Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ABCD1	215	genome.wustl.edu	37	X	152990784	152990784	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	X	152990784	152990784	C	T	SNP	ABCD1	ENST00000218104	human	ensembl	70_37	+1	known	silent	c.63	p.L21	1.000	tigrfam_FA_transporter	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC
ABHD16B	140701	genome.wustl.edu	37	20	62494153	62494153	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	20	62494153	62494153	C	T	SNP	ABHD16B	ENST00000369916	human	ensembl	70_37	+1	known	silent	c.1260	p.P420	0.006	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16B	HGNC
ABI1	10006	genome.wustl.edu	37	10	27112160	27112160	+	Silent	SNP	T	T	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	10	27112160	27112160	T	C	SNP	ABI1	ENST00000355394	human	ensembl	70_37	-1	known	silent	c.192	p.Q64	1.000	pfscan_T_SNARE_dom	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI1	HGNC
ACAP3	116983	genome.wustl.edu	37	1	1235269	1235269	+	Missense_Mutation	SNP	A	A	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	1235269	1235269	A	C	SNP	ACAP3	ENST00000353662	human	ensembl	70_37	-1	known	missense	c.554	p.I185S	1.000	NULL	pfam_ArfGAP,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP3	HGNC
ADAD1	132612	genome.wustl.edu	37	4	123317530	123317530	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	4	123317530	123317530	G	A	SNP	ADAD1	ENST00000296513	human	ensembl	70_37	+1	known	missense	c.722	p.R241K	1.000	smart_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADAD1	HGNC
AVPR2	554	genome.wustl.edu	37	X	153172076	153172076	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	X	153172076	153172076	G	A	SNP	AVPR2	ENST00000337474	human	ensembl	70_37	+1	known	missense	c.1010	p.R337Q	0.183	prints_Vprsn_rcpt_V2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC
B4GALNT4	338707	genome.wustl.edu	37	11	373229	373229	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	373229	373229	G	A	SNP	B4GALNT4	ENST00000329962	human	ensembl	70_37	+1	known	missense	c.574	p.E192K	1.000	pfam_PA14,smart_PA14	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC
BBS2	583	genome.wustl.edu	37	16	56536701	56536701	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	16	56536701	56536701	C	T	SNP	BBS2	ENST00000245157	human	ensembl	70_37	-1	known	missense	c.824	p.R275Q	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC
C7	730	genome.wustl.edu	37	5	40947853	40947853	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	5	40947853	40947853	C	T	SNP	C7	ENST00000313164	human	ensembl	70_37	+1	known	silent	c.888	p.I296	0.713	pfam_MACPF,smart_MACPF,prints_MAC_perforin	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Complement_control_module,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC
CACHD1	57685	genome.wustl.edu	37	1	65099846	65099846	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	65099846	65099846	C	T	SNP	CACHD1	ENST00000371073	human	ensembl	70_37	+1	known	silent	c.909	p.S303	0.978	pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC
CACNA2D3	55799	genome.wustl.edu	37	3	54919573	54919573	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	3	54919573	54919573	G	A	SNP	CACNA2D3	ENST00000288197	human	ensembl	70_37	+1	known	silent	c.2016	p.A672	0.368	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC
CAMLG	819	genome.wustl.edu	37	5	134076890	134076890	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	5	134076890	134076890	G	A	SNP	CAMLG	ENST00000297156	human	ensembl	70_37	+1	known	missense	c.310	p.E104K	0.721	pirsf_Ca_signal-mod_cyclophilin_lig	pirsf_Ca_signal-mod_cyclophilin_lig	-	no_errors	CAMLG	HGNC
CCDC108	255101	genome.wustl.edu	37	2	219897276	219897276	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	2	219897276	219897276	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	70_37	-1	known	silent	c.561	p.F187	1.000	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC
COL15A1	1306	genome.wustl.edu	37	9	101812136	101812136	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	9	101812136	101812136	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	70_37	+1	known	missense	c.2863	p.A955T	0.984	superfamily_C-type_lectin_fold	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC
DCHS1	8642	genome.wustl.edu	37	11	6653796	6653796	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	6653796	6653796	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	70_37	-1	known	nonsense	c.2947	p.R983*	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC
DENND4B	9909	genome.wustl.edu	37	1	153912202	153912202	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	153912202	153912202	C	T	SNP	DENND4B	ENST00000361217	human	ensembl	70_37	-1	known	missense	c.1682	p.R561Q	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC
DNAJB8-AS1	285224	genome.wustl.edu	37	3	128182808	128182808	+	RNA	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	3	128182808	128182808	C	T	SNP	DNAJB8-AS1	ENST00000471626	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DNAJB8-AS1	HGNC
DOCK7	85440	genome.wustl.edu	37	1	63052286	63052286	+	Silent	SNP	G	G	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	63052286	63052286	G	C	SNP	DOCK7	ENST00000251157	human	ensembl	70_37	-1	known	silent	c.1692	p.L564	0.995	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC
DYNC2H1	79659	genome.wustl.edu	37	11	103092859	103092859	+	Missense_Mutation	SNP	A	A	G			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	103092859	103092859	A	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	70_37	+1	known	missense	c.9208	p.N3070D	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC
EFHB	151651	genome.wustl.edu	37	3	19947139	19947139	+	Missense_Mutation	SNP	G	G	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	3	19947139	19947139	G	C	SNP	EFHB	ENST00000295824	human	ensembl	70_37	-1	known	missense	c.1391	p.S464C	0.906	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHB	HGNC
ENSG00000238261	0	genome.wustl.edu	37	1	143380503	143380503	+	RNA	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	143380503	143380503	C	T	SNP	ENSG00000238261	ENST00000423394	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	BX004987.5	Clone_based_vega_gene
TMEM255B	348013	genome.wustl.edu	37	13	114498154	114498154	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	13	114498154	114498154	G	A	SNP	FAM70B	ENST00000375353	human	ensembl	70_37	+1	known	missense	c.286	p.V96M	0.997	NULL	NULL	-	no_errors	FAM70B	HGNC
GAB1	2549	genome.wustl.edu	37	4	144359481	144359481	+	Missense_Mutation	SNP	A	A	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	4	144359481	144359481	A	T	SNP	GAB1	ENST00000262995	human	ensembl	70_37	+1	known	missense	c.923	p.D308V	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC
GLRX2	51022	genome.wustl.edu	37	1	193070288	193070288	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	193070288	193070288	G	A	SNP	GLRX2	ENST00000367440	human	ensembl	70_37	-1	known	missense	c.169	p.P57S	0.197	superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	-	no_errors	GLRX2	HGNC
GOLGA6A	342096	genome.wustl.edu	37	15	74363798	74363798	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	15	74363798	74363798	G	A	SNP	GOLGA6A	ENST00000290438	human	ensembl	70_37	-1	known	silent	c.1710	p.T570	0.990	NULL	NULL	-	no_errors	GOLGA6A	HGNC
GOLGA8G	283768	genome.wustl.edu	37	15	28769099	28769099	+	Missense_Mutation	SNP	C	C	G			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	15	28769099	28769099	C	G	SNP	GOLGA8G	ENST00000433304	human	ensembl	70_37	-1	known	missense	c.743	p.R248T	0.987	NULL	NULL	-	no_errors	GOLGA8G	HGNC
GPI	2821	genome.wustl.edu	37	19	34857712	34857712	+	Missense_Mutation	SNP	G	G	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	19	34857712	34857712	G	T	SNP	GPI	ENST00000415930	human	ensembl	70_37	+1	known	missense	c.355	p.A119S	1.000	pfam_G6P_Isomerase	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC
HUWE1	10075	genome.wustl.edu	37	X	53615416	53615416	+	Missense_Mutation	SNP	T	T	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	X	53615416	53615416	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	70_37	-1	known	missense	c.4540	p.I1514V	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC
IMPG1	3617	genome.wustl.edu	37	6	76712654	76712654	+	Silent	SNP	T	T	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	6	76712654	76712654	T	C	SNP	IMPG1	ENST00000369950	human	ensembl	70_37	-1	known	silent	c.1272	p.G424	0.000	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG1	HGNC
KAZN	23254	genome.wustl.edu	37	1	15421416	15421416	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	15421416	15421416	G	A	SNP	KAZN	ENST00000376030	human	ensembl	70_37	+1	known	missense	c.1534	p.E512K	0.997	superfamily_SAM/pointed	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC
LOC100996870	100996870	genome.wustl.edu	37	9	66466172	66466172	+	RNA	SNP	T	T	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	9	66466172	66466172	T	C	SNP	LOC100996870	ENST00000424345	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.124	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene
LRCH2	57631	genome.wustl.edu	37	X	114384485	114384485	+	Missense_Mutation	SNP	G	G	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	X	114384485	114384485	G	T	SNP	LRCH2	ENST00000317135	human	ensembl	70_37	-1	known	missense	c.1600	p.Q534K	0.998	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold-like,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC
LRP2	4036	genome.wustl.edu	37	2	170048422	170048422	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	2	170048422	170048422	C	T	SNP	LRP2	ENST00000263816	human	ensembl	70_37	-1	known	silent	c.8952	p.E2984	0.920	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC
LRP5	4041	genome.wustl.edu	37	11	68190979	68190979	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	68190979	68190979	G	A	SNP	LRP5	ENST00000294304	human	ensembl	70_37	+1	known	missense	c.3050	p.S1017N	0.184	smart_LDLR_classB_rpt,pirsf_Low_density_Lipo_rcpt-rel_p5/6	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC
MAGEE1	57692	genome.wustl.edu	37	X	75651040	75651040	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	X	75651040	75651040	G	A	SNP	MAGEE1	ENST00000361470	human	ensembl	70_37	+1	known	missense	c.2717	p.R906H	0.898	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC
MAPK1	5594	genome.wustl.edu	37	22	22127164	22127164	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	22	22127164	22127164	C	T	SNP	MAPK1	ENST00000215832	human	ensembl	70_37	-1	known	missense	c.964	p.E322K	1.000	superfamily_Kinase-like_dom,prints_MAPK_ERK1/2	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK1/2,prints_MAPK_ERK3/4	-	no_errors	MAPK1	HGNC
MAST1	22983	genome.wustl.edu	37	19	12978425	12978425	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	19	12978425	12978425	G	A	SNP	MAST1	ENST00000251472	human	ensembl	70_37	+1	known	silent	c.2277	p.L759	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC
MIR4477B	100616194	genome.wustl.edu	37	9	68415379	68415379	+	RNA	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	9	68415379	68415379	G	A	SNP	MIR4477B	ENST00000581659	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.197	-	-	-	no_errors	MIR4477B	HGNC
MPDZ	8777	genome.wustl.edu	37	9	13176163	13176163	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	9	13176163	13176163	G	A	SNP	MPDZ	ENST00000319217	human	ensembl	70_37	-1	known	missense	c.2903	p.P968L	0.015	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC
MPP5	64398	genome.wustl.edu	37	14	67770295	67770295	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	14	67770295	67770295	G	A	SNP	MPP5	ENST00000261681	human	ensembl	70_37	+1	known	silent	c.1020	p.P340	0.893	superfamily_SH3_domain,superfamily_PDZ	pfam_Guanylate_kin,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP5	HGNC
MRPL22	29093	genome.wustl.edu	37	5	154330430	154330430	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	5	154330430	154330430	C	T	SNP	MRPL22	ENST00000523037	human	ensembl	70_37	+1	known	nonsense	c.127	p.R43*	0.035	NULL	pfam_Ribosomal_L22,superfamily_Ribosomal_L22	-	no_errors	MRPL22	HGNC
MST4	51765	genome.wustl.edu	37	X	131208175	131208175	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	X	131208175	131208175	C	T	SNP	MST4	ENST00000394334	human	ensembl	70_37	+1	known	silent	c.1239	p.D413	0.999	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MST4	Uniprot_genename
NLRP6	171389	genome.wustl.edu	37	11	284302	284302	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	284302	284302	G	A	SNP	NLRP6	ENST00000312165	human	ensembl	70_37	+1	known	silent	c.2274	p.L758	0.691	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP6	HGNC
NUP210L	91181	genome.wustl.edu	37	1	153995690	153995690	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	153995690	153995690	C	T	SNP	NUP210L	ENST00000368559	human	ensembl	70_37	-1	known	silent	c.4206	p.L1402	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC
OR5P2	120065	genome.wustl.edu	37	11	7818375	7818375	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	7818375	7818375	G	A	SNP	OR5P2	ENST00000329434	human	ensembl	70_37	-1	known	missense	c.115	p.L39F	0.824	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC
OR8U1	219417	genome.wustl.edu	37	11	56143175	56143175	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	56143175	56143175	C	T	SNP	OR8U1	ENST00000302270	human	ensembl	70_37	+1	known	missense	c.76	p.P26S	0.003	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8U1	HGNC
OSBPL3	26031	genome.wustl.edu	37	7	24874252	24874252	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	7	24874252	24874252	C	T	SNP	OSBPL3	ENST00000313367	human	ensembl	70_37	-1	known	silent	c.1599	p.R533	0.448	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC
PCDH11X	27328	genome.wustl.edu	37	X	91090517	91090517	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	X	91090517	91090517	C	T	SNP	PCDH11X	ENST00000373094	human	ensembl	70_37	+1	known	missense	c.14	p.S5F	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC
PCDHB11	56125	genome.wustl.edu	37	5	140580689	140580689	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	5	140580689	140580689	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	70_37	+1	known	missense	c.1342	p.A448T	0.467	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC
PIK3C2A	5286	genome.wustl.edu	37	11	17118705	17118705	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	17118705	17118705	G	A	SNP	PIK3C2A	ENST00000265970	human	ensembl	70_37	-1	known	missense	c.4225	p.L1409F	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_Ca-dep,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC
PLA2R1	22925	genome.wustl.edu	37	2	160901448	160901448	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	2	160901448	160901448	G	A	SNP	PLA2R1	ENST00000283243	human	ensembl	70_37	-1	known	silent	c.330	p.L110	0.000	superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC
PLXNA2	5362	genome.wustl.edu	37	1	208224391	208224391	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	1	208224391	208224391	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	70_37	-1	known	missense	c.3218	p.R1073K	1.000	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC
PPIL1	51645	genome.wustl.edu	37	6	36823502	36823503	+	RNA	INS	-	-	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	6	36823502	36823503	-	A	INS	PPIL1	ENST00000483552	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PPIL1	HGNC
PTGER4	5734	genome.wustl.edu	37	5	40681122	40681122	+	Silent	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	5	40681122	40681122	C	T	SNP	PTGER4	ENST00000302472	human	ensembl	70_37	+1	known	silent	c.27	p.S9	0.065	prints_Prost_EP4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC
PTPRG	5793	genome.wustl.edu	37	3	62253428	62253428	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	3	62253428	62253428	G	A	SNP	PTPRG	ENST00000474889	human	ensembl	70_37	+1	known	nonsense	c.2808	p.W936*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC
PTPRK	5796	genome.wustl.edu	37	6	128505667	128505667	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	6	128505667	128505667	C	T	SNP	PTPRK	ENST00000368227	human	ensembl	70_37	-1	known	missense	c.1072	p.E358K	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC
RNF111	54778	genome.wustl.edu	37	15	59387291	59387292	+	RNA	INS	-	-	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	15	59387291	59387292	-	T	INS	RNF111	ENST00000560080	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.977:0.995	-	-	-	no_errors	RNF111	HGNC
SLC5A6	8884	genome.wustl.edu	37	2	27426071	27426071	+	RNA	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	2	27426071	27426071	G	A	SNP	SLC5A6	ENST00000461319	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC5A6	HGNC
SMARCA2	6595	genome.wustl.edu	37	9	2086856	2086856	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	9	2086856	2086856	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	70_37	+1	known	missense	c.2554	p.E852K	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC
STAT2	6773	genome.wustl.edu	37	12	56737713	56737713	+	Missense_Mutation	SNP	A	A	G			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	12	56737713	56737713	A	G	SNP	STAT2	ENST00000314128	human	ensembl	70_37	-1	known	missense	c.2309	p.V770A	0.000	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC
TBCB	1155	genome.wustl.edu	37	19	36612624	36612624	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	19	36612624	36612624	C	T	SNP	TBCB	ENST00000589308	human	ensembl	70_37	+1	putative	missense	c.398	p.A133V	0.488	NULL	superfamily_CAP-Gly_domain	-	no_errors	TBCB	HGNC
TCEB3CL	728929	genome.wustl.edu	37	18	44549025	44549026	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	18	44549025	44549026	-	GC	INS	TCEB3CL	ENST00000451265	human	ensembl	70_37	-1	known	frame_shift_ins	c.1274_1273	p.Q425fs	1.000:1.000	pfam_RNA_pol_II_trans_fac_SIII_A	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3CL	HGNC
TFAP2B	7021	genome.wustl.edu	37	6	50803940	50803940	+	Silent	SNP	G	G	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	6	50803940	50803940	G	T	SNP	TFAP2B	ENST00000263046	human	ensembl	70_37	+1	known	silent	c.795	p.R265	0.935	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC
TINAG	27283	genome.wustl.edu	37	6	54214628	54214628	+	Nonsense_Mutation	SNP	T	T	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	6	54214628	54214628	T	A	SNP	TINAG	ENST00000259782	human	ensembl	70_37	+1	known	nonsense	c.1014	p.C338*	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC
TNK2	10188	genome.wustl.edu	37	3	195610077	195610077	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	3	195610077	195610077	C	T	SNP	TNK2	ENST00000381916	human	ensembl	70_37	-1	known	missense	c.749	p.R250Q	0.976	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_GTPase_binding,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TNK2	HGNC
TNNC2	7125	genome.wustl.edu	37	20	44453153	44453153	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	20	44453153	44453153	G	A	SNP	TNNC2	ENST00000372555	human	ensembl	70_37	-1	known	silent	c.180	p.I60	0.999	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TNNC2	HGNC
TRIM51	84767	genome.wustl.edu	37	11	55653082	55653082	+	Missense_Mutation	SNP	C	C	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	11	55653082	55653082	C	T	SNP	TRIM51	ENST00000449290	human	ensembl	70_37	+1	known	missense	c.178	p.R60W	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC
TSN	7247	genome.wustl.edu	37	2	122516333	122516333	+	Missense_Mutation	SNP	A	A	G			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	2	122516333	122516333	A	G	SNP	TSN	ENST00000389682	human	ensembl	70_37	+1	known	missense	c.208	p.T70A	1.000	pfam_Translin,superfamily_Translin	pfam_Translin,superfamily_Translin	-	no_errors	TSN	HGNC
TYSND1	219743	genome.wustl.edu	37	10	71899626	71899626	+	RNA	SNP	C	C	G			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	10	71899626	71899626	C	G	SNP	TYSND1	ENST00000479086	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TYSND1	HGNC
UCKL1	54963	genome.wustl.edu	37	20	62575995	62575995	+	Silent	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	20	62575995	62575995	G	A	SNP	UCKL1	ENST00000354216	human	ensembl	70_37	-1	known	silent	c.747	p.I249	0.976	pfam_PRK/URK,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_CPT,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC
USP40	55230	genome.wustl.edu	37	2	234429677	234429677	+	Missense_Mutation	SNP	G	G	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	2	234429677	234429677	G	C	SNP	USP40	ENST00000450966	human	ensembl	70_37	-1	known	missense	c.2318	p.S773C	0.928	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP40	HGNC
UTP14A	10813	genome.wustl.edu	37	X	129059022	129059022	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	X	129059022	129059022	G	A	SNP	UTP14A	ENST00000394422	human	ensembl	70_37	+1	known	missense	c.1600	p.E534K	0.016	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC
ZC3H3	23144	genome.wustl.edu	37	8	144557574	144557574	+	Missense_Mutation	SNP	G	G	A			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	8	144557574	144557574	G	A	SNP	ZC3H3	ENST00000262577	human	ensembl	70_37	-1	known	missense	c.1897	p.R633C	0.144	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC
ZDHHC11B	653082	genome.wustl.edu	37	5	711855	711856	+	RNA	INS	-	-	TA			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	5	711855	711856	-	TA	INS	ZDHHC11B	ENST00000522356	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.055:0.021	-	-	-	no_errors	ZDHHC11B	HGNC
ZDHHC12	84885	genome.wustl.edu	37	9	131486103	131486103	+	RNA	SNP	G	G	C			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	9	131486103	131486103	G	C	SNP	ZDHHC12	ENST00000467312	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZDHHC12	HGNC
ZNF250	58500	genome.wustl.edu	37	8	146107571	146107571	+	Missense_Mutation	SNP	G	G	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	8	146107571	146107571	G	T	SNP	ZNF250	ENST00000292579	human	ensembl	70_37	-1	known	missense	c.1012	p.P338T	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF250	HGNC
ZNF728	388523	genome.wustl.edu	37	19	23171134	23171134	+	Silent	SNP	G	G	T			TCGA-HM-A3JK-01A-11D-A21Q-09	TCGA-HM-A3JK-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	efaa9ff8-bd77-417b-b6f6-232110c585aa	a6f880ce-99d3-4975-a271-5cae1c433e76	19	23171134	23171134	G	T	SNP	ZNF728	ENST00000594710	human	ensembl	70_37	-1	novel	silent	c.123	p.V41	0.976	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF728	HGNC
