Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ABCG8	64241	genome.wustl.edu	37	2	44101013	44101013	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	2	44101013	44101013	C	T	SNP	ABCG8	ENST00000272286	human	ensembl	70_37	+1	known	silent	c.1299	p.F433	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC
AHNAK2	113146	genome.wustl.edu	37	14	105420220	105420220	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	14	105420220	105420220	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	70_37	-1	known	missense	c.1568	p.A523V	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC
AMBRA1	55626	genome.wustl.edu	37	11	46430214	46430214	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	46430214	46430214	C	T	SNP	AMBRA1	ENST00000458649	human	ensembl	70_37	-1	known	silent	c.3252	p.L1084	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC
AMD1	262	genome.wustl.edu	37	6	111211525	111211525	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	6	111211525	111211525	G	T	SNP	AMD1	ENST00000368885	human	ensembl	70_37	+1	known	missense	c.393	p.Q131H	1.000	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	-	no_errors	AMD1	HGNC
AOX2P	344454	genome.wustl.edu	37	2	201607053	201607053	+	RNA	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	2	201607053	201607053	C	T	SNP	AOX2P	ENST00000472376	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.688	-	-	-	no_errors	AOX2P	HGNC
APLP2	334	genome.wustl.edu	37	11	130005463	130005463	+	Missense_Mutation	SNP	C	C	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	130005463	130005463	C	A	SNP	APLP2	ENST00000263574	human	ensembl	70_37	+1	known	missense	c.1690	p.L564I	0.979	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC
ARMCX4	100131755	genome.wustl.edu	37	X	100745979	100745979	+	Silent	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	100745979	100745979	G	A	SNP	ARMCX4	ENST00000423738	human	ensembl	70_37	+1	putative	silent	c.2403	p.L801	0.128	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX4	HGNC
ASXL1	171023	genome.wustl.edu	37	20	31024506	31024506	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	20	31024506	31024506	C	T	SNP	ASXL1	ENST00000375687	human	ensembl	70_37	+1	known	missense	c.3991	p.P1331S	0.996	NULL	NULL	-	no_errors	ASXL1	HGNC
C1orf85	112770	genome.wustl.edu	37	1	156264186	156264186	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	156264186	156264186	C	T	SNP	C1orf85	ENST00000362007	human	ensembl	70_37	-1	known	silent	c.549	p.R183	0.054	NULL	NULL	-	no_errors	C1orf85	HGNC
C6orf70	55780	genome.wustl.edu	37	6	170176052	170176052	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	6	170176052	170176052	G	A	SNP	C6orf70	ENST00000366773	human	ensembl	70_37	+1	known	missense	c.1411	p.E471K	0.583	NULL	NULL	-	no_errors	C6orf70	HGNC
CNR2	1269	genome.wustl.edu	37	1	24201626	24201626	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	24201626	24201626	G	A	SNP	CNR2	ENST00000374472	human	ensembl	70_37	-1	known	missense	c.482	p.S161L	0.756	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_2,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR2	HGNC
CROCCP2	84809	genome.wustl.edu	37	1	16956946	16956946	+	RNA	SNP	C	C	G			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	16956946	16956946	C	G	SNP	CROCCP2	ENST00000362058	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	CROCCP2	HGNC
CTSW	1521	genome.wustl.edu	37	11	65650281	65650281	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	65650281	65650281	C	T	SNP	CTSW	ENST00000307886	human	ensembl	70_37	+1	known	silent	c.651	p.F217	0.818	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC
CXCR2P1	3580	genome.wustl.edu	37	2	218925822	218925822	+	RNA	SNP	G	G	C			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	2	218925822	218925822	G	C	SNP	CXCR2P1	ENST00000439871	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CXCR2P1	HGNC
CXorf57	55086	genome.wustl.edu	37	X	105905424	105905424	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	105905424	105905424	G	A	SNP	CXorf57	ENST00000372548	human	ensembl	70_37	+1	known	missense	c.2158	p.D720N	0.066	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC
DEGS2	123099	genome.wustl.edu	37	14	100615443	100615443	+	Silent	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	14	100615443	100615443	G	A	SNP	DEGS2	ENST00000305631	human	ensembl	70_37	-1	known	silent	c.687	p.F229	0.994	pfam_Fatty_acid_desaturase-1,pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS2	HGNC
DICER1	23405	genome.wustl.edu	37	14	95574781	95574781	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	14	95574781	95574781	C	T	SNP	DICER1	ENST00000343455	human	ensembl	70_37	-1	known	silent	c.2316	p.V772	1.000	NULL	pfam_RNase_III_dom,pfam_PAZ,pfam_Dicer_dsRNA_binding_fold,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_PAZ,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_PAZ,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC
DMRT1	1761	genome.wustl.edu	37	9	916849	916849	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	9	916849	916849	C	T	SNP	DMRT1	ENST00000382276	human	ensembl	70_37	+1	known	silent	c.909	p.S303	0.066	NULL	pfam_DM_DNA-bd,pfam_DMRT1-like,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT1	HGNC
ENSG00000216166	0	genome.wustl.edu	37	3	183520323	183520324	+	RNA	INS	-	-	TA			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	3	183520323	183520324	-	TA	INS	ENSG00000216166	ENST00000401347	human	ensembl	70_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC131160.1	Clone_based_ensembl_gene
ENSG00000222408	0	genome.wustl.edu	37	9	90359854	90359854	+	RNA	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	9	90359854	90359854	G	A	SNP	ENSG00000222408	ENST00000410476	human	ensembl	70_37	-1	novel	rna	NULL	NULL	0.172	-	-	-	no_errors	AL160279.1	Clone_based_ensembl_gene
ENSG00000235118	0	genome.wustl.edu	37	2	207513559	207513560	+	RNA	INS	-	-	AT			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	2	207513559	207513560	-	AT	INS	ENSG00000235118	ENST00000441223	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC010731.4	Clone_based_vega_gene
ENSG00000235330	0	genome.wustl.edu	37	9	478095	478095	+	RNA	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	9	478095	478095	G	A	SNP	ENSG00000235330	ENST00000598100	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	RP11-165F24.2	Clone_based_vega_gene
ENSG00000235381	0	genome.wustl.edu	37	6	155575538	155575539	+	RNA	INS	-	-	C			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	6	155575538	155575539	-	C	INS	ENSG00000235381	ENST00000435295	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-477D19.2	Clone_based_vega_gene
ENSG00000259660	0	genome.wustl.edu	37	15	102299805	102299805	+	RNA	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	15	102299805	102299805	G	A	SNP	ENSG00000259660	ENST00000561463	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.710	-	-	-	no_errors	CTD-2611K5.6	Clone_based_vega_gene
FAM162B	221303	genome.wustl.edu	37	6	117083213	117083213	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	6	117083213	117083213	C	T	SNP	FAM162B	ENST00000368557	human	ensembl	70_37	-1	known	missense	c.317	p.R106Q	0.991	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162B	HGNC
FAM47A	158724	genome.wustl.edu	37	X	34149765	34149765	+	Silent	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	34149765	34149765	G	A	SNP	FAM47A	ENST00000346193	human	ensembl	70_37	-1	known	silent	c.631	p.L211	0.001	NULL	NULL	-	no_errors	FAM47A	HGNC
FBRS	64319	genome.wustl.edu	37	16	30680445	30680445	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	16	30680445	30680445	C	T	SNP	FBRS	ENST00000356166	human	ensembl	70_37	+1	known	missense	c.2422	p.R808W	0.998	NULL	prints_AUTS2	-	no_errors	FBRS	HGNC
FCGBP	8857	genome.wustl.edu	37	19	40382452	40382452	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	19	40382452	40382452	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	70_37	-1	known	silent	c.10434	p.A3478	0.003	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC
FEN1	2237	genome.wustl.edu	37	11	61563301	61563301	+	Silent	SNP	C	C	G			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	61563301	61563301	C	G	SNP	FEN1	ENST00000305885	human	ensembl	70_37	+1	known	silent	c.468	p.P156	1.000	pfam_XPG/RAD2_endonuclease,smart_XPG/RAD2_endonuclease,prints_XPGC_Rad_DNA_repair	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_Rad_DNA_repair	-	no_errors	FEN1	HGNC
FMO5	2330	genome.wustl.edu	37	1	146672991	146672991	+	Missense_Mutation	SNP	T	T	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	146672991	146672991	T	A	SNP	FMO5	ENST00000254090	human	ensembl	70_37	-1	known	missense	c.926	p.E309V	1.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC
FOLH1	2346	genome.wustl.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	70_37	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC
FRG2B	441581	genome.wustl.edu	37	10	135439803	135439803	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	10	135439803	135439803	C	T	SNP	FRG2B	ENST00000443774	human	ensembl	70_37	-1	known	silent	c.186	p.S62	0.213	NULL	NULL	-	no_errors	FRG2B	HGNC
GBAP1	2630	genome.wustl.edu	37	1	155185426	155185426	+	RNA	SNP	G	G	C			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	155185426	155185426	G	C	SNP	GBAP1	ENST00000368374	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GBAP1	HGNC
COLGALT2	23127	genome.wustl.edu	37	1	183947545	183947545	+	Nonsense_Mutation	SNP	C	C	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	183947545	183947545	C	A	SNP	GLT25D2	ENST00000361927	human	ensembl	70_37	-1	known	nonsense	c.373	p.E125*	0.496	NULL	pfam_Glyco_trans_25	-	no_errors	GLT25D2	HGNC
GNAT3	346562	genome.wustl.edu	37	7	80103615	80103615	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	7	80103615	80103615	G	A	SNP	GNAT3	ENST00000398291	human	ensembl	70_37	-1	known	missense	c.542	p.T181M	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT3	HGNC
GPR139	124274	genome.wustl.edu	37	16	20043656	20043656	+	Missense_Mutation	SNP	T	T	C			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	16	20043656	20043656	T	C	SNP	GPR139	ENST00000570682	human	ensembl	70_37	-1	known	missense	c.463	p.T155A	0.991	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR139	HGNC
GUCY1A2	2977	genome.wustl.edu	37	11	106856836	106856836	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	106856836	106856836	G	A	SNP	GUCY1A2	ENST00000282249	human	ensembl	70_37	-1	known	missense	c.325	p.L109F	1.000	NULL	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC
HDHD1	8226	genome.wustl.edu	37	X	6995415	6995415	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	6995415	6995415	G	A	SNP	HDHD1	ENST00000424830	human	ensembl	70_37	-1	known	missense	c.425	p.S142L	0.413	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA_v3	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	HDHD1	HGNC
HFM1	164045	genome.wustl.edu	37	1	91859873	91859873	+	Nonsense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	91859873	91859873	G	A	SNP	HFM1	ENST00000370425	human	ensembl	70_37	-1	known	nonsense	c.271	p.Q91*	0.303	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC
HMGB1P5	10354	genome.wustl.edu	37	3	22424366	22424366	+	RNA	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	3	22424366	22424366	G	T	SNP	HMGB1P5	ENST00000451497	human	ensembl	70_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC
IFNG	3458	genome.wustl.edu	37	12	68553365	68553365	+	Missense_Mutation	SNP	G	G	C			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	12	68553365	68553365	G	C	SNP	IFNG	ENST00000229135	human	ensembl	70_37	-1	known	missense	c.31	p.Q11E	0.715	pirsf_Interferon_gamma	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	-	no_errors	IFNG	HGNC
KCNT2	343450	genome.wustl.edu	37	1	196295846	196295846	+	Splice_Site	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	196295846	196295846	C	T	SNP	KCNT2	ENST00000294725	human	ensembl	70_37	-1	known	splice_site	c.2276+1	e19+1	1.000	-	-	-	no_errors	KCNT2	HGNC
KHDC1	80759	genome.wustl.edu	37	6	73951257	73951257	+	Missense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	6	73951257	73951257	G	A	SNP	KHDC1	ENST00000257765	human	ensembl	70_37	-1	known	missense	c.490	p.P164S	0.000	NULL	NULL	-	no_errors	KHDC1	HGNC
KIF4A	24137	genome.wustl.edu	37	X	69615617	69615617	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	69615617	69615617	G	T	SNP	KIF4A	ENST00000374403	human	ensembl	70_37	+1	known	missense	c.2329	p.D777Y	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC
KIFC3	3801	genome.wustl.edu	37	16	57795349	57795349	+	Silent	SNP	C	C	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	16	57795349	57795349	C	A	SNP	KIFC3	ENST00000379655	human	ensembl	70_37	-1	known	silent	c.1848	p.V616	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC
KSR2	283455	genome.wustl.edu	37	12	118298123	118298123	+	Silent	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	12	118298123	118298123	G	A	SNP	KSR2	ENST00000339824	human	ensembl	70_37	-1	known	silent	c.294	p.I98	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	KSR2	HGNC
LAMC2	3918	genome.wustl.edu	37	1	183177044	183177044	+	Missense_Mutation	SNP	G	G	C			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	183177044	183177044	G	C	SNP	LAMC2	ENST00000264144	human	ensembl	70_37	+1	known	missense	c.108	p.Q36H	0.996	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC
LONP2	83752	genome.wustl.edu	37	16	48385539	48385539	+	Silent	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	16	48385539	48385539	G	A	SNP	LONP2	ENST00000285737	human	ensembl	70_37	+1	known	silent	c.2385	p.L795	1.000	pfam_Pept_S16_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_Pept_S16_lon	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Pept_S16_lon	-	no_errors	LONP2	HGNC
LONRF1	91694	genome.wustl.edu	37	8	12594605	12594605	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	8	12594605	12594605	G	T	SNP	LONRF1	ENST00000398246	human	ensembl	70_37	-1	known	missense	c.1158	p.S386R	0.992	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC
MAML2	84441	genome.wustl.edu	37	11	95826265	95826265	+	Silent	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	95826265	95826265	G	A	SNP	MAML2	ENST00000440572	human	ensembl	70_37	-1	known	silent	c.930	p.F310	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC
NKX2-2	4821	genome.wustl.edu	37	20	21492910	21492910	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	20	21492910	21492910	C	T	SNP	NKX2-2	ENST00000377142	human	ensembl	70_37	-1	known	missense	c.473	p.R158H	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC
NSDHL	50814	genome.wustl.edu	37	X	152018902	152018902	+	Missense_Mutation	SNP	G	G	C			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	152018902	152018902	G	C	SNP	NSDHL	ENST00000370274	human	ensembl	70_37	+1	known	missense	c.202	p.D68H	1.000	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_NmrA	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC
OR2G2	81470	genome.wustl.edu	37	1	247752483	247752483	+	Silent	SNP	C	C	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	247752483	247752483	C	A	SNP	OR2G2	ENST00000320065	human	ensembl	70_37	+1	known	silent	c.822	p.G274	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC
PCDHA1	56147	genome.wustl.edu	37	5	140165938	140165938	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	5	140165938	140165938	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	70_37	+1	known	silent	c.63	p.L21	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC
PIK3CG	5294	genome.wustl.edu	37	7	106508173	106508173	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	7	106508173	106508173	C	T	SNP	PIK3CG	ENST00000359195	human	ensembl	70_37	+1	known	missense	c.167	p.T56M	0.380	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC
PKD2L1	9033	genome.wustl.edu	37	10	102051081	102051081	+	Nonsense_Mutation	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	10	102051081	102051081	G	A	SNP	PKD2L1	ENST00000318222	human	ensembl	70_37	-1	known	nonsense	c.1984	p.R662*	0.876	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC
PKHD1	5314	genome.wustl.edu	37	6	51732836	51732836	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	6	51732836	51732836	G	T	SNP	PKHD1	ENST00000371117	human	ensembl	70_37	-1	known	missense	c.7558	p.H2520N	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC
PKHD1	5314	genome.wustl.edu	37	6	51799070	51799070	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	6	51799070	51799070	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	70_37	-1	known	missense	c.5959	p.A1987T	0.076	pfam_G8_domain	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC
PLXNA2	5362	genome.wustl.edu	37	1	208199993	208199994	+	RNA	INS	-	-	TC			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	208199993	208199994	-	TC	INS	PLXNA2	ENST00000483048	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PLXNA2	HGNC
POLM	27434	genome.wustl.edu	37	7	44113615	44113615	+	Frame_Shift_Del	DEL	G	G	-			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	7	44113615	44113615	G	-	DEL	POLM	ENST00000242248	human	ensembl	70_37	-1	known	frame_shift_del	c.1081	p.L361fs	0.999	smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC
POU6F2	11281	genome.wustl.edu	37	7	39472873	39472873	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	7	39472873	39472873	C	T	SNP	POU6F2	ENST00000403058	human	ensembl	70_37	+1	known	silent	c.1224	p.P408	0.991	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC
RBM25	58517	genome.wustl.edu	37	14	73572954	73572954	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	14	73572954	73572954	G	T	SNP	RBM25	ENST00000261973	human	ensembl	70_37	+1	known	missense	c.1428	p.E476D	0.997	NULL	pfam_PWI,pfam_RRM_dom,superfamily_PWI,smart_RRM_dom,smart_PWI,pfscan_RRM_dom	-	no_errors	RBM25	HGNC
SCARF1	8578	genome.wustl.edu	37	17	1543025	1543025	+	Missense_Mutation	SNP	G	G	C			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	17	1543025	1543025	G	C	SNP	SCARF1	ENST00000263071	human	ensembl	70_37	-1	known	missense	c.1151	p.S384C	0.999	superfamily_Growth_fac_rcpt,smart_EG-like_dom	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF1	HGNC
SERPINB11	89778	genome.wustl.edu	37	18	61390407	61390407	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	18	61390407	61390407	C	T	SNP	SERPINB11	ENST00000536691	human	ensembl	70_37	+1	known	missense	c.428	p.S143F	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB11	HGNC
SFMBT1	51460	genome.wustl.edu	37	3	53003241	53003241	+	RNA	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	3	53003241	53003241	G	A	SNP	SFMBT1	ENST00000470575	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.335	-	-	-	no_errors	SFMBT1	HGNC
SFTPC	6440	genome.wustl.edu	37	8	22021029	22021029	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	8	22021029	22021029	G	T	SNP	SFTPC	ENST00000318561	human	ensembl	70_37	+1	known	missense	c.405	p.E135D	0.980	pfam_BRICHOS_dom,smart_Pulm_surfact_AP,pfscan_BRICHOS_dom	pfam_Surfactant_protein_propep,pfam_BRICHOS_dom,smart_Pulm_surfact_AP,pfscan_BRICHOS_dom	-	no_errors	SFTPC	HGNC
SFTPC	6440	genome.wustl.edu	37	8	22021506	22021506	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	8	22021506	22021506	C	T	SNP	SFTPC	ENST00000318561	human	ensembl	70_37	+1	known	silent	c.546	p.G182	0.843	pfam_BRICHOS_dom,smart_Pulm_surfact_AP,pfscan_BRICHOS_dom	pfam_Surfactant_protein_propep,pfam_BRICHOS_dom,smart_Pulm_surfact_AP,pfscan_BRICHOS_dom	-	no_errors	SFTPC	HGNC
SLC22A10	387775	genome.wustl.edu	37	11	63072233	63072233	+	Silent	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	63072233	63072233	G	T	SNP	SLC22A10	ENST00000332793	human	ensembl	70_37	+1	known	silent	c.1470	p.T490	0.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC
SLITRK1	114798	genome.wustl.edu	37	13	84454533	84454533	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	13	84454533	84454533	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	70_37	-1	known	silent	c.1110	p.L370	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC
SLITRK3	22865	genome.wustl.edu	37	3	164906468	164906468	+	Silent	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	3	164906468	164906468	G	A	SNP	SLITRK3	ENST00000241274	human	ensembl	70_37	-1	known	silent	c.2151	p.G717	0.570	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC
SPTBN2	6712	genome.wustl.edu	37	11	66472250	66472250	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	11	66472250	66472250	G	T	SNP	SPTBN2	ENST00000309996	human	ensembl	70_37	-1	known	missense	c.2497	p.H833N	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC
SRPX	8406	genome.wustl.edu	37	X	38031228	38031228	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	38031228	38031228	C	T	SNP	SRPX	ENST00000378533	human	ensembl	70_37	-1	known	silent	c.432	p.E144	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX	HGNC
TBX22	50945	genome.wustl.edu	37	X	79279576	79279576	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	79279576	79279576	C	T	SNP	TBX22	ENST00000373294	human	ensembl	70_37	+1	known	missense	c.371	p.S124F	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX22	HGNC
TESC	54997	genome.wustl.edu	37	12	117479757	117479757	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	12	117479757	117479757	G	T	SNP	TESC	ENST00000392545	human	ensembl	70_37	-1	known	missense	c.721	p.L241M	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TESC	HGNC
TLN1	7094	genome.wustl.edu	37	9	35713251	35713251	+	Silent	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	9	35713251	35713251	C	T	SNP	TLN1	ENST00000314888	human	ensembl	70_37	-1	known	silent	c.3294	p.V1098	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC
TNRC18	84629	genome.wustl.edu	37	7	5360020	5360020	+	Missense_Mutation	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	7	5360020	5360020	G	T	SNP	TNRC18	ENST00000399537	human	ensembl	70_37	-1	known	missense	c.6674	p.P2225Q	0.999	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC
TOPAZ1	375337	genome.wustl.edu	37	3	44285827	44285827	+	Missense_Mutation	SNP	C	C	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	3	44285827	44285827	C	A	SNP	TOPAZ1	ENST00000309765	human	ensembl	70_37	+1	known	missense	c.1829	p.S610Y	0.920	NULL	NULL	-	no_errors	TOPAZ1	HGNC
TP73	7161	genome.wustl.edu	37	1	3639969	3639969	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	1	3639969	3639969	C	T	SNP	TP73	ENST00000378295	human	ensembl	70_37	+1	known	missense	c.668	p.S223L	0.369	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP73	HGNC
TRIM37	4591	genome.wustl.edu	37	17	57106026	57106026	+	Silent	SNP	G	G	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	17	57106026	57106026	G	T	SNP	TRIM37	ENST00000262294	human	ensembl	70_37	-1	known	silent	c.2007	p.P669	0.997	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC
TRPM1	4308	genome.wustl.edu	37	15	31295003	31295003	+	Silent	SNP	G	G	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	15	31295003	31295003	G	A	SNP	TRPM1	ENST00000542188	human	ensembl	70_37	-1	known	silent	c.3951	p.N1317	0.024	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC
TRPM6	140803	genome.wustl.edu	37	9	77378029	77378029	+	Missense_Mutation	SNP	C	C	A			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	9	77378029	77378029	C	A	SNP	TRPM6	ENST00000451710	human	ensembl	70_37	-1	known	missense	c.3558	p.Q1186H	0.915	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC
TTC30A	92104	genome.wustl.edu	37	2	178483126	178483126	+	Missense_Mutation	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	2	178483126	178483126	C	T	SNP	TTC30A	ENST00000355689	human	ensembl	70_37	-1	known	missense	c.304	p.A102T	0.897	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30A	HGNC
USP6NL	9712	genome.wustl.edu	37	10	11567450	11567450	+	Missense_Mutation	SNP	C	C	G			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	10	11567450	11567450	C	G	SNP	USP6NL	ENST00000277575	human	ensembl	70_37	-1	known	missense	c.141	p.E47D	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC
WDR13	64743	genome.wustl.edu	37	X	48462649	48462649	+	RNA	SNP	C	C	T			TCGA-C5-A2LS-01A-22D-A22X-09	TCGA-C5-A2LS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	27dabab2-d65a-41c4-995a-f2c9b7adf441	64058b60-93c9-418c-823e-77e4bcde4034	X	48462649	48462649	C	T	SNP	WDR13	ENST00000492873	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDR13	HGNC
