Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PKHD1L1	93035	broad.mit.edu	37	8	110412463	110412463	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr8:110412463C>T	ENST00000378402.5	+	13	1275	c.1171C>T	c.(1171-1173)Cgc>Tgc	p.R391C		NM_177531.4	NP_803875.2	Q86WI1	PKHL1_HUMAN	polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1	391					immune response	cytosol|extracellular space|integral to membrane	receptor activity			NS(4)|breast(13)|central_nervous_system(6)|cervix(1)|endometrium(19)|kidney(17)|large_intestine(34)|lung(122)|ovary(11)|pancreas(3)|prostate(9)|skin(3)|stomach(4)|upper_aerodigestive_tract(13)|urinary_tract(4)	263			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATTTGTTGCACGCTTTAGTGG	0.418000										HNSCC(38;0.096)			57	218					0	0	1	0	0
DNM1P47	0	broad.mit.edu	37	15	102292723	102292723	+	RNA	SNP	A	A	C	rs143622092	by1000genomes	TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr15:102292723A>C	ENST00000561463.1	+	0	769																											GCGTGGGAACAAGGAGACACT	0.587000													3	18					0	0	1	0	0
PHLDB1	23187	broad.mit.edu	37	11	118499187	118499187	+	Missense_Mutation	SNP	G	G	A			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr11:118499187G>A	ENST00000361417.2	+	7	2059	c.1648G>A	c.(1648-1650)Gct>Act	p.A550T	PHLDB1_ENST00000356063.5_Missense_Mutation_p.A550T	NM_015157.3	NP_055972.1	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B, member 1	550										breast(3)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(10)|liver(3)|lung(14)|ovary(2)|pancreas(1)|prostate(3)|skin(1)	46	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TCTTACTGGGGCTTCACCCTG	0.612000													5	8					0	0	1	0	0
ACSM4	341392	broad.mit.edu	37	12	7477186	7477186	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr12:7477186C>T	ENST00000399422.4	+	11	1576	c.1528C>T	c.(1528-1530)Cgc>Tgc	p.R510C		NM_001080454.1	NP_001073923.1	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	510					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			endometrium(6)|kidney(1)|lung(14)	21						AGATCAAATCCGCGGAGAGGT	0.438000													15	29					0	0	1	0	0
DAK	26007	broad.mit.edu	37	11	61110817	61110817	+	Missense_Mutation	SNP	G	G	A			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr11:61110817G>A	ENST00000394900.3	+	11	1098	c.869G>A	c.(868-870)gGc>gAc	p.G290D		NM_015533.3	NP_056348.2	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2 homolog (S. cerevisiae)	290	DhaK.				glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding			NS(1)|breast(3)|endometrium(3)|large_intestine(5)|lung(8)|prostate(2)|upper_aerodigestive_tract(1)	23						ATTGCAGAGGGCCGCGGGGTG	0.562000													50	54					0	0	1	0	0
SF3B1	23451	broad.mit.edu	37	2	198267483	198267483	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr2:198267483C>T	ENST00000335508.6	-	14	1965	c.1874G>A	c.(1873-1875)cGt>cAt	p.R625H		NM_012433.2	NP_036565.2	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1, 155kDa						nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding	p.R625L(9)|p.R625P(2)|p.R625H(1)		NS(35)|breast(10)|central_nervous_system(3)|endometrium(8)|haematopoietic_and_lymphoid_tissue(524)|kidney(4)|large_intestine(10)|lung(19)|ovary(1)|pancreas(4)|prostate(6)|salivary_gland(1)|skin(4)|testis(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	633			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TGTTGTGTTACGGACATACTC	0.438000			Mis		myelodysplastic syndrome								17	24					0	0	1	0	0
GNA11	2767	broad.mit.edu	37	19	3118942	3118942	+	Missense_Mutation	SNP	A	A	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr19:3118942A>T	ENST00000078429.4	+	5	868	c.626A>T	c.(625-627)cAg>cTg	p.Q209L	GNA11_ENST00000586180.1_3'UTR|AC005262.3_ENST00000587701.1_RNA	NM_002067.2	NP_002058.2	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein), alpha 11 (Gq class)	209					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity	p.Q209L(80)|p.Q209P(2)		endometrium(2)|eye(132)|kidney(1)|large_intestine(2)|lung(1)|meninges(5)|ovary(1)|prostate(1)|skin(16)	161		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		GTGGGGGGCCAGCGGTCGGAG	0.612000			Mis		uveal melanoma								24	24					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1101116	1101116	+	Silent	SNP	C	C	A			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr11:1101116C>A	ENST00000441003.2	+	41	7542	c.7515C>A	c.(7513-7515)acC>acA	p.T2505T		NM_002457.2	NP_002448.2	Q02817	MUC2_HUMAN	mucin 2, oligomeric mucus/gel-forming	4867						inner mucus layer|outer mucus layer	protein binding			NS(3)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(26)|haematopoietic_and_lymphoid_tissue(4)|kidney(11)|large_intestine(5)|lung(22)|ovary(2)|prostate(16)|skin(5)|stomach(1)|upper_aerodigestive_tract(2)	102		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	AAGACGGCACCTACCTCGCCA	0.612000													16	33					3.45872e-05	3.63609e-05	1	1	0
SEL1L3	23231	broad.mit.edu	37	4	25836895	25836895	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr4:25836895C>T	ENST00000399878.3	-	3	906	c.784G>A	c.(784-786)Ggc>Agc	p.G262S	SEL1L3_ENST00000513364.1_5'UTR|SEL1L3_ENST00000264868.5_Missense_Mutation_p.G227S|SEL1L3_ENST00000502949.1_Missense_Mutation_p.G109S	NM_015187.3	NP_056002.2	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3 (C. elegans)	262						integral to membrane	binding			breast(1)|endometrium(1)|kidney(2)|large_intestine(1)|lung(6)|prostate(1)|urinary_tract(2)	14						TTGACAATGCCTGTGTTTTCT	0.502000													32	43					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80408455	80408455	+	Missense_Mutation	SNP	A	A	G			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr5:80408455A>G	ENST00000265080.4	+	14	1932	c.1865A>G	c.(1864-1866)gAc>gGc	p.D622G		NM_006909.2	NP_008840.1	O14827	RGRF2_HUMAN	Ras protein-specific guanine nucleotide-releasing factor 2	622					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			biliary_tract(1)|breast(5)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|lung(28)|ovary(5)|prostate(3)|skin(4)|soft_tissue(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	75		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CATAAAGACGACACTGACATT	0.522000													40	48					0	0	1	0	0
ZSCAN16	80345	broad.mit.edu	37	6	28093443	28093443	+	Silent	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr6:28093443C>T	ENST00000340487.4	+	2	371	c.222C>T	c.(220-222)tgC>tgT	p.C74C	ZSCAN16-AS1_ENST00000600652.1_RNA|ZSCAN16-AS1_ENST00000602810.1_RNA	NM_025231.1	NP_079507.1	Q9H4T2	ZSC16_HUMAN	zinc finger and SCAN domain containing 16	74	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(5)|liver(1)|lung(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	10						GGCCAGAATGCCACACCAAGG	0.547000													4	215					0	0	1	0	0
ARNT2	9915	broad.mit.edu	37	15	80762584	80762584	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr15:80762584C>T	ENST00000533983.1	+	5	526	c.187C>T	c.(187-189)Cgc>Tgc	p.R63C	ARNT2_ENST00000531595.3_3'UTR|ARNT2_ENST00000303329.4_Missense_Mutation_p.R74C|ARNT2_ENST00000527771.1_Missense_Mutation_p.R63C			Q9HBZ2	ARNT2_HUMAN	aryl-hydrocarbon receptor nuclear translocator 2	74					central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			NS(1)|central_nervous_system(3)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(16)|ovary(1)|pancreas(2)|prostate(2)|skin(1)	35			BRCA - Breast invasive adenocarcinoma(143;0.134)			AATCGAAAGGCGCAGACGGAA	0.498000													14	10					0	0	1	0	0
RP11-556N21.1	0	broad.mit.edu	37	13	25168432	25168432	+	RNA	SNP	T	T	C	rs149337771	by1000genomes	TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr13:25168432T>C	ENST00000453498.1	+	0	1104				TPTE2P6_ENST00000440905.1_RNA																							TTGAAACAGCTGGTGTATTAA	0.373000													3	18					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2443545	2443545	+	Missense_Mutation	SNP	G	G	A			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr11:2443545G>A	ENST00000452833.1	-	2	132	c.124C>T	c.(124-126)Cgg>Tgg	p.R42W	TRPM5_ENST00000155858.6_Missense_Mutation_p.R42W|TRPM5_ENST00000533060.1_Missense_Mutation_p.R42W|TRPM5_ENST00000528453.1_Missense_Mutation_p.R42W			Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel, subfamily M, member 5	42						integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			breast(1)|central_nervous_system(1)|endometrium(4)|liver(1)|lung(8)|ovary(2)|prostate(2)|skin(2)|urinary_tract(2)	23		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CTCGGCACCCGTACAAACTGC	0.672000													3	35					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77465361	77465361	+	Missense_Mutation	SNP	T	T	G			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr16:77465361T>G	ENST00000282849.5	-	3	744	c.326A>C	c.(325-327)cAc>cCc	p.H109P	ADAMTS18_ENST00000567121.1_5'UTR	NM_199355.2	NP_955387.1	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1 motif, 18	109					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			NS(1)|breast(5)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(3)|kidney(9)|large_intestine(26)|lung(44)|ovary(2)|pancreas(1)|prostate(1)|skin(19)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	118						AAGTTCTAAGTGCAGTTCCTG	0.483000													66	66					0	0	1	0	0
TNFSF14	0	broad.mit.edu	37	19	6665011	6665011	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr19:6665011C>T	ENST00000326176.9	-	5	922	c.541G>A	c.(541-543)Gtc>Atc	p.V181I	TNFSF14_ENST00000599359.1_Missense_Mutation_p.V217I|TNFSF14_ENST00000245912.3_Missense_Mutation_p.V181I	NM_003807.3|NM_172014.2	NP_003798.2|NP_742011.2	O43557	TNF14_HUMAN	tumor necrosis factor (ligand) superfamily, member 14	217					cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			breast(1)|kidney(2)|large_intestine(4)|liver(1)|lung(4)|ovary(1)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)	18						AGCACACGGACGACCACCTTC	0.622000													20	45					0	0	1	0	0
PHLDB1	23187	broad.mit.edu	37	11	118499188	118499188	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr11:118499188C>T	ENST00000361417.2	+	7	2060	c.1649C>T	c.(1648-1650)gCt>gTt	p.A550V	PHLDB1_ENST00000356063.5_Missense_Mutation_p.A550V	NM_015157.3	NP_055972.1	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B, member 1	550										breast(3)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(10)|liver(3)|lung(14)|ovary(2)|pancreas(1)|prostate(3)|skin(1)	46	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CTTACTGGGGCTTCACCCTGC	0.612000													5	8					0	0	1	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22898574	22898574	+	Missense_Mutation	SNP	T	T	G			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr10:22898574T>G	ENST00000376573.4	-	2	445	c.217A>C	c.(217-219)Aag>Cag	p.K73Q	PIP4K2A_ENST00000545335.1_Missense_Mutation_p.K14Q|PIP4K2A_ENST00000422321.1_5'UTR	NM_005028.4	NP_005019.2	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	73	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			endometrium(4)|kidney(13)|large_intestine(4)|lung(6)|ovary(1)|skin(1)	29						TTGTCCACCTTTATTTTTGAA	0.348000													34	28					0	0	1	0	0
GPR68	0	broad.mit.edu	37	14	91701320	91701320	+	Silent	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr14:91701320C>T	ENST00000535815.1	-	2	415	c.75G>A	c.(73-75)ccG>ccA	p.P25P	GPR68_ENST00000238699.3_Silent_p.P35P|GPR68_ENST00000531499.2_Silent_p.P25P	NM_001177676.1	NP_001171147.1	Q15743	OGR1_HUMAN	G protein-coupled receptor 68	25					inflammatory response	integral to plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)|endometrium(1)|kidney(1)|lung(2)|skin(1)|urinary_tract(1)	8		all_cancers(154;0.0555)		COAD - Colon adenocarcinoma(157;0.21)		CATAGACCACCGGGGCCAGCG	0.607000													12	19					0	0	1	0	0
LSMD1	84316	broad.mit.edu	37	17	7760097	7760097	+	Silent	SNP	A	A	G			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr17:7760097A>G	ENST00000333775.5	-	2	904	c.474T>C	c.(472-474)gtT>gtC	p.V158V	LSMD1_ENST00000576384.1_Silent_p.V68V|LSMD1_ENST00000576861.1_Silent_p.V84V|LSMD1_ENST00000335155.5_Silent_p.V110V|LSMD1_ENST00000575208.1_Silent_p.V58V|LSMD1_ENST00000575071.1_Silent_p.V68V|LSMD1_ENST00000575771.1_Silent_p.V58V	NM_032356.3	NP_115732.2	Q9BRA0	LSMD1_HUMAN	LSM domain containing 1	110						cytoplasm|nucleus				endometrium(1)|lung(2)|ovary(1)	4		all_cancers(10;0.11)|Prostate(122;0.219)				CCTCAATGGAAACGATGTGGT	0.562000											OREG0024146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	35					0	0	1	0	0
FAM65A	79567	broad.mit.edu	37	16	67575406	67575406	+	Missense_Mutation	SNP	C	C	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr16:67575406C>T	ENST00000540839.3	+	12	1155	c.935C>T	c.(934-936)gCc>gTc	p.A312V	FAM65A_ENST00000428437.2_Missense_Mutation_p.A306V|FAM65A_ENST00000042381.4_Missense_Mutation_p.A292V|FAM65A_ENST00000422602.2_Missense_Mutation_p.A312V|FAM65A_ENST00000379312.3_Missense_Mutation_p.A296V			Q6ZS17	FA65A_HUMAN	family with sequence similarity 65, member A	296						cytoplasm	binding			central_nervous_system(2)|endometrium(3)|kidney(2)|large_intestine(12)|lung(12)|ovary(2)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	39		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		GACCTGTTTGCCGCCCTGCCC	0.572000													4	157					0	0	1	0	0
PLCB2	5330	broad.mit.edu	37	15	40590425	40590425	+	Splice_Site	SNP	T	T	C			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr15:40590425T>C	ENST00000260402.3	-	11	1403	c.1154A>G	c.(1153-1155)aAa>aGa	p.K385R	PLCB2_ENST00000456256.2_Splice_Site_p.K385R|PLCB2_ENST00000557821.1_Splice_Site_p.K385R	NM_001284297.1|NM_004573.2	NP_001271226.1|NP_004564.2	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	385	PI-PLC X-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			NS(1)|breast(3)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(13)|ovary(4)|pancreas(1)|prostate(2)|upper_aerodigestive_tract(3)	39		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		GGGTCTCACTTTGAAGAAGAT	0.582000													12	7					0	0	1	0	0
AGAP10	728127	broad.mit.edu	37	10	47207813	47207813	+	Splice_Site	SNP	T	T	C			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr10:47207813T>C	ENST00000355232.3	-	5	3482	c.470A>G	c.(469-471)cAt>cGt	p.H157R	RP11-144G6.12_ENST00000605970.1_RNA|AGAP10_ENST00000452145.2_Splice_Site_p.H132R|AGAP10_ENST00000413193.2_Splice_Site_p.H228R					ArfGAP with GTPase domain, ankyrin repeat and PH domain 10									p.H228R(20)		endometrium(5)|kidney(3)|lung(1)|prostate(2)|urinary_tract(1)	12						TTTACTTACATGGTTTGTACA	0.294000													3	44					0	0	1	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19362817	19362817	+	Missense_Mutation	SNP	G	G	A			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr8:19362817G>A	ENST00000454498.2	-	4	1542	c.529C>T	c.(529-531)Cgg>Tgg	p.R177W	CSGALNACT1_ENST00000311540.4_Missense_Mutation_p.R177W|CSGALNACT1_ENST00000544602.1_Missense_Mutation_p.R177W|CSGALNACT1_ENST00000522854.1_Missense_Mutation_p.R177W|CSGALNACT1_ENST00000332246.6_Missense_Mutation_p.R177W	NM_001130518.1	NP_001123990.1	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate N-acetylgalactosaminyltransferase 1	177					anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			NS(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(4)|lung(15)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	31				Colorectal(111;0.182)		AACTCATCCCGCTTGTCCTTC	0.547000													10	35					0	0	1	0	0
CETP	1071	broad.mit.edu	37	16	56995983	56995983	+	Missense_Mutation	SNP	G	G	A	rs147758502	byFrequency	TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr16:56995983G>A	ENST00000200676.3	+	1	222	c.92G>A	c.(91-93)cGc>cAc	p.R31H	CETP_ENST00000379780.2_Missense_Mutation_p.R31H|CETP_ENST00000569082.1_3'UTR	NM_000078.2	NP_000069.2	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	31					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			NS(1)|breast(3)|central_nervous_system(1)|endometrium(3)|large_intestine(8)|lung(4)|skin(3)	23						ATCGTGTGCCGCATCACCAAG	0.612000													3	38					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135469898	135469898	+	Splice_Site	SNP	G	G	T			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chrX:135469898G>T	ENST00000394143.1	+	16	8067		c.e16-1		GPR112_ENST00000287534.4_Intron|GPR112_ENST00000394141.1_Splice_Site|GPR112_ENST00000370652.1_Splice_Site|GPR112_ENST00000412101.1_Splice_Site	NM_153834.3	NP_722576.3	Q8IZF6	GP112_HUMAN	G protein-coupled receptor 112						neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(2)|breast(13)|central_nervous_system(2)|cervix(3)|endometrium(17)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(33)|lung(97)|ovary(5)|pancreas(2)|prostate(4)|skin(10)|upper_aerodigestive_tract(1)|urinary_tract(2)	199	Acute lymphoblastic leukemia(192;0.000127)					TTTCTTGGCAGATTTTCCTAG	0.443000													38	2					1.62957e-23	1.75822e-23	1	1	0
PDE8B	8622	broad.mit.edu	37	5	76607856	76607856	+	Missense_Mutation	SNP	G	G	A			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr5:76607856G>A	ENST00000264917.5	+	2	422	c.377G>A	c.(376-378)aGa>aAa	p.R126K	PDE8B_ENST00000333194.4_Missense_Mutation_p.R126K|PDE8B_ENST00000346042.3_Missense_Mutation_p.R126K|PDE8B_ENST00000342343.4_Intron|PDE8B_ENST00000340978.3_Missense_Mutation_p.R126K	NM_003719.3	NP_003710.1	O95263	PDE8B_HUMAN	phosphodiesterase 8B	126					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity		GMDS/PDE8B(2)	NS(1)|autonomic_ganglia(2)|breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(10)|lung(15)|ovary(1)|prostate(2)|skin(3)	40		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		GGGCCCATGAGACTGACGCAG	0.433000													34	38					0	0	1	0	0
ZNF599	148103	broad.mit.edu	37	19	35250775	35250775	+	Missense_Mutation	SNP	A	A	C			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr19:35250775A>C	ENST00000329285.8	-	4	1304	c.931T>G	c.(931-933)Ttt>Gtt	p.F311V		NM_001007248.2	NP_001007249.1	Q96NL3	ZN599_HUMAN	zinc finger protein 599						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(3)|large_intestine(10)|lung(8)|ovary(1)|pancreas(1)|skin(1)	24	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TTGCATAAAAAGGGTTTTTCT	0.418000													29	52					0	0	1	0	0
LINC00570	0	broad.mit.edu	37	2	11542812	11542814	+	RNA	DEL	CCA	CCA	-			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr2:11542812_11542814delCCA	ENST00000417473.2	+	0	939_941					NR_047499.1																						gccatcaccgccaccaccaccac	0.586													3	3	---	---	---	---					
SP8	221833	broad.mit.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr7:20824941_20824943delGCC	ENST00000361443.4	-	3	676_678	c.439_441delGGC	c.(439-441)ggcdel	p.G147del	SP8_ENST00000418710.2_In_Frame_Del_p.G165del	NM_198956.2	NP_945194.1	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.G165delG(1)|p.G147delG(1)		NS(1)|central_nervous_system(1)|large_intestine(2)|lung(1)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	8						GCGCGGAGGAgccgccgccgccg	0.729													4	6	---	---	---	---					
HERC2P9	0	broad.mit.edu	37	15	28900331	28900331	+	RNA	DEL	A	A	-			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr15:28900331delA	ENST00000528584.1	+	0	14					NR_036443.1																						actctgtctcaaaaaaaaaaa	0.413													4	9	---	---	---	---					
hsa-mir-6080	0	broad.mit.edu	37	17	62750914	62750914	+	RNA	DEL	T	T	-			TCGA-V4-A9EJ-01A-11D-A39W-08	TCGA-V4-A9EJ-10A-01D-A39Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74ea8ce3-2e34-4978-9b9e-8696ffb954ca	3508b3dd-056e-4026-b3c3-742302289ca6	g.chr17:62750914delT	ENST00000400873.3	-	0	1841					NR_026899.1																						CTGATTATGCttttttttttg	0.433													3	6	---	---	---	---					
