Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
AKAP5	9495	genome.wustl.edu	37	14	64936170	64936170	+	Missense_Mutation	SNP	C	C	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	14	64936170	64936170	C	T	SNP	AKAP5	ENST00000320636	human	ensembl	70_37	+1	known	missense	c.1058	p.T353I	0.085	NULL	pfam_Pkinase-A_anch_WSK-motif	-	no_errors	AKAP5	HGNC
ALMS1	7840	genome.wustl.edu	37	2	73613031	73613032	+	In_Frame_Ins	INS	-	-	GGA			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	2	73613031	73613032	-	GGA	INS	ALMS1	ENST00000264448	human	ensembl	70_37	+1	known	in_frame_ins	c.35_36	p.16in_frame_insE	0.999:0.989	NULL	NULL	-	no_errors	ALMS1	HGNC
ANXA1	301	genome.wustl.edu	37	9	75783796	75783797	+	RNA	INS	-	-	GTGT			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	9	75783796	75783797	-	GTGT	INS	ANXA1	ENST00000491192	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	ANXA1	HGNC
ARHGAP22	58504	genome.wustl.edu	37	10	49791043	49791043	+	Silent	SNP	C	C	G			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	10	49791043	49791043	C	G	SNP	ARHGAP22	ENST00000417912	human	ensembl	70_37	-1	known	silent	c.189	p.G63	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP22	HGNC
BAZ2B	29994	genome.wustl.edu	37	2	160318094	160318094	+	RNA	SNP	G	G	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	2	160318094	160318094	G	T	SNP	BAZ2B	ENST00000483316	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.964	-	-	-	no_errors	BAZ2B	HGNC
BRIX1	55299	genome.wustl.edu	37	5	34925328	34925329	+	Splice_Site	INS	-	-	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	5	34925328	34925329	-	A	INS	BRIX1	ENST00000336767	human	ensembl	70_37	+1	known	splice_site_ins	c.793-3_793-2	e10-2	0.213:0.997	-	-	-	no_errors	BRIX1	HGNC
CACNA1E	777	genome.wustl.edu	37	1	181767481	181767481	+	Silent	SNP	C	C	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	1	181767481	181767481	C	A	SNP	CACNA1E	ENST00000367573	human	ensembl	70_37	+1	known	silent	c.6453	p.T2151	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC
CCDC11	220136	genome.wustl.edu	37	18	47792730	47792730	+	Silent	SNP	G	G	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	18	47792730	47792730	G	T	SNP	CCDC11	ENST00000398545	human	ensembl	70_37	-1	known	silent	c.45	p.G15	0.996	NULL	NULL	-	no_errors	CCDC11	HGNC
CCPG1	9236	genome.wustl.edu	37	15	55653051	55653051	+	Missense_Mutation	SNP	T	T	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	15	55653051	55653051	T	A	SNP	CCPG1	ENST00000310958	human	ensembl	70_37	-1	known	missense	c.920	p.N307I	1.000	NULL	NULL	-	no_errors	CCPG1	HGNC
CDC27	996	genome.wustl.edu	37	17	45234327	45234327	+	Missense_Mutation	SNP	C	C	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	17	45234327	45234327	C	T	SNP	CDC27	ENST00000531206	human	ensembl	70_37	-1	known	missense	c.794	p.G265D	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC
CHD4	1108	genome.wustl.edu	37	12	6701194	6701194	+	Missense_Mutation	SNP	T	T	G			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	12	6701194	6701194	T	G	SNP	CHD4	ENST00000309577	human	ensembl	70_37	-1	known	missense	c.2978	p.N993T	1.000	pfam_SNF2_N	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC
DOPEY1	23033	genome.wustl.edu	37	6	83877984	83877984	+	RNA	SNP	C	C	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	6	83877984	83877984	C	T	SNP	DOPEY1	ENST00000484282	human	ensembl	70_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DOPEY1	HGNC
ENSG00000173213	0	genome.wustl.edu	37	18	49208	49208	+	Missense_Mutation	SNP	G	G	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	18	49208	49208	G	A	SNP	ENSG00000173213	ENST00000573909	human	ensembl	70_37	-1	putative	missense	c.11	p.P4L	0.997	NULL	pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin	-	no_errors	RP11-683L23.1	Clone_based_vega_gene
ENSG00000212104	0	genome.wustl.edu	37	3	76467129	76467129	+	RNA	SNP	A	A	C			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	3	76467129	76467129	A	C	SNP	ENSG00000212104	ENST00000390815	human	ensembl	70_37	-1	novel	rna	NULL	NULL	0.283	-	-	-	no_errors	AC026877.1	Clone_based_ensembl_gene
ERCC6	2074	genome.wustl.edu	37	10	50740702	50740702	+	Silent	SNP	G	G	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	10	50740702	50740702	G	A	SNP	ERCC6	ENST00000355832	human	ensembl	70_37	-1	known	silent	c.309	p.D103	0.013	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC
ERICH2	285141	genome.wustl.edu	37	2	171649410	171649411	+	Frame_Shift_Ins	INS	-	-	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	2	171649410	171649411	-	A	INS	ERICH2	ENST00000409885	human	ensembl	70_37	+1	novel	frame_shift_ins	c.254_255	p.L88fs	1.000:1.000	NULL	NULL	-	no_errors	ERICH2	HGNC
F9	2158	genome.wustl.edu	37	X	138633355	138633355	+	Missense_Mutation	SNP	C	C	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	X	138633355	138633355	C	A	SNP	F9	ENST00000218099	human	ensembl	70_37	+1	known	missense	c.655	p.Q219K	0.000	superfamily_Pept_cys/ser_Trypsin-like,pirsf_Pept_S1A_FX	pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EG-like_dom,smart_Peptidase_S1_S6,pirsf_Pept_S1A_FX,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F9	HGNC
FBN1	2200	genome.wustl.edu	37	15	48760655	48760655	+	Silent	SNP	G	G	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	15	48760655	48760655	G	A	SNP	FBN1	ENST00000316623	human	ensembl	70_37	-1	known	silent	c.4536	p.D1512	0.238	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EG-like_dom,smart_EGF-like_Ca-bd,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC
FLNB	2317	genome.wustl.edu	37	3	58127612	58127612	+	Nonsense_Mutation	SNP	G	G	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	3	58127612	58127612	G	T	SNP	FLNB	ENST00000295956	human	ensembl	70_37	+1	known	nonsense	c.5137	p.E1713*	0.963	pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC
GABRD	2563	genome.wustl.edu	37	1	1961008	1961008	+	Missense_Mutation	SNP	C	C	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	1	1961008	1961008	C	T	SNP	GABRD	ENST00000378585	human	ensembl	70_37	+1	known	missense	c.866	p.T289M	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAd_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRD	HGNC
GABRD	2563	genome.wustl.edu	37	1	1961652	1961652	+	Silent	SNP	C	C	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	1	1961652	1961652	C	T	SNP	GABRD	ENST00000378585	human	ensembl	70_37	+1	known	silent	c.1290	p.Y430	0.902	superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAd_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRD	HGNC
GIT2	9815	genome.wustl.edu	37	12	110427511	110427511	+	Missense_Mutation	SNP	G	G	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	12	110427511	110427511	G	T	SNP	GIT2	ENST00000355312	human	ensembl	70_37	-1	known	missense	c.283	p.P95T	1.000	pfam_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,pfscan_ArfGAP	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT2	HGNC
IFI16	3428	genome.wustl.edu	37	1	158988186	158988186	+	Missense_Mutation	SNP	C	C	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	1	158988186	158988186	C	A	SNP	IFI16	ENST00000295809	human	ensembl	70_37	+1	known	missense	c.717	p.F239L	0.072	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC
KRT72	140807	genome.wustl.edu	37	12	52980755	52980755	+	Silent	SNP	G	G	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	12	52980755	52980755	G	A	SNP	KRT72	ENST00000293745	human	ensembl	70_37	-1	known	silent	c.1320	p.G440	0.857	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT72	HGNC
LIMK1	3984	genome.wustl.edu	37	7	73520242	73520242	+	Missense_Mutation	SNP	T	T	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	7	73520242	73520242	T	A	SNP	LIMK1	ENST00000336180	human	ensembl	70_37	+1	known	missense	c.646	p.S216T	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC
LINC00303	284573	genome.wustl.edu	37	1	204006330	204006330	+	RNA	SNP	G	G	C			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	1	204006330	204006330	G	C	SNP	LINC00303	ENST00000367207	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	LINC00303	HGNC
MAP1A	4130	genome.wustl.edu	37	15	43814937	43814937	+	Missense_Mutation	SNP	G	G	C			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	15	43814937	43814937	G	C	SNP	MAP1A	ENST00000399453	human	ensembl	70_37	+1	known	missense	c.1266	p.E422D	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC
MMP25	64386	genome.wustl.edu	37	16	3105840	3105840	+	RNA	SNP	C	C	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	16	3105840	3105840	C	T	SNP	MMP25	ENST00000570755	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MMP25	HGNC
MTOR	2475	genome.wustl.edu	37	1	11273502	11273502	+	Missense_Mutation	SNP	C	C	G			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	1	11273502	11273502	C	G	SNP	MTOR	ENST00000361445	human	ensembl	70_37	-1	known	missense	c.3239	p.R1080P	0.998	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC
NYNRIN	57523	genome.wustl.edu	37	14	24879175	24879175	+	Silent	SNP	C	C	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	14	24879175	24879175	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	70_37	+1	known	silent	c.2175	p.P725	0.002	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC
OTOA	146183	genome.wustl.edu	37	16	21742211	21742211	+	Missense_Mutation	SNP	T	T	C			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	16	21742211	21742211	T	C	SNP	OTOA	ENST00000286149	human	ensembl	70_37	+1	known	missense	c.2303	p.V768A	0.015	NULL	NULL	-	no_errors	OTOA	HGNC
PTEN	5728	genome.wustl.edu	37	10	89685305	89685306	+	Frame_Shift_Ins	INS	-	-	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	10	89685305	89685306	-	A	INS	PTEN	ENST00000371953	human	ensembl	70_37	+1	known	frame_shift_ins	c.200_201	p.Y68fs	1.000:1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC
RPS4X	6191	genome.wustl.edu	37	X	71493751	71493751	+	Silent	SNP	G	G	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	X	71493751	71493751	G	A	SNP	RPS4X	ENST00000316084	human	ensembl	70_37	-1	known	silent	c.432	p.A144	0.995	pfam_Ribosomal_S4e_central,pirsf_Ribosomal_S4e	pfam_Ribosomal_S4e_central,pfam_Ribosomal_S4e_N,pfam_S4_RNA-bd,pfam_KOW,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd	-	no_errors	RPS4X	HGNC
SCRIB	23513	genome.wustl.edu	37	8	144887379	144887379	+	Missense_Mutation	SNP	C	C	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	8	144887379	144887379	C	T	SNP	SCRIB	ENST00000320476	human	ensembl	70_37	-1	known	missense	c.2573	p.R858H	0.109	superfamily_PDZ	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC
SERPINB7	8710	genome.wustl.edu	37	18	61449742	61449742	+	Missense_Mutation	SNP	G	G	C			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	18	61449742	61449742	G	C	SNP	SERPINB7	ENST00000336429	human	ensembl	70_37	+1	known	missense	c.136	p.A46P	0.436	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB7	HGNC
SLC25A5	292	genome.wustl.edu	37	X	118603742	118603742	+	Missense_Mutation	SNP	A	A	C			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	X	118603742	118603742	A	C	SNP	SLC25A5	ENST00000317881	human	ensembl	70_37	+1	known	missense	c.230	p.N77T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC
SLC25A5	292	genome.wustl.edu	37	X	118603747	118603747	+	Missense_Mutation	SNP	A	A	T			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	X	118603747	118603747	A	T	SNP	SLC25A5	ENST00000317881	human	ensembl	70_37	+1	known	missense	c.235	p.I79F	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC
SMIM1	388588	genome.wustl.edu	37	1	3692044	3692044	+	Missense_Mutation	SNP	G	G	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	1	3692044	3692044	G	A	SNP	SMIM1	ENST00000561886	human	ensembl	70_37	+1	putative	missense	c.107	p.R36H	0.031	NULL	NULL	-	no_errors	SMIM1	HGNC
SUCLG1	8802	genome.wustl.edu	37	2	84668457	84668457	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	2	84668457	84668457	G	A	SNP	SUCLG1	ENST00000393868	human	ensembl	70_37	-1	known	nonsense	c.445	p.Q149*	1.000	pirsf_CoA_lig_alpha,tigrfam_CoA_lig_alpha	pfam_CoA-bd,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_CoA_lig_alpha,prints_CoA_lig_alpha,tigrfam_CoA_lig_alpha	-	no_errors	SUCLG1	HGNC
TAF9B	51616	genome.wustl.edu	37	X	77393273	77393273	+	Silent	SNP	G	G	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	X	77393273	77393273	G	A	SNP	TAF9B	ENST00000341864	human	ensembl	70_37	-1	known	silent	c.378	p.N126	1.000	pfam_TFIID-31	pfam_TFIID-31,superfamily_Histone-fold	-	no_errors	TAF9B	HGNC
TFDP1	7027	genome.wustl.edu	37	13	114286076	114286076	+	RNA	SNP	G	G	C			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	13	114286076	114286076	G	C	SNP	TFDP1	ENST00000465174	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.454	-	-	-	no_errors	TFDP1	HGNC
UACA	55075	genome.wustl.edu	37	15	70959464	70959464	+	Silent	SNP	A	A	G			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	15	70959464	70959464	A	G	SNP	UACA	ENST00000322954	human	ensembl	70_37	-1	known	silent	c.3559	p.L1187	0.061	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC
WDR62	284403	genome.wustl.edu	37	19	36590358	36590358	+	Missense_Mutation	SNP	C	C	G			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	19	36590358	36590358	C	G	SNP	WDR62	ENST00000401500	human	ensembl	70_37	+1	known	missense	c.2578	p.P860A	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC
ZNF595	152687	genome.wustl.edu	37	4	85969	85970	+	RNA	INS	-	-	A			TCGA-EA-A556-01A-11D-A26G-09	TCGA-EA-A556-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c425e47-7f54-4c68-9be6-d58b4b980740	e6f0f4ac-02bd-44c2-9190-a1f437b2f83c	4	85969	85970	-	A	INS	ZNF595	ENST00000339368	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.614:0.715	-	-	-	no_errors	ZNF595	HGNC
