Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ADAM21	8747	genome.wustl.edu	37	14	70924602	70924602	+	Missense_Mutation	SNP	T	T	G			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	14	70924602	70924602	T	G	SNP	ADAM21	ENST00000267499	human	ensembl	70_37	+1	known	missense	c.386	p.F129C	0.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC
AKR1C2	1646	genome.wustl.edu	37	10	5041580	5041580	+	RNA	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	10	5041580	5041580	C	T	SNP	AKR1C2	ENST00000460124	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKR1C2	HGNC
ANKRD12	23253	genome.wustl.edu	37	18	9256897	9256897	+	Missense_Mutation	SNP	G	G	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	18	9256897	9256897	G	T	SNP	ANKRD12	ENST00000262126	human	ensembl	70_37	+1	known	missense	c.3632	p.S1211I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC
ANO2	57101	genome.wustl.edu	37	12	5685041	5685041	+	Silent	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	12	5685041	5685041	C	T	SNP	ANO2	ENST00000356134	human	ensembl	70_37	-1	known	silent	c.2583	p.Q861	0.090	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC
ATXN1	6310	genome.wustl.edu	37	6	16327014	16327014	+	Missense_Mutation	SNP	T	T	C			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	6	16327014	16327014	T	C	SNP	ATXN1	ENST00000244769	human	ensembl	70_37	-1	known	missense	c.1528	p.T510A	0.966	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC
BIRC2	329	genome.wustl.edu	37	11	102220740	102220740	+	Missense_Mutation	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	11	102220740	102220740	C	T	SNP	BIRC2	ENST00000227758	human	ensembl	70_37	+1	known	missense	c.155	p.T52I	1.000	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,pfam_CARD,superfamily_DEATH-like,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC2	HGNC
BRIX1	55299	genome.wustl.edu	37	5	34919960	34919960	+	Missense_Mutation	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	5	34919960	34919960	G	A	SNP	BRIX1	ENST00000336767	human	ensembl	70_37	+1	known	missense	c.287	p.R96H	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	BRIX1	HGNC
CARS	833	genome.wustl.edu	37	11	3038339	3038339	+	Silent	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	11	3038339	3038339	C	T	SNP	CARS	ENST00000380525	human	ensembl	70_37	-1	known	silent	c.1914	p.L638	0.973	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC
CCDC40	55036	genome.wustl.edu	37	17	78064063	78064064	+	Frame_Shift_Ins	INS	-	-	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	17	78064063	78064064	-	A	INS	CCDC40	ENST00000374877	human	ensembl	70_37	+1	known	frame_shift_ins	c.2958_2959	p.G986fs	0.005:0.005	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC
CCDC40	55036	genome.wustl.edu	37	17	78064065	78064066	+	In_Frame_Ins	INS	-	-	CAC			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	17	78064065	78064066	-	CAC	INS	CCDC40	ENST00000374877	human	ensembl	70_37	+1	known	in_frame_ins	c.2960_2961	p.988in_frame_insT	0.007:0.009	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC
CMAHP	8418	genome.wustl.edu	37	6	25109773	25109773	+	Missense_Mutation	SNP	C	C	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	6	25109773	25109773	C	A	SNP	CMAHP	ENST00000377989	human	ensembl	70_37	-1	known	missense	c.478	p.G160C	1.000	NULL	NULL	-	no_errors	CMAHP	HGNC
CMBL	134147	genome.wustl.edu	37	5	10286563	10286563	+	Silent	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	5	10286563	10286563	G	A	SNP	CMBL	ENST00000296658	human	ensembl	70_37	-1	known	silent	c.369	p.A123	0.935	pfam_Dienelactn_hydro,pfam_PLipase/COase/thioEstase	pfam_Dienelactn_hydro,pfam_PLipase/COase/thioEstase	-	no_errors	CMBL	HGNC
CNTN2	6900	genome.wustl.edu	37	1	205033553	205033553	+	Silent	SNP	C	C	G			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	1	205033553	205033553	C	G	SNP	CNTN2	ENST00000331830	human	ensembl	70_37	+1	known	silent	c.1344	p.A448	0.008	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN2	HGNC
DIAPH1	1729	genome.wustl.edu	37	5	140953564	140953566	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	5	140953564	140953566	GGA	-	DEL	DIAPH1	ENST00000253811	human	ensembl	70_37	-1	known	in_frame_del	c.1853_1851	p.P620in_frame_del	0.010:0.008:0.007	pfam_Formin_homology_1	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC
EME2	197342	genome.wustl.edu	37	16	1825175	1825175	+	Missense_Mutation	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	16	1825175	1825175	G	A	SNP	EME2	ENST00000307394	human	ensembl	70_37	+1	known	missense	c.611	p.R204Q	0.000	pfam_ERCC4_domain,smart_ERCC4_domain	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME2	HGNC
ENSG00000210127	0	genome.wustl.edu	37	MT	5610	5610	+	RNA	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	MT	5610	5610	G	A	SNP	ENSG00000210127	ENST00000387392	human	ensembl	70_37	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.8	Clone_based_ensembl_gene
ENSG00000221672	0	genome.wustl.edu	37	22	47243816	47243819	+	RNA	DEL	GTGT	GTGT	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	GTGT	GTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	22	47243816	47243819	GTGT	-	DEL	ENSG00000221672	ENST00000408745	human	ensembl	70_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.001:0.000	-	-	-	no_errors	Z97351.1	Clone_based_ensembl_gene
ENSG00000261759	0	genome.wustl.edu	37	16	19132370	19132370	+	RNA	DEL	T	T	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	16	19132370	19132370	T	-	DEL	ENSG00000261759	ENST00000567236	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	RP11-626G11.3	Clone_based_vega_gene
FAM194A	131831	genome.wustl.edu	37	3	150421460	150421460	+	Missense_Mutation	SNP	C	C	G			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	3	150421460	150421460	C	G	SNP	FAM194A	ENST00000295910	human	ensembl	70_37	-1	known	missense	c.226	p.E76Q	0.003	NULL	NULL	-	no_errors	FAM194A	HGNC
FCGBP	8857	genome.wustl.edu	37	19	40382747	40382747	+	Missense_Mutation	SNP	A	A	G			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	19	40382747	40382747	A	G	SNP	FCGBP	ENST00000221347	human	ensembl	70_37	-1	known	missense	c.10139	p.V3380A	0.952	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC
FLJ22184	80164	genome.wustl.edu	37	19	7937597	7937597	+	Missense_Mutation	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	19	7937597	7937597	C	T	SNP	FLJ22184	ENST00000539422	human	ensembl	70_37	-1	known	missense	c.533	p.R178H	0.958	NULL	NULL	-	no_errors	FLJ22184	Uniprot_genename
FLJ36000	284124	genome.wustl.edu	37	17	21910820	21910820	+	RNA	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	17	21910820	21910820	G	A	SNP	FLJ36000	ENST00000581223	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RP11-744K17.9	Clone_based_vega_gene
HDX	139324	genome.wustl.edu	37	X	83724357	83724360	+	Frame_Shift_Del	DEL	TGTT	TGTT	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	TGTT	TGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	X	83724357	83724360	TGTT	-	DEL	HDX	ENST00000297977	human	ensembl	70_37	-1	known	frame_shift_del	c.374_371	p.K124fs	0.372:0.362:0.325:0.948	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	HDX	HGNC
KCNK2	3776	genome.wustl.edu	37	1	215259781	215259781	+	Silent	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	1	215259781	215259781	G	A	SNP	KCNK2	ENST00000444842	human	ensembl	70_37	+1	known	silent	c.117	p.T39	0.984	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC
KIF1A	547	genome.wustl.edu	37	2	241696841	241696843	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	2	241696841	241696843	TCC	-	DEL	KIF1A	ENST00000498729	human	ensembl	70_37	-1	known	in_frame_del	c.2753_2751	p.E917in_frame_del	1.000:1.000:1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC
KRTAP5-9	3846	genome.wustl.edu	37	11	71259966	71259966	+	Missense_Mutation	SNP	G	G	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	11	71259966	71259966	G	T	SNP	KRTAP5-9	ENST00000528743	human	ensembl	70_37	+1	known	missense	c.263	p.C88F	0.862	NULL	NULL	-	no_errors	KRTAP5-9	HGNC
MT-ND5	4540	genome.wustl.edu	37	MT	12962	12962	+	Missense_Mutation	SNP	G	G	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	MT	12962	12962	G	T	SNP	MT-ND5	ENST00000361567	human	ensembl	70_37	+1	known	missense	c.626	p.S209I	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC
MUC20	200958	genome.wustl.edu	37	3	195453332	195453332	+	Missense_Mutation	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	3	195453332	195453332	G	A	SNP	MUC20	ENST00000447234	human	ensembl	70_37	+1	known	missense	c.1858	p.G620R	0.004	NULL	NULL	-	no_errors	MUC20	HGNC
MYH4	4622	genome.wustl.edu	37	17	10357006	10357006	+	Missense_Mutation	SNP	A	A	G			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	17	10357006	10357006	A	G	SNP	MYH4	ENST00000255381	human	ensembl	70_37	-1	known	missense	c.2888	p.L963P	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC
MYH9	4627	genome.wustl.edu	37	22	36685206	36685206	+	Silent	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	22	36685206	36685206	C	T	SNP	MYH9	ENST00000216181	human	ensembl	70_37	-1	known	silent	c.4482	p.E1494	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC
NME6	10201	genome.wustl.edu	37	3	48337645	48337645	+	Missense_Mutation	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	3	48337645	48337645	C	T	SNP	NME6	ENST00000421967	human	ensembl	70_37	-1	known	missense	c.221	p.R74H	0.996	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME6	HGNC
NOP56	10528	genome.wustl.edu	37	20	2635849	2635849	+	RNA	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	20	2635849	2635849	G	A	SNP	NOP56	ENST00000484998	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	NOP56	HGNC
PDK3	5165	genome.wustl.edu	37	X	24517162	24517162	+	RNA	DEL	T	T	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	X	24517162	24517162	T	-	DEL	PDK3	ENST00000493226	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	PDK3	HGNC
PLCB4	5332	genome.wustl.edu	37	20	9460165	9460165	+	RNA	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	20	9460165	9460165	C	T	SNP	PLCB4	ENST00000464199	human	ensembl	70_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLCB4	HGNC
PLCH1	23007	genome.wustl.edu	37	3	155093577	155093578	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	3	155093577	155093578	-	TC	INS	PLCH1	ENST00000494598	human	ensembl	70_37	-1	known	frame_shift_ins	c.2940_2939	p.D980fs	0.001:0.001	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC
PPP1R1C	151242	genome.wustl.edu	37	2	182928496	182928496	+	Silent	SNP	G	G	C			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	2	182928496	182928496	G	C	SNP	PPP1R1C	ENST00000409137	human	ensembl	70_37	+1	known	silent	c.219	p.V73	1.000	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1C	HGNC
RIPK1	8737	genome.wustl.edu	37	6	3078028	3078028	+	Silent	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	6	3078028	3078028	C	T	SNP	RIPK1	ENST00000259808	human	ensembl	70_37	+1	known	silent	c.180	p.L60	0.991	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC
SLC5A11	115584	genome.wustl.edu	37	16	24921753	24921753	+	Missense_Mutation	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	16	24921753	24921753	G	A	SNP	SLC5A11	ENST00000347898	human	ensembl	70_37	+1	known	missense	c.1777	p.V593I	0.011	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC
SNORD3B-2	780852	genome.wustl.edu	37	17	18967372	18967372	+	RNA	SNP	G	G	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	17	18967372	18967372	G	T	SNP	SNORD3B-2	ENST00000364880	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.077	-	-	-	no_errors	SNORD3B-2	HGNC
STARD6	147323	genome.wustl.edu	37	18	51851221	51851221	+	Silent	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	18	51851221	51851221	C	T	SNP	STARD6	ENST00000307844	human	ensembl	70_37	-1	known	silent	c.504	p.V168	1.000	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	pfam_START_lipid-bd,smart_START_lipid-bd,pfscan_START_lipid-bd	-	no_errors	STARD6	HGNC
STAT5B	6777	genome.wustl.edu	37	17	40362483	40362483	+	Missense_Mutation	SNP	C	C	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	17	40362483	40362483	C	A	SNP	STAT5B	ENST00000293328	human	ensembl	70_37	-1	known	missense	c.1713	p.W571C	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC
SV2C	22987	genome.wustl.edu	37	5	75580985	75580985	+	Splice_Site	SNP	A	A	G			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	5	75580985	75580985	A	G	SNP	SV2C	ENST00000502798	human	ensembl	70_37	+1	known	splice_site	c.914-2	e4-2	1.000	-	-	-	no_errors	SV2C	HGNC
SYNDIG1L	646658	genome.wustl.edu	37	14	74876248	74876248	+	Nonsense_Mutation	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	14	74876248	74876248	C	T	SNP	SYNDIG1L	ENST00000331628	human	ensembl	70_37	-1	known	nonsense	c.200	p.W67*	1.000	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	SYNDIG1L	HGNC
TMEM254	80195	genome.wustl.edu	37	10	81841429	81841432	+	RNA	DEL	AAAG	AAAG	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	10	81841429	81841432	AAAG	-	DEL	TMEM254	ENST00000463029	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.019:0.020:0.019:0.021	-	-	-	no_errors	TMEM254	HGNC
TMEM8A	58986	genome.wustl.edu	37	16	422230	422230	+	Missense_Mutation	SNP	C	C	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	16	422230	422230	C	A	SNP	TMEM8A	ENST00000431232	human	ensembl	70_37	-1	known	missense	c.2073	p.W691C	1.000	pfam_DUF3522	pfam_DUF3522,pfscan_EG-like_dom	-	no_errors	TMEM8A	HGNC
TRAF3	7187	genome.wustl.edu	37	14	103369593	103369593	+	Missense_Mutation	SNP	G	G	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	14	103369593	103369593	G	A	SNP	TRAF3	ENST00000392745	human	ensembl	70_37	+1	known	missense	c.962	p.R321Q	1.000	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC
TRIM5	85363	genome.wustl.edu	37	11	5687321	5687321	+	Frame_Shift_Del	DEL	A	A	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	11	5687321	5687321	A	-	DEL	TRIM5	ENST00000396853	human	ensembl	70_37	-1	known	frame_shift_del	c.761	p.L254fs	0.002	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC
TSC22D3	1831	genome.wustl.edu	37	X	107018613	107018613	+	Missense_Mutation	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	X	107018613	107018613	C	T	SNP	TSC22D3	ENST00000315660	human	ensembl	70_37	-1	known	missense	c.37	p.G13S	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC
TTLL6	284076	genome.wustl.edu	37	17	46863530	46863530	+	Missense_Mutation	SNP	T	T	A			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	17	46863530	46863530	T	A	SNP	TTLL6	ENST00000393382	human	ensembl	70_37	-1	known	missense	c.1757	p.K586I	0.997	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL6	HGNC
UBAP2L	9898	genome.wustl.edu	37	1	154201178	154201178	+	Missense_Mutation	SNP	C	C	T			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	1	154201178	154201178	C	T	SNP	UBAP2L	ENST00000361546	human	ensembl	70_37	+1	known	missense	c.256	p.L86F	1.000	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC
VLDLR	7436	genome.wustl.edu	37	9	2643216	2643216	+	Missense_Mutation	SNP	A	A	G			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	9	2643216	2643216	A	G	SNP	VLDLR	ENST00000382100	human	ensembl	70_37	+1	known	missense	c.505	p.R169G	0.984	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC
VPS45	11311	genome.wustl.edu	37	1	150082514	150082514	+	RNA	DEL	A	A	-			TCGA-IR-A3L7-01A-21D-A20U-09	TCGA-IR-A3L7-10A-01D-A20U-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ae4ff71-2436-454a-bd10-33c454f966ef	0af7301e-afd2-4a54-9421-a69ef71c956e	1	150082514	150082514	A	-	DEL	VPS45	ENST00000484306	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	VPS45	HGNC
