGCTTGTGCTCCC	0.622000													6	25					0	0	1	0	0	
CSGALNACT1	55790	broad.mit.edu	37	8	19363191	19363191	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:19363191G>A	uc011kyn.1	-	4	1219	c.155C>T	c.(154-156)ACG>ATG	p.T52M	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.T52M|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.T51M|CSGALNACT1_uc003wzh.2_RNA	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	52	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		CTCCTTCCCCGTGGGGCTGTT	0.627000													13	60					0	0	1	0	0	
LZTS1	11178	broad.mit.edu	37	8	20110994	20110994	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:20110994G>A	uc003wzr.2	-	2	559	c.448C>T	c.(448-450)CAC>TAC	p.H150Y	LZTS1_uc010ltg.1_Missense_Mutation_p.H150Y	NM_021020	NP_066300	Q9Y250	LZTS1_HUMAN	leucine zipper, putative tumor suppressor 1	150					cell cycle|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	cell junction|dendritic spine|Golgi apparatus|nucleolus|nucleoplasm|postsynaptic density|postsynaptic membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				Colorectal(74;0.0511)|COAD - Colon adenocarcinoma(73;0.207)		GGGGCGGGGTGCAGCTGGTGG	0.672000													7	15					0	0	1	0	0	
EGR3	1960	broad.mit.edu	37	8	22548122	22548122	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:22548122G>A	uc003xcm.1	-	2	1386	c.1028C>T	c.(1027-1029)GCG>GTG	p.A343V	EGR3_uc011kzn.1_Missense_Mutation_p.A305V|EGR3_uc011kzo.1_Missense_Mutation_p.A289V	NM_004430	NP_004421	Q06889	EGR3_HUMAN	early growth response 3	343	C2H2-type 3.				circadian rhythm|muscle organ development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)		Colorectal(74;0.0145)|BRCA - Breast invasive adenocarcinoma(99;0.053)|COAD - Colon adenocarcinoma(73;0.0608)		GTCGCTGCGCGCAAACTTGCG	0.647000													26	25					0	0	1	0	0	
ESCO2	157570	broad.mit.edu	37	8	27649496	27649496	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:27649496G>A	uc003xgg.2	+	8	1363	c.1280G>A	c.(1279-1281)CGT>CAT	p.R427H	ESCO2_uc010luy.1_RNA	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	427					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		AAGAAAGAACGTGTAGTAGCA	0.368000									SC_Phocomelia_syndrome				29	22					0	0	1	0	0	
KCNU1	157855	broad.mit.edu	37	8	36675180	36675180	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:36675180C>T	uc010lvw.2	+	10	1095	c.1008C>T	c.(1006-1008)GTC>GTT	p.V336V	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	336	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TTATTGTGGTCTGTGGAAACA	0.453000													36	69					0	0	1	0	0	
LOC728024	728024	broad.mit.edu	37	8	37605370	37605370	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:37605370C>A	uc010lvx.1	-	1	152	c.6G>T	c.(4-6)AGG>AGT	p.R2S	ERLIN2_uc003xke.3_Intron	NR_003671				SubName: Full=cDNA FLJ38978 fis, clone NT2RI2004209; SubName: Full=Chromosome X open reading frame 56, isoform CRA_b; SubName: Full=Putative uncharacterized protein CXorf56;												0						GGTCCCGGGGCCTCATGGGCA	0.527000													19	97					2.94398e-08	3.06188e-08	1	1	0	
ANK1	286	broad.mit.edu	37	8	41530137	41530137	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:41530137G>A	uc003xok.2	-	38	4915	c.4831C>T	c.(4831-4833)CGG>TGG	p.R1611W	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.R1611W|ANK1_uc003xoj.2_Missense_Mutation_p.R1611W|ANK1_uc003xol.2_Intron|ANK1_uc003xom.2_Missense_Mutation_p.R1652W	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1611	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TCGGGGCCCCGCGGTTCCTCT	0.567000													89	106					0	0	1	0	0	
ANK1	286	broad.mit.edu	37	8	41552810	41552810	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:41552810G>A	uc003xok.2	-	27	3084	c.3000C>T	c.(2998-3000)GGC>GGT	p.G1000G	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.G316G|ANK1_uc003xoi.2_Silent_p.G1000G|ANK1_uc003xoj.2_Silent_p.G1000G|ANK1_uc003xol.2_Silent_p.G1000G|ANK1_uc003xom.2_Silent_p.G1041G	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1000	ZU5.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GGTCTCCACGGCCATGGGAGG	0.607000													37	90					0	0	1	0	0	
MYST3	7994	broad.mit.edu	37	8	41834758	41834758	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:41834758T>C	uc010lxb.2	-	8	1675	c.1131A>G	c.(1129-1131)TCA>TCG	p.S377S	MYST3_uc010lxc.2_Silent_p.S377S|MYST3_uc003xon.3_Silent_p.S377S|MYST3_uc010lxd.2_Silent_p.S377S	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	377	Poly-Ser.|Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CTTCTGATGATGATGATGCTG	0.423000													31	101					0	0	1	0	0	
VDAC3	7419	broad.mit.edu	37	8	42252613	42252613	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:42252613G>A	uc011lct.1	+	4	222	c.79G>A	c.(79-81)GTC>ATC	p.V27I	VDAC3_uc010lxk.2_Missense_Mutation_p.V27I|VDAC3_uc003xpc.2_Missense_Mutation_p.V27I	NM_005662	NP_005653	Q9Y277	VDAC3_HUMAN	voltage-dependent anion channel 3 isoform b	27	Beta stranded; (By similarity).				adenine transport	mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			upper_aerodigestive_tract(1)	1	all_cancers(6;3.86e-23)|all_lung(13;6.47e-12)|Lung NSC(13;1.08e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;3.48e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00266)|Lung(22;0.00849)|LUSC - Lung squamous cell carcinoma(45;0.024)		Dihydroxyaluminium(DB01375)	CTTTGGCATGGTCAAGATAGA	0.313000													19	73					0	0	1	0	0	
RP1	6101	broad.mit.edu	37	8	55542473	55542473	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:55542473A>G	uc003xsd.1	+	4	6179	c.6031A>G	c.(6031-6033)AAC>GAC	p.N2011D	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2011					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAAAAGAATTAACTTCTTGGG	0.294000													30	57					0	0	1	0	0	
IMPAD1	54928	broad.mit.edu	37	8	57876593	57876593	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:57876593G>A	uc003xte.3	-	5	1122	c.839C>T	c.(838-840)CCT>CTT	p.P280L		NM_017813	NP_060283	Q9NX62	IMPA3_HUMAN	inositol monophosphatase domain containing 1	280						Golgi apparatus|integral to membrane	inositol-1(or 4)-monophosphatase activity|metal ion binding			ovary(1)	1		all_cancers(86;0.175)|all_lung(136;0.0321)|Lung NSC(129;0.0417)|all_epithelial(80;0.0448)				ACTCTTATCAGGCACATCCAA	0.313000													4	11					0	0	1	0	0	
ASPH	444	broad.mit.edu	37	8	62555985	62555985	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:62555985A>G	uc003xuj.2	-	9	986	c.717T>C	c.(715-717)AGT>AGC	p.S239S	ASPH_uc011leg.1_Silent_p.S210S|ASPH_uc003xuo.2_Silent_p.S220S|ASPH_uc011leh.1_Silent_p.S206S|ASPH_uc003xul.2_Silent_p.S225S|ASPH_uc011lei.1_Silent_p.S225S|ASPH_uc011lej.1_Silent_p.S182S|ASPH_uc003xun.2_Silent_p.S196S|ASPH_uc011lek.1_Silent_p.S220S|ASPH_uc003xum.2_Silent_p.S239S	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	239	Glu-rich.|Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	CTACTGGTTCACTGGAATCTA	0.249000													19	64					0	0	1	0	0	
NCOA2	10499	broad.mit.edu	37	8	71041004	71041004	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:71041004G>A	uc003xyn.1	-	17	3698	c.3536C>T	c.(3535-3537)ACG>ATG	p.T1179M	NCOA2_uc011lfb.1_Missense_Mutation_p.T267M	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1179					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			CACTAGGCCCGTGGGCCTGAG	0.557000			T	RUNXBP2	AML								18	37					0	0	1	0	0	
HNF4G	3174	broad.mit.edu	37	8	76459914	76459914	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:76459914A>G	uc003yaq.2	+	4	509	c.239A>G	c.(238-240)GAA>GGA	p.E80G	HNF4G_uc003yap.1_Missense_Mutation_p.E80G|HNF4G_uc003yar.2_Missense_Mutation_p.E117G	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	80	Nuclear receptor.				endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			ATGAAAAAAGAAGGTAATAAT	0.299000													32	72					0	0	1	0	0	
ZFHX4	79776	broad.mit.edu	37	8	77763350	77763350	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:77763350G>T	uc003yav.2	+	10	4445	c.4058G>T	c.(4057-4059)CGC>CTC	p.R1353L	ZFHX4_uc003yau.1_Missense_Mutation_p.R1398L|ZFHX4_uc003yaw.1_Missense_Mutation_p.R1353L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1353	C2H2-type 10.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TACAAGTATCGCTGTAACCAT	0.438000										HNSCC(33;0.089)			16	30					2.31682e-05	2.3623e-05	1	1	0	
FAM82B	51115	broad.mit.edu	37	8	87498764	87498764	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:87498764C>T	uc003ydu.2	-	4	604	c.444G>A	c.(442-444)GAG>GAA	p.E148E	FAM82B_uc011lfz.1_Silent_p.E148E|FAM82B_uc011lga.1_Silent_p.E148E	NM_016033	NP_057117	Q96DB5	RMD1_HUMAN	regulator of microtubule dynamics 1	148						microtubule|spindle pole	binding			ovary(1)	1						TTTTTGCATACTCTAGGGCTT	0.413000													11	45					0	0	1	0	0	
OSGIN2	734	broad.mit.edu	37	8	90937493	90937493	+	Silent	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:90937493T>C	uc003yeg.2	+	6	1597	c.1251T>C	c.(1249-1251)CCT>CCC	p.P417P	OSGIN2_uc003yeh.2_Silent_p.P461P	NM_004337	NP_004328	Q9Y236	OSGI2_HUMAN	oxidative stress induced growth inhibitor family	417					germ cell development|meiosis						0			BRCA - Breast invasive adenocarcinoma(11;0.0344)			GTTCTCATCCTAATCTGTCTT	0.393000													53	94					0	0	1	0	0	
RUNX1T1	862	broad.mit.edu	37	8	92988171	92988171	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:92988171G>A	uc003yfd.2	-	9	1394	c.1310C>T	c.(1309-1311)GCG>GTG	p.A437V	RUNX1T1_uc003yfc.1_Missense_Mutation_p.A410V|RUNX1T1_uc003yfe.1_Missense_Mutation_p.A400V|RUNX1T1_uc010mao.2_Missense_Mutation_p.A410V|RUNX1T1_uc011lgi.1_Missense_Mutation_p.A448V|RUNX1T1_uc010man.1_Missense_Mutation_p.A62V|RUNX1T1_uc003yfb.1_Missense_Mutation_p.A400V	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	437					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GTATCCAGACGCAGGCCTGTG	0.488000													42	89					0	0	1	0	0	
POP1	10940	broad.mit.edu	37	8	99168334	99168334	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:99168334G>A	uc003yij.3	+	15	2214	c.2114G>A	c.(2113-2115)TGC>TAC	p.C705Y	POP1_uc011lgv.1_Missense_Mutation_p.C705Y|POP1_uc003yik.2_Missense_Mutation_p.C705Y	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	705					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			GCACCTTTCTGCTGTCCCTGG	0.473000													27	82					0	0	1	0	0	
KCNS2	3788	broad.mit.edu	37	8	99440690	99440690	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:99440690C>T	uc003yin.2	+	2	833	c.483C>T	c.(481-483)TTC>TTT	p.F161F		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	161	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			CCTCCAAGTTCGATGGGCAGC	0.607000													11	36					0	0	1	0	0	
KLF10	7071	broad.mit.edu	37	8	103663847	103663847	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:103663847G>A	uc011lhk.1	-	3	867	c.713C>T	c.(712-714)ACG>ATG	p.T238M	KLF10_uc011lhj.1_Missense_Mutation_p.T227M	NM_005655	NP_005646	Q13118	KLF10_HUMAN	Kruppel-like factor 10 isoform a	238					cell proliferation|cell-cell signaling|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|skeletal system development|transforming growth factor beta receptor signaling pathway	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_epithelial(15;5.63e-07)|Lung NSC(17;8.18e-05)|all_lung(17;0.000169)		OV - Ovarian serous cystadenocarcinoma(57;0.000112)|STAD - Stomach adenocarcinoma(118;0.0826)			GCAGATGACCGTCTCTGAGGA	0.522000											OREG0018913	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	39					0	0	1	0	0	
RIMS2	9699	broad.mit.edu	37	8	104897650	104897650	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:104897650G>C	uc003yls.2	+	2	398	c.157G>C	c.(157-159)GAT>CAT	p.D53H	RIMS2_uc003ylp.2_Missense_Mutation_p.D275H|RIMS2_uc003ylw.2_Missense_Mutation_p.D83H|RIMS2_uc003ylq.2_Missense_Mutation_p.D83H|RIMS2_uc003ylr.2_Missense_Mutation_p.D83H	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	306					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AGATTATGCTGATAGGCGATC	0.393000										HNSCC(12;0.0054)			32	51					0	0	1	0	0	
RIMS2	9699	broad.mit.edu	37	8	105001556	105001556	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:105001556G>A	uc003yls.2	+	15	2526	c.2285G>A	c.(2284-2286)CGA>CAA	p.R762Q	RIMS2_uc003ylp.2_Missense_Mutation_p.R984Q|RIMS2_uc003ylw.2_Missense_Mutation_p.R776Q|RIMS2_uc003ylq.2_Missense_Mutation_p.R776Q|RIMS2_uc003ylr.2_Missense_Mutation_p.R823Q	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1046					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CAGGGGCTTCGAGGGACCCGC	0.393000										HNSCC(12;0.0054)			21	75					0	0	1	0	0	
ATAD2	29028	broad.mit.edu	37	8	124346559	124346559	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:124346559C>T	uc003yqh.3	-	23	3323	c.3215G>A	c.(3214-3216)CGT>CAT	p.R1072H	ATAD2_uc011lii.1_Missense_Mutation_p.R863H|ATAD2_uc003yqi.3_RNA	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	1072					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CCTAATAAGACGATCTATGAA	0.328000													6	25					0	0	1	0	0	
EFR3A	23167	broad.mit.edu	37	8	132968153	132968153	+	Splice_Site	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:132968153G>A	uc003yte.2	+	7	977	c.776_splice	c.e7+1	p.A259_splice		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A							plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			CAGTTTTTGCGTAAGTAGTTG	0.373000													12	34					0	0	1	0	0	
TG	7038	broad.mit.edu	37	8	133900585	133900585	+	Missense_Mutation	SNP	G	A	A	rs115070736	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:133900585G>A	uc003ytw.2	+	10	2574	c.2533G>A	c.(2533-2535)GTC>ATC	p.V845I		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	845	Thyroglobulin type-1 7.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TCTGCAAGATGTCCCACTAGC	0.527000													17	50					0	0	1	0	0	
TG	7038	broad.mit.edu	37	8	133923712	133923712	+	Missense_Mutation	SNP	A	G	G	rs142264604		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:133923712A>G	uc003ytw.2	+	19	4134	c.4093A>G	c.(4093-4095)AAT>GAT	p.N1365D	TG_uc010mdw.2_Missense_Mutation_p.N124D	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1365					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TTTAGGAGTGAATGTTACATG	0.443000													32	72					0	0	1	0	0	
FAM135B	51059	broad.mit.edu	37	8	139164495	139164495	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:139164495G>A	uc003yuy.2	-	13	2394	c.2223C>T	c.(2221-2223)AGC>AGT	p.S741S	FAM135B_uc003yux.2_Silent_p.S642S|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.S303S|FAM135B_uc003yvb.2_Silent_p.S303S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	741										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CCTGGATGCCGCTTGGCAAAC	0.527000										HNSCC(54;0.14)			11	28					0	0	1	0	0	
KCNK9	51305	broad.mit.edu	37	8	140630920	140630920	+	Missense_Mutation	SNP	C	T	T	rs121908332		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:140630920C>T	uc003yvf.1	-	2	770	c.706G>A	c.(706-708)GGG>AGG	p.G236R	KCNK9_uc003yvg.1_Missense_Mutation_p.G236R|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	236	Helical; (Potential).		G -> R (in BIBAS; inactive).			integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			AGGAAGGCCCCGATGACCGTC	0.597000													17	34					0	0	1	0	0	
DENND3	22898	broad.mit.edu	37	8	142176321	142176321	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:142176321C>T	uc003yvy.2	+	12	1624	c.1346C>T	c.(1345-1347)CCG>CTG	p.P449L	DENND3_uc010mep.2_Missense_Mutation_p.P410L|DENND3_uc003yvz.1_Missense_Mutation_p.P133L	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	449										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CCAAGGAGACCGACCGTTGAG	0.483000													42	111					0	0	1	0	0	
DENND3	22898	broad.mit.edu	37	8	142176445	142176445	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:142176445G>A	uc003yvy.2	+	12	1748	c.1470G>A	c.(1468-1470)TCG>TCA	p.S490S	DENND3_uc010mep.2_Silent_p.S451S|DENND3_uc003yvz.1_Silent_p.S174S	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	490										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GGAACTCCTCGCTCCGGCTGA	0.657000													18	51					0	0	1	0	0	
CYP11B1	1584	broad.mit.edu	37	8	143956560	143956560	+	Missense_Mutation	SNP	C	T	T	rs4998896		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:143956560C>T	uc003yxi.2	-	8	1218	c.1211G>A	c.(1210-1212)CGC>CAC	p.R404H	CYP11B1_uc010mex.2_Missense_Mutation_p.R103H|CYP11B1_uc003yxh.2_Intron|CYP11B1_uc003yxj.2_Intron|CYP11B1_uc010mey.2_Missense_Mutation_p.R475H	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	404					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GAGGAACACGCGCACCAATGT	0.647000									Familial_Hyperaldosteronism_type_I				11	27					0	0	1	0	0	
PLEC	5339	broad.mit.edu	37	8	144998376	144998376	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:144998376C>A	uc003zaf.1	-	31	6302	c.6132G>T	c.(6130-6132)GAG>GAT	p.E2044D	PLEC_uc003zab.1_Missense_Mutation_p.E1907D|PLEC_uc003zac.1_Missense_Mutation_p.E1911D|PLEC_uc003zad.2_Missense_Mutation_p.E1907D|PLEC_uc003zae.1_Missense_Mutation_p.E1875D|PLEC_uc003zag.1_Missense_Mutation_p.E1885D|PLEC_uc003zah.2_Missense_Mutation_p.E1893D|PLEC_uc003zaj.2_Missense_Mutation_p.E1934D	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2044	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCTTCTGCCGCTCCAGCTCGC	0.701000													6	24					8.12818e-05	8.26389e-05	1	1	0	
BOP1	23246	broad.mit.edu	37	8	145512946	145512946	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:145512946C>T	uc003zbr.1	-	2	207	c.139G>A	c.(139-141)GGC>AGC	p.G47S	HSF1_uc003zbt.3_5'Flank|HSF1_uc003zbu.3_5'Flank	NM_015201	NP_056016	Q14137	BOP1_HUMAN	block of proliferation 1	47					cell proliferation|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	nucleoplasm|PeBoW complex	protein binding				0	all_cancers(97;4.06e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;2.61e-39)|all cancers(56;1.37e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.087)			GAATCGCTGCCGGTGCTGTGG	0.612000													10	30					0	0	1	0	0	
ADCK5	203054	broad.mit.edu	37	8	145617837	145617837	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:145617837G>A	uc003zch.2	+	13	1499	c.1445G>A	c.(1444-1446)CGC>CAC	p.R482H	ADCK5_uc003zcg.2_RNA|ADCK5_uc003zci.2_Missense_Mutation_p.R71H	NM_174922	NP_777582	Q3MIX3	ADCK5_HUMAN	aarF domain containing kinase 5	482						integral to membrane	protein serine/threonine kinase activity			stomach(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;8.96e-41)|Epithelial(56;4.08e-40)|all cancers(56;4.51e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			CTGGTGCTGCGCAACATCAAC	0.687000													5	6					0	0	1	0	0	
CBWD1	55871	broad.mit.edu	37	9	164038	164038	+	Splice_Site	SNP	C	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:164038C>G	uc003zga.3	-	5	537	c.431_splice	c.e5-1	p.G144_splice	CBWD1_uc010mgs.2_Splice_Site|CBWD1_uc003zgb.3_Splice_Site_p.G108_splice|CBWD1_uc003zgc.3_Splice_Site_p.G144_splice|CBWD1_uc011llr.1_Splice_Site_p.G108_splice	NM_018491	NP_060961	Q9BRT8	CBWD1_HUMAN	COBW domain containing 1 isoform 1								ATP binding|protein binding			ovary(1)	1	all_lung(41;0.218)	all_cancers(5;3.04e-16)|all_epithelial(5;4.68e-12)|all_lung(10;1.94e-10)|Lung NSC(10;3.61e-10)|Acute lymphoblastic leukemia(5;0.00439)|Breast(48;0.0148)|all_hematologic(5;0.024)|Prostate(43;0.122)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GCCACTGCACCTGAAAATATA	0.269000													17	143					0	0	1	0	0	
CNTLN	54875	broad.mit.edu	37	9	17464503	17464503	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:17464503G>A	uc003zmz.2	+	21	3436	c.3410G>A	c.(3409-3411)CGA>CAA	p.R1137Q	CNTLN_uc003zmy.2_Missense_Mutation_p.R1138Q|CNTLN_uc010mio.2_Missense_Mutation_p.R817Q	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	1138	Potential.					centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		AGGATATCTCGAATGGAGAGG	0.303000													41	112					0	0	1	0	0	
ADAMTSL1	92949	broad.mit.edu	37	9	18777073	18777073	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:18777073C>T	uc003zne.3	+	19	2973	c.2846C>T	c.(2845-2847)GCG>GTG	p.A949V		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	949	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		ACCTGCTCAGCGGGCCCGGCC	0.642000													20	43					0	0	1	0	0	
ACER2	340485	broad.mit.edu	37	9	19423933	19423933	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:19423933A>G	uc003zny.1	+	2	340	c.182A>G	c.(181-183)AAC>AGC	p.N61S	ACER2_uc003znx.1_RNA|ACER2_uc003znz.1_Missense_Mutation_p.N12S	NM_001010887	NP_001010887	Q5QJU3	ACER2_HUMAN	alkaline ceramidase 2	61	Cytoplasmic (Potential).				ceramide metabolic process|negative regulation of cell adhesion mediated by integrin|negative regulation of cell-matrix adhesion|negative regulation of protein glycosylation in Golgi|positive regulation of cell proliferation|response to retinoic acid|sphingosine biosynthetic process	integral to Golgi membrane	ceramidase activity			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2						ACATGCTTCAACAGTGGCATC	0.428000													35	95					0	0	1	0	0	
MLLT3	4300	broad.mit.edu	37	9	20414337	20414337	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:20414337G>A	uc003zoe.2	-	5	766	c.507C>T	c.(505-507)AGC>AGT	p.S169S	MLLT3_uc011lne.1_Silent_p.S137S|MLLT3_uc011lnf.1_Silent_p.S166S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.A131V	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	169	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctgctgctactgc	0.149000			T	MLL	ALL								17	45					0	0	1	0	0	
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:20414379G>A	uc003zoe.2	-	5	724	c.465C>T	c.(463-465)AGC>AGT	p.S155S	MLLT3_uc011lne.1_Silent_p.S123S|MLLT3_uc011lnf.1_Silent_p.S152S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Silent_p.S123S	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	155	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.149000			T	MLL	ALL								8	34					0	0	1	0	0	
KIAA1797	54914	broad.mit.edu	37	9	20866997	20866997	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:20866997C>T	uc003zog.1	+	20	2539	c.2176C>T	c.(2176-2178)CAT>TAT	p.H726Y	KIAA1797_uc003zoh.1_Missense_Mutation_p.H162Y	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	726						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CACCATTCTTCATCTGCCTGA	0.373000													6	91					0	0	1	0	0	
KIAA1797	54914	broad.mit.edu	37	9	20986390	20986390	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:20986390G>A	uc003zog.1	+	42	5195	c.4832G>A	c.(4831-4833)CGT>CAT	p.R1611H	KIAA1797_uc003zoh.1_Missense_Mutation_p.R1047H	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1611						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		GTGCAGCACCGTGAGAAAGAG	0.507000													17	35					0	0	1	0	0	
IFNA6	3443	broad.mit.edu	37	9	21350366	21350366	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:21350366G>A	uc011lni.1	-	1	521	c.521C>T	c.(520-522)TCC>TTC	p.S174F		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	174					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TGAAGAGAAGGATCTCATGAT	0.448000													101	221					0	0	1	0	0	
IFNA6	3443	broad.mit.edu	37	9	21350769	21350769	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:21350769G>T	uc011lni.1	-	1	118	c.118C>A	c.(118-120)CTC>ATC	p.L40I		NM_021002	NP_066282	P05013	IFNA6_HUMAN	interferon, alpha 6 precursor	40					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TGTGCCAGGAGCATCATGGTC	0.522000													44	75					1.22674e-20	1.32503e-20	1	1	0	
MIR31	407035	broad.mit.edu	37	9	21512164	21512164	+	RNA	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:21512164C>T	hsa-mir-31|MI0000089	-			c.21C>T			LOC554202_uc003zpe.2_Intron|LOC554202_uc003zpf.2_Intron|uc011lnj.1_RNA																	0						AACAGCTATGCCAGCATCTTG	0.468000													29	42					0	0	1	0	0	
ELAVL2	1993	broad.mit.edu	37	9	23705056	23705056	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:23705056C>T	uc003zpu.2	-	4	622	c.347G>A	c.(346-348)CGC>CAC	p.R116H	ELAVL2_uc003zps.2_Missense_Mutation_p.R116H|ELAVL2_uc003zpt.2_Missense_Mutation_p.R116H|ELAVL2_uc003zpv.2_Missense_Mutation_p.R116H|ELAVL2_uc003zpw.2_Missense_Mutation_p.R116H	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	116	RRM 1.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TGAACTTGGGCGAGCATAGGA	0.398000													29	54					0	0	1	0	0	
DNAJB5	25822	broad.mit.edu	37	9	34996396	34996396	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:34996396C>T	uc003zvt.2	+	3	484	c.346C>T	c.(346-348)CGC>TGC	p.R116C	DNAJB5_uc003zvs.2_Missense_Mutation_p.R150C|DNAJB5_uc011los.1_Missense_Mutation_p.R188C	NM_012266	NP_036398	O75953	DNJB5_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 5	116					protein folding|response to unfolded protein		heat shock protein binding|unfolded protein binding				0			LUSC - Lung squamous cell carcinoma(32;0.00575)			TGCCAGCAGCCGCTCCACTCG	0.552000													18	54					0	0	1	0	0	
UNC13B	10497	broad.mit.edu	37	9	35403977	35403977	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:35403977C>T	uc003zwq.2	+	39	5015	c.4723C>T	c.(4723-4725)CGA>TGA	p.R1575*	UNC13B_uc003zwr.2_Nonsense_Mutation_p.R1594*|ATP8B5P_uc010mkn.1_5'Flank|ATP8B5P_uc010mko.2_5'Flank|ATP8B5P_uc010mkp.2_5'Flank|ATP8B5P_uc003zwu.2_5'Flank	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	1575					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			CGAGGTGGCCCGAGAATTTGT	0.532000													16	31					0	0	1	0	0	
TLN1	7094	broad.mit.edu	37	9	35708384	35708384	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:35708384T>C	uc003zxt.2	-	34	4778	c.4424A>G	c.(4423-4425)CAG>CGG	p.Q1475R		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1475	Interaction with SYNM.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GCAGGCCATCTGAATTGCCTG	0.592000													21	42					0	0	1	0	0	
FAM75A6	389730	broad.mit.edu	37	9	43627776	43627776	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:43627776C>T	uc011lrb.1	-	4	940	c.911G>A	c.(910-912)CGC>CAC	p.R304H		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	304						integral to membrane					0						TGGTGGGTGGCGGGAAAGAGG	0.547000													118	237					0	0	1	0	0	
PGM5P2	595135	broad.mit.edu	37	9	69117748	69117748	+	RNA	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:69117748G>A	uc004aff.3	-	4		c.855C>T				NR_002836				Homo sapiens phosphoglucomutase 5 pseudogene 2, mRNA (cDNA clone IMAGE:4121651), with apparent retained intron.												0						TTGCATCAACGCGAATCTTCA	0.458000													25	53					0	0	1	0	0	
PGM5	5239	broad.mit.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:70993145A>G	uc004agr.2	+	2	521	c.292A>G	c.(292-294)ATC>GTC	p.I98V		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	98					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						ACAGAATGGCATCTTGTCGAC	0.478000													9	74					0	0	1	0	0	
PIP5K1B	8395	broad.mit.edu	37	9	71606165	71606165	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:71606165G>A	uc004agu.2	+	15	1917	c.1612G>A	c.(1612-1614)GTC>ATC	p.V538I	PIP5K1B_uc011lrq.1_Intron|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	538						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		TGTGCTTGACGTCTATTTAGT	0.438000													5	30					0	0	1	0	0	
TMEM2	23670	broad.mit.edu	37	9	74312964	74312964	+	Silent	SNP	C	T	T	rs142314012	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:74312964C>T	uc011lsa.1	-	20	4074	c.3534G>A	c.(3532-3534)CCG>CCA	p.P1178P	TMEM2_uc011lrz.1_Silent_p.P171P|TMEM2_uc010mos.2_Silent_p.P1115P|TMEM2_uc011lsb.1_RNA|TMEM2_uc004aik.2_Silent_p.P12P	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	1178						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TGACCACTGACGGCTTTCTGT	0.522000													22	49					0	0	1	0	0	
TRPM6	140803	broad.mit.edu	37	9	77415270	77415270	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:77415270G>A	uc004ajl.1	-	17	2376	c.2138C>T	c.(2137-2139)TCG>TTG	p.S713L	TRPM6_uc004ajk.1_Missense_Mutation_p.S708L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Missense_Mutation_p.S91L	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	713	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TAATCCTCCCGACACGGCCAG	0.483000													31	61					0	0	1	0	0	
KIF27	55582	broad.mit.edu	37	9	86495258	86495258	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:86495258C>T	uc004ana.2	-	11	2741	c.2597G>A	c.(2596-2598)AGG>AAG	p.R866K	KIF27_uc010mpw.2_Intron|KIF27_uc010mpx.2_Missense_Mutation_p.R866K	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	866	Potential.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						CAGTTGCTTCCTTTTTTCATT	0.348000													19	65					0	0	1	0	0	
NAA35	60560	broad.mit.edu	37	9	88624836	88624836	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:88624836A>C	uc004aoi.3	+	15	1417	c.1280A>C	c.(1279-1281)CAC>CCC	p.H427P	NAA35_uc004aoj.3_Missense_Mutation_p.H427P	NM_024635	NP_078911	Q5VZE5	NAA35_HUMAN	corneal wound healing-related protein	427					smooth muscle cell proliferation	cytoplasm|nucleus|plasma membrane				skin(2)|central_nervous_system(1)	3						TTTGTTACTCACTGTGTTCGG	0.318000													51	105					0	0	1	0	0	
SYK	6850	broad.mit.edu	37	9	93607823	93607823	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:93607823G>T	uc004aqz.2	+	3	730	c.525G>T	c.(523-525)CGG>CGT	p.R175R	SYK_uc004aqy.2_Silent_p.R175R|SYK_uc004ara.2_Silent_p.R175R|SYK_uc004arb.2_Silent_p.R175R|SYK_uc004arc.2_Silent_p.R175R|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	175	SH2 2.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						AAATCTCTCGGGAAGAATCTG	0.507000			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								16	38					2.23348e-06	2.2999e-06	1	1	0	
FBP2	8789	broad.mit.edu	37	9	97325689	97325689	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:97325689G>A	uc004auv.2	-	6	827	c.760C>T	c.(760-762)CAC>TAC	p.H254Y	uc004aus.1_Intron|uc004aut.1_Intron|uc004auu.2_Intron	NM_003837	NP_003828	O00757	F16P2_HUMAN	fructose-1,6-bisphosphatase 2	254					fructose metabolic process|gluconeogenesis	cytosol	fructose 1,6-bisphosphate 1-phosphatase activity|fructose-2,6-bisphosphate 2-phosphatase activity|metal ion binding				0		Acute lymphoblastic leukemia(62;0.136)				AGGGTGCGGTGCACGTCAGCC	0.557000													20	52					0	0	1	0	0	
C9orf102	375748	broad.mit.edu	37	9	98678529	98678529	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:98678529G>A	uc004avt.3	+	6	1392	c.1004G>A	c.(1003-1005)GGG>GAG	p.G335E	C9orf102_uc010mrx.1_RNA|C9orf102_uc011lum.1_Missense_Mutation_p.G37E|C9orf102_uc010mry.1_Missense_Mutation_p.G37E|C9orf102_uc010mrz.2_Missense_Mutation_p.G146E	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	335					DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				GGCCTTTTAGGGAGTGGGACC	0.423000													16	32					0	0	1	0	0	
ZNF367	195828	broad.mit.edu	37	9	99150630	99150630	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:99150630G>A	uc004awf.2	-	5	1297	c.942C>T	c.(940-942)GAC>GAT	p.D314D		NM_153695	NP_710162	Q7RTV3	ZN367_HUMAN	zinc finger protein 367	314	Potential.				regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0167)				TCTTCTCGTCGTCCTCTTCAT	0.622000													16	37					0	0	1	0	0	
ZNF367	195828	broad.mit.edu	37	9	99154788	99154788	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:99154788C>T	uc004awf.2	-	4	1077	c.722G>A	c.(721-723)CGC>CAC	p.R241H	ZNF367_uc004awg.2_Missense_Mutation_p.R241H	NM_153695	NP_710162	Q7RTV3	ZN367_HUMAN	zinc finger protein 367	241					regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0167)				CGGACAGTGGCGGTTTGCATG	0.557000													30	89					0	0	1	0	0	
GABBR2	9568	broad.mit.edu	37	9	101151210	101151210	+	Silent	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:101151210G>T	uc004ays.2	-	10	1611	c.1455C>A	c.(1453-1455)CTC>CTA	p.L485L		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	485	Helical; Name=1; (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	TGAGGGCAGAGAGGATGCTGT	0.512000													33	80					2.08457e-15	2.22707e-15	1	1	0	
GABBR2	9568	broad.mit.edu	37	9	101304265	101304265	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:101304265G>A	uc004ays.2	-	3	676	c.520C>T	c.(520-522)CGG>TGG	p.R174W		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	174	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	GGGACGGTCCGAAAGAAATAA	0.478000													10	38					0	0	1	0	0	
ANKS6	203286	broad.mit.edu	37	9	101542559	101542559	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:101542559C>T	uc004ayu.2	-	6	1301	c.1280G>A	c.(1279-1281)CGG>CAG	p.R427Q	ANKS6_uc004ayt.2_Missense_Mutation_p.R126Q|ANKS6_uc004ayv.1_5'Flank|ANKS6_uc004ayw.1_Missense_Mutation_p.R9Q|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	427										ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				GTGGCTCGGCCGGCCTTTGTC	0.547000													8	11					0	0	1	0	0	
MRPL50	54534	broad.mit.edu	37	9	104152754	104152754	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:104152754A>T	uc004bbe.2	-	2	516	c.471T>A	c.(469-471)AGT>AGA	p.S157R	MRPL50_uc011lvj.1_Intron	NM_019051	NP_061924	Q8N5N7	RM50_HUMAN	mitochondrial ribosomal protein L50	157						mitochondrion|ribosome					0		Acute lymphoblastic leukemia(62;0.0559)				TTGCTTAGTAACTCCAAGTGA	0.378000													28	69					0	0	1	0	0	
GRIN3A	116443	broad.mit.edu	37	9	104390559	104390559	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:104390559G>C	uc004bbp.1	-	4	3078	c.2477C>G	c.(2476-2478)CCT>CGT	p.P826R	GRIN3A_uc004bbq.1_Missense_Mutation_p.P826R	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	826	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CACTCCATCAGGGGTGGCTGG	0.423000													21	45					0	0	1	0	0	
GRIN3A	116443	broad.mit.edu	37	9	104449065	104449065	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:104449065C>A	uc004bbp.1	-	2	1718	c.1117G>T	c.(1117-1119)GGG>TGG	p.G373W	GRIN3A_uc004bbq.1_Missense_Mutation_p.G373W	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	373	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GCAATGAGCCCTAAGGGCAGA	0.517000													16	37					1.52009e-12	1.6123e-12	1	1	0	
SMC2	10592	broad.mit.edu	37	9	106875619	106875619	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:106875619C>T	uc004bbv.2	+	11	1565	c.1277C>T	c.(1276-1278)GCT>GTT	p.A426V	SMC2_uc004bbu.1_Missense_Mutation_p.A426V|SMC2_uc004bbw.2_Missense_Mutation_p.A426V|SMC2_uc011lvl.1_Missense_Mutation_p.A426V|SMC2_uc010mth.1_Missense_Mutation_p.A376V|SMC2_uc004bbx.2_Missense_Mutation_p.A426V	NM_001042551	NP_001036016	O95347	SMC2_HUMAN	structural maintenance of chromosomes 2	426	Potential.				cell division|mitotic chromosome condensation|symbiosis, encompassing mutualism through parasitism	condensin complex|cytoplasm|nuclear chromosome	ATP binding|protein heterodimerization activity			ovary(4)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|breast(1)	9						TTGAAGCATGCTCAACAGGAA	0.393000													24	79					0	0	1	0	0	
ZNF462	58499	broad.mit.edu	37	9	109691637	109691637	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:109691637A>G	uc004bcz.2	+	3	5733	c.5444A>G	c.(5443-5445)CAT>CGT	p.H1815R	ZNF462_uc010mto.2_Missense_Mutation_p.H1663R|ZNF462_uc004bda.2_Missense_Mutation_p.H1663R	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1815					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GCAGATGAGCATGAGAAGCCC	0.557000													17	64					0	0	1	0	0	
KIAA0368	23392	broad.mit.edu	37	9	114246732	114246732	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:114246732G>C	uc004bfe.1	-	2	181	c.181C>G	c.(181-183)CGA>GGA	p.R61G	KIAA0368_uc010muc.1_5'Flank	NM_001080398	NP_001073867			KIAA0368 protein												0						CGAACTTCTCGGCCCCGGCGC	0.687000													9	12					0	0	1	0	0	
SUSD1	64420	broad.mit.edu	37	9	114905861	114905861	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:114905861C>A	uc004bfu.2	-	4	457	c.416G>T	c.(415-417)GGG>GTG	p.G139V	SUSD1_uc010mui.2_Missense_Mutation_p.G139V|SUSD1_uc010muj.2_Missense_Mutation_p.G139V	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	139	EGF-like 3; calcium-binding (Potential).|Extracellular (Potential).					integral to membrane	calcium ion binding				0						CACGCATCGCCCTCCATGCCT	0.413000													31	64					1.06647e-15	1.14076e-15	1	1	0	
SLC46A2	57864	broad.mit.edu	37	9	115652937	115652937	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:115652937G>A	uc004bgk.2	-	1	257	c.25C>T	c.(25-27)CGG>TGG	p.R9W		NM_033051	NP_149040	Q9BY10	TSCOT_HUMAN	solute carrier family 46, member 2	9	Cytoplasmic (Potential).					integral to membrane|plasma membrane	symporter activity			central_nervous_system(1)	1						TGGCCCCTCCGCGGGCAGGTG	0.647000													6	18					0	0	1	0	0	
RGS3	5998	broad.mit.edu	37	9	116346500	116346500	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:116346500G>A	uc004bhq.2	+	21	3017	c.2808G>A	c.(2806-2808)TCG>TCA	p.S936S	RGS3_uc004bhs.2_Silent_p.S826S|RGS3_uc004bht.2_Silent_p.S655S|RGS3_uc010muy.2_Intron|RGS3_uc004bhv.2_Silent_p.S257S|RGS3_uc010muz.1_Silent_p.S275S|RGS3_uc004bhw.2_Intron|RGS3_uc011lxh.1_Silent_p.S246S|RGS3_uc004bhx.2_Silent_p.S257S|RGS3_uc004bhy.1_Silent_p.S246S|RGS3_uc004bhz.2_Silent_p.S278S	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	936					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						TGCAGAACTCGCTGCGGCGCC	0.682000													21	51					0	0	1	0	0	
COL27A1	85301	broad.mit.edu	37	9	116930829	116930829	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:116930829G>A	uc011lxl.1	+	3	994	c.994G>A	c.(994-996)GCA>ACA	p.A332T	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.A182T	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	332	Pro-rich.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						AGCCAGTAACGCACTTGATCC	0.612000													20	44					0	0	1	0	0	
COL27A1	85301	broad.mit.edu	37	9	116931439	116931439	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:116931439A>G	uc011lxl.1	+	3	1604	c.1604A>G	c.(1603-1605)AAG>AGG	p.K535R	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.K385R	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	535	Pro-rich.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GGAAGCAAGAAGCCCATTGGA	0.637000													33	62					0	0	1	0	0	
TNC	3371	broad.mit.edu	37	9	117848533	117848533	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:117848533C>A	uc004bjj.3	-	3	1839	c.1477G>T	c.(1477-1479)GGG>TGG	p.G493W	TNC_uc010mvf.2_Missense_Mutation_p.G493W	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	493	EGF-like 11.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CAGTCTTCCCCTGTGTAGCCG	0.597000													46	91					1.63038e-21	1.76316e-21	1	1	0	
DBC1	1620	broad.mit.edu	37	9	121929994	121929994	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:121929994G>A	uc004bkc.2	-	8	2110	c.1654C>T	c.(1654-1656)CGC>TGC	p.R552C		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	552					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CTGCTGTTGCGCATCTGGCAG	0.567000													15	32					0	0	1	0	0	
CDK5RAP2	55755	broad.mit.edu	37	9	123202115	123202115	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:123202115A>G	uc004bkf.2	-	24	3465	c.3284T>C	c.(3283-3285)ATG>ACG	p.M1095T	CDK5RAP2_uc010mvi.2_Missense_Mutation_p.M104T|CDK5RAP2_uc004bke.2_Missense_Mutation_p.M380T|CDK5RAP2_uc004bkg.2_Missense_Mutation_p.M1095T|CDK5RAP2_uc011lxw.1_Missense_Mutation_p.M360T|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Missense_Mutation_p.M360T|CDK5RAP2_uc011lya.1_Missense_Mutation_p.M360T|CDK5RAP2_uc004bkh.1_Missense_Mutation_p.M865T|CDK5RAP2_uc004bki.2_Missense_Mutation_p.M862T	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	1095	Interaction with MAPRE1.				brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						ATCAGTCCCCATCACACTGAC	0.423000													20	67					0	0	1	0	0	
STXBP1	6812	broad.mit.edu	37	9	130416073	130416073	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:130416073C>T	uc004brl.2	+	3	364	c.167C>T	c.(166-168)ACG>ATG	p.T56M	STXBP1_uc004brk.2_Missense_Mutation_p.T56M	NM_001032221	NP_001027392	P61764	STXB1_HUMAN	syntaxin binding protein 1 isoform b	56					axon target recognition|energy reserve metabolic process|glutamate secretion|negative regulation of synaptic transmission, GABAergic|neurotransmitter secretion|platelet aggregation|platelet degranulation|protein transport|regulation of insulin secretion|regulation of synaptic vesicle priming|synaptic vesicle maturation|vesicle docking involved in exocytosis	cytosol|mitochondrion|plasma membrane|platelet alpha granule|protein complex	identical protein binding|syntaxin-1 binding|syntaxin-2 binding			skin(1)	1						GAGGGCATAACGAGTGAGCAT	0.358000													21	22					0	0	1	0	0	
SH2D3C	10044	broad.mit.edu	37	9	130506862	130506862	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:130506862A>G	uc004bsc.2	-	7	1923	c.1781T>C	c.(1780-1782)GTC>GCC	p.V594A	SH2D3C_uc010mxo.2_Missense_Mutation_p.V434A|SH2D3C_uc004bry.2_Missense_Mutation_p.V436A|SH2D3C_uc004brz.3_Missense_Mutation_p.V240A|SH2D3C_uc011mak.1_Missense_Mutation_p.V240A|SH2D3C_uc004bsa.2_Missense_Mutation_p.V437A|SH2D3C_uc004bsb.2_Missense_Mutation_p.V526A	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	594	Ras-GEF.				JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						CACCTTGGTGACATGCCGGGC	0.632000													16	50					0	0	1	0	0	
SPTAN1	6709	broad.mit.edu	37	9	131369952	131369952	+	Silent	SNP	C	T	T	rs148554113	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:131369952C>T	uc004bvl.3	+	32	4229	c.4116C>T	c.(4114-4116)ACC>ACT	p.T1372T	SPTAN1_uc004bvm.3_Silent_p.T1372T|SPTAN1_uc004bvn.3_Silent_p.T1352T	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	1372	Spectrin 15.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						AGGATGTCACCGGAGCTGAGG	0.567000													41	89					0	0	1	0	0	
LRRC8A	56262	broad.mit.edu	37	9	131669843	131669843	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:131669843C>T	uc004bwl.3	+	3	654	c.400C>T	c.(400-402)CTC>TTC	p.L134F	LRRC8A_uc010myp.2_Missense_Mutation_p.L134F|LRRC8A_uc010myq.2_Missense_Mutation_p.L134F	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	134	Helical; (Potential).				pre-B cell differentiation	integral to membrane					0						TCTGCACACGCTCATCTTCCT	0.562000													21	44					0	0	1	0	0	
FUBP3	8939	broad.mit.edu	37	9	133506105	133506105	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:133506105G>A	uc004bzr.1	+	13	1316	c.1208G>A	c.(1207-1209)CGG>CAG	p.R403Q	FUBP3_uc004bzs.1_Missense_Mutation_p.R316Q	NM_003934	NP_003925	Q96I24	FUBP3_HUMAN	far upstream element (FUSE) binding protein 3	403	KH 4.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000279)		CCCAACCTGCGGAGATTCACC	0.602000													11	26					0	0	1	0	0	
POMT1	10585	broad.mit.edu	37	9	134387468	134387468	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:134387468A>G	uc004cav.2	+	11	1295	c.1093A>G	c.(1093-1095)ACC>GCC	p.T365A	POMT1_uc004cax.2_Missense_Mutation_p.T343A|POMT1_uc011mcj.1_Missense_Mutation_p.T121A|POMT1_uc004cau.2_Missense_Mutation_p.T343A|POMT1_uc004caw.2_Missense_Mutation_p.T289A|POMT1_uc011mck.1_Missense_Mutation_p.T226A|POMT1_uc011mcl.1_Missense_Mutation_p.T191A|POMT1_uc011mcm.1_Missense_Mutation_p.T313A|POMT1_uc011mcn.1_Missense_Mutation_p.T68A	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	365	MIR 1.				multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		GCAACAGGTGACCTGTTACCC	0.443000													4	18					0	0	1	0	0	
RAPGEF1	2889	broad.mit.edu	37	9	134465325	134465325	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:134465325G>A	uc004cbc.2	-	16	2387	c.2257C>T	c.(2257-2259)CGC>TGC	p.R753C	RAPGEF1_uc004cbb.2_Missense_Mutation_p.R771C	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	753	N-terminal Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		TTGCTGACGCGCTTCTTGAAT	0.562000													16	32					0	0	1	0	0	
REXO4	57109	broad.mit.edu	37	9	136282974	136282974	+	Translation_Start_Site	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:136282974G>A	uc004cdm.2	-	1	191	c.-9C>T	c.(-11--7)GACGG>GATGG		ADAMTS13_uc004cdp.3_Intron|REXO4_uc011mde.1_Translation_Start_Site|REXO4_uc011mdf.1_Translation_Start_Site|REXO4_uc004cdn.2_Translation_Start_Site|REXO4_uc004cdo.2_Translation_Start_Site	NM_020385	NP_065118	Q9GZR2	REXO4_HUMAN	XPMC2 prevents mitotic catastrophe 2 homolog							nucleolus	exonuclease activity|nucleic acid binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.58e-08)|Epithelial(140;9.55e-07)|all cancers(34;1.05e-05)		TCCTGCTGCCGTCCAGCGCCT	0.731000													10	38					0	0	1	0	0	
COL5A1	1289	broad.mit.edu	37	9	137593103	137593103	+	Missense_Mutation	SNP	G	A	A	rs142933609	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:137593103G>A	uc004cfe.2	+	4	960	c.578G>A	c.(577-579)CGC>CAC	p.R193H		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	193	TSP N-terminal.|Laminin G-like.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TTCCTCGACCGCAGCGACCAC	0.522000													12	18					0	0	1	0	0	
COL5A1	1289	broad.mit.edu	37	9	137622231	137622231	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:137622231C>T	uc004cfe.2	+	7	1456	c.1074C>T	c.(1072-1074)GGC>GGT	p.G358G		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	358	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TCACCTATGGCGAGGGGGAGG	0.602000													24	46					0	0	1	0	0	
KIAA0649	9858	broad.mit.edu	37	9	138378948	138378948	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:138378948C>T	uc004cfr.1	+	4	3141	c.2592C>T	c.(2590-2592)ACC>ACT	p.T864T		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	864						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		AGGGCCCCACCGCTCTTGGGA	0.632000													27	60					0	0	1	0	0	
CAMSAP1	157922	broad.mit.edu	37	9	138714328	138714328	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:138714328C>T	uc004cgr.3	-	11	2179	c.2179G>A	c.(2179-2181)GAT>AAT	p.D727N	CAMSAP1_uc004cgq.3_Missense_Mutation_p.D617N|CAMSAP1_uc010nbg.2_Missense_Mutation_p.D449N	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	727						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GGCTCTGAATCGTGGGAGTTG	0.542000													12	36					0	0	1	0	0	
SEC16A	9919	broad.mit.edu	37	9	139369735	139369735	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:139369735G>A	uc004chx.2	-	3	2642	c.2333C>T	c.(2332-2334)CCG>CTG	p.P778L	SEC16A_uc004chv.3_Missense_Mutation_p.P405L|SEC16A_uc004chw.2_Missense_Mutation_p.P778L|SEC16A_uc010nbn.2_Missense_Mutation_p.P778L|SEC16A_uc010nbo.1_Missense_Mutation_p.P778L	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	600					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GCTCTGCACCGGGGCCGCCGA	0.592000													16	26					0	0	1	0	0	
C9orf163	158055	broad.mit.edu	37	9	139379255	139379255	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:139379255C>T	uc004chy.2	+	1	1309	c.355C>T	c.(355-357)CAC>TAC	p.H119Y	SEC16A_uc004chx.2_5'Flank|SEC16A_uc010nbo.1_5'Flank	NM_152571	NP_689784	Q8N9P6	CI163_HUMAN	hypothetical protein LOC158055	119							protein binding				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.36e-06)|Epithelial(140;5.65e-06)		AGTTAGGGAGCACGTGGTAGG	0.602000											OREG0019617	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	60					0	0	1	0	0	
AGPAT2	10555	broad.mit.edu	37	9	139571989	139571989	+	Nonsense_Mutation	SNP	G	A	A	rs104894093		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:139571989G>A	uc004cii.1	-	2	304	c.202C>T	c.(202-204)CGA>TGA	p.R68*	AGPAT2_uc004cij.1_Nonsense_Mutation_p.R68*	NM_006412	NP_006403	O15120	PLCB_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 2	68					phosphatidic acid biosynthetic process|positive regulation of cytokine production|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0	all_cancers(76;0.0893)|all_epithelial(76;0.231)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.87e-06)|Epithelial(140;0.000123)		TTGAAGCTTCGCACGAACCAG	0.657000													13	29					0	0	1	0	0	
ABCA2	20	broad.mit.edu	37	9	139904081	139904081	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:139904081C>T	uc011mem.1	-	43	6791	c.6643G>A	c.(6643-6645)GGC>AGC	p.G2215S	ABCA2_uc011mel.1_Missense_Mutation_p.G2216S|ABCA2_uc004ckl.1_Missense_Mutation_p.G2146S|ABCA2_uc004ckm.1_Missense_Mutation_p.G2246S	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	2215	ABC transporter 2.				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GGGTCCATGCCTGTGGTGGGC	0.657000													30	35					0	0	1	0	0	
ABCA2	20	broad.mit.edu	37	9	139909954	139909954	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:139909954G>A	uc011mem.1	-	23	3754	c.3606C>T	c.(3604-3606)TGC>TGT	p.C1202C	ABCA2_uc011mel.1_Silent_p.C1203C|ABCA2_uc004ckl.1_Silent_p.C1133C|ABCA2_uc004ckm.1_Silent_p.C1233C|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1202	ABC transporter 1.				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GCGGGGAGCCGCAGCACTTGA	0.647000													9	23					0	0	1	0	0	
ABCA2	20	broad.mit.edu	37	9	139912743	139912743	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:139912743C>T	uc011mem.1	-	13	2025	c.1877G>A	c.(1876-1878)CGC>CAC	p.R626H	ABCA2_uc011mel.1_Missense_Mutation_p.R627H|ABCA2_uc004ckl.1_Missense_Mutation_p.R557H|ABCA2_uc004ckm.1_Missense_Mutation_p.R657H|ABCA2_uc004ckn.1_RNA|ABCA2_uc004cko.1_Missense_Mutation_p.R403H	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	626					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GGAGTTCTGGCGGATCTTGTA	0.537000													11	59					0	0	1	0	0	
GRIN1	2902	broad.mit.edu	37	9	140043558	140043558	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:140043558C>T	uc004clk.2	+	4	998	c.668C>T	c.(667-669)GCC>GTC	p.A223V	GRIN1_uc004cli.1_5'UTR|GRIN1_uc004clj.1_Missense_Mutation_p.A220V|GRIN1_uc004cll.2_Missense_Mutation_p.A223V|GRIN1_uc004clm.2_Missense_Mutation_p.A223V|GRIN1_uc004cln.2_Missense_Mutation_p.A241V|GRIN1_uc004clo.2_Missense_Mutation_p.A241V	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	223	Extracellular (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	ATCCTTTCTGCCAGGTGAGGC	0.607000													3	9					0	0	1	0	0	
NELF	26012	broad.mit.edu	37	9	140349733	140349733	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:140349733T>C	uc004cna.2	-	6	969	c.737A>G	c.(736-738)AAG>AGG	p.K246R	C9orf167_uc011mew.1_Intron|NELF_uc011mex.1_5'Flank|NELF_uc010nci.2_Missense_Mutation_p.K20R|NELF_uc011mey.1_Intron|NELF_uc011mez.1_Intron|NELF_uc004cmz.2_Missense_Mutation_p.K244R|NELF_uc004cnc.2_Intron|NELF_uc004cnb.2_Missense_Mutation_p.K246R	NM_001130969	NP_001124441	Q6X4W1	NELF_HUMAN	nasal embryonic LHRH factor isoform a	246						nucleus|plasma membrane					0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000222)|Epithelial(140;0.000888)		TTTCCGGCGCTTCCTCTCCGC	0.652000													26	35					0	0	1	0	0	
PNPLA7	375775	broad.mit.edu	37	9	140361898	140361898	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:140361898C>A	uc004cnf.2	-	25	3172	c.2835G>T	c.(2833-2835)AAG>AAT	p.K945N	C9orf167_uc011mew.1_Intron|PNPLA7_uc004cnd.1_Missense_Mutation_p.K211N|PNPLA7_uc004cne.1_Missense_Mutation_p.K211N|PNPLA7_uc011mfa.1_Missense_Mutation_p.K353N|PNPLA7_uc010ncj.1_Missense_Mutation_p.K970N	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	945	Patatin.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		CCGCCAAGGCCTTGAGAACGC	0.647000													21	25					1.10923e-09	1.16393e-09	1	1	0	
CSF2RA	1438	broad.mit.edu	37	X	1409361	1409361	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:1409361G>T	uc010nct.2	+	8	927	c.605G>T	c.(604-606)GGC>GTC	p.G202V	CSF2RA_uc011mhb.1_Missense_Mutation_p.G202V|CSF2RA_uc004cpq.2_Missense_Mutation_p.G202V|CSF2RA_uc004cpn.2_Missense_Mutation_p.G202V|CSF2RA_uc004cpo.2_Missense_Mutation_p.G202V|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.G69V|CSF2RA_uc004cpp.2_Missense_Mutation_p.G202V|CSF2RA_uc010ncv.2_Missense_Mutation_p.G202V|CSF2RA_uc004cpr.2_Missense_Mutation_p.G202V	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	202	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	CGAGAAATTGGCATCCAATTC	0.383000													44	274					3.86236e-30	4.20267e-30	1	1	0	
SLC25A6	293	broad.mit.edu	37	X	1508411	1508411	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:1508411C>T	uc004cpt.2	-	2	417	c.321G>A	c.(319-321)ACG>ACA	p.T107T	SLC25A6_uc004cpu.2_RNA	NM_001636	NP_001627	P12236	ADT3_HUMAN	adenine nucleotide translocator 3	107				KHTQ -> RHA (in Ref. 5; AAA36750).	active induction of host immune response by virus|apoptosis|energy reserve metabolic process|regulation of insulin secretion|viral infectious cycle	integral to membrane|mitochondrial inner membrane presequence translocase complex	ATP:ADP antiporter activity|protein binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Clodronate(DB00720)	TCCAGAACTGCGTGTGCTTGT	0.612000													85	114					0	0	1	0	0	
CD99	4267	broad.mit.edu	37	X	2656273	2656273	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:2656273C>T	uc004cqm.2	+	9	682	c.508C>T	c.(508-510)CGG>TGG	p.R170W	CD99_uc010nda.2_Missense_Mutation_p.R154W|CD99_uc004cqn.2_RNA|CD99_uc004cqo.2_Missense_Mutation_p.R169W	NM_002414	NP_002405	P14209	CD99_HUMAN	CD99 antigen isoform a precursor	170	Cytoplasmic (Potential).				cell adhesion	cytoplasm|integral to plasma membrane				skin(1)	1						GGAGAGCCACCGGAATGCCAA	0.507000													51	63					0	0	1	0	0	
GYG2	8908	broad.mit.edu	37	X	2772036	2772036	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:2772036G>T	uc004cqs.1	+	5	540	c.258G>T	c.(256-258)AAG>AAT	p.K86N	GYG2_uc004cqt.1_Missense_Mutation_p.K55N|GYG2_uc004cqu.1_Missense_Mutation_p.K55N|GYG2_uc004cqv.1_Translation_Start_Site|GYG2_uc004cqw.1_Missense_Mutation_p.K46N|GYG2_uc004cqx.1_Missense_Mutation_p.K55N|GYG2_uc010ndc.1_5'Flank	NM_003918	NP_003909	O15488	GLYG2_HUMAN	glycogenin 2 isoform b	86					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|soluble fraction	glycogenin glucosyltransferase activity			ovary(1)|kidney(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCCTCTCGAAGGTGTTCGATG	0.512000													5	85					0.000602214	0.000609462	1	1	0	
ARSH	347527	broad.mit.edu	37	X	2936680	2936680	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:2936680G>A	uc011mhj.1	+	5	870	c.870G>A	c.(868-870)GGG>GGA	p.G290G		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	290						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				GCAGGTATGGGGACAATGTAG	0.398000													20	53					0	0	1	0	0	
MXRA5	25878	broad.mit.edu	37	X	3261860	3261860	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:3261860C>T	uc004crg.3	-	2	172	c.15G>A	c.(13-15)GCG>GCA	p.A5A		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	5						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CCCCCCAGTGCGCGCGCTTGG	0.627000													3	14					0	0	1	0	0	
NLGN4X	57502	broad.mit.edu	37	X	5811220	5811220	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:5811220A>G	uc010ndh.2	-	6	2590	c.2089T>C	c.(2089-2091)TAC>CAC	p.Y697H	NLGN4X_uc004crp.2_Missense_Mutation_p.Y717H|NLGN4X_uc004crq.2_Missense_Mutation_p.Y697H|NLGN4X_uc010ndi.2_Missense_Mutation_p.Y734H|NLGN4X_uc004crr.2_Missense_Mutation_p.Y697H|NLGN4X_uc010ndj.2_Missense_Mutation_p.Y697H	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	697	Helical; (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						TTTTTGTAGTACAGCGCCGCA	0.502000													44	83					0	0	1	0	0	
SHROOM2	357	broad.mit.edu	37	X	9864049	9864049	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:9864049G>A	uc004csu.1	+	4	2191	c.2101G>A	c.(2101-2103)GAC>AAC	p.D701N		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	701	ASD1.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CAAGCGCCGCGACTTGGACCC	0.647000													9	12					0	0	1	0	0	
SHROOM2	357	broad.mit.edu	37	X	9905625	9905625	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:9905625A>G	uc004csu.1	+	7	4129	c.4039A>G	c.(4039-4041)ATG>GTG	p.M1347V	SHROOM2_uc004csv.2_Missense_Mutation_p.M182V|SHROOM2_uc011mic.1_Missense_Mutation_p.M182V|SHROOM2_uc004csw.1_Missense_Mutation_p.M182V	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1347	ASD2.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				TATGGACTTGATGGAAGGCAT	0.562000													15	39					0	0	1	0	0	
PRPS2	5634	broad.mit.edu	37	X	12838801	12838801	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:12838801T>C	uc004cvb.2	+	6	867	c.743T>C	c.(742-744)CTT>CCT	p.L248P	PRPS2_uc004cva.2_Missense_Mutation_p.L251P|PRPS2_uc010nec.2_Missense_Mutation_p.L126P	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	248					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						TATGCTATCCTTACCCATGGG	0.438000													49	61					0	0	1	0	0	
PTCHD1	139411	broad.mit.edu	37	X	23412229	23412229	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:23412229G>C	uc004dal.3	+	3	2602	c.2594G>C	c.(2593-2595)CGG>CCG	p.R865P		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	865					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						CCTGAGAACCGGGAGGAAATT	0.403000													54	75					0	0	1	0	0	
CXorf58	254158	broad.mit.edu	37	X	23953371	23953371	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:23953371G>A	uc004daz.1	+	7	958	c.614G>A	c.(613-615)CGC>CAC	p.R205H	CXorf58_uc011mju.1_Missense_Mutation_p.R205H	NM_152761	NP_689974	Q96LI9	CX058_HUMAN	hypothetical protein LOC254158	205											0						AACAGCTGGCGCAAATTAAAT	0.368000													65	136					0	0	1	0	0	
DCAF8L1	139425	broad.mit.edu	37	X	27998805	27998805	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:27998805T>C	uc004dbx.1	-	1	762	c.647A>G	c.(646-648)GAT>GGT	p.D216G		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	216	WD 1.									ovary(3)|skin(1)	4						CCTTAAGTCATCACCGCTACT	0.517000													12	39					0	0	1	0	0	
TAB3	257397	broad.mit.edu	37	X	30872538	30872538	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:30872538G>C	uc004dcj.2	-	6	1907	c.1244C>G	c.(1243-1245)TCT>TGT	p.S415C	TAB3_uc004dck.2_Missense_Mutation_p.S415C|TAB3_uc010ngl.2_Missense_Mutation_p.S415C	NM_152787	NP_690000	Q8N5C8	TAB3_HUMAN	mitogen-activated protein kinase kinase kinase 7	415	Pro-rich.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein binding|zinc ion binding			ovary(1)	1						TGGTTGACTAGATATCCCTCT	0.443000													35	142					0	0	1	0	0	
MAGEB16	139604	broad.mit.edu	37	X	35820609	35820609	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:35820609C>T	uc010ngt.1	+	2	575	c.296C>T	c.(295-297)TCA>TTA	p.S99L		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	99										lung(3)|ovary(2)|breast(1)|skin(1)	7						CCAAGCTCCTCAGAGGATACA	0.478000													3	24					0	0	1	0	0	
FAM47C	442444	broad.mit.edu	37	X	37026823	37026823	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:37026823C>T	uc004ddl.1	+	1	354	c.340C>T	c.(340-342)CGG>TGG	p.R114W		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	114										ovary(3)	3						ACAGCCAGCACGGAAGGCGTT	0.537000													8	129					0	0	1	0	0	
MED14	9282	broad.mit.edu	37	X	40542153	40542153	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:40542153C>T	uc004dex.3	-	17	2293	c.2153G>A	c.(2152-2154)CGC>CAC	p.R718H		NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	718	Interaction with SREBF1.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						TACCCAAGTGCGGTTATTTCT	0.428000													27	66					0	0	1	0	0	
CXorf36	79742	broad.mit.edu	37	X	45010931	45010931	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:45010931C>T	uc004dgg.2	-	5	1343	c.1268G>A	c.(1267-1269)CGT>CAT	p.R423H		NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	423						extracellular region				lung(1)	1						ATCTGGGTAACGATAGGCAAA	0.557000													25	59					0	0	1	0	0	
SLC38A5	92745	broad.mit.edu	37	X	48319068	48319068	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:48319068C>T	uc010nid.2	-	14	1213	c.1035G>A	c.(1033-1035)GCG>GCA	p.A345A	SLC38A5_uc004djk.3_Silent_p.A294A	NM_033518	NP_277053	Q8WUX1	S38A5_HUMAN	solute carrier family 38, member 5	345	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane				ovary(3)	3						TGAGGGTCACCGCGAGCAGCA	0.522000													8	23					0	0	1	0	0	
TBC1D25	4943	broad.mit.edu	37	X	48418771	48418771	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:48418771G>A	uc004dka.1	+	6	1586	c.1475G>A	c.(1474-1476)AGT>AAT	p.S492N	TBC1D25_uc011mly.1_Missense_Mutation_p.S434N|TBC1D25_uc004dkb.1_Missense_Mutation_p.S238N|TBC1D25_uc011mlz.1_Missense_Mutation_p.S238N|TBC1D25_uc011mma.1_Missense_Mutation_p.S238N|TBC1D25_uc004dkc.1_Missense_Mutation_p.S238N|TBC1D25_uc011mmb.1_Missense_Mutation_p.S496N|TBC1D25_uc011mmc.1_Missense_Mutation_p.S238N|TBC1D25_uc011mmd.1_Missense_Mutation_p.S238N	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	492						intracellular	Rab GTPase activator activity			ovary(1)	1						GCCACAGCCAGTCAGGGGCCT	0.642000													16	38					0	0	1	0	0	
ERAS	3266	broad.mit.edu	37	X	48687628	48687628	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:48687628G>A	uc004dky.1	+	1	346	c.95G>A	c.(94-96)CGC>CAC	p.R32H		NM_181532	NP_853510	Q7Z444	RASE_HUMAN	ES cell expressed Ras precursor	32					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity			lung(4)|urinary_tract(1)	5						CAGGCACGCCGCAGGGATGTT	0.657000													5	15					0	0	1	0	0	
SSX8	280659	broad.mit.edu	37	X	52654088	52654088	+	RNA	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:52654088A>G	uc011moa.1	+	2		c.325A>G			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						CCCAGGGATGATGATAAAGCA	0.562000													41	72					0	0	1	0	0	
KDM5C	8242	broad.mit.edu	37	X	53227713	53227713	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:53227713G>A	uc004drz.2	-	17	3008	c.2475C>T	c.(2473-2475)TGC>TGT	p.C825C	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Silent_p.C758C|KDM5C_uc004dsa.2_Silent_p.C824C	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	825					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						CTCGGGACACGCAAGCCTCTG	0.567000			N|F|S		clear cell renal carcinoma								7	9					0	0	1	0	0	
KDM5C	8242	broad.mit.edu	37	X	53247013	53247013	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:53247013G>A	uc004drz.2	-	4	1020	c.487C>T	c.(487-489)CCC>TCC	p.P163S	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Missense_Mutation_p.P96S|KDM5C_uc004dsa.2_Missense_Mutation_p.P163S	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	163	ARID.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						ATTTCATAGGGATAAACAATG	0.537000			N|F|S		clear cell renal carcinoma								13	35					0	0	1	0	0	
PHF8	23133	broad.mit.edu	37	X	54011506	54011506	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:54011506G>A	uc004dsu.2	-	18	2465	c.2392C>T	c.(2392-2394)CTG>TTG	p.L798L	PHF8_uc004dst.2_Silent_p.L762L|PHF8_uc004dsv.2_Silent_p.L628L|PHF8_uc004dsw.2_Silent_p.L661L|PHF8_uc004dsx.2_Silent_p.L526L|PHF8_uc004dsy.2_Silent_p.L745L	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	798	Ser-rich.				brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						ACTGTGCCCAGCCCACTGCTG	0.642000													14	37					0	0	1	0	0	
FGD1	2245	broad.mit.edu	37	X	54496845	54496845	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:54496845G>A	uc004dtg.2	-	4	1439	c.705C>T	c.(703-705)AGC>AGT	p.S235S	FGD1_uc011moi.1_5'UTR	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	235	Pro-rich.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGGGACCTGGGCTGGGGCCAG	0.642000													10	14					0	0	1	0	0	
ITIH5L	347365	broad.mit.edu	37	X	54800553	54800553	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:54800553A>G	uc004dtj.2	-	6	894	c.864T>C	c.(862-864)ATT>ATC	p.I288I		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	288	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TGCTTACGTCAATAACAAAAA	0.408000													6	30					0	0	1	0	0	
ZC3H12B	340554	broad.mit.edu	37	X	64721989	64721989	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:64721989G>C	uc010nko.2	+	5	1387	c.1378G>C	c.(1378-1380)GTT>CTT	p.V460L		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	460							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						TGCCCTAAGTGTTCCCACAAT	0.597000													32	63					0	0	1	0	0	
LAS1L	81887	broad.mit.edu	37	X	64749526	64749526	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:64749526G>A	uc004dwa.1	-	5	819	c.747C>T	c.(745-747)AGC>AGT	p.S249S	LAS1L_uc004dwc.1_Silent_p.S249S|LAS1L_uc004dwd.1_Silent_p.S207S	NM_031206	NP_112483	Q9Y4W2	LAS1L_HUMAN	LAS1-like	249						MLL1 complex|nucleolus	protein binding			ovary(3)|large_intestine(1)	4						CCACCTCTTCGCTGCCTTTGC	0.488000													24	59					0	0	1	0	0	
AR	367	broad.mit.edu	37	X	66766153	66766153	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:66766153C>A	uc004dwu.1	+	1	2280	c.1165C>A	c.(1165-1167)CTG>ATG	p.L389M	AR_uc011mpd.1_Missense_Mutation_p.L389M|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Missense_Mutation_p.L389M	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	387	Modulating.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	TCGCATCAAGCTGGAGAACCC	0.716000									Androgen_Insensitivity_Syndrome				3	9					6.4e-05	6.51435e-05	1	1	0	
OPHN1	4983	broad.mit.edu	37	X	67293124	67293124	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:67293124A>G	uc004dww.3	-	20	1998	c.1704T>C	c.(1702-1704)CCT>CCC	p.P568P	OPHN1_uc011mpg.1_Silent_p.P568P	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	568					axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						CGCTTTCCTCAGGTGGACCTA	0.473000													8	32					0	0	1	0	0	
FAM155B	27112	broad.mit.edu	37	X	68725895	68725895	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:68725895C>T	uc004dxk.2	+	1	818	c.770C>T	c.(769-771)GCT>GTT	p.A257V		NM_015686	NP_056501	O75949	F155B_HUMAN	transmembrane protein 28	257						integral to membrane				ovary(1)|breast(1)	2						GACCGACACGCTCAGGAAAAA	0.592000													8	14					0	0	1	0	0	
DLG3	1741	broad.mit.edu	37	X	69720431	69720431	+	Splice_Site	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:69720431G>A	uc004dyi.1	+	17	2583	c.2255_splice	c.e17+1	p.M752_splice	DLG3_uc004dyj.1_Splice_Site_p.M447_splice|DLG3_uc011mpn.1_Splice_Site_p.M300_splice	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a						axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					AAGCCCTTATGTAAGTGTTGA	0.443000													12	46					0	0	1	0	0	
MED12	9968	broad.mit.edu	37	X	70348159	70348159	+	Missense_Mutation	SNP	G	A	A	rs41303701		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:70348159G>A	uc004dyy.2	+	23	3422	c.3223G>A	c.(3223-3225)GCA>ACA	p.A1075T	MED12_uc011mpq.1_Missense_Mutation_p.A1075T|MED12_uc004dyz.2_Missense_Mutation_p.A1075T|MED12_uc004dza.2_Missense_Mutation_p.A922T|MED12_uc010nla.2_5'Flank	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1075					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					GAATGACATCGCAATCCTGTG	0.483000													32	63					0	0	1	0	0	
ACRC	93953	broad.mit.edu	37	X	70823942	70823942	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:70823942C>T	uc004eae.2	+	8	1316	c.815C>T	c.(814-816)TCG>TTG	p.S272L	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	272	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					AGTGATGATTCGGAAGCTCCC	0.552000													69	169					0	0	1	0	0	
SLC16A2	6567	broad.mit.edu	37	X	73744204	73744204	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:73744204C>A	uc004ebt.2	+	3	974	c.808C>A	c.(808-810)CTG>ATG	p.L270M	SLC16A2_uc010nlr.1_Translation_Start_Site	NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	196	Extracellular (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	CTCCCTAAGCCTGCGCTACTT	0.567000													13	35					6.53275e-17	7.01328e-17	1	1	0	
MAGEE2	139599	broad.mit.edu	37	X	75004553	75004553	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:75004553A>C	uc004ecj.1	-	1	519	c.334T>G	c.(334-336)TCC>GCC	p.S112A		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	112	MAGE 1.									ovary(1)|skin(1)	2						AGCATCTCGGACTGCTGGATA	0.527000													6	22					0	0	1	0	0	
ATRX	546	broad.mit.edu	37	X	76814141	76814141	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:76814141T>C	uc004ecp.3	-	29	6735	c.6503A>G	c.(6502-6504)CAG>CGG	p.Q2168R	ATRX_uc004ecq.3_Missense_Mutation_p.Q2130R|ATRX_uc004eco.3_Missense_Mutation_p.Q1953R	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2168	Helicase C-terminal.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TAAACCTACCTGAGCTAAGAA	0.328000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						45	85					0	0	1	0	0	
MAGT1	84061	broad.mit.edu	37	X	77111078	77111078	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:77111078G>A	uc004fof.2	-	6	840	c.778C>T	c.(778-780)CTT>TTT	p.L260F	MAGT1_uc004fog.3_Intron	NM_032121	NP_115497	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	228	Helical; (Potential).				protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				upper_aerodigestive_tract(1)	1						GTCATAGCAAGCACAAAACAC	0.373000													8	38					0	0	1	0	0	
PGAM4	441531	broad.mit.edu	37	X	77224949	77224949	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:77224949C>T	uc004ecy.1	-	1	187	c.187G>A	c.(187-189)GTG>ATG	p.V63M	ATP7A_uc004ecw.2_Intron|ATP7A_uc004ecx.3_Intron	NM_001029891	NP_001025062	Q8N0Y7	PGAM4_HUMAN	bisphosphoglycerate mutase 4	63					glycolysis		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity				0						GTCCGGATCACTCTCTTCTGC	0.607000													42	116					0	0	1	0	0	
DACH2	117154	broad.mit.edu	37	X	85769380	85769380	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:85769380T>G	uc004eew.2	+	3	796	c.626T>G	c.(625-627)CTT>CGT	p.L209R	DACH2_uc004eex.2_Missense_Mutation_p.L196R|DACH2_uc010nmq.2_Missense_Mutation_p.L75R|DACH2_uc011mra.1_Missense_Mutation_p.L42R|DACH2_uc010nmr.2_5'UTR	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	209					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						TCGCCAGGACTTATCACTCCG	0.493000													5	13					0	0	1	0	0	
KLHL4	56062	broad.mit.edu	37	X	86890732	86890732	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:86890732C>A	uc004efb.2	+	9	2064	c.1882C>A	c.(1882-1884)CCT>ACT	p.P628T	KLHL4_uc004efa.2_Missense_Mutation_p.P628T	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	628	Kelch 5.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GCATGATGCCCCTGCTTCCAA	0.408000													19	27					5.03518e-11	5.30557e-11	1	1	0	
CPXCR1	53336	broad.mit.edu	37	X	88008751	88008751	+	Silent	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:88008751C>A	uc004efd.3	+	3	595	c.336C>A	c.(334-336)TCC>TCA	p.S112S	CPXCR1_uc004efc.3_Silent_p.S112S	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	112						intracellular	zinc ion binding			ovary(3)	3						GATCAAGATCCCACTCAGGGA	0.393000													17	21					3.52763e-06	3.62198e-06	1	1	0	
PABPC5	140886	broad.mit.edu	37	X	90690585	90690585	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:90690585C>T	uc004efg.2	+	2	449	c.9C>T	c.(7-9)AGC>AGT	p.S3S	PABPC5_uc004eff.1_Intron	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	3						cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						AGATGGGGAGCGGGGAGCCTA	0.498000													6	21					0	0	1	0	0	
PABPC5	140886	broad.mit.edu	37	X	90690988	90690988	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:90690988G>A	uc004efg.2	+	2	852	c.412G>A	c.(412-414)GTA>ATA	p.V138I	PABPC5_uc004eff.1_Intron	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	138	RRM 2.					cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						CTGCAAAGTCGTATGCGATGA	0.453000													21	53					0	0	1	0	0	
PCDH19	57526	broad.mit.edu	37	X	99551563	99551563	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:99551563C>T	uc010nmz.2	-	6	4835	c.3159G>A	c.(3157-3159)CGG>CGA	p.R1053R	PCDH19_uc004efw.3_Silent_p.R1005R|PCDH19_uc004efx.3_Silent_p.R1006R	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1053	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TGCCTGCCTCCCGGATAACGC	0.597000													10	33					0	0	1	0	0	
PCDH19	57526	broad.mit.edu	37	X	99662739	99662739	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:99662739C>T	uc010nmz.2	-	1	2533	c.857G>A	c.(856-858)CGC>CAC	p.R286H	PCDH19_uc004efw.3_Missense_Mutation_p.R286H|PCDH19_uc004efx.3_Missense_Mutation_p.R286H	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	286	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						AAAGAGCTCGCGCGTGCGGTC	0.607000													23	61					0	0	1	0	0	
ESX1	80712	broad.mit.edu	37	X	103495265	103495266	+	Missense_Mutation	DNP	GC	AG	AG	rs141524947		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:103495265_103495266GC>AG	uc004ely.2	-	4	922_923	c.864_865GC>CT	c.(862-867)GGGCCA>GGCTCA	p.P289S		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	289	6.|15 X 9 AA tandem repeats of P-P-x-x-P-x- P-P-x.				negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCCATGCGTGGCCCGGGTGGCA	0.559000													7	39					0	0	1	0	0	
IL1RAPL2	26280	broad.mit.edu	37	X	104999216	104999216	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:104999216A>G	uc004elz.1	+	10	1994	c.1238A>G	c.(1237-1239)CAA>CGA	p.Q413R		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	413	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						AAAGTGGACCAAGATACTTTA	0.373000													19	55					0	0	1	0	0	
MORC4	79710	broad.mit.edu	37	X	106185767	106185767	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:106185767T>C	uc004emu.3	-	15	2597	c.2354A>G	c.(2353-2355)GAA>GGA	p.E785G	MORC4_uc004emp.3_Intron|MORC4_uc004emv.3_Missense_Mutation_p.E785G|MORC4_uc004emw.3_Missense_Mutation_p.E533G	NM_024657	NP_078933	Q8TE76	MORC4_HUMAN	zinc finger, CW type with coiled-coil domain 2	785	Potential.						ATP binding|zinc ion binding			ovary(1)	1						CAAATTCCTTTCAGCCAAAAC	0.423000													32	91					0	0	1	0	0	
VSIG1	340547	broad.mit.edu	37	X	107310351	107310351	+	Silent	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:107310351C>T	uc004eno.2	+	3	560	c.399C>T	c.(397-399)AAC>AAT	p.N133N	VSIG1_uc011msk.1_Silent_p.N169N	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	133	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCATCCTCAACGTCAGTGTGT	0.433000													60	105					0	0	1	0	0	
GUCY2F	2986	broad.mit.edu	37	X	108708382	108708382	+	Missense_Mutation	SNP	C	T	T	rs143967019		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:108708382C>T	uc004eod.3	-	3	1297	c.1021G>A	c.(1021-1023)GAG>AAG	p.E341K	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	341	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TGATCGAACTCCAGCTTCTCA	0.418000													55	77					0	0	1	0	0	
DCX	1641	broad.mit.edu	37	X	110574173	110574173	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:110574173C>T	uc004epd.2	-	5	1320	c.1148G>A	c.(1147-1149)CGC>CAC	p.R383H	DCX_uc011msv.1_Missense_Mutation_p.R383H|DCX_uc004epe.2_Missense_Mutation_p.R302H|DCX_uc004epf.2_Missense_Mutation_p.R302H|DCX_uc004epg.2_Missense_Mutation_p.R302H	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	383	Pro/Ser-rich.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						CTTGCTTCGGCGCATAGGACC	0.527000													11	145					0	0	1	0	0	
TRPC5	7224	broad.mit.edu	37	X	111022245	111022245	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:111022245T>C	uc004epl.1	-	10	3119	c.2200A>G	c.(2200-2202)ACA>GCA	p.T734A		NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	734	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CCCTCATGTGTTTTGGAATTT	0.323000													11	17					0	0	1	0	0	
ZCCHC16	340595	broad.mit.edu	37	X	111698264	111698264	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:111698264T>C	uc004epo.1	+	3	749	c.308T>C	c.(307-309)CTA>CCA	p.L103P		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	103							nucleic acid binding|zinc ion binding			ovary(1)	1						TTTGATTACCTATCTCAGCAG	0.408000													52	81					0	0	1	0	0	
AMOT	154796	broad.mit.edu	37	X	112025831	112025831	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:112025831C>T	uc004epr.2	-	8	2177	c.2177G>A	c.(2176-2178)CGC>CAC	p.R726H	AMOT_uc004eps.2_Missense_Mutation_p.R317H|AMOT_uc011mtc.1_5'Flank|hsa-mir-4329|MI0015901_5'Flank	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	726	Potential.				actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						TTTCTGGATGCGAGCTTCTAG	0.483000													24	48					0	0	1	0	0	
AMOT	154796	broad.mit.edu	37	X	112054516	112054516	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:112054516C>T	uc004epr.2	-	3	1498	c.1498G>A	c.(1498-1500)GAG>AAG	p.E500K	AMOT_uc004eps.2_Missense_Mutation_p.E91K|AMOT_uc004ept.1_Missense_Mutation_p.E500K	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	500	Potential.				actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						CTCCGAATCTCGCCCTCTAGC	0.507000													56	134					0	0	1	0	0	
LRCH2	57631	broad.mit.edu	37	X	114384422	114384422	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:114384422G>A	uc010nqe.2	-	14	1694	c.1663C>T	c.(1663-1665)CGG>TGG	p.R555W	LRCH2_uc004epz.2_Missense_Mutation_p.R555W	NM_020871	NP_065922	Q5VUJ6	LRCH2_HUMAN	leucine-rich repeats and calponin homology (CH)	555										ovary(1)	1						TGTTTGCTCCGCCTCCTTTCT	0.318000													14	28					0	0	1	0	0	
DOCK11	139818	broad.mit.edu	37	X	117817145	117817145	+	Missense_Mutation	SNP	A	G	G	rs113662446		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:117817145A>G	uc004eqp.2	+	52	6130	c.6067A>G	c.(6067-6069)ATG>GTG	p.M2023V	DOCK11_uc004eqq.2_Missense_Mutation_p.M1802V	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	2023	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						TTTCAGAGACATGGTAAAAGA	0.373000													27	84					0	0	1	0	0	
KIAA1210	57481	broad.mit.edu	37	X	118221820	118221820	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:118221820G>A	uc004era.3	-	11	3373	c.3373C>T	c.(3373-3375)CAG>TAG	p.Q1125*		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1125										ovary(4)|skin(1)	5						ACAGTCAACTGGGAAAGATGT	0.473000													30	106					0	0	1	0	0	
KIAA1210	57481	broad.mit.edu	37	X	118223448	118223448	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:118223448A>T	uc004era.3	-	11	1745	c.1745T>A	c.(1744-1746)GTC>GAC	p.V582D		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	582										ovary(4)|skin(1)	5						CGAGAAAGGGACATTCCTGGC	0.483000													25	76					0	0	1	0	0	
NKRF	55922	broad.mit.edu	37	X	118723881	118723881	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:118723881C>T	uc004erq.2	-	2	2160	c.1507G>A	c.(1507-1509)GCT>ACT	p.A503T	NKRF_uc004err.2_Missense_Mutation_p.A503T	NM_017544	NP_060014	O15226	NKRF_HUMAN	transcription factor NRF	503					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|double-stranded RNA binding			ovary(1)|central_nervous_system(1)	2						TCCCCAGCAGCTTCATATTTG	0.418000													45	142					0	0	1	0	0	
ANKRD58	347454	broad.mit.edu	37	X	118893435	118893435	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:118893435G>A	uc010nql.2	+	1	860	c.805G>A	c.(805-807)GCG>ACG	p.A269T		NM_001105576	NP_001099046	A6NJG2	ANR58_HUMAN	ankyrin repeat domain 58	269											0						GTGGAGGGCCGCGAGCGCAGT	0.677000													4	13					0	0	1	0	0	
DCAF12L1	139170	broad.mit.edu	37	X	125685584	125685584	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:125685584C>A	uc004eul.2	-	1	1259	c.1008G>T	c.(1006-1008)CAG>CAT	p.Q336H		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	336										skin(3)|ovary(1)	4						TCTGCTGGTCCTGGCGCAGAT	0.597000													15	39					3.52763e-06	3.62198e-06	1	1	0	
DCAF12L1	139170	broad.mit.edu	37	X	125685809	125685809	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:125685809A>G	uc004eul.2	-	1	1034	c.783T>C	c.(781-783)AGT>AGC	p.S261S		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	261	WD 3.									skin(3)|ovary(1)	4						CCTTGCGGTTACTGGGGTTGA	0.637000													12	28					0	0	1	0	0	
DDX26B	203522	broad.mit.edu	37	X	134713913	134713913	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:134713913G>A	uc004eyw.3	+	15	2572	c.2209G>A	c.(2209-2211)GCA>ACA	p.A737T	DDX26B_uc004eyx.3_Missense_Mutation_p.A338T	NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	737											0	Acute lymphoblastic leukemia(192;6.56e-05)					TGGTAGTAACGCATTTGTAGG	0.443000													14	67					0	0	1	0	0	
GPR112	139378	broad.mit.edu	37	X	135429446	135429446	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:135429446G>A	uc004ezu.1	+	6	3872	c.3581G>A	c.(3580-3582)GGT>GAT	p.G1194D	GPR112_uc010nsb.1_Missense_Mutation_p.G989D|GPR112_uc010nsc.1_Missense_Mutation_p.G961D	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1194	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TTCAGTGGTGGTGGAGTTGTT	0.468000													35	122					0	0	1	0	0	
BRS3	680	broad.mit.edu	37	X	135574496	135574496	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:135574496A>G	uc004ezv.1	+	3	1311	c.1162A>G	c.(1162-1164)ACT>GCT	p.T388A		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	388	Cytoplasmic (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GACCTCGTTCACTGGGTGTAG	0.527000													13	73					0	0	1	0	0	
GPR101	83550	broad.mit.edu	37	X	136112978	136112978	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:136112978C>T	uc011mwh.1	-	1	856	c.856G>A	c.(856-858)GCC>ACC	p.A286T		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	286	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					CCTTCCTTGGCCTTCAGGCTG	0.612000													74	104					0	0	1	0	0	
ZIC3	7547	broad.mit.edu	37	X	136649719	136649719	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:136649719C>T	uc004fak.2	+	1	1374	c.869C>T	c.(868-870)CCG>CTG	p.P290L		NM_003413	NP_003404	O60481	ZIC3_HUMAN	zinc finger protein of the cerebellum 3	290					cell differentiation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTGGGGGGCCCGGAGCAGAAC	0.607000													21	61					0	0	1	0	0	
MAGEC1	9947	broad.mit.edu	37	X	140993747	140993747	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:140993747C>T	uc004fbt.2	+	4	843	c.557C>T	c.(556-558)ACT>ATT	p.T186I	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	186							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCTGAGAGTACTCAAAGTCCT	0.502000										HNSCC(15;0.026)			21	171					0	0	1	0	0	
MAGEC1	9947	broad.mit.edu	37	X	140996506	140996506	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:140996506G>A	uc004fbt.2	+	4	3602	c.3316G>A	c.(3316-3318)GCT>ACT	p.A1106T	MAGEC1_uc010nsl.1_Missense_Mutation_p.A173T	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1106	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTACAAGGATGCTTTGAAAGA	0.453000										HNSCC(15;0.026)			52	84					0	0	1	0	0	
SLITRK2	84631	broad.mit.edu	37	X	144906159	144906159	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:144906159C>T	uc004fcd.2	+	5	3206	c.2216C>T	c.(2215-2217)GCC>GTC	p.A739V	SLITRK2_uc010nsp.2_Missense_Mutation_p.A739V|SLITRK2_uc010nso.2_Missense_Mutation_p.A739V|SLITRK2_uc011mwq.1_Missense_Mutation_p.A739V|SLITRK2_uc011mwr.1_Missense_Mutation_p.A739V|SLITRK2_uc011mws.1_Missense_Mutation_p.A739V|SLITRK2_uc004fcg.2_Missense_Mutation_p.A739V|SLITRK2_uc011mwt.1_Missense_Mutation_p.A739V|CXorf1_uc004fch.2_5'Flank	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	739	Cytoplasmic (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					ACAATAAGTGCCACTGAGCTG	0.507000													46	108					0	0	1	0	0	
MIR509-1	574514	broad.mit.edu	37	X	146342113	146342113	+	RNA	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:146342113C>T	hsa-mir-509-1|MI0003196	-			c.31C>T			MIR509-2_hsa-mir-509-2|MI0005530_5'Flank|MIR509-3_hsa-mir-509-3|MI0005717_5'Flank																	0						ATGATTGCCACTGTCTGCAGT	0.433000													36	118					0	0	1	0	0	
MTMR1	8776	broad.mit.edu	37	X	149905231	149905231	+	Silent	SNP	G	A	A	rs144577498		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:149905231G>A	uc004fei.2	+	10	1356	c.1221G>A	c.(1219-1221)ACG>ACA	p.T407T	MTMR1_uc011mya.1_Silent_p.T313T|MTMR1_uc004feh.1_Silent_p.T415T|MTMR1_uc004fej.2_RNA|MTMR1_uc010ntf.2_Intron	NM_003828	NP_003819	Q13613	MTMR1_HUMAN	myotubularin-related protein 1	407	Myotubularin phosphatase.					plasma membrane	protein tyrosine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGGATGGGACGCATTGGCTGG	0.438000													16	30					0	0	1	0	0	
ZNF185	7739	broad.mit.edu	37	X	152083707	152083707	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:152083707G>A	uc010ntv.1	+	3	221	c.184G>A	c.(184-186)GCC>ACC	p.A62T	ZNF185_uc011myg.1_Missense_Mutation_p.A62T|ZNF185_uc011myh.1_Missense_Mutation_p.A62T|ZNF185_uc011myi.1_Missense_Mutation_p.A62T|ZNF185_uc011myj.1_Missense_Mutation_p.A62T|ZNF185_uc011myk.1_Missense_Mutation_p.A62T|ZNF185_uc004fgw.3_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	62						cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCGGAGTCGCGCCACATCCTT	0.622000													4	18					0	0	1	0	0	
ZNF185	7739	broad.mit.edu	37	X	152113917	152113917	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:152113917G>A	uc010ntv.1	+	16	1352	c.1315G>A	c.(1315-1317)GCT>ACT	p.A439T	ZNF185_uc011myg.1_Missense_Mutation_p.A471T|ZNF185_uc011myh.1_Missense_Mutation_p.A442T|ZNF185_uc011myi.1_Missense_Mutation_p.A410T|ZNF185_uc011myj.1_Missense_Mutation_p.A380T|ZNF185_uc011myk.1_Missense_Mutation_p.A440T|ZNF185_uc004fgw.3_Missense_Mutation_p.A218T|ZNF185_uc004fgu.2_Missense_Mutation_p.A68T|ZNF185_uc004fgv.2_Missense_Mutation_p.A136T|ZNF185_uc004fgx.2_Missense_Mutation_p.A77T	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	439						cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGCTGTACCCGCTCAGCAACC	0.627000													5	5					0	0	1	0	0	
ATP2B3	492	broad.mit.edu	37	X	152815582	152815582	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:152815582T>C	uc004fht.1	+	10	1787	c.1661T>C	c.(1660-1662)CTG>CCG	p.L554P	ATP2B3_uc004fhs.1_Missense_Mutation_p.L554P	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	554	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GTCTTGGACCTGAAGCGGGAC	0.597000													9	35					0	0	1	0	0	
PLXNB3	5365	broad.mit.edu	37	X	153039725	153039725	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:153039725C>T	uc004fii.2	+	21	3778	c.3604C>T	c.(3604-3606)CGC>TGC	p.R1202C	PLXNB3_uc010nuk.2_Missense_Mutation_p.R1225C|PLXNB3_uc011mzd.1_Missense_Mutation_p.R841C|PLXNB3_uc004fij.1_5'Flank|SRPK3_uc004fik.2_5'Flank	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	1202	IPT/TIG 4.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GACGCTCACGCGCACCCACCT	0.701000													5	3					0	0	1	0	0	
PDZD4	57595	broad.mit.edu	37	X	153069256	153069256	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:153069256C>T	uc004fiz.1	-	8	2112	c.1862G>A	c.(1861-1863)CGC>CAC	p.R621H	PDZD4_uc004fiy.1_Missense_Mutation_p.R546H|PDZD4_uc004fix.2_Missense_Mutation_p.R525H|PDZD4_uc004fja.1_Missense_Mutation_p.R627H|PDZD4_uc011mze.1_Missense_Mutation_p.R512H	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	621						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCACTCCATGCGCGGTGCTTC	0.726000													5	22					0	0	1	0	0	
PDZD4	57595	broad.mit.edu	37	X	153069306	153069306	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:153069306G>A	uc004fiz.1	-	8	2062	c.1812C>T	c.(1810-1812)GCC>GCT	p.A604A	PDZD4_uc004fiy.1_Silent_p.A529A|PDZD4_uc004fix.2_Silent_p.A508A|PDZD4_uc004fja.1_Silent_p.A610A|PDZD4_uc011mze.1_Silent_p.A495A	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	604						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GAGGGCCACCGGCCAAGCTCA	0.736000													6	15					0	0	1	0	0	
L1CAM	3897	broad.mit.edu	37	X	153135051	153135051	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:153135051A>G	uc004fjb.2	-	10	1299	c.1191T>C	c.(1189-1191)AGT>AGC	p.S397S	L1CAM_uc004fjc.2_Silent_p.S397S|L1CAM_uc010nuo.2_Silent_p.S392S|L1CAM_uc004fjd.1_Silent_p.S211S	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	397	Extracellular (Potential).|Ig-like C2-type 4.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCATTGTGTCACTGGGCTGCA	0.607000													8	9					0	0	1	0	0	
HCFC1	3054	broad.mit.edu	37	X	153229698	153229698	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:153229698G>A	uc004fjp.2	-	3	908	c.380C>T	c.(379-381)ACG>ATG	p.T127M		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	127	Kelch 2.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GTTTTTGGGCGTCTTTGCTTT	0.592000													32	97					0	0	1	0	0	
TKTL1	8277	broad.mit.edu	37	X	153541074	153541074	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:153541074A>G	uc004fkg.2	+	6	1000	c.814A>G	c.(814-816)ATC>GTC	p.I272V	TKTL1_uc011mzl.1_Missense_Mutation_p.I266V|TKTL1_uc011mzm.1_Intron|TKTL1_uc004fkh.2_Missense_Mutation_p.I216V	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	272					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGAAGTCAACATCACAGATGT	0.443000													32	51					0	0	1	0	0	
FLNA	2316	broad.mit.edu	37	X	153581382	153581382	+	Silent	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:153581382A>G	uc004fkk.2	-	38	6462	c.6213T>C	c.(6211-6213)GAT>GAC	p.D2071D	FLNA_uc004fki.2_Silent_p.D114D|FLNA_uc011mzn.1_Silent_p.D204D|FLNA_uc010nuu.1_Silent_p.D2063D	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2071	Filamin 19.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CATCGCGGGTATCAATGATAA	0.597000													6	31					0	0	1	0	0	
FAM3A	60343	broad.mit.edu	37	X	153741210	153741210	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:153741210C>T	uc004fls.1	-	2	341	c.64G>A	c.(64-66)GTG>ATG	p.V22M	FAM3A_uc004flt.1_Missense_Mutation_p.R3H|FAM3A_uc011mzp.1_Missense_Mutation_p.V22M|FAM3A_uc004flu.1_Missense_Mutation_p.R3H|FAM3A_uc011mzq.1_Missense_Mutation_p.V22M|FAM3A_uc004flw.1_Missense_Mutation_p.V22M	NM_021806	NP_068578	P98173	FAM3A_HUMAN	family 3, member A protein precursor	22						extracellular region				large_intestine(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ATGCTGACCACGATCCATGTG	0.602000													17	61					0	0	1	0	0	
VBP1	7411	broad.mit.edu	37	X	154464613	154464613	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:154464613A>G	uc004fnc.2	+	5	547	c.488A>G	c.(487-489)GAC>GGC	p.D163G	VBP1_uc004fnd.2_Missense_Mutation_p.D126G	NM_003372	NP_003363	P61758	PFD3_HUMAN	von Hippel-Lindau binding protein 1	163					'de novo' posttranslational protein folding	nucleus|prefoldin complex	unfolded protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GAAGACCTTGACTTTCTTCGA	0.333000													38	92					0	0	1	0	0	
CLIC2	1193	broad.mit.edu	37	X	154528224	154528224	+	Splice_Site	SNP	C	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:154528224C>T	uc004fnf.2	-	3	418	c.168_splice	c.e3-1	p.R56_splice	CLIC2_uc010nvj.1_Splice_Site_p.R74_splice	NM_001289	NP_001280	O15247	CLIC2_HUMAN	chloride intracellular channel 2						signal transduction	chloride channel complex|cytoplasm|nucleus	voltage-gated chloride channel activity			large_intestine(1)|ovary(1)|skin(1)	3	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TTCAGGCTTTCTATGATTATT	0.338000													23	46					0	0	1	0	0	
IL9R	3581	broad.mit.edu	37	X	155232627	155232627	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:155232627T>C	uc004fnv.1	+	2	264	c.85T>C	c.(85-87)TGC>CGC	p.C29R	IL9R_uc010nvn.2_Missense_Mutation_p.C8R|IL9R_uc004fnu.1_Missense_Mutation_p.C76R	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	29					cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GCTCCTGGCCTGCATCTGCAT	0.602000													14	52					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	X	155254985	155254985	+	Silent	SNP	G	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:155254985G>A	uc004fnx.3	+	9	1195	c.741G>A	c.(739-741)GTG>GTA	p.V247V		NM_182905	NP_878908			WAS protein family homolog 1																		TCCCTCCTGTGCCCCCACCGC	0.647000													5	21					0	0	1	0	0	
MXRA8	54587	broad.mit.edu	37	1	1290110	1290110	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:1290110delG	uc001aew.2	-	5	932	c.901delC	c.(901-903)CGGfs	p.R301fs	MXRA8_uc001aex.3_Frame_Shift_Del_p.R301fs|MXRA8_uc001aey.3_Frame_Shift_Del_p.R301fs|MXRA8_uc010nyl.1_Frame_Shift_Del_p.R301fs|MXRA8_uc001aez.2_Frame_Shift_Del_p.R200fs|MXRA8_uc001afa.2_Frame_Shift_Del_p.R292fs	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor	301	Extracellular (Potential).					integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GGAGAGCCCCGGGGGGGCGGC	0.741													4	8	---	---	---	---						.
ARID1A	8289	broad.mit.edu	37	1	27106804	27106804	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:27106804delC	uc001bmv.1	+	20	6788	c.6415delC	c.(6415-6417)CCCfs	p.P2139fs	ARID1A_uc001bmu.1_Frame_Shift_Del_p.P1922fs|ARID1A_uc001bmx.1_Frame_Shift_Del_p.P985fs|ARID1A_uc009vsm.1_Frame_Shift_Del_p.P467fs|ARID1A_uc009vsn.1_Frame_Shift_Del_p.P381fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	2139					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding	p.F2141fs*59(1)		ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TCTGGCCACACCCCCCTTCAG	0.587			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								40	90	---	---	---	---						.
SLC2A1	6513	broad.mit.edu	37	1	43392779	43392779	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:43392779delC	uc001cik.2	-	10	1937	c.1412delG	c.(1411-1413)GGAfs	p.G471fs		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	471	Cytoplasmic (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	TTGGCTGGCTCCCCCCTGCCG	0.587													23	48	---	---	---	---						.
NTNG1	22854	broad.mit.edu	37	1	107950324	107950325	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:107950324_107950325insT	uc001dvh.3	+	5	1799_1800	c.1081_1082insT	c.(1081-1083)ATTfs	p.I361fs	NTNG1_uc001dvf.3_Frame_Shift_Ins_p.I361fs|NTNG1_uc010out.1_Frame_Shift_Ins_p.I361fs|NTNG1_uc001dvc.3_Frame_Shift_Ins_p.I361fs|NTNG1_uc001dvi.2_5'UTR|NTNG1_uc001dve.2_RNA|NTNG1_uc009wek.2_RNA|NTNG1_uc001dvg.2_RNA|NTNG1_uc009wem.2_Intron|NTNG1_uc001dvd.1_Frame_Shift_Ins_p.I361fs	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	361					axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		TATTTCCAGTATTGGTAGTAAG	0.317													30	59	---	---	---	---						.
ECM1	1893	broad.mit.edu	37	1	150484010	150484010	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:150484010delG	uc001eus.2	+	7	985	c.786delG	c.(784-786)CAGfs	p.Q262fs	ECM1_uc010pce.1_3'UTR|ECM1_uc010pcf.1_3'UTR|ECM1_uc001eut.2_Intron|ECM1_uc001euu.2_Frame_Shift_Del_p.Q291fs|ECM1_uc001euv.2_Frame_Shift_Del_p.Q289fs|ECM1_uc009wlu.2_Frame_Shift_Del_p.Q22fs	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	262	2 X approximate repeats.|1.				angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GCACGCGGCAGGGGGAGGCTC	0.627													21	45	---	---	---	---						.
HORMAD1	84072	broad.mit.edu	37	1	150676776	150676776	+	Frame_Shift_Del	DEL	T	-	-	rs45439605		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:150676776delT	uc001evk.1	-	11	954	c.848delA	c.(847-849)AACfs	p.N283fs	HORMAD1_uc001evl.1_Frame_Shift_Del_p.N276fs|HORMAD1_uc001evm.1_Frame_Shift_Del_p.N203fs	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	283					blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			AGATGCAGGGTTTTTTTCCTG	0.289													11	13	---	---	---	---						.
KCNN3	3782	broad.mit.edu	37	1	154842200	154842202	+	In_Frame_Del	DEL	GCT	-	-	rs56352724		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:154842200_154842202delGCT	uc001ffp.2	-	1	553_555	c.239_241delAGC	c.(238-243)CAGCCA>CCA	p.Q80del	KCNN3_uc009wox.1_In_Frame_Del_p.Q80del	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	80	Poly-Gln.					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GGATGCGGTGgctgctgctgctg	0.340													2	4	---	---	---	---						.
CASQ1	844	broad.mit.edu	37	1	160168836	160168837	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:160168836_160168837insC	uc010pja.1	+	9	1234_1235	c.977_978insC	c.(976-978)TTCfs	p.F326fs		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	326						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCTGATGACTTCCCCCTGGTAA	0.505													23	51	---	---	---	---						.
CEP350	9857	broad.mit.edu	37	1	180063462	180063462	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:180063462delA	uc001gnt.2	+	34	8605	c.8222delA	c.(8221-8223)GAAfs	p.E2741fs	CEP350_uc009wxl.2_Frame_Shift_Del_p.E2740fs|CEP350_uc001gnv.2_Frame_Shift_Del_p.E876fs|CEP350_uc001gnw.1_Frame_Shift_Del_p.E498fs|CEP350_uc001gnx.1_Frame_Shift_Del_p.E498fs	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2741	Potential.					centrosome|nucleus|spindle				ovary(4)	4						CTAAATGAGGAAAAAAAGTCA	0.353													13	30	---	---	---	---						.
C1orf21	81563	broad.mit.edu	37	1	184567582	184567582	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:184567582delA	uc001gqv.1	+	5	791	c.314delA	c.(313-315)GAAfs	p.E105fs		NM_030806	NP_110433	Q9H246	CA021_HUMAN	chromosome 1 open reading frame 21	105											0		Breast(1374;0.00262)		Colorectal(1306;4.8e-08)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)		ATGCTGGATGAAAAAATTGAA	0.343													12	27	---	---	---	---						.
CACNA1S	779	broad.mit.edu	37	1	201012597	201012597	+	Frame_Shift_Del	DEL	G	-	-	rs41267497	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:201012597delG	uc001gvv.2	-	40	5087	c.4860delC	c.(4858-4860)CCCfs	p.P1620fs		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1620	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGCCATGACGGGGGGCAGGG	0.572											OREG0014067	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	32	---	---	---	---						.
PPP1R12B	4660	broad.mit.edu	37	1	202462365	202462365	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:202462365delG	uc001gya.1	+	15	2209	c.2065delG	c.(2065-2067)GAGfs	p.E689fs	PPP1R12B_uc001gxz.1_Frame_Shift_Del_p.E689fs|PPP1R12B_uc001gyb.1_5'UTR|PPP1R12B_uc001gyc.1_5'UTR	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	689					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			GGGGAGCCCTGAGAAGCATGA	0.597													21	32	---	---	---	---						.
FAM177B	400823	broad.mit.edu	37	1	222919894	222919895	+	Frame_Shift_Del	DEL	AT	-	-	rs2378607	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:222919894_222919895delAT	uc001hnt.2	+	3	273_274	c.7_8delAT	c.(7-9)ATTfs	p.I3fs	uc001hnr.1_Intron|FAM177B_uc009xeb.2_RNA	NM_207468	NP_997351	A6PVY3	F177B_HUMAN	hypothetical protein LOC400823	3										ovary(1)	1						CATTATGGAGATTGACGGTTTC	0.376													19	32	---	---	---	---						.
WDR64	128025	broad.mit.edu	37	1	241850767	241850767	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr1:241850767delA	uc001hze.1	+	7	1021	c.814delA	c.(814-816)AAAfs	p.K272fs	WDR64_uc001hzf.1_5'UTR			B1ANS9	WDR64_HUMAN	RecName: Full=WD repeat-containing protein 64;	272										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			CCCCAGTGTTAAAAGGAAGCT	0.328													18	31	---	---	---	---						.
CNNM2	54805	broad.mit.edu	37	10	104678873	104678874	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:104678873_104678874insG	uc001kwm.2	+	1	760_761	c.636_637insG	c.(634-639)GTCGGGfs	p.V212fs	CNNM2_uc001kwn.2_Frame_Shift_Ins_p.V212fs|CNNM2_uc001kwl.2_Frame_Shift_Ins_p.V212fs	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	212_213					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		GTGGCGCCGTCGGGGGCAAGGG	0.703													17	26	---	---	---	---						.
C10orf137	26098	broad.mit.edu	37	10	127412385	127412385	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:127412385delA	uc001liq.1	+	4	683	c.390delA	c.(388-390)ATAfs	p.I130fs	C10orf137_uc001lin.2_Frame_Shift_Del_p.I130fs|C10orf137_uc001lio.1_Frame_Shift_Del_p.I130fs|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				TTAAGAACATAAAAAAACTCC	0.323													39	57	---	---	---	---						.
UROS	7390	broad.mit.edu	37	10	127483544	127483544	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr10:127483544delC	uc001liw.3	-	8	698	c.565delG	c.(565-567)GTTfs	p.V189fs	UROS_uc001liv.3_Frame_Shift_Del_p.V70fs|UROS_uc010quh.1_RNA|UROS_uc001lix.3_Frame_Shift_Del_p.V189fs|UROS_uc001liy.3_RNA	NM_000375	NP_000366	P10746	HEM4_HUMAN	uroporphyrinogen III synthase	189					heme biosynthetic process|uroporphyrinogen III biosynthetic process	cytosol|mitochondrion	uroporphyrinogen-III synthase activity				0		all_lung(145;0.00756)|Lung NSC(174;0.0116)|Colorectal(57;0.0855)|all_neural(114;0.0937)|Breast(234;0.203)				CTGGCTGGAACCCCCTGTGGG	0.483													15	34	---	---	---	---						.
CCDC73	493860	broad.mit.edu	37	11	32637520	32637520	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:32637520delT	uc001mtv.2	-	15	1385	c.1341delA	c.(1339-1341)AAAfs	p.K447fs	CCDC73_uc001mtw.1_Frame_Shift_Del_p.K437fs	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	447										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					ATGAGCCTTCTTTTTTTTCTT	0.209													10	21	---	---	---	---						.
CSTF3	1479	broad.mit.edu	37	11	33129474	33129474	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:33129474delT	uc001muh.2	-	5	497	c.331delA	c.(331-333)ACCfs	p.T111fs		NM_001326	NP_001317	Q12996	CSTF3_HUMAN	cleavage stimulation factor subunit 3 isoform 1	111					mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding				0						TTACCCTTGGTTTCTCGGACA	0.358													23	37	---	---	---	---						.
OSBP	5007	broad.mit.edu	37	11	59376060	59376061	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:59376060_59376061delCT	uc001noc.1	-	3	1198_1199	c.718_719delAG	c.(718-720)AGTfs	p.S240fs		NM_002556	NP_002547	P22059	OSBP1_HUMAN	oxysterol binding protein	240					lipid transport	Golgi membrane	oxysterol binding			large_intestine(1)	1		all_epithelial(135;0.000236)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		CTCCAGCTCACTGAGAGAACGC	0.495													41	94	---	---	---	---						.
SLC22A10	387775	broad.mit.edu	37	11	63070011	63070012	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:63070011_63070012insA	uc009yor.2	+	7	1489_1490	c.1281_1282insA	c.(1279-1284)CCCAAAfs	p.P427fs	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_Intron|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	427_428	Cytoplasmic (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CGTTTGTGCCCAAAGGTGAGAG	0.436													23	41	---	---	---	---						.
C11orf2	738	broad.mit.edu	37	11	64875686	64875686	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:64875686delC	uc001ocr.1	+	5	783	c.743delC	c.(742-744)GCCfs	p.A248fs	C11orf2_uc001ocs.1_Frame_Shift_Del_p.A124fs	NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	248					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						GGCTCAGGCGCCCCGGAGCAG	0.721													2	4	---	---	---	---						.
MALAT1	378938	broad.mit.edu	37	11	65269498	65269498	+	RNA	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:65269498delT	uc010roh.1	+	1		c.4266delT			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						AATGATTTAGTTTTTTTCCCC	0.383													12	26	---	---	---	---						.
FIBP	9158	broad.mit.edu	37	11	65653050	65653051	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:65653050_65653051delAA	uc001ogd.2	-	5	717_718	c.596_597delTT	c.(595-597)TTTfs	p.F199fs	FIBP_uc009yqu.2_Frame_Shift_Del_p.F196fs|FIBP_uc001oge.2_Frame_Shift_Del_p.F199fs	NM_198897	NP_942600	O43427	FIBP_HUMAN	FGF intracellular binding protein isoform a	199					fibroblast growth factor receptor signaling pathway	endomembrane system|membrane|microsome|mitochondrion|nucleus	fibroblast growth factor binding			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.166)		CGCAGAAGGCAAAGTCACCGAA	0.564											OREG0021089	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	81	---	---	---	---						.
ATM	472	broad.mit.edu	37	11	108160451	108160451	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:108160451delA	uc001pkb.1	+	29	4744	c.4359delA	c.(4357-4359)ATAfs	p.I1453fs	ATM_uc009yxr.1_Frame_Shift_Del_p.I1453fs|ATM_uc001pkd.3_Frame_Shift_Del_p.I105fs|ATM_uc001pke.1_Frame_Shift_Del_p.I105fs|ATM_uc010rvw.1_Frame_Shift_Del_p.I105fs|ATM_uc001pkf.2_Frame_Shift_Del_p.I105fs	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	1453					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TGAAAGATATAAAAAGTGGCT	0.318			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			42	55	---	---	---	---						.
MFRP	83552	broad.mit.edu	37	11	119215690	119215690	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr11:119215690delG	uc001pwj.2	-	6	826	c.666delC	c.(664-666)CCCfs	p.P222fs	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Frame_Shift_Del_p.P222fs	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	118	C1q.					collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		TGTTGAGCGTGGGGGGAGGCA	0.612													6	8	---	---	---	---						.
DUSP16	80824	broad.mit.edu	37	12	12672854	12672854	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:12672854delA	uc001rao.1	-	3	941	c.309delT	c.(307-309)TTTfs	p.F103fs	DUSP16_uc001ran.1_Frame_Shift_Del_p.F10fs	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	103	Rhodanese.				inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		GTACAGTGAGAAAACAGTCTG	0.443													43	45	---	---	---	---						.
GUCY2C	2984	broad.mit.edu	37	12	14778829	14778829	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:14778829delT	uc001rcd.2	-	21	2407	c.2270delA	c.(2269-2271)AATfs	p.N757fs		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	757	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						ATAGCTTTCATTTTTTTGGTC	0.279													41	59	---	---	---	---						.
GXYLT1	283464	broad.mit.edu	37	12	42491721	42491722	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:42491721_42491722insA	uc001rms.3	-	6	1203_1204	c.978_979insT	c.(976-981)TTTCATfs	p.F326fs	GXYLT1_uc001rmt.3_Frame_Shift_Ins_p.F295fs	NM_173601	NP_775872	Q4G148	GXLT1_HUMAN	glycosyltransferase 8 domain containing 3	326_327	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						CCTGGATTATGAAAAAACACGA	0.297													24	52	---	---	---	---						.
SFRS2IP	9169	broad.mit.edu	37	12	46320657	46320658	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:46320657_46320658insG	uc001rox.2	-	11	3113_3114	c.2826_2827insC	c.(2824-2829)CCCTCAfs	p.P942fs	SFRS2IP_uc001row.2_Frame_Shift_Ins_p.P627fs|SFRS2IP_uc001roy.1_Frame_Shift_Ins_p.P1016fs	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	942_943	Arg-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		CTACATCTTGAGGGGGACCTAG	0.465													64	145	---	---	---	---						.
MIR1228	100302201	broad.mit.edu	37	12	57588352	57588352	+	RNA	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:57588352delC	hsa-mir-1228|MI0006318	+			c.66delC			LRP1_uc001snd.2_Intron																	0						ACCTGCCTCGCCCCCCAGGTG	0.647													22	46	---	---	---	---						.
NUP107	57122	broad.mit.edu	37	12	69126428	69126428	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:69126428delA	uc001suf.2	+	23	2125	c.2010delA	c.(2008-2010)TTAfs	p.L670fs	NUP107_uc001sug.2_Frame_Shift_Del_p.L429fs|NUP107_uc010stj.1_Frame_Shift_Del_p.L641fs	NM_020401	NP_065134	P57740	NU107_HUMAN	nucleoporin 107kDa	670					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			skin(1)	1	Breast(13;6.25e-06)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)			AGGATCGTTTAAAAATTGATG	0.318													13	29	---	---	---	---						.
ZFC3H1	196441	broad.mit.edu	37	12	72038781	72038781	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:72038781delT	uc001swo.2	-	4	1514	c.1155delA	c.(1153-1155)AAAfs	p.K385fs		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	385	Potential.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						TTTGTTGCCATTTTTTACTGG	0.348													15	29	---	---	---	---						.
CEP290	80184	broad.mit.edu	37	12	88453675	88453675	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:88453675delT	uc001tar.2	-	48	6989	c.6645delA	c.(6643-6645)AAAfs	p.K2215fs	CEP290_uc001taq.2_Frame_Shift_Del_p.K1275fs	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	2215	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						AAAGTCATACTTTTTTAAGTT	0.333													5	6	---	---	---	---						.
C12orf12	196477	broad.mit.edu	37	12	91347369	91347369	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:91347369delA	uc001tbj.2	-	1	1585	c.1151delT	c.(1150-1152)TTAfs	p.L384fs		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	384										central_nervous_system(1)|pancreas(1)	2						CTCTGGGTTTAAAAAAGTGCA	0.423													29	58	---	---	---	---						.
ELK3	2004	broad.mit.edu	37	12	96641028	96641029	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:96641028_96641029insC	uc001teo.1	+	3	797_798	c.518_519insC	c.(517-519)AGCfs	p.S173fs		NM_005230	NP_005221	P41970	ELK3_HUMAN	ELK3 protein	173					negative regulation of transcription, DNA-dependent|signal transduction	mitochondrion	protein binding|purine-rich negative regulatory element binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	all_cancers(2;0.00173)					CCCGAAGACAGCCCCCCCGTGG	0.579													21	26	---	---	---	---						.
ANKS1B	56899	broad.mit.edu	37	12	99446957	99446958	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:99446957_99446958insT	uc001tge.1	-	17	3172_3173	c.2755_2756insA	c.(2755-2757)ATCfs	p.I919fs	ANKS1B_uc001tgf.1_Frame_Shift_Ins_p.I495fs|ANKS1B_uc001tgk.2_Frame_Shift_Ins_p.I216fs|ANKS1B_uc001tgd.1_Frame_Shift_Ins_p.I145fs|ANKS1B_uc001tgi.2_Frame_Shift_Ins_p.I145fs|ANKS1B_uc009ztr.2_Frame_Shift_Ins_p.I145fs|ANKS1B_uc001tgj.2_Frame_Shift_Ins_p.I145fs|ANKS1B_uc001tgg.3_Frame_Shift_Ins_p.I88fs|ANKS1B_uc010svg.1_Frame_Shift_Ins_p.I114fs|ANKS1B_uc009zts.1_Frame_Shift_Ins_p.I145fs|ANKS1B_uc001tgm.1_Frame_Shift_Ins_p.I145fs	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	919	SAM 2.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		AACCTCCCAGATTTTTTTCAAC	0.371													8	14	---	---	---	---						.
MVK	4598	broad.mit.edu	37	12	110019240	110019240	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:110019240delC	uc001toy.3	+	5	596	c.412delC	c.(412-414)CCCfs	p.P138fs	MVK_uc009zvk.2_Frame_Shift_Del_p.P138fs|MVK_uc010sxr.1_Intron|MVK_uc001toz.3_Intron|MVK_uc001tpc.3_RNA	NM_001114185	NP_001107657	Q03426	KIME_HUMAN	mevalonate kinase	138	ATP (By similarity).				cholesterol biosynthetic process|isoprenoid biosynthetic process	cytosol|peroxisome	ATP binding|identical protein binding|mevalonate kinase activity				0						GTCGGAGCTGCCCCCCGGGGC	0.667													17	35	---	---	---	---						.
KDM2B	84678	broad.mit.edu	37	12	121880228	121880228	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr12:121880228delG	uc001uat.2	-	19	3120	c.3016delC	c.(3016-3018)CGGfs	p.R1006fs	KDM2B_uc001uaq.2_Frame_Shift_Del_p.R446fs|KDM2B_uc010szy.1_Frame_Shift_Del_p.R446fs|KDM2B_uc001uar.2_Frame_Shift_Del_p.R597fs|KDM2B_uc001uas.2_Frame_Shift_Del_p.R937fs|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Frame_Shift_Del_p.R254fs|KDM2B_uc010szx.1_Frame_Shift_Del_p.R254fs|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1006					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						CGCAGCTCCCGGGGGGTGCCG	0.721													7	10	---	---	---	---						.
NBEA	26960	broad.mit.edu	37	13	35736024	35736025	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr13:35736024_35736025insT	uc001uvb.2	+	24	4205_4206	c.3999_4000insT	c.(3997-4002)GAGTTTfs	p.E1333fs	NBEA_uc010abi.2_Frame_Shift_Ins_p.E24fs	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1333_1334	WD 1.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GTATTCCTGAGTTTAAATGGTC	0.411													3	4	---	---	---	---						.
INSM2	84684	broad.mit.edu	37	14	36005056	36005057	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:36005056_36005057insT	uc001wth.1	+	1	1809_1810	c.1598_1599insT	c.(1597-1599)ACTfs	p.T533fs		NM_032594	NP_115983	Q96T92	INSM2_HUMAN	insulinoma-associated protein IA-6	533	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			lung(1)|skin(1)	2	Breast(36;0.122)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(9;2.16e-07)|Lung(238;2.63e-07)|Epithelial(34;0.00145)|all cancers(34;0.00452)	GBM - Glioblastoma multiforme(112;0.0223)		TGCCCGTCCACTTTTTTTAGCT	0.629													20	35	---	---	---	---						.
SIPA1L1	26037	broad.mit.edu	37	14	72165808	72165809	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:72165808_72165809insG	uc001xms.2	+	11	3833_3834	c.3485_3486insG	c.(3484-3486)GTGfs	p.V1162fs	SIPA1L1_uc001xmt.2_Frame_Shift_Ins_p.V1162fs|SIPA1L1_uc001xmu.2_Frame_Shift_Ins_p.V1162fs|SIPA1L1_uc001xmv.2_Frame_Shift_Ins_p.V1162fs|SIPA1L1_uc010ttm.1_Frame_Shift_Ins_p.V637fs	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1162					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ACTGGTTCTGTGGGGGGCACTT	0.495													29	34	---	---	---	---						.
C14orf45	80127	broad.mit.edu	37	14	74516522	74516523	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr14:74516522_74516523delAA	uc010tup.1	+	8	1033_1034	c.910_911delAA	c.(910-912)AAAfs	p.K304fs	C14orf45_uc001xpm.1_RNA	NM_025057	NP_079333	Q8ND07	CN045_HUMAN	hypothetical protein LOC80127	304	Potential.										0				BRCA - Breast invasive adenocarcinoma(234;0.00351)		TTACATGACCAAAGAGTTTGAG	0.421													31	35	---	---	---	---						.
MGA	23269	broad.mit.edu	37	15	42021442	42021442	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:42021442delA	uc010ucy.1	+	11	3919	c.3738delA	c.(3736-3738)CGAfs	p.R1246fs	MGA_uc010ucz.1_Frame_Shift_Del_p.R1246fs	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1246						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TATATGAGCGAAAAAAAGAGG	0.413													13	23	---	---	---	---						.
GANC	2595	broad.mit.edu	37	15	42632112	42632113	+	Splice_Site	INS	-	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:42632112_42632113insA	uc001zpi.2	+	17	2401	c.2087_splice	c.e17+2	p.R696_splice		NM_198141	NP_937784	Q8TET4	GANC_HUMAN	glucosidase, alpha; neutral C						carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity			central_nervous_system(2)	2		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		TGTCATGAGGTAAAAAAGCTTC	0.450													24	55	---	---	---	---						.
FRMD5	84978	broad.mit.edu	37	15	44166366	44166366	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:44166366delC	uc001ztl.2	-	14	1607	c.1430delG	c.(1429-1431)GGAfs	p.G477fs	FRMD5_uc001ztj.1_Frame_Shift_Del_p.G150fs|FRMD5_uc001ztk.1_Frame_Shift_Del_p.G383fs|FRMD5_uc010uef.1_Frame_Shift_Del_p.G150fs|FRMD5_uc001ztm.2_Frame_Shift_Del_p.G150fs|FRMD5_uc001ztn.2_Frame_Shift_Del_p.G243fs	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	477						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		CCTCAGCTCTCCCCCAAGGGC	0.577													34	74	---	---	---	---						.
MAN2C1	4123	broad.mit.edu	37	15	75651973	75651973	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:75651973delC	uc002baf.2	-	16	1953	c.1936delG	c.(1936-1938)GCCfs	p.A646fs	MAN2C1_uc002bag.2_Frame_Shift_Del_p.A646fs|MAN2C1_uc002bah.2_Frame_Shift_Del_p.A646fs|MAN2C1_uc010bkk.2_Frame_Shift_Del_p.A547fs|MAN2C1_uc010umi.1_Frame_Shift_Del_p.A428fs	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	646					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						AGGCTGTGGGCCCCGCCCGGT	0.642													17	28	---	---	---	---						.
ADAMTS7	11173	broad.mit.edu	37	15	79063618	79063618	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr15:79063618delC	uc002bej.3	-	16	2615	c.2404delG	c.(2404-2406)GTGfs	p.V802fs	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	802	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TCGTAGTGCACCCCAGGGTTG	0.637													9	19	---	---	---	---						.
RBBP6	5930	broad.mit.edu	37	16	24582804	24582804	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:24582804delA	uc002dmh.2	+	18	5457	c.4417delA	c.(4417-4419)AAAfs	p.K1473fs	RBBP6_uc002dmi.2_Frame_Shift_Del_p.K1439fs|RBBP6_uc010bxr.2_Frame_Shift_Del_p.K633fs|RBBP6_uc002dmk.2_Frame_Shift_Del_p.K1306fs	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1473	Interaction with p53 (By similarity).				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		CAATAGAGACAAAAAAACTGA	0.368													21	47	---	---	---	---						.
PRSS36	146547	broad.mit.edu	37	16	31151942	31151942	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:31151942delG	uc002ebd.2	-	13	2097	c.2038delC	c.(2038-2040)CTGfs	p.L680fs	PRSS36_uc010vff.1_Frame_Shift_Del_p.L455fs|PRSS36_uc010vfg.1_Frame_Shift_Del_p.L675fs|PRSS36_uc010vfh.1_Intron	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	680	Peptidase S1 3.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						AGGAGGGCCAGGGGGGGCCTG	0.726													7	16	---	---	---	---						.
MT1DP	326343	broad.mit.edu	37	16	56678767	56678767	+	RNA	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:56678767delT	uc010cci.2	+	3		c.278delT			MT1DP_uc010vhf.1_RNA	NR_027781				Homo sapiens MTM (MTM) mRNA, complete cds.												0						ACAAATCTAGTTTTTTTTTAA	0.413													9	12	---	---	---	---						.
DHX38	9785	broad.mit.edu	37	16	72137666	72137666	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:72137666delG	uc002fcb.2	+	13	2158	c.1803delG	c.(1801-1803)ATGfs	p.M601fs	DHX38_uc010vmp.1_Intron	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	601	Helicase ATP-binding.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				GTGAAGAGATGGGGGGAAACC	0.547													12	26	---	---	---	---						.
ANKRD11	29123	broad.mit.edu	37	16	89349686	89349688	+	In_Frame_Del	DEL	CTC	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr16:89349686_89349688delCTC	uc002fmx.1	-	9	3723_3725	c.3262_3264delGAG	c.(3262-3264)GAGdel	p.E1088del	ANKRD11_uc002fmy.1_In_Frame_Del_p.E1088del|ANKRD11_uc002fnc.1_In_Frame_Del_p.E1088del|ANKRD11_uc002fnb.1_In_Frame_Del_p.E1045del	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1088	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GGAAAGCCTTCTCCTTCTTCTCT	0.399													53	121	---	---	---	---						.
RTN4RL1	146760	broad.mit.edu	37	17	1840323	1840324	+	Frame_Shift_Ins	INS	-	GC	GC			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:1840323_1840324insGC	uc002ftp.2	-	2	811_812	c.792_793insGC	c.(790-795)CGCTCCfs	p.R264fs		NM_178568	NP_848663	Q86UN2	R4RL1_HUMAN	reticulon 4 receptor-like 1 precursor	264_265	LRRCT.				axon regeneration	anchored to plasma membrane	receptor activity				0						TCCCACAGGGAGCGCGCGCGAC	0.703													6	4	---	---	---	---						.
KIF1C	10749	broad.mit.edu	37	17	4923869	4923869	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:4923869delC	uc002gan.1	+	20	2159	c.1833delC	c.(1831-1833)GTCfs	p.V611fs		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	611					microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						AACGAGGGGTCCCCCCACCCC	0.587													36	25	---	---	---	---						.
PLSCR3	57048	broad.mit.edu	37	17	7296968	7296968	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:7296968delG	uc002ggm.1	-	3	404	c.195delC	c.(193-195)CCCfs	p.P65fs	PLSCR3_uc002ggl.2_Frame_Shift_Del_p.P65fs|PLSCR3_uc002ggq.1_5'UTR|PLSCR3_uc002ggn.1_Frame_Shift_Del_p.P65fs|PLSCR3_uc002ggo.1_Frame_Shift_Del_p.P65fs|PLSCR3_uc002ggp.1_5'UTR|PLSCR3_uc002ggr.1_Frame_Shift_Del_p.P65fs|PLSCR3_uc010cmg.1_Frame_Shift_Del_p.P65fs	NM_020360	NP_065093	Q9NRY6	PLS3_HUMAN	phospholipid scramblase 3	65	Cytoplasmic (By similarity).|SH3-binding 3 (Potential).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|calcium-dependent protein binding|phospholipid scramblase activity|SH3 domain binding				0		Prostate(122;0.173)				GTGGCAAGAAGGGGGCAGCAG	0.706													12	26	---	---	---	---						.
FXR2	9513	broad.mit.edu	37	17	7517825	7517826	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:7517825_7517826insC	uc002gia.1	-	1	252_253	c.25_26insG	c.(25-27)GATfs	p.D9fs	FXR2_uc010vud.1_Frame_Shift_Ins_p.D9fs|SHBG_uc010cmo.2_Intron|SHBG_uc010cmp.2_Intron|SHBG_uc010cmq.2_Intron|SHBG_uc010cmr.2_Intron|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Intron|SHBG_uc010cmu.2_Intron	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	9						cytosolic large ribosomal subunit	protein binding|RNA binding	p.?(1)			0				READ - Rectum adenocarcinoma(115;0.17)		CGGCTCCACATCCCCCCCAGAG	0.767													3	6	---	---	---	---						.
EFNB3	1949	broad.mit.edu	37	17	7612702	7612702	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:7612702delG	uc002gis.2	+	5	1228	c.831delG	c.(829-831)CTGfs	p.L277fs		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	277	Cytoplasmic (Potential).				cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				CTCTGGGCCTGGGGGGTGGAG	0.711													21	7	---	---	---	---						.
ALDH3A1	218	broad.mit.edu	37	17	19641649	19641649	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:19641649delG	uc010cqu.2	-	9	1664	c.1334delC	c.(1333-1335)CCGfs	p.P445fs	ALDH3A1_uc010vzd.1_Frame_Shift_Del_p.P445fs|ALDH3A1_uc002gwj.2_Frame_Shift_Del_p.P445fs|ALDH3A1_uc010cqv.2_Frame_Shift_Del_p.P444fs|ALDH3A1_uc002gwk.2_Frame_Shift_Del_p.P562fs|ALDH3A1_uc002gwl.1_Frame_Shift_Del_p.P372fs	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	445					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	GGCCGGGCTCGGGGGGTATCT	0.627													46	38	---	---	---	---						.
IFT20	90410	broad.mit.edu	37	17	26657489	26657491	+	In_Frame_Del	DEL	CTT	-	-	rs148686581	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:26657489_26657491delCTT	uc002haw.1	-	3	323_325	c.191_193delAAG	c.(190-195)GAAGCA>GCA	p.E64del	IFT20_uc002hau.1_In_Frame_Del_p.E64del|IFT20_uc002hav.1_In_Frame_Del_p.E90del|IFT20_uc010wae.1_In_Frame_Del_p.E90del|TNFAIP1_uc002hax.1_5'Flank			Q8IY31	IFT20_HUMAN	RecName: Full=Intraflagellar transport protein 20 homolog;          Short=hIFT20;	64					cell projection organization	centriole|cilium|Golgi apparatus|microtubule basal body	protein binding				0	all_lung(13;0.000294)|Lung NSC(42;0.000964)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		TCATTTTCTGCTTCTTTTGCAAG	0.379													22	50	---	---	---	---						.
KIAA0100	9703	broad.mit.edu	37	17	26943932	26943932	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:26943932delC	uc002hbu.2	-	34	6095	c.5996delG	c.(5995-5997)GGTfs	p.G1999fs	SGK494_uc010waq.1_5'Flank|SGK494_uc010war.1_5'Flank|SGK494_uc002hbr.1_5'Flank|uc002hbs.1_RNA|KIAA0100_uc002hbt.2_Frame_Shift_Del_p.G328fs	NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	1999						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					AACAGAGATACCCCCAACAGG	0.532													15	26	---	---	---	---						.
MED1	5469	broad.mit.edu	37	17	37564099	37564099	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:37564099delG	uc002hrv.3	-	17	4587	c.4375delC	c.(4375-4377)CAGfs	p.Q1459fs	MED1_uc010wee.1_Frame_Shift_Del_p.Q1287fs|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1459	Ser-rich.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		TCCAGATTCTGGGGGGTATAT	0.488										HNSCC(31;0.082)			22	44	---	---	---	---						.
PPP1R1B	84152	broad.mit.edu	37	17	37785805	37785805	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:37785805delC	uc002hrz.2	+	3	622	c.155delC	c.(154-156)TCCfs	p.S52fs	PPP1R1B_uc002hsa.2_Frame_Shift_Del_p.S52fs|PPP1R1B_uc010cvx.2_Intron|PPP1R1B_uc002hsb.2_Frame_Shift_Del_p.S16fs|PPP1R1B_uc002hsc.2_Frame_Shift_Del_p.S16fs	NM_032192	NP_115568	Q9UD71	PPR1B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	52					signal transduction	cytosol	protein kinase inhibitor activity|protein phosphatase inhibitor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GAGGAAGCCTCCCCCCACCAG	0.582													13	28	---	---	---	---						.
HOXB1	3211	broad.mit.edu	37	17	46607839	46607839	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:46607839delG	uc002ink.1	-	1	434	c.428delC	c.(427-429)CCTfs	p.P143fs		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	143						nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTTCCCATAAGGGGGATGCTG	0.617													26	33	---	---	---	---						.
AXIN2	8313	broad.mit.edu	37	17	63532585	63532585	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr17:63532585delC	uc002jfi.2	-	8	2283	c.1994delG	c.(1993-1995)GGCfs	p.G665fs	AXIN2_uc002jfh.2_Frame_Shift_Del_p.G600fs	NM_004655	NP_004646	Q9Y2T1	AXIN2_HUMAN	axin 2	665					cellular protein localization|cellular response to organic cyclic compound|dorsal/ventral axis specification|intramembranous ossification|maintenance of DNA repeat elements|mRNA stabilization|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of cell proliferation|negative regulation of osteoblast differentiation|odontogenesis|positive regulation of cell death|positive regulation of epithelial to mesenchymal transition|positive regulation of protein phosphorylation|regulation of centromeric sister chromatid cohesion|regulation of mismatch repair|Wnt receptor signaling pathway involved in somitogenesis	Axin-APC-beta-catenin-GSK3B complex|cell cortex|centrosome|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|nucleus|plasma membrane|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			central_nervous_system(1)|skin(1)	2						CCCGCTGTTGCCCCCCCACAG	0.657									Oligodontia_Ectodermal_Dysplasia_and_Colorectal_Polyp_syndrome				16	31	---	---	---	---						.
ANKRD12	23253	broad.mit.edu	37	18	9254818	9254819	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:9254818_9254819insG	uc002knv.2	+	9	1810_1811	c.1553_1554insG	c.(1552-1554)GAGfs	p.E518fs	ANKRD12_uc002knw.2_Frame_Shift_Ins_p.E495fs|ANKRD12_uc002knx.2_Frame_Shift_Ins_p.E495fs|ANKRD12_uc010dkx.1_Frame_Shift_Ins_p.E225fs	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	518						nucleus				ovary(2)|central_nervous_system(1)	3						ACCAGAGAGGAGGGGAACTTTA	0.267													24	44	---	---	---	---						.
C18orf34	374864	broad.mit.edu	37	18	30847010	30847010	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:30847010delT	uc002kxn.2	-	13	1421	c.1279delA	c.(1279-1281)ACAfs	p.T427fs	C18orf34_uc010dme.1_5'UTR|C18orf34_uc010xbr.1_Frame_Shift_Del_p.T427fs|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Frame_Shift_Del_p.T427fs|C18orf34_uc002kxp.2_Frame_Shift_Del_p.T427fs	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	427										ovary(1)	1						ATATCCCATGTTTTTTTCTTT	0.269													16	16	---	---	---	---						.
C18orf34	374864	broad.mit.edu	37	18	30873148	30873148	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:30873148delT	uc002kxn.2	-	11	1293	c.1151delA	c.(1150-1152)AATfs	p.N384fs	C18orf34_uc010xbr.1_Frame_Shift_Del_p.N384fs|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Frame_Shift_Del_p.N384fs|C18orf34_uc002kxp.2_Frame_Shift_Del_p.N384fs	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	384	Potential.									ovary(1)	1						ATGTAATTCATTTTTTGATGA	0.259													13	29	---	---	---	---						.
ST8SIA5	29906	broad.mit.edu	37	18	44262012	44262012	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:44262012delG	uc002lcj.1	-	6	1153	c.585delC	c.(583-585)CCCfs	p.P195fs	ST8SIA5_uc002lci.1_Frame_Shift_Del_p.P42fs|ST8SIA5_uc010xcy.1_Frame_Shift_Del_p.P231fs|ST8SIA5_uc010xcz.1_Frame_Shift_Del_p.P164fs	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	195	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						TCTCTGAGATGGGGGGCAGGT	0.572													10	17	---	---	---	---						.
SMAD4	4089	broad.mit.edu	37	18	48575133	48575133	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:48575133delA	uc010xdp.1	+	3	865	c.327delA	c.(325-327)CTAfs	p.L109fs	SMAD4_uc010xdo.1_RNA	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	109	MH1.				BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(4)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		AAAATGAACTAAAACATGTTA	0.373									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				33	57	---	---	---	---						.
SMAD4	4089	broad.mit.edu	37	18	48593495	48593496	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr18:48593495_48593496delAG	uc010xdp.1	+	10	1784_1785	c.1246_1247delAG	c.(1246-1248)AGAfs	p.R416fs	SMAD4_uc002lfb.3_Frame_Shift_Del_p.R261fs	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	416	MH2.			R->S: No effect on heterotrimerization. Partially diminished transcriptional activation.	BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(2)|p.R416S(1)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		CTACTTAGACAGAGAAGCTGGG	0.416									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				31	63	---	---	---	---						.
CCDC151	115948	broad.mit.edu	37	19	11533253	11533255	+	In_Frame_Del	DEL	CTT	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:11533253_11533255delCTT	uc002mrs.2	-	10	1461_1463	c.1318_1320delAAG	c.(1318-1320)AAGdel	p.K440del	CCDC151_uc002mrr.2_In_Frame_Del_p.K375del|CCDC151_uc010dxz.2_In_Frame_Del_p.K380del	NM_145045	NP_659482	A5D8V7	CC151_HUMAN	coiled-coil domain containing 151	440	Potential.									ovary(1)	1						GCCGCTCCTCCTTCTTGAGACGC	0.714													6	4	---	---	---	---						.
LRRC25	126364	broad.mit.edu	37	19	18507766	18507766	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:18507766delC	uc002niw.2	-	1	650	c.8delG	c.(7-9)GGCfs	p.G3fs	LRRC25_uc002nix.2_Frame_Shift_Del_p.G3fs	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	3						integral to membrane					0						TGCCAGGGTGCCCCCCATTCA	0.612													14	17	---	---	---	---						.
FKBP8	23770	broad.mit.edu	37	19	18644139	18644139	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:18644139delC	uc002njk.1	-	7	1074	c.961delG	c.(961-963)GAGfs	p.E321fs	FKBP8_uc002nji.1_Frame_Shift_Del_p.E159fs|FKBP8_uc010xqi.1_Frame_Shift_Del_p.E350fs|FKBP8_uc002njj.1_Frame_Shift_Del_p.E322fs|FKBP8_uc002njl.1_Frame_Shift_Del_p.E322fs|FKBP8_uc002njm.1_Frame_Shift_Del_p.E321fs|FKBP8_uc010ebr.1_Frame_Shift_Del_p.E160fs|FKBP8_uc002njn.2_RNA	NM_012181	NP_036313	Q14318	FKBP8_HUMAN	FK506-binding protein 8	321	TPR 3.				apoptosis|interspecies interaction between organisms|intracellular signal transduction|protein folding	integral to endoplasmic reticulum membrane|mitochondrial membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding			ovary(1)	1						TCACTGTACTCCCCCTGCTGG	0.582													3	4	---	---	---	---						.
Unknown	0	broad.mit.edu	37	19	22780133	22780134	+	RNA	INS	-	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:22780133_22780134insA	uc002nqu.3	+	2		c.211_212insA								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		CTACAGGAGTGAAAAAGAAAAT	0.431													25	46	---	---	---	---						.
LRFN3	79414	broad.mit.edu	37	19	36431520	36431521	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:36431520_36431521insC	uc002oco.2	+	2	1645_1646	c.1193_1194insC	c.(1192-1194)GACfs	p.D398fs		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	398	Extracellular (Potential).				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			ACCAGCTGTGACCCCCCGCGGG	0.678													24	49	---	---	---	---						.
EGLN2	112398	broad.mit.edu	37	19	41306665	41306665	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:41306665delC	uc010ehd.2	+	8	1189	c.188delC	c.(187-189)ACCfs	p.T63fs	EGLN2_uc002opg.3_Frame_Shift_Del_p.T63fs|EGLN2_uc002oph.2_Frame_Shift_Del_p.T63fs|EGLN2_uc002opi.2_Frame_Shift_Del_p.T63fs	NM_080732	NP_542770	Q96KS0	EGLN2_HUMAN	EGL nine (C.elegans) homolog 2	63					cell redox homeostasis|estrogen receptor signaling pathway|positive regulation of protein catabolic process|regulation of cell growth|response to hypoxia	cytoplasm|nucleus	ferrous iron binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|oxygen sensor activity			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Vitamin C(DB00126)	GGGAGTGGGACCCCCAGAGCC	0.672													8	17	---	---	---	---						.
CYP2B6	1555	broad.mit.edu	37	19	41522669	41522670	+	Frame_Shift_Ins	INS	-	C	C	rs147410578		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:41522669_41522670insC	uc002opr.1	+	9	1420_1421	c.1413_1414insC	c.(1411-1416)ACACCCfs	p.T471fs	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Frame_Shift_Ins_p.T271fs	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	471_472					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	TCGATCTGACACCCCAGGAGTG	0.589													11	24	---	---	---	---						.
ERF	2077	broad.mit.edu	37	19	42753368	42753368	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:42753368delC	uc002ote.3	-	4	1054	c.896delG	c.(895-897)GGAfs	p.G299fs	ERF_uc002otd.3_Frame_Shift_Del_p.G30fs	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	299					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				GTGGGAGCCTCCCCCTGAGCC	0.677													16	14	---	---	---	---						.
ATF5	22809	broad.mit.edu	37	19	50434211	50434211	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:50434211delC	uc010enq.1	+	3	671	c.104delC	c.(103-105)GCCfs	p.A35fs	IL4I1_uc002pqv.1_5'Flank|IL4I1_uc010eno.1_5'Flank|IL4I1_uc002pqw.1_5'Flank|IL4I1_uc002pqu.1_5'Flank|NUP62_uc002pqx.2_5'Flank|NUP62_uc002pqy.2_5'Flank|NUP62_uc002pqz.2_5'Flank|NUP62_uc002pra.2_5'Flank|NUP62_uc002prb.2_5'Flank|NUP62_uc002prc.2_5'Flank|ATF5_uc002prd.2_Frame_Shift_Del_p.A35fs	NM_012068	NP_036200	Q9Y2D1	ATF5_HUMAN	activating transcription factor 5	35					regulation of transcription from RNA polymerase II promoter	cytoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			skin(2)	2		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00221)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		CCGGCCCCTGCCCCCCTGGCT	0.692													4	4	---	---	---	---						.
ZNF460	10794	broad.mit.edu	37	19	57802746	57802746	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr19:57802746delT	uc002qog.2	+	3	1159	c.837delT	c.(835-837)CCTfs	p.P279fs	ZNF460_uc010ygv.1_Frame_Shift_Del_p.P238fs	NM_006635	NP_006626	Q14592	ZN460_HUMAN	zinc finger protein 460	279					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GAGAGAAGCCTTTTGTGTGCA	0.493													34	75	---	---	---	---						.
RAD51AP2	729475	broad.mit.edu	37	2	17699325	17699326	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:17699325_17699326insG	uc002rcl.1	-	1	381_382	c.357_358insC	c.(355-360)CCCTCAfs	p.P119fs	RAD51AP2_uc010exn.1_Frame_Shift_Ins_p.P110fs	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	119_120										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GGACTTTGTGAGGGGGGAGACT	0.480													25	46	---	---	---	---						.
DNMT3A	1788	broad.mit.edu	37	2	25523009	25523009	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:25523009delG	uc002rgc.2	-	3	433	c.176delC	c.(175-177)CCGfs	p.P59fs	DNMT3A_uc002rgd.2_Frame_Shift_Del_p.P59fs|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rge.2_Frame_Shift_Del_p.P56fs|DNMT3A_uc002rgf.2_Frame_Shift_Del_p.P59fs	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	59					regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GACACTCACCGGGGGGTGCTT	0.647			Mis|F|N|S		AML								20	15	---	---	---	---						.
ZFP36L2	678	broad.mit.edu	37	2	43452512	43452512	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:43452512delC	uc002rsv.3	-	2	722	c.431delG	c.(430-432)GGCfs	p.G144fs	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	144	Poly-Gly.				cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				GGAGCCGCCGCCCCCCTTCTG	0.637													14	17	---	---	---	---						.
C2orf42	54980	broad.mit.edu	37	2	70402837	70402837	+	Frame_Shift_Del	DEL	T	-	-	rs140054933		TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:70402837delT	uc002sgh.2	-	5	1335	c.1007delA	c.(1006-1008)AAGfs	p.K336fs		NM_017880	NP_060350	Q9NWW7	CB042_HUMAN	hypothetical protein LOC54980	336											0						AACCACAGGCTTTTTCAGGCC	0.438													100	211	---	---	---	---						.
ANKRD20B	729171	broad.mit.edu	37	2	95483039	95483039	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:95483039delT	uc010fhq.1	-	1	508	c.116delA	c.(115-117)AATfs	p.N39fs	ANKRD20B_uc010fhp.2_RNA	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						TTCTTCTCTATTTTTTTTGTA	0.274													4	8	---	---	---	---						.
METTL8	79828	broad.mit.edu	37	2	172195839	172195839	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:172195839delT	uc010zdo.1	-	4	602	c.461delA	c.(460-462)AATfs	p.N154fs	METTL8_uc002ugu.3_Frame_Shift_Del_p.N154fs|METTL8_uc002ugv.3_Frame_Shift_Del_p.N154fs|METTL8_uc002ugt.3_Frame_Shift_Del_p.N154fs|METTL8_uc002ugs.3_Frame_Shift_Del_p.N104fs|METTL8_uc010zdp.1_Frame_Shift_Del_p.N109fs	NM_024770	NP_079046	B3KW44	B3KW44_HUMAN	methyltransferase like 8	154							methyltransferase activity			ovary(1)	1						CTCATAATGATTTTTTTCATC	0.383													55	122	---	---	---	---						.
TMEFF2	23671	broad.mit.edu	37	2	192863895	192863896	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:192863895_192863896insT	uc002utc.2	-	6	969_970	c.575_576insA	c.(574-576)AATfs	p.N192fs		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	192	Kazal-like 2.|Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			CGCAGAGGGGATTGAAGTTGGT	0.351													42	79	---	---	---	---						.
SLC39A10	57181	broad.mit.edu	37	2	196544941	196544942	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:196544941_196544942insA	uc002utg.3	+	2	389_390	c.175_176insA	c.(175-177)GAAfs	p.E59fs	SLC39A10_uc002uth.3_Frame_Shift_Ins_p.E59fs|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	59					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			TGCTGAAAATGAAAAAAAATAC	0.381													22	45	---	---	---	---						.
HSPD1	3329	broad.mit.edu	37	2	198353864	198353864	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:198353864delT	uc002uui.2	-	9	1214	c.1077delA	c.(1075-1077)AAAfs	p.K359fs	HSPD1_uc002uuj.2_Frame_Shift_Del_p.K357fs|HSPD1_uc010zgx.1_Frame_Shift_Del_p.K350fs|HSPD1_uc010fsm.2_Frame_Shift_Del_p.K170fs|HSPD1_uc002uuk.2_Frame_Shift_Del_p.K359fs	NM_002156	NP_002147	P10809	CH60_HUMAN	chaperonin	359					'de novo' protein folding|activation of caspase activity|B cell cytokine production|B cell proliferation|chaperone-mediated protein complex assembly|interspecies interaction between organisms|isotype switching to IgG isotypes|MyD88-dependent toll-like receptor signaling pathway|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of interferon-alpha production|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of macrophage activation|positive regulation of T cell activation|positive regulation of T cell mediated immune response to tumor cell|protein maturation|protein refolding|protein stabilization|response to unfolded protein|T cell activation	cell surface|coated pit|coated vesicle|cytosol|early endosome|extracellular space|lipopolysaccharide receptor complex|mitochondrial inner membrane|mitochondrial matrix|stored secretory granule	ATP binding|ATPase activity|cell surface binding|chaperone binding|DNA replication origin binding|lipopolysaccharide binding|p53 binding|single-stranded DNA binding				0			Epithelial(96;0.225)			CACCTTTTCCTTTTAAGAGCA	0.393													34	76	---	---	---	---						.
SLC4A3	6508	broad.mit.edu	37	2	220502335	220502335	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:220502335delC	uc002vmp.3	+	17	2837	c.2568delC	c.(2566-2568)TACfs	p.Y856fs	SLC4A3_uc002vmo.3_Frame_Shift_Del_p.Y883fs|SLC4A3_uc010fwm.2_Frame_Shift_Del_p.Y406fs|SLC4A3_uc010fwn.1_Frame_Shift_Del_p.Y365fs	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	856	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGCCGTTCTACCCCCCTGAGG	0.632													22	33	---	---	---	---						.
HDAC4	9759	broad.mit.edu	37	2	240002823	240002823	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:240002823delG	uc002vyk.3	-	22	3495	c.2703delC	c.(2701-2703)CCCfs	p.P901fs	HDAC4_uc010fyy.2_Frame_Shift_Del_p.P858fs	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	901	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		CGTCTCCCATGGGGGGGTCCA	0.602													5	7	---	---	---	---						.
THAP4	51078	broad.mit.edu	37	2	242573298	242573300	+	In_Frame_Del	DEL	TCT	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr2:242573298_242573300delTCT	uc002wbt.2	-	2	495_497	c.272_274delAGA	c.(271-276)AAGAGG>AGG	p.K91del		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	91							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		CCAGCCCCCCTCTTCTTCTCGGT	0.631													37	63	---	---	---	---						.
ProSAPiP1	9762	broad.mit.edu	37	20	3145148	3145150	+	In_Frame_Del	DEL	CTT	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:3145148_3145150delCTT	uc002wia.1	-	3	3370_3372	c.1972_1974delAAG	c.(1972-1974)AAGdel	p.K658del	ProSAPiP1_uc002wib.1_In_Frame_Del_p.K612del	NM_014731	NP_055546	O60299	PRIP1_HUMAN	ProSAPiP1 protein	658						cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				pancreas(1)	1						GGGTCCAGGCCTTCTTCTCCTCG	0.640													27	46	---	---	---	---						.
C20orf12	55184	broad.mit.edu	37	20	18396042	18396043	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr20:18396042_18396043insC	uc010zsa.1	-	11	1271_1272	c.1062_1063insG	c.(1060-1065)GGGACCfs	p.G354fs	C20orf12_uc010zrz.1_5'Flank|C20orf12_uc002wqp.3_Intron|C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Frame_Shift_Ins_p.G221fs|C20orf12_uc002wqq.3_Frame_Shift_Ins_p.G335fs|C20orf12_uc002wqu.1_RNA|C20orf12_uc010gct.1_RNA	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	162_163						intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				CAGGAAATGGTCCCCCCTTTCT	0.500													12	24	---	---	---	---						.
RIPK4	54101	broad.mit.edu	37	21	43166800	43166800	+	Frame_Shift_Del	DEL	C	-	-	rs149032082	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr21:43166800delC	uc002yzn.1	-	5	853	c.805delG	c.(805-807)GATfs	p.D269fs		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	269						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						ACTCGCGGATCCCCCTGCCAG	0.687													11	17	---	---	---	---						.
LOC91316	91316	broad.mit.edu	37	22	24056436	24056436	+	RNA	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr22:24056436delG	uc011aiz.1	-	3		c.673delC			LOC91316_uc010gub.1_RNA	NR_024448				Homo sapiens cDNA FLJ32313 fis, clone PROST2003232, weakly similar to BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31).												0						CGATGTAGGTGGGGGGTGTCG	0.567													8	14	---	---	---	---						.
KCNH8	131096	broad.mit.edu	37	3	19384076	19384079	+	Splice_Site	DEL	CAGA	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:19384076_19384079delCAGA	uc003cbk.1	+	4	638	c.443_splice	c.e4-1	p.D148_splice	KCNH8_uc011awe.1_Splice_Site_p.D148_splice|KCNH8_uc010hex.1_Splice_Site	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,							integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TATTTTCCCCCAGACAAAGTCAAA	0.446													17	38	---	---	---	---						.
SGOL1	151648	broad.mit.edu	37	3	20212216	20212216	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:20212216delT	uc003cbs.2	-	8	1751	c.1564delA	c.(1564-1566)AGAfs	p.R522fs	SGOL1_uc003cbr.2_Frame_Shift_Del_p.R253fs|SGOL1_uc010hfa.2_Intron|SGOL1_uc003cbt.2_Frame_Shift_Del_p.R270fs|SGOL1_uc003cbu.2_Frame_Shift_Del_p.R522fs|SGOL1_uc003cbv.2_Frame_Shift_Del_p.R270fs|SGOL1_uc003cbw.2_Frame_Shift_Del_p.R253fs|SGOL1_uc003cbx.2_Frame_Shift_Del_p.S270fs|SGOL1_uc003cby.2_Frame_Shift_Del_p.S253fs|SGOL1_uc003cbz.2_Frame_Shift_Del_p.S522fs|SGOL1_uc003cca.2_Frame_Shift_Del_p.S522fs|SGOL1_uc003ccb.2_Frame_Shift_Del_p.S270fs|SGOL1_uc003ccc.2_Frame_Shift_Del_p.S253fs	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	522					attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						TGTTTCATACTTTTTTTAGAA	0.343													16	37	---	---	---	---						.
PCBP4	57060	broad.mit.edu	37	3	51992261	51992261	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:51992261delG	uc003dcd.1	-	12	1424	c.1028delC	c.(1027-1029)CCTfs	p.P343fs	PCBP4_uc003dcb.1_Frame_Shift_Del_p.P309fs|PCBP4_uc003dcc.1_Frame_Shift_Del_p.P364fs|PCBP4_uc003dce.1_Frame_Shift_Del_p.P344fs|PCBP4_uc003dcf.1_Frame_Shift_Del_p.P343fs|PCBP4_uc003dcg.1_Frame_Shift_Del_p.P309fs|PCBP4_uc003dch.1_Frame_Shift_Del_p.P343fs|PCBP4_uc003dci.1_Frame_Shift_Del_p.P183fs|PCBP4_uc003dcj.1_Frame_Shift_Del_p.P343fs|PCBP4_uc003dck.1_Frame_Shift_Del_p.P300fs|PCBP4_uc003dcl.1_Intron	NM_033010	NP_127503	P57723	PCBP4_HUMAN	poly(rC) binding protein 4 isoform c	343						cytoplasm|ribonucleoprotein complex	DNA binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CAGCAGGCCAGGGGGAGCTGT	0.687													19	35	---	---	---	---						.
FEZF2	55079	broad.mit.edu	37	3	62357717	62357717	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr3:62357717delT	uc003dlh.2	-	1	1034	c.827delA	c.(826-828)AACfs	p.N276fs	FEZF2_uc003dli.2_Frame_Shift_Del_p.N276fs	NM_018008	NP_060478	Q8TBJ5	FEZF2_HUMAN	FEZ family zinc finger 2	276					transcription, DNA-dependent	nucleus	zinc ion binding			lung(1)	1		Lung SC(41;0.0262)		BRCA - Breast invasive adenocarcinoma(55;0.000221)|KIRC - Kidney renal clear cell carcinoma(15;0.00834)|Kidney(15;0.00957)		GCAGGTGAAGTTTTTGGGCTT	0.677													7	4	---	---	---	---						.
SMR3A	26952	broad.mit.edu	37	4	71232432	71232432	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:71232432delT	uc003hfg.1	+	3	207	c.126delT	c.(124-126)TGTfs	p.C42fs	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	42	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				CTCCACCATGTTTTCCTTTTG	0.517													27	46	---	---	---	---						.
CLGN	1047	broad.mit.edu	37	4	141313501	141313502	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:141313501_141313502insT	uc011chi.1	-	14	1740_1741	c.1522_1523insA	c.(1522-1524)ACCfs	p.T508fs	CLGN_uc003iii.2_Frame_Shift_Ins_p.T508fs	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	508	Cytoplasmic (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					ACATATGTCGGTTTTTTTATAC	0.327													20	39	---	---	---	---						.
FBXW7	55294	broad.mit.edu	37	4	153244156	153244156	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:153244156delC	uc003ims.2	-	12	2150	c.2001delG	c.(1999-2001)GGGfs	p.G667fs	FBXW7_uc011cii.1_Frame_Shift_Del_p.G667fs|FBXW7_uc003imt.2_Frame_Shift_Del_p.G667fs|FBXW7_uc011cih.1_Frame_Shift_Del_p.G491fs|FBXW7_uc003imq.2_Frame_Shift_Del_p.G587fs|FBXW7_uc003imr.2_Frame_Shift_Del_p.G549fs	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	667					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.S668fs*26(1)|p.S668fs*39(1)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				CTCCCCCACTCCCCCCACTCT	0.488			Mis|N|D|F		colorectal|endometrial|T-ALL								73	96	---	---	---	---						.
WWC2	80014	broad.mit.edu	37	4	184166576	184166576	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:184166576delA	uc010irx.2	+	6	792	c.610delA	c.(610-612)AAAfs	p.K204fs	WWC2_uc003ivk.3_5'UTR|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Intron	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	204										ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		CAGAATTGATAAAAAAATGTC	0.353													3	5	---	---	---	---						.
CYP4V2	285440	broad.mit.edu	37	4	187118245	187118245	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr4:187118245delT	uc003iyw.3	+	4	869	c.565delT	c.(565-567)TTTfs	p.F189fs		NM_207352	NP_997235	Q6ZWL3	CP4V2_HUMAN	cytochrome P450, family 4, subfamily v,	189					response to stimulus|visual perception	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.33e-10)|BRCA - Breast invasive adenocarcinoma(30;3.84e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000293)|LUSC - Lung squamous cell carcinoma(40;0.00242)|READ - Rectum adenocarcinoma(43;0.17)		ATTTAACTGCTTTTTTTACAT	0.323													38	42	---	---	---	---						.
TPPP	11076	broad.mit.edu	37	5	678052	678052	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:678052delC	uc003jbg.3	-	1	842	c.124delG	c.(124-126)GCAfs	p.A42fs	TPPP_uc003jbh.3_Frame_Shift_Del_p.A42fs	NM_007030	NP_008961	O94811	TPPP_HUMAN	tubulin polymerization promoting protein	42	Mediates interaction with LIMK1.				microtubule bundle formation|microtubule polymerization|positive regulation of protein polymerization	nucleus|perinuclear region of cytoplasm|soluble fraction	calcium ion binding|microtubule binding				0		Ovarian(839;0.0563)	Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)	GBM - Glioblastoma multiforme(108;0.0191)		GATGCGGCTGCCCCCTCACCA	0.697													9	19	---	---	---	---						.
HCN1	348980	broad.mit.edu	37	5	45303784	45303785	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:45303784_45303785insT	uc003jok.2	-	6	1559_1560	c.1534_1535insA	c.(1534-1536)ATGfs	p.M512fs		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	512	cAMP.|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						AATGAAATACATTTTTTTACCC	0.401													37	86	---	---	---	---						.
ZCCHC9	84240	broad.mit.edu	37	5	80608440	80608441	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:80608440_80608441insA	uc003khj.2	+	6	908_909	c.775_776insA	c.(775-777)CAAfs	p.Q259fs	RNU5E_uc011cto.1_Intron|ZCCHC9_uc003khk.3_Frame_Shift_Ins_p.Q259fs|ZCCHC9_uc003khi.2_Frame_Shift_Ins_p.Q259fs	NM_001131035	NP_001124507	Q8N567	ZCHC9_HUMAN	zinc finger, CCHC domain containing 9	259							nucleic acid binding|zinc ion binding			ovary(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;8.18e-45)|Epithelial(54;2.72e-39)|all cancers(79;7.33e-34)		ACCTAAACCGCAAAAACCCAAA	0.386													27	60	---	---	---	---						.
PGGT1B	5229	broad.mit.edu	37	5	114572215	114572215	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:114572215delA	uc003kqw.3	-	5	505	c.484delT	c.(484-486)TGTfs	p.C162fs	PGGT1B_uc003kqx.3_Frame_Shift_Del_p.C39fs|PGGT1B_uc010jch.2_Frame_Shift_Del_p.C162fs	NM_005023	NP_005014	P53609	PGTB1_HUMAN	geranylgeranyltransferase type 1 beta	162	PFTB 1.				protein geranylgeranylation	CAAX-protein geranylgeranyltransferase complex	CAAX-protein geranylgeranyltransferase activity				0		all_cancers(142;0.000523)|all_epithelial(76;6.45e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		Epithelial(69;2.95e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.98e-08)|all cancers(49;3.1e-06)	Pravastatin(DB00175)	GGTACTGCACAAAAACTGAAA	0.368													25	34	---	---	---	---						.
MIR1303	100302284	broad.mit.edu	37	5	154065380	154065383	+	RNA	DEL	TTTA	-	-	rs149953688	by1000genomes	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr5:154065380_154065383delTTTA	hsa-mir-1303|MI0006370	+			c.45_48delTTTA																				0						Tttttttttttttaaattttagag	0.157													16	31	---	---	---	---						.
PPP1R10	5514	broad.mit.edu	37	6	30570045	30570045	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:30570045delC	uc003nqn.1	-	19	2933	c.2381delG	c.(2380-2382)GGTfs	p.G794fs	PPP1R10_uc010jsc.1_Frame_Shift_Del_p.G448fs	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	794	Gly-rich.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						ATGTCCTCCACCCCCACCCAT	0.667													66	133	---	---	---	---						.
BAT2	7916	broad.mit.edu	37	6	31602641	31602641	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:31602641delC	uc003nvb.3	+	21	5296	c.5047delC	c.(5047-5049)CCCfs	p.P1683fs	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Frame_Shift_Del_p.P1683fs	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1683	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						AGCAGAGGGACCCCCCAAGAG	0.627													20	44	---	---	---	---						.
EHMT2	10919	broad.mit.edu	37	6	31852462	31852462	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:31852462delG	uc003nxz.1	-	20	2573	c.2563delC	c.(2563-2565)CTGfs	p.L855fs	EHMT2_uc003nxv.1_5'UTR|EHMT2_uc003nxw.1_5'UTR|EHMT2_uc003nxx.1_Frame_Shift_Del_p.L53fs|EHMT2_uc003nxy.1_Frame_Shift_Del_p.L653fs|EHMT2_uc011don.1_Frame_Shift_Del_p.L878fs|EHMT2_uc003nya.1_Frame_Shift_Del_p.L821fs	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	855	ANK 7.				DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						GCGATGTGCAGGGGGGTGTCC	0.657													13	20	---	---	---	---						.
SKIV2L	6499	broad.mit.edu	37	6	31937383	31937383	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:31937383delG	uc003nyn.1	+	28	4021	c.3632delG	c.(3631-3633)CGGfs	p.R1211fs	SKIV2L_uc011dou.1_Frame_Shift_Del_p.R1053fs|SKIV2L_uc011dov.1_Frame_Shift_Del_p.R1018fs|STK19_uc003nyt.2_5'Flank|STK19_uc011dow.1_5'Flank|STK19_uc011dox.1_5'Flank|STK19_uc003nyv.2_5'Flank|STK19_uc003nyw.2_5'Flank|STK19_uc010jtn.1_5'Flank	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	1211						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CGCTCACTGCGGGGGGCAGCC	0.657													31	60	---	---	---	---						.
STK38	11329	broad.mit.edu	37	6	36465583	36465583	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:36465583delA	uc003omg.2	-	11	1734	c.1146delT	c.(1144-1146)TTTfs	p.F382fs	STK38_uc003omh.2_Frame_Shift_Del_p.F382fs|STK38_uc003omi.2_Frame_Shift_Del_p.F382fs	NM_007271	NP_009202	Q15208	STK38_HUMAN	serine/threonine kinase 38	382	Protein kinase.				intracellular protein kinase cascade|negative regulation of MAP kinase activity	cytoplasm|MLL5-L complex	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6						CAACGCCTTCAAAAAAAGAGT	0.368													37	47	---	---	---	---						.
CRISP1	167	broad.mit.edu	37	6	49825088	49825088	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:49825088delA	uc003ozw.2	-	2	105	c.26delT	c.(25-27)TTGfs	p.L9fs	CRISP1_uc003ozx.2_Frame_Shift_Del_p.L9fs	NM_001131	NP_001122	P54107	CRIS1_HUMAN	acidic epididymal glycoprotein-like 1 isoform 1	9					fusion of sperm to egg plasma membrane	extracellular space					0	Lung NSC(77;0.0358)					AGCAGCAACCAAAAACAAGAG	0.294													26	50	---	---	---	---						.
ZNF451	26036	broad.mit.edu	37	6	57015648	57015649	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr6:57015648_57015649insG	uc003pdm.1	+	11	2964_2965	c.2740_2741insG	c.(2740-2742)TGGfs	p.W914fs	ZNF451_uc003pdl.2_Frame_Shift_Ins_p.W914fs|ZNF451_uc003pdn.1_Intron|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Frame_Shift_Ins_p.W914fs	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	914					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			AACATTTATTTGGGGCTTTCAA	0.361													53	115	---	---	---	---						.
CLDN4	1364	broad.mit.edu	37	7	73246063	73246063	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:73246063delG	uc003tzi.3	+	1	871	c.532delG	c.(532-534)GGGfs	p.G178fs	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	178	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				GCTCCTTGGCGGGGGGCTGCT	0.642													19	38	---	---	---	---						.
CADPS2	93664	broad.mit.edu	37	7	122194676	122194676	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:122194676delT	uc010lkp.2	-	8	1566	c.1403delA	c.(1402-1404)AATfs	p.N468fs	CADPS2_uc003vkg.3_Frame_Shift_Del_p.N168fs|CADPS2_uc010lkq.2_Frame_Shift_Del_p.N468fs	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	468					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						ATCCTGGCTATTTTTTGGAAC	0.363													17	21	---	---	---	---						.
UBN2	254048	broad.mit.edu	37	7	138978021	138978022	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:138978021_138978022delCT	uc011kqr.1	+	16	3713_3714	c.3713_3714delCT	c.(3712-3714)ACTfs	p.T1238fs		NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	1238										ovary(1)|skin(1)	2						TCACCTCTGACTCTCATGACAT	0.446													31	63	---	---	---	---						.
ZNF775	285971	broad.mit.edu	37	7	150093851	150093851	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr7:150093851delC	uc003whf.1	+	3	407	c.282delC	c.(280-282)GGCfs	p.G94fs		NM_173680	NP_775951	Q96BV0	ZN775_HUMAN	zinc finger protein 775	94					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.0173)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAGCCTCCGGCCCCCTGAGCC	0.687													3	4	---	---	---	---						.
ZFHX4	79776	broad.mit.edu	37	8	77766490	77766495	+	In_Frame_Del	DEL	CAGCCA	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:77766490_77766495delCAGCCA	uc003yav.2	+	10	7585_7590	c.7198_7203delCAGCCA	c.(7198-7203)CAGCCAdel	p.QP2406del	ZFHX4_uc003yau.1_In_Frame_Del_p.QP2451del|ZFHX4_uc003yaw.1_In_Frame_Del_p.QP2406del	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2406_2407	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATccacagcccagccacagccacagc	0.461										HNSCC(33;0.089)			5	8	---	---	---	---						.
ZFHX4	79776	broad.mit.edu	37	8	77767554	77767554	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:77767554delT	uc003yav.2	+	10	8649	c.8262delT	c.(8260-8262)GATfs	p.D2754fs	ZFHX4_uc003yau.1_Frame_Shift_Del_p.D2799fs|ZFHX4_uc003yaw.1_Frame_Shift_Del_p.D2754fs	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2754						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATAAAACCGATTTTGATGAGA	0.443										HNSCC(33;0.089)			16	34	---	---	---	---						.
POP1	10940	broad.mit.edu	37	8	99162863	99162863	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:99162863delA	uc003yij.3	+	14	2153	c.2053delA	c.(2053-2055)AAAfs	p.K685fs	POP1_uc011lgv.1_Frame_Shift_Del_p.K685fs|POP1_uc003yik.2_Frame_Shift_Del_p.K685fs	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	685					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			TGAAAAGTACAAAAGGTAAGA	0.413													22	39	---	---	---	---						.
FER1L6	654463	broad.mit.edu	37	8	125072848	125072848	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:125072848delT	uc003yqw.2	+	24	3251	c.3045delT	c.(3043-3045)CCTfs	p.P1015fs	uc003yqy.1_RNA	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1015	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TGGATCGGCCTCAGGCTCTCA	0.547													22	36	---	---	---	---						.
PHF20L1	51105	broad.mit.edu	37	8	133790151	133790151	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:133790151delA	uc003ytt.2	+	2	402	c.77delA	c.(76-78)CAAfs	p.Q26fs	PHF20L1_uc003ytr.2_Frame_Shift_Del_p.Q26fs|PHF20L1_uc010mdv.2_Frame_Shift_Del_p.Q26fs|PHF20L1_uc003yts.2_Frame_Shift_Del_p.Q26fs|PHF20L1_uc011lja.1_Frame_Shift_Del_p.Q26fs|PHF20L1_uc003ytu.1_RNA|PHF20L1_uc003ytq.2_Frame_Shift_Del_p.Q26fs	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	26	Tudor 1.						nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			GACTACTTACAAAAATGGTAT	0.363													28	63	---	---	---	---						.
PPP1R16A	84988	broad.mit.edu	37	8	145727027	145727027	+	Frame_Shift_Del	DEL	C	-	-	rs139247503	byFrequency	TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr8:145727027delC	uc003zdd.2	+	11	2241	c.1328delC	c.(1327-1329)ACCfs	p.T443fs	uc003zde.1_5'Flank|PPP1R16A_uc003zdf.2_Frame_Shift_Del_p.T443fs|GPT_uc011lli.1_5'Flank|GPT_uc011llj.1_5'Flank|GPT_uc003zdh.3_5'Flank	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	443						plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			GACAGCACCACCCCCCACACC	0.672													5	5	---	---	---	---						.
KIAA1797	54914	broad.mit.edu	37	9	20912931	20912931	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:20912931delA	uc003zog.1	+	25	3148	c.2785delA	c.(2785-2787)AAAfs	p.K929fs	KIAA1797_uc003zoh.1_Frame_Shift_Del_p.K365fs	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	929						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		GGTGCAGTACAAAAAAAGCAC	0.438													14	15	---	---	---	---						.
VPS13A	23230	broad.mit.edu	37	9	79931169	79931169	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:79931169delA	uc004akr.2	+	39	4970	c.4710delA	c.(4708-4710)ACAfs	p.T1570fs	VPS13A_uc004akp.3_Frame_Shift_Del_p.T1570fs|VPS13A_uc004akq.3_Frame_Shift_Del_p.T1570fs|VPS13A_uc004aks.2_Frame_Shift_Del_p.T1531fs|VPS13A_uc004akt.2_5'Flank|VPS13A_uc010mpo.1_Frame_Shift_Del_p.T166fs	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1570					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						CTGACATGACAAAAAATGATG	0.308													34	78	---	---	---	---						.
GABBR2	9568	broad.mit.edu	37	9	101125082	101125082	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:101125082delC	uc004ays.2	-	13	1964	c.1808delG	c.(1807-1809)GGCfs	p.G603fs		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	603	Helical; Name=4; (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	CAGCAGCATGCCCCCCACGAT	0.582													15	27	---	---	---	---						.
GABBR2	9568	broad.mit.edu	37	9	101304280	101304281	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chr9:101304280_101304281insT	uc004ays.2	-	3	660_661	c.504_505insA	c.(502-507)AAATACfs	p.K168fs		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	168_169	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	AAATAAGGGTATTTTTTCTTAT	0.485													21	29	---	---	---	---						.
STS	412	broad.mit.edu	37	X	7268078	7268079	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:7268078_7268079delAG	uc004cry.3	+	10	1773_1774	c.1528_1529delAG	c.(1528-1530)AGAfs	p.R510fs		NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	510	Lumenal.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	CAAAGATCCCAGAGAGAGAAAC	0.515									Ichthyosis				22	29	---	---	---	---						.
FRMPD4	9758	broad.mit.edu	37	X	12704241	12704241	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:12704241delT	uc004cuz.1	+	7	1105	c.599delT	c.(598-600)CTTfs	p.L200fs	FRMPD4_uc011mij.1_Frame_Shift_Del_p.L192fs	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	200					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AACTCACTTCTTTTTATGCCA	0.363													54	69	---	---	---	---						.
FRMPD4	9758	broad.mit.edu	37	X	12734539	12734539	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:12734539delT	uc004cuz.1	+	15	2467	c.1961delT	c.(1960-1962)ATTfs	p.I654fs	FRMPD4_uc011mij.1_Frame_Shift_Del_p.I646fs	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	654					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GTGTCCTTTATTTTTGGAGAC	0.478													98	143	---	---	---	---						.
FRMPD4	9758	broad.mit.edu	37	X	12736566	12736566	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:12736566delT	uc004cuz.1	+	16	4127	c.3621delT	c.(3619-3621)CATfs	p.H1207fs	FRMPD4_uc011mij.1_Frame_Shift_Del_p.H1199fs	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1207					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GCGAGGGCCATTTTTCTCTGC	0.602													87	160	---	---	---	---						.
SCML2	10389	broad.mit.edu	37	X	18265925	18265926	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:18265925_18265926delGA	uc004cyl.2	-	12	1690_1691	c.1533_1534delTC	c.(1531-1536)TCTCCTfs	p.S511fs	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Frame_Shift_Del_p.S511fs|SCML2_uc011miz.1_Frame_Shift_Del_p.S445fs|SCML2_uc010nfc.2_Frame_Shift_Del_p.S247fs	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	511_512					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					GGGAGCTTAGGAGAGAGAGGAA	0.411													44	67	---	---	---	---						.
SRPX	8406	broad.mit.edu	37	X	38020284	38020284	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:38020284delG	uc004ddy.1	-	6	763	c.677delC	c.(676-678)CCAfs	p.P226fs	SRPX_uc004ddz.1_Frame_Shift_Del_p.P206fs|SRPX_uc011mkh.1_Frame_Shift_Del_p.P167fs|SRPX_uc011mki.1_Frame_Shift_Del_p.P226fs	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	226	HYR.				cell adhesion	cell surface|membrane					0						GTTGGAGCCTGGGGGGAGGCC	0.433													48	81	---	---	---	---						.
MID1IP1	58526	broad.mit.edu	37	X	38664436	38664437	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:38664436_38664437insT	uc004dei.3	+	3	661_662	c.237_238insT	c.(235-240)AGCTTTfs	p.S79fs	MID1IP1_uc010ngz.2_Frame_Shift_Ins_p.S79fs|MID1IP1_uc004dej.3_Frame_Shift_Ins_p.S79fs	NM_001098790	NP_001092260	Q9NPA3	M1IP1_HUMAN	MID1 interacting G12-like protein	79_80					lipid biosynthetic process|negative regulation of microtubule depolymerization|positive regulation of fatty acid biosynthetic process|positive regulation of ligase activity|protein polymerization	cytosol|microtubule|nucleus					0						CCAATGGCAGCTTTTTCGCGCC	0.658													24	40	---	---	---	---						.
KDM6A	7403	broad.mit.edu	37	X	44928976	44928976	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:44928976delG	uc004dge.3	+	17	2451	c.2076delG	c.(2074-2076)CAGfs	p.Q692fs	KDM6A_uc010nhk.2_Frame_Shift_Del_p.Q658fs|KDM6A_uc011mkz.1_Frame_Shift_Del_p.Q744fs|KDM6A_uc011mla.1_Frame_Shift_Del_p.Q647fs|KDM6A_uc011mlb.1_Frame_Shift_Del_p.Q699fs|KDM6A_uc011mlc.1_Frame_Shift_Del_p.Q396fs|KDM6A_uc011mld.1_Frame_Shift_Del_p.Q331fs	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	692					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						CAGTAACACAGGGGGCTGCTC	0.517			D|N|F|S		renal|oesophageal SCC|MM								13	18	---	---	---	---						.
ZC3H12B	340554	broad.mit.edu	37	X	64722644	64722644	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:64722644delC	uc010nko.2	+	5	2042	c.2033delC	c.(2032-2034)ACCfs	p.T678fs		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	678							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						CCTGGGGCAACCCCCCAGCCA	0.607													17	22	---	---	---	---						.
TCEAL1	9338	broad.mit.edu	37	X	102884976	102884978	+	In_Frame_Del	DEL	GGA	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:102884976_102884978delGGA	uc004eks.2	+	3	306_308	c.132_134delGGA	c.(130-135)TCGGAG>TCG	p.E47del	TCEAL1_uc004ekt.2_In_Frame_Del_p.E47del|TCEAL1_uc004eku.2_In_Frame_Del_p.E47del	NM_001006640	NP_001006641	Q15170	TCAL1_HUMAN	transcription elongation factor A (SII)-like 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGCAGTCCTCGGAGGAGGAGTTC	0.640													11	16	---	---	---	---						.
FAM199X	139231	broad.mit.edu	37	X	103411513	103411513	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:103411513delC	uc004elw.2	+	1	213	c.47delC	c.(46-48)ACCfs	p.T16fs		NM_207318	NP_997201	Q6PEV8	F199X_HUMAN	hypothetical protein LOC139231	16										ovary(1)	1						AAGTTTCTAACCCCCGAGGAG	0.687													10	6	---	---	---	---						.
NRK	203447	broad.mit.edu	37	X	105150564	105150564	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:105150564delA	uc004emd.2	+	11	1306	c.1003delA	c.(1003-1005)AAAfs	p.K335fs	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	335							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TGGAATCATTAAAAAAAGACA	0.303										HNSCC(51;0.14)			7	7	---	---	---	---						.
GPC4	2239	broad.mit.edu	37	X	132439844	132439845	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:132439844_132439845insG	uc004exc.1	-	6	1322_1323	c.1110_1111insC	c.(1108-1113)CCCGAGfs	p.P370fs	GPC4_uc011mvg.1_Frame_Shift_Ins_p.P300fs	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	370_371					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GGGCGTTCCTCGGGGTGATGTG	0.545													97	186	---	---	---	---						.
MAGEC1	9947	broad.mit.edu	37	X	140994072	140994072	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8361-01A-11D-2340-08	TCGA-BR-8361-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	26985e4e-fded-436d-a91c-2bec1320d1de	f1302613-5b3d-4f3c-b1d4-117355484e8e	g.chrX:140994072delT	uc004fbt.2	+	4	1168	c.882delT	c.(880-882)ACTfs	p.T294fs	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	294							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTCAGAGTACTTTTGAGGGTT	0.502										HNSCC(15;0.026)			105	239	---	---	---	---						.
