Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
AKAP8	10270	genome.wustl.edu	37	19	15484149	15484149	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	19	15484149	15484149	G	A	SNP	AKAP8	ENST00000269701	human	ensembl	70_37	-1	known	missense	c.374	p.S125F	1.000	NULL	pfam_AKAP95	-	no_errors	AKAP8	HGNC
ATP13A4	84239	genome.wustl.edu	37	3	193210717	193210717	+	Silent	SNP	T	T	C			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	3	193210717	193210717	T	C	SNP	ATP13A4	ENST00000342695	human	ensembl	70_37	-1	known	silent	c.522	p.E174	0.999	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A4	HGNC
C2orf71	388939	genome.wustl.edu	37	2	29294044	29294044	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	2	29294044	29294044	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	70_37	-1	novel	silent	c.3084	p.T1028	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC
CACNA1H	8912	genome.wustl.edu	37	16	1246002	1246002	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	16	1246002	1246002	C	T	SNP	CACNA1H	ENST00000348261	human	ensembl	70_37	+1	known	missense	c.622	p.R208C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC
CCDC86	79080	genome.wustl.edu	37	11	60610305	60610305	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	11	60610305	60610305	G	A	SNP	CCDC86	ENST00000227520	human	ensembl	70_37	+1	known	silent	c.708	p.P236	0.012	NULL	NULL	-	no_errors	CCDC86	HGNC
CDH11	1009	genome.wustl.edu	37	16	65006813	65006813	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	16	65006813	65006813	C	T	SNP	CDH11	ENST00000268603	human	ensembl	70_37	-1	known	missense	c.1384	p.E462K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC
CDH23	64072	genome.wustl.edu	37	10	73569598	73569598	+	Missense_Mutation	SNP	G	G	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	10	73569598	73569598	G	T	SNP	CDH23	ENST00000224721	human	ensembl	70_37	+1	known	missense	c.8753	p.R2918L	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC
CDX2	1045	genome.wustl.edu	37	13	28542887	28542887	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	13	28542887	28542887	G	A	SNP	CDX2	ENST00000381020	human	ensembl	70_37	-1	known	missense	c.257	p.A86V	0.075	pfam_Caudal_activation_dom	pfam_Caudal_activation_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX2	HGNC
CHD7	55636	genome.wustl.edu	37	8	61693596	61693596	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	8	61693596	61693596	C	T	SNP	CHD7	ENST00000307121	human	ensembl	70_37	+1	known	missense	c.1703	p.P568L	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC
CHST3	9469	genome.wustl.edu	37	10	73768164	73768164	+	Missense_Mutation	SNP	G	G	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	10	73768164	73768164	G	T	SNP	CHST3	ENST00000373115	human	ensembl	70_37	+1	known	missense	c.1375	p.A459S	0.031	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC
CLK2	1196	genome.wustl.edu	37	1	155239279	155239279	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	155239279	155239279	C	T	SNP	CLK2	ENST00000368361	human	ensembl	70_37	-1	known	silent	c.399	p.S133	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC
CMYA5	202333	genome.wustl.edu	37	5	79025497	79025497	+	Missense_Mutation	SNP	G	G	C			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	5	79025497	79025497	G	C	SNP	CMYA5	ENST00000446378	human	ensembl	70_37	+1	known	missense	c.909	p.W303C	0.999	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC
COL15A1	1306	genome.wustl.edu	37	9	101832135	101832135	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	101832135	101832135	C	T	SNP	COL15A1	ENST00000375001	human	ensembl	70_37	+1	known	silent	c.4134	p.I1378	0.912	pfam_Collagenase_NC10/endostatin,superfamily_C-type_lectin_fold	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC
COL5A1	1289	genome.wustl.edu	37	9	137706730	137706730	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	137706730	137706730	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	70_37	+1	known	missense	c.3994	p.D1332N	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC
CREBZF	58487	genome.wustl.edu	37	11	85375525	85375525	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	11	85375525	85375525	G	A	SNP	CREBZF	ENST00000525639	human	ensembl	70_37	-1	known	missense	c.395	p.S132L	1.000	NULL	pfam_bZIP	-	no_errors	CREBZF	HGNC
CRTAC1	55118	genome.wustl.edu	37	10	99770902	99770902	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	10	99770902	99770902	C	T	SNP	CRTAC1	ENST00000370597	human	ensembl	70_37	-1	known	missense	c.217	p.V73M	1.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd	-	no_errors	CRTAC1	HGNC
CSMD3	114788	genome.wustl.edu	37	8	113317096	113317096	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	8	113317096	113317096	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	70_37	-1	known	nonsense	c.8120	p.W2707*	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC
CTSK	1513	genome.wustl.edu	37	1	150772083	150772083	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	150772083	150772083	G	A	SNP	CTSK	ENST00000271651	human	ensembl	70_37	-1	known	nonsense	c.721	p.R241*	0.249	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,pfam_Peptidase_C1B,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSK	HGNC
CXCR4	7852	genome.wustl.edu	37	2	136872366	136872366	+	RNA	SNP	C	C	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	2	136872366	136872366	C	A	SNP	CXCR4	ENST00000466288	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXCR4	HGNC
CYP26C1	340665	genome.wustl.edu	37	10	94828206	94828206	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	10	94828206	94828206	C	T	SNP	CYP26C1	ENST00000285949	human	ensembl	70_37	+1	known	missense	c.1321	p.R441W	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP26C1	HGNC
CYP4F2	8529	genome.wustl.edu	37	19	16000293	16000293	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	19	16000293	16000293	G	A	SNP	CYP4F2	ENST00000221700	human	ensembl	70_37	-1	known	silent	c.858	p.F286	0.221	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC
CYR61	3491	genome.wustl.edu	37	1	86048260	86048260	+	Missense_Mutation	SNP	A	A	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	86048260	86048260	A	T	SNP	CYR61	ENST00000451137	human	ensembl	70_37	+1	known	missense	c.796	p.I266F	0.994	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CYR61	HGNC
DCBLD2	131566	genome.wustl.edu	37	3	98518644	98518644	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	3	98518644	98518644	G	A	SNP	DCBLD2	ENST00000326857	human	ensembl	70_37	-1	known	missense	c.1942	p.H648Y	1.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB,superfamily_LCCL,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC
DGKI	9162	genome.wustl.edu	37	7	137148328	137148328	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	7	137148328	137148328	C	T	SNP	DGKI	ENST00000424189	human	ensembl	70_37	-1	known	missense	c.2675	p.R892Q	0.999	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC
DLEC1	9940	genome.wustl.edu	37	3	38158718	38158718	+	Missense_Mutation	SNP	G	G	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	3	38158718	38158718	G	T	SNP	DLEC1	ENST00000346219	human	ensembl	70_37	+1	known	missense	c.4325	p.G1442V	0.984	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC
DSPP	1834	genome.wustl.edu	37	4	88537225	88537225	+	Missense_Mutation	SNP	C	C	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	4	88537225	88537225	C	A	SNP	DSPP	ENST00000282478	human	ensembl	70_37	+1	known	missense	c.3411	p.D1137E	0.941	NULL	NULL	-	no_errors	DSPP	HGNC
EGFL7	51162	genome.wustl.edu	37	9	139564113	139564113	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	139564113	139564113	C	T	SNP	EGFL7	ENST00000308874	human	ensembl	70_37	+1	known	missense	c.253	p.R85C	0.674	pfam_EMI_domain,pfscan_EMI_domain	pfam_EMI_domain,pfam_EGF-like_Ca-bd,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	EGFL7	HGNC
ENSG00000182356	0	genome.wustl.edu	37	22	18835754	18835754	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	22	18835754	18835754	G	A	SNP	ENSG00000182356	ENST00000427789	human	ensembl	70_37	+1	known	missense	c.1310	p.R437H	0.003	NULL	NULL	-	no_errors	AC008132.13	Clone_based_vega_gene
ENSG00000210194	0	genome.wustl.edu	37	MT	14705	14705	+	RNA	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	MT	14705	14705	G	A	SNP	ENSG00000210194	ENST00000387459	human	ensembl	70_37	-1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.20	Clone_based_ensembl_gene
ENSG00000225411	0	genome.wustl.edu	37	9	68400475	68400475	+	RNA	SNP	T	T	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	68400475	68400475	T	G	SNP	ENSG00000225411	ENST00000417843	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene
ENSG00000225411	0	genome.wustl.edu	37	9	68400511	68400511	+	RNA	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	68400511	68400511	G	A	SNP	ENSG00000225411	ENST00000417843	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene
ENSG00000230092	0	genome.wustl.edu	37	1	741258	741258	+	RNA	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	741258	741258	C	T	SNP	ENSG00000230092	ENST00000447500	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-206L10.8	Clone_based_vega_gene
ENSG00000241769	0	genome.wustl.edu	37	X	148615669	148615669	+	RNA	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	X	148615669	148615669	C	T	SNP	ENSG00000241769	ENST00000431214	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AF011889.4	Clone_based_vega_gene
ENSG00000243273	0	genome.wustl.edu	37	3	150608642	150608642	+	RNA	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	3	150608642	150608642	C	T	SNP	ENSG00000243273	ENST00000469268	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-166N6.2	Clone_based_vega_gene
ENSG00000260628	0	genome.wustl.edu	37	16	31993404	31993404	+	RNA	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	16	31993404	31993404	G	A	SNP	ENSG00000260628	ENST00000568570	human	ensembl	70_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-1166P10.1	Clone_based_vega_gene
EPB41	2035	genome.wustl.edu	37	1	29379717	29379717	+	Nonsense_Mutation	SNP	A	A	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	29379717	29379717	A	T	SNP	EPB41	ENST00000343067	human	ensembl	70_37	+1	known	nonsense	c.1738	p.K580*	0.796	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41	HGNC
ERN1	2081	genome.wustl.edu	37	17	62149426	62149426	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	17	62149426	62149426	C	T	SNP	ERN1	ENST00000433197	human	ensembl	70_37	-1	known	silent	c.393	p.L131	1.000	superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC
ERN1	2081	genome.wustl.edu	37	17	62152586	62152586	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	17	62152586	62152586	C	T	SNP	ERN1	ENST00000433197	human	ensembl	70_37	-1	known	missense	c.304	p.E102K	1.000	superfamily_Quinonprotein_ADH-like	pfam_Prot_kinase_cat_dom,pfam_KEN_RNase_activator,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN1	HGNC
ESPN	83715	genome.wustl.edu	37	1	6520730	6520730	+	RNA	SNP	C	C	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	6520730	6520730	C	G	SNP	ESPN	ENST00000468561	human	ensembl	70_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ESPN	HGNC
ESPN	83715	genome.wustl.edu	37	1	6521027	6521027	+	RNA	SNP	C	C	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	6521027	6521027	C	G	SNP	ESPN	ENST00000468561	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.118	-	-	-	no_errors	ESPN	HGNC
EVC2	132884	genome.wustl.edu	37	4	5624288	5624288	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	4	5624288	5624288	C	T	SNP	EVC2	ENST00000344408	human	ensembl	70_37	-1	known	missense	c.2477	p.R826Q	0.925	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC
F11	2160	genome.wustl.edu	37	4	187201212	187201212	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	4	187201212	187201212	C	T	SNP	F11	ENST00000403665	human	ensembl	70_37	+1	known	missense	c.802	p.R268C	0.075	pfam_PAN-1_domain,smart_Apple,pfscan_Pan_app,prints_Apple	pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,smart_Apple,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Peptidase_S1_S6,prints_Apple,prints_Peptidase_S1A	-	no_errors	F11	HGNC
FAM96A	84191	genome.wustl.edu	37	15	64385878	64385878	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	15	64385878	64385878	G	A	SNP	FAM96A	ENST00000300030	human	ensembl	70_37	-1	known	silent	c.90	p.P30	1.000	NULL	pfam_DUF59	-	no_errors	FAM96A	HGNC
FBXW7	55294	genome.wustl.edu	37	4	153251907	153251907	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	4	153251907	153251907	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	70_37	-1	known	nonsense	c.1099	p.R367*	1.000	superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC
FOXD4L5	653427	genome.wustl.edu	37	9	70176944	70176944	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	70176944	70176944	C	T	SNP	FOXD4L5	ENST00000377420	human	ensembl	70_37	-1	known	missense	c.1040	p.R347Q	0.009	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC
GAK	2580	genome.wustl.edu	37	4	870335	870335	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	4	870335	870335	G	A	SNP	GAK	ENST00000314167	human	ensembl	70_37	-1	known	silent	c.2037	p.T679	0.743	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tensin_phosphatase_C2-dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_N,superfamily_Kinase-like_dom,superfamily_DnaJ_N,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_N,pfscan_Prot_kinase_cat_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_N	-	no_errors	GAK	HGNC
GDF5	8200	genome.wustl.edu	37	20	34022246	34022246	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	20	34022246	34022246	C	T	SNP	GDF5	ENST00000374369	human	ensembl	70_37	-1	known	missense	c.967	p.D323N	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC
GJD2	57369	genome.wustl.edu	37	15	35045326	35045326	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	15	35045326	35045326	G	A	SNP	GJD2	ENST00000290374	human	ensembl	70_37	-1	known	missense	c.319	p.R107C	1.000	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC
GPLD1	2822	genome.wustl.edu	37	6	24447152	24447152	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	6	24447152	24447152	G	A	SNP	GPLD1	ENST00000230036	human	ensembl	70_37	-1	known	silent	c.1734	p.S578	0.884	smart_Int_alpha_beta-p	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC
GPR35	2859	genome.wustl.edu	37	2	241569402	241569402	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	2	241569402	241569402	C	T	SNP	GPR35	ENST00000438013	human	ensembl	70_37	+1	known	silent	c.126	p.S42	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR35	HGNC
HAS1	3036	genome.wustl.edu	37	19	52222789	52222789	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	19	52222789	52222789	C	T	SNP	HAS1	ENST00000222115	human	ensembl	70_37	-1	known	silent	c.372	p.P124	0.459	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC
HIST1H3J	8356	genome.wustl.edu	37	6	27858549	27858549	+	Missense_Mutation	SNP	C	C	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	6	27858549	27858549	C	A	SNP	HIST1H3J	ENST00000359303	human	ensembl	70_37	-1	known	missense	c.22	p.A8S	0.998	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3J	HGNC
HTT	3064	genome.wustl.edu	37	4	3122961	3122961	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	4	3122961	3122961	G	A	SNP	HTT	ENST00000355072	human	ensembl	70_37	+1	known	missense	c.1075	p.E359K	1.000	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC
IRX5	10265	genome.wustl.edu	37	16	54967571	54967571	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	16	54967571	54967571	C	T	SNP	IRX5	ENST00000394636	human	ensembl	70_37	+1	known	missense	c.1238	p.T413M	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX5	HGNC
ISL1	3670	genome.wustl.edu	37	5	50683468	50683468	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	5	50683468	50683468	G	A	SNP	ISL1	ENST00000230658	human	ensembl	70_37	+1	known	silent	c.363	p.A121	0.997	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	ISL1	HGNC
KDM4A	9682	genome.wustl.edu	37	1	44132112	44132112	+	RNA	SNP	C	C	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	44132112	44132112	C	G	SNP	KDM4A	ENST00000472265	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KDM4A	HGNC
KNDC1	85442	genome.wustl.edu	37	10	135024981	135024981	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	10	135024981	135024981	G	A	SNP	KNDC1	ENST00000368572	human	ensembl	70_37	+1	known	missense	c.3970	p.V1324I	0.993	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC
KPNA1	3836	genome.wustl.edu	37	3	122145813	122145813	+	RNA	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	3	122145813	122145813	G	A	SNP	KPNA1	ENST00000466923	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.927	-	-	-	no_errors	KPNA1	HGNC
LAMA3	3909	genome.wustl.edu	37	18	21453031	21453031	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	18	21453031	21453031	C	T	SNP	LAMA3	ENST00000269217	human	ensembl	70_37	+1	known	missense	c.23	p.S8L	0.001	NULL	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_STAT_TF_coiled-coil,smart_EGF_laminin,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA3	HGNC
LMTK2	22853	genome.wustl.edu	37	7	97833404	97833404	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	7	97833404	97833404	G	A	SNP	LMTK2	ENST00000297293	human	ensembl	70_37	+1	known	silent	c.4389	p.P1463	0.003	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC
LOC728643	728643	genome.wustl.edu	37	16	51680381	51680381	+	RNA	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	16	51680381	51680381	G	A	SNP	LOC728643	ENST00000562726	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	CTD-2119F7.2	Clone_based_vega_gene
MCF2L	23263	genome.wustl.edu	37	13	113708711	113708711	+	RNA	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	13	113708711	113708711	G	A	SNP	MCF2L	ENST00000494043	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MCF2L	HGNC
MRPL21	219927	genome.wustl.edu	37	11	68671240	68671240	+	Silent	SNP	C	C	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	11	68671240	68671240	C	A	SNP	MRPL21	ENST00000362034	human	ensembl	70_37	-1	known	silent	c.39	p.L13	0.882	NULL	pfam_Ribosomal_L21,tigrfam_Ribosomal_L21	-	no_errors	MRPL21	HGNC
MT-CO2	4513	genome.wustl.edu	37	MT	8119	8119	+	Silent	SNP	T	T	C			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	MT	8119	8119	T	C	SNP	MT-CO2	ENST00000361739	human	ensembl	70_37	+1	known	silent	c.534	p.R178	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2-like_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC
MTIF2	4528	genome.wustl.edu	37	2	55470638	55470638	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	2	55470638	55470638	C	T	SNP	MTIF2	ENST00000263629	human	ensembl	70_37	-1	known	missense	c.1478	p.R493Q	0.678	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_TIF_IF2_dom3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC
MTMR7	9108	genome.wustl.edu	37	8	17188743	17188743	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	8	17188743	17188743	C	T	SNP	MTMR7	ENST00000180173	human	ensembl	70_37	-1	known	missense	c.781	p.D261N	1.000	pfam_Myotub-related	pfam_Myotub-related,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR7	HGNC
MTND1P15	100288998	genome.wustl.edu	37	17	22024729	22024729	+	RNA	SNP	T	T	C			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	17	22024729	22024729	T	C	SNP	MTND1P15	ENST00000579693	human	ensembl	70_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MTND1P15	HGNC
MYH7B	57644	genome.wustl.edu	37	20	33568502	33568502	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	20	33568502	33568502	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	70_37	+1	novel	missense	c.590	p.A197V	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC
NAT14	57106	genome.wustl.edu	37	19	55997216	55997216	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	19	55997216	55997216	C	T	SNP	NAT14	ENST00000591590	human	ensembl	70_37	+1	putative	silent	c.141	p.H47	0.007	NULL	NULL	-	no_errors	NAT14	HGNC
NHSL1	57224	genome.wustl.edu	37	6	138745300	138745300	+	Missense_Mutation	SNP	G	G	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	6	138745300	138745300	G	T	SNP	NHSL1	ENST00000427025	human	ensembl	70_37	-1	known	missense	c.4751	p.P1584H	0.000	NULL	NULL	-	no_errors	NHSL1	HGNC
NIPBL	25836	genome.wustl.edu	37	5	36955658	36955658	+	Missense_Mutation	SNP	T	T	C			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	5	36955658	36955658	T	C	SNP	NIPBL	ENST00000282516	human	ensembl	70_37	+1	known	missense	c.149	p.V50A	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC
OR1L4	254973	genome.wustl.edu	37	9	125487177	125487177	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	125487177	125487177	G	A	SNP	OR1L4	ENST00000259466	human	ensembl	70_37	+1	known	silent	c.909	p.K303	0.089	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L4	HGNC
OR4C5	79346	genome.wustl.edu	37	11	48387825	48387825	+	Missense_Mutation	SNP	T	T	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	11	48387825	48387825	T	G	SNP	OR4C5	ENST00000319813	human	ensembl	70_37	-1	known	missense	c.193	p.I65L	0.945	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C5	HGNC
OR4C5	79346	genome.wustl.edu	37	11	48387833	48387833	+	Missense_Mutation	SNP	T	T	C			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	11	48387833	48387833	T	C	SNP	OR4C5	ENST00000319813	human	ensembl	70_37	-1	known	missense	c.185	p.D62G	0.972	pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C5	HGNC
OR4C5	79346	genome.wustl.edu	37	11	48387850	48387850	+	Nonsense_Mutation	SNP	G	G	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	11	48387850	48387850	G	T	SNP	OR4C5	ENST00000319813	human	ensembl	70_37	-1	known	nonsense	c.168	p.Y56*	0.968	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C5	HGNC
ORMDL2	29095	genome.wustl.edu	37	12	56213206	56213206	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	12	56213206	56213206	C	T	SNP	ORMDL2	ENST00000243045	human	ensembl	70_37	+1	known	silent	c.255	p.H85	1.000	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL2	HGNC
PCBP3	54039	genome.wustl.edu	37	21	47333873	47333873	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	21	47333873	47333873	G	A	SNP	PCBP3	ENST00000400314	human	ensembl	70_37	+1	known	silent	c.609	p.P203	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP3	HGNC
PCDHB14	56122	genome.wustl.edu	37	5	140605131	140605131	+	Missense_Mutation	SNP	C	C	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	5	140605131	140605131	C	G	SNP	PCDHB14	ENST00000239449	human	ensembl	70_37	+1	known	missense	c.2054	p.S685C	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC
PCDHGA5	56110	genome.wustl.edu	37	5	140745349	140745349	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	5	140745349	140745349	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	70_37	+1	known	silent	c.1452	p.N484	0.076	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC
PEAR1	375033	genome.wustl.edu	37	1	156875139	156875139	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	156875139	156875139	G	A	SNP	PEAR1	ENST00000292357	human	ensembl	70_37	+1	known	missense	c.230	p.R77H	0.990	superfamily_Growth_fac_rcpt,pfscan_EMI_domain	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC
PHLPP2	23035	genome.wustl.edu	37	16	71697826	71697826	+	Missense_Mutation	SNP	T	T	C			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	16	71697826	71697826	T	C	SNP	PHLPP2	ENST00000356272	human	ensembl	70_37	-1	known	missense	c.1961	p.N654S	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC
PLIN2	123	genome.wustl.edu	37	9	19108575	19108575	+	RNA	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	19108575	19108575	C	T	SNP	PLIN2	ENST00000464326	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLIN2	HGNC
PLXNA4	91584	genome.wustl.edu	37	7	132192823	132192823	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	7	132192823	132192823	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	70_37	-1	known	silent	c.630	p.A210	0.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC
PNPLA1	285848	genome.wustl.edu	37	6	36270034	36270034	+	Frame_Shift_Del	DEL	C	C	-			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	6	36270034	36270034	C	-	DEL	PNPLA1	ENST00000457797	human	ensembl	70_37	+1	known	frame_shift_del	c.1175	p.P393fs	0.000	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA1	HGNC
PTCH1	5727	genome.wustl.edu	37	9	98211363	98211363	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	9	98211363	98211363	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	70_37	-1	known	silent	c.3792	p.F1264	0.950	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC
QARS	5859	genome.wustl.edu	37	3	49137041	49137041	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	3	49137041	49137041	G	A	SNP	QARS	ENST00000306125	human	ensembl	70_37	-1	known	silent	c.1428	p.V476	0.779	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Gln-tRNA-synth_Ib	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth_Ib,tigrfam_Gln-tRNA-synth_Ib	-	no_errors	QARS	HGNC
RBM6	10180	genome.wustl.edu	37	3	50005813	50005813	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	3	50005813	50005813	G	A	SNP	RBM6	ENST00000266022	human	ensembl	70_37	+1	known	missense	c.955	p.D319N	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC
REEP6	92840	genome.wustl.edu	37	19	1496286	1496286	+	Nonsense_Mutation	SNP	C	C	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	19	1496286	1496286	C	A	SNP	REEP6	ENST00000233596	human	ensembl	70_37	+1	known	nonsense	c.351	p.C117*	0.979	pfam_TB2_DP1_HVA22	pfam_TB2_DP1_HVA22	-	no_errors	REEP6	HGNC
RNF10	9921	genome.wustl.edu	37	12	121014518	121014518	+	RNA	SNP	T	T	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	12	121014518	121014518	T	G	SNP	RNF10	ENST00000535470	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.180	-	-	-	no_errors	RNF10	HGNC
RPS6KA6	27330	genome.wustl.edu	37	X	83372122	83372122	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	X	83372122	83372122	C	T	SNP	RPS6KA6	ENST00000262752	human	ensembl	70_37	-1	known	missense	c.895	p.E299K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA6	HGNC
SEMA5A	9037	genome.wustl.edu	37	5	9197373	9197373	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	5	9197373	9197373	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	70_37	-1	known	silent	c.975	p.S325	0.763	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC
SGSM1	129049	genome.wustl.edu	37	22	25297862	25297862	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	22	25297862	25297862	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	70_37	+1	known	silent	c.2838	p.C946	0.244	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC
SLC44A2	57153	genome.wustl.edu	37	19	10741799	10741799	+	Missense_Mutation	SNP	C	C	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	19	10741799	10741799	C	G	SNP	SLC44A2	ENST00000335757	human	ensembl	70_37	+1	known	missense	c.312	p.F104L	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC
SRCIN1	80725	genome.wustl.edu	37	17	36719744	36719744	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	17	36719744	36719744	C	T	SNP	SRCIN1	ENST00000264659	human	ensembl	70_37	-1	known	silent	c.555	p.L185	1.000	pfam_AIP3_C	pfam_AIP3_C	-	no_errors	SRCIN1	HGNC
STAG3L4	64940	genome.wustl.edu	37	7	66785110	66785110	+	RNA	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	7	66785110	66785110	C	T	SNP	STAG3L4	ENST00000416602	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	STAG3L4	HGNC
TEP1	7011	genome.wustl.edu	37	14	20841447	20841447	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	14	20841447	20841447	G	A	SNP	TEP1	ENST00000262715	human	ensembl	70_37	-1	known	nonsense	c.6796	p.Q2266*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC
THBS3	7059	genome.wustl.edu	37	1	155166959	155166959	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	155166959	155166959	G	A	SNP	THBS3	ENST00000368378	human	ensembl	70_37	-1	known	silent	c.2545	p.L849	0.999	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC
TMEM178B	100507421	genome.wustl.edu	37	7	141137413	141137413	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	7	141137413	141137413	C	T	SNP	TMEM178B	ENST00000565468	human	ensembl	70_37	+1	putative	missense	c.502	p.R168C	1.000	NULL	NULL	-	no_errors	TMEM178B	HGNC
TRAIP	10293	genome.wustl.edu	37	3	49867119	49867119	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	3	49867119	49867119	G	A	SNP	TRAIP	ENST00000331456	human	ensembl	70_37	-1	known	silent	c.1167	p.V389	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRAIP	HGNC
TRIM11	81559	genome.wustl.edu	37	1	228588758	228588758	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	228588758	228588758	G	A	SNP	TRIM11	ENST00000284551	human	ensembl	70_37	-1	known	silent	c.642	p.G214	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM11	HGNC
TRIM9	114088	genome.wustl.edu	37	14	51467500	51467500	+	Silent	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	14	51467500	51467500	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	70_37	-1	known	silent	c.1353	p.N451	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC
TRPC3	7222	genome.wustl.edu	37	4	122828660	122828660	+	Missense_Mutation	SNP	C	C	G			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	4	122828660	122828660	C	G	SNP	TRPC3	ENST00000379645	human	ensembl	70_37	-1	known	missense	c.1855	p.V619L	0.993	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC
TTN	7273	genome.wustl.edu	37	2	179567367	179567367	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	2	179567367	179567367	G	A	SNP	TTN	ENST00000342992	human	ensembl	70_37	-1	known	missense	c.26515	p.R8839C	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC
TUBA4B	80086	genome.wustl.edu	37	2	220136719	220136719	+	RNA	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	2	220136719	220136719	G	A	SNP	TUBA4B	ENST00000473885	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.899	-	-	-	no_errors	TUBA4B	HGNC
VPS39	23339	genome.wustl.edu	37	15	42454321	42454321	+	Missense_Mutation	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	15	42454321	42454321	C	T	SNP	VPS39	ENST00000348544	human	ensembl	70_37	-1	known	missense	c.2402	p.R801H	1.000	pfam_VPS39/TGF_beta_rcpt-assoc_2	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC
VPS41	27072	genome.wustl.edu	37	7	38805239	38805239	+	Missense_Mutation	SNP	T	T	C			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	7	38805239	38805239	T	C	SNP	VPS41	ENST00000310301	human	ensembl	70_37	-1	known	missense	c.1270	p.K424E	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC
XPR1	9213	genome.wustl.edu	37	1	180853188	180853188	+	Missense_Mutation	SNP	G	G	A			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	1	180853188	180853188	G	A	SNP	XPR1	ENST00000367590	human	ensembl	70_37	+1	known	missense	c.2077	p.E693K	1.000	NULL	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC
ZNF512B	57473	genome.wustl.edu	37	20	62595898	62595898	+	Silent	SNP	C	C	T			TCGA-EK-A3GN-01A-11D-A20U-09	TCGA-EK-A3GN-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d8016a3d-d2e9-45ba-ac10-9587913f76ef	5e78de9c-5e9e-4a85-9952-cacd7592adad	20	62595898	62595898	C	T	SNP	ZNF512B	ENST00000217130	human	ensembl	70_37	-1	known	silent	c.1206	p.L402	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC
