Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ASXL1	171023	hgsc.bcm.edu	36	20	30488109	30488110	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015338	exon12	c.3933_3934insG	p.A1311fs	.	.	.
SNAP29	9342	hgsc.bcm.edu	36	22	19554735	19554736	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004782	exon2	c.348_349insG	p.F116fs	.	.	.
BTBD7	55727	hgsc.bcm.edu	36	14	92832097	92832098	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002860	exon2	c.54_55insG	p.G18fs	.	.	.
NCAPD3	23310	hgsc.bcm.edu	36	11	133553795	133553796	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015261	exon22	c.2726_2727insC	p.Q909fs	.	.	.
XYLT2	64132	hgsc.bcm.edu	36	17	45788965	45788966	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022167	exon8	c.1577_1578insC	p.Y526fs	.	.	.
MAPKBP1	23005	hgsc.bcm.edu	36	15	39894787	39894788	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128608	exon12	c.1227_1228insC	p.L409fs	.	.	.
CNKSR2	22866	hgsc.bcm.edu	36	X	21455007	21455008	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168649	exon9	c.912_913insC	p.I304fs	.	.	.
CEP135	9662	hgsc.bcm.edu	36	4	56580320	56580321	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025009	exon23	c.3057_3058insA	p.L1019fs	.	.	.
COL5A1	1289	hgsc.bcm.edu	36	9	136833649	136833650	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000093	exon38	c.2981_2982insC	p.G994fs	.	.	.
VPS13A	23230	hgsc.bcm.edu	36	9	79136756	79136757	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018038	exon46	c.6002_6003insT	p.H2001fs	.	.	.
ENOX1	55068	hgsc.bcm.edu	36	13	42833419	42833420	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127615	exon6	c.378_379insA	p.N126fs	.	.	.
HPS1	3257	hgsc.bcm.edu	36	10	100176976	100176977	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000195	exon11	c.973_974insC	p.M325fs	.	.	.
LRRC20	55222	hgsc.bcm.edu	36	10	71731123	71731124	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018239	exon4	c.398_399insC	p.L133fs	.	.	.
PCDHB2	56133	hgsc.bcm.edu	36	5	140455817	140455818	+	In_Frame_Ins	INS	-	-	CATCAC	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018936	exon1	c.1259_1260insCATCAC	p.N420delinsNIT	.	.	.
FBXO24	26261	hgsc.bcm.edu	36	7	100035617	100035617	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001163499	exon9	c.C1198A	p.L400M	.	.	.
EPHB4	2050	hgsc.bcm.edu	36	7	100243048	100243048	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004444	exon13	c.G2209A	p.V737I	.	.	.
SERPINE1	5054	hgsc.bcm.edu	36	7	100563810	100563810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000602	exon5	c.C815T	p.A272V	.	.	.
SLC26A5	375611	hgsc.bcm.edu	36	7	102838076	102838076	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206884	exon7	c.G727A	p.V243M	.	.	.
RELN	5649	hgsc.bcm.edu	36	7	102949765	102949765	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005045	exon48	c.A7608G	p.G2536G	.	.	.
PUS7	54517	hgsc.bcm.edu	36	7	104935885	104935885	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019042	exon2	c.T311C	p.M104T	.	.	.
LRRN3	54674	hgsc.bcm.edu	36	7	110551453	110551453	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018334	exon2	c.A1389C	p.K463N	.	.	.
C7orf58	79974	hgsc.bcm.edu	36	7	120443122	120443122	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024913	exon3	c.G417A	p.P139P	.	.	.
SND1	27044	hgsc.bcm.edu	36	7	127519294	127519294	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014390	exon24	c.G2681A	p.R894H	.	.	.
WDR91	29062	hgsc.bcm.edu	36	7	134545007	134545007	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014149	exon2	c.T164C	p.V55A	.	.	.
PTN	5764	hgsc.bcm.edu	36	7	136588909	136588909	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002825	exon3	c.A131T	p.K44M	.	.	.
TBXAS1	6916	hgsc.bcm.edu	36	7	139353396	139353396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001061	exon10	c.C1174T	p.P392S	.	.	.
AGK	55750	hgsc.bcm.edu	36	7	140980236	140980236	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018238	exon10	c.G655A	p.V219I	.	.	.
CASP2	835	hgsc.bcm.edu	36	7	142698782	142698782	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032982	exon2	c.T102C	p.P34P	.	.	.
CLCN1	1180	hgsc.bcm.edu	36	7	142746817	142746817	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000083	exon14	c.T1563C	p.P521P	.	.	.
GIMAP8	155038	hgsc.bcm.edu	36	7	149795278	149795278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175571	exon2	c.C559T	p.R187C	.	.	.
NUPL2	11097	hgsc.bcm.edu	36	7	23191289	23191289	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007342	exon2	c.C197T	p.S66F	.	.	.
ELMO1	9844	hgsc.bcm.edu	36	7	37278009	37278009	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014800	exon5	c.C196T	p.R66C	.	.	.
DBNL	28988	hgsc.bcm.edu	36	7	44062961	44062961	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014063	exon5	c.A408G	p.S136S	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47849152	47849152	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138295	exon34	c.C5378T	p.P1793L	.	.	.
EGFR	1956	hgsc.bcm.edu	36	7	55192924	55192924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201282	exon11	c.G1282A	p.G428S	.	.	.
ZNF713	349075	hgsc.bcm.edu	36	7	55958439	55958439	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182633	exon2	c.G139A	p.V47M	.	.	.
CLIP2	7461	hgsc.bcm.edu	36	7	73453774	73453774	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003388	exon16	c.A3070G	p.I1024V	.	.	.
KIAA1324L	222223	hgsc.bcm.edu	36	7	86360288	86360288	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152748	exon19	c.A2249C	p.K750T	.	.	.
DMTF1	9988	hgsc.bcm.edu	36	7	86649558	86649558	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142327	exon10	c.G789A	p.R263R	.	.	.
AKAP9	10142	hgsc.bcm.edu	36	7	91564928	91564928	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147185	exon42	c.A10467G	p.K3489K	.	.	.
COL1A2	1278	hgsc.bcm.edu	36	7	93887664	93887664	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000089	exon36	c.C2159G	p.A720G	.	.	.
DLX5	1749	hgsc.bcm.edu	36	7	96488035	96488035	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005221	exon3	c.G819A	p.P273P	.	.	.
TAC1	6863	hgsc.bcm.edu	36	7	97207141	97207141	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013997	exon6	c.A318G	p.A106A	.	.	.
ARPC1B	10095	hgsc.bcm.edu	36	7	98821332	98821332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005720	exon2	c.G59A	p.R20H	.	.	.
AZGP1	563	hgsc.bcm.edu	36	7	99407543	99407543	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185	exon2	c.C99A	p.I33I	.	.	.
GPC2	221914	hgsc.bcm.edu	36	7	99611273	99611273	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152742	exon3	c.A506G	p.Q169R	.	.	.
SNAP25	6616	hgsc.bcm.edu	36	20	10213390	10213390	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130811	exon4	c.A133C	p.R45R	.	.	.
JAG1	182	hgsc.bcm.edu	36	20	10570537	10570537	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000214	exon22	c.C2576A	p.S859X	.	.	.
KIF16B	55614	hgsc.bcm.edu	36	20	16335053	16335053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024704	exon16	c.C1661T	p.P554L	.	.	.
TGM3	7053	hgsc.bcm.edu	36	20	2263876	2263876	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003245	exon11	c.T1757A	p.V586E	.	.	.
COX4I2	84701	hgsc.bcm.edu	36	20	29691455	29691455	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032609	exon3	c.C141T	p.P47P	.	.	.
UBOX5	22888	hgsc.bcm.edu	36	20	3050778	3050778	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014948	exon3	c.C507T	p.H169H	.	.	.
FAM83C	128876	hgsc.bcm.edu	36	20	33338525	33338525	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178468	exon4	c.A1471G	p.T491A	.	.	.
EPB41L1	2036	hgsc.bcm.edu	36	20	34236613	34236613	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012156	exon7	c.G727A	p.A243T	.	.	.
EPB41L1	2036	hgsc.bcm.edu	36	20	34239080	34239080	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012156	exon8	c.T854C	p.V285A	.	.	.
SMOX	54498	hgsc.bcm.edu	36	20	4103822	4103822	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175841	exon2	c.C120T	p.A40A	.	.	.
RIMS4	140730	hgsc.bcm.edu	36	20	42833444	42833444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182970	exon2	c.C122T	p.A41V	.	.	.
PCIF1	63935	hgsc.bcm.edu	36	20	44009176	44009176	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022104	exon15	c.C1671T	p.C557C	.	.	.
ELMO2	63916	hgsc.bcm.edu	36	20	44429501	44429501	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182764	exon21	c.C2068T	p.R690W	.	.	.
SULF2	55959	hgsc.bcm.edu	36	20	45746683	45746683	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198596	exon6	c.C787T	p.R263C	.	.	.
PREX1	57580	hgsc.bcm.edu	36	20	46726207	46726207	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020820	exon14	c.T1596C	p.R532R	.	.	.
SLC9A8	23315	hgsc.bcm.edu	36	20	47930884	47930884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015266	exon13	c.G1175A	p.G392D	.	.	.
PTPN1	5770	hgsc.bcm.edu	36	20	48629214	48629214	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002827	exon7	c.T805G	p.F269V	.	.	.
ATP9A	10079	hgsc.bcm.edu	36	20	49667457	49667457	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006045	exon22	c.C2394A	p.C798X	.	.	.
NDRG2	57447	hgsc.bcm.edu	36	14	20560472	20560472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016250	exon4	c.G100A	p.G34S	.	.	.
OR5AU1	390445	hgsc.bcm.edu	36	14	20693090	20693090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004731	exon1	c.G935A	p.R312H	.	.	.
SALL2	6297	hgsc.bcm.edu	36	14	21074824	21074824	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005407	exon1	c.C72T	p.N24N	.	.	.
SDCCAG1	9147	hgsc.bcm.edu	36	14	49350506	49350506	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004713	exon18	c.T1694C	p.V565A	.	.	.
KTN1	3895	hgsc.bcm.edu	36	14	55148922	55148922	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004986	exon2	c.G403A	p.A135T	.	.	.
HIF1A	3091	hgsc.bcm.edu	36	14	61273362	61273362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181054	exon9	c.G1031A	p.G344D	.	.	.
SIPA1L1	26037	hgsc.bcm.edu	36	14	71125251	71125251	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015556	exon2	c.A909G	p.K303K	.	.	.
WDR21A	26094	hgsc.bcm.edu	36	14	72476314	72476314	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001163509	exon3	c.C110T	p.T37M	.	.	.
COQ6	51004	hgsc.bcm.edu	36	14	73497962	73497962	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182476	exon10	c.C1146A	p.G382G	.	.	.
ABCD4	5826	hgsc.bcm.edu	36	14	73831625	73831625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005050	exon7	c.C698T	p.A233V	.	.	.
ISM2	145501	hgsc.bcm.edu	36	14	77020452	77020452	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182509	exon3	c.C594T	p.H198H	.	.	.
ADCK1	57143	hgsc.bcm.edu	36	14	77462001	77462001	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142545	exon8	c.C946T	p.R316X	.	.	.
STON2	85439	hgsc.bcm.edu	36	14	80813063	80813063	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033104	exon4	c.C2345T	p.A782V	.	.	.
GGT5	2687	hgsc.bcm.edu	36	22	22945979	22945979	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004121	exon12	c.G1720A	p.V574I	.	.	.
CRYBB1	1414	hgsc.bcm.edu	36	22	25338121	25338121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001887	exon3	c.C214T	p.R72C	.	.	.
EIF4ENIF1	56478	hgsc.bcm.edu	36	22	30181179	30181179	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019843	exon9	c.G1222C	p.D408H	.	.	.
MYH9	4627	hgsc.bcm.edu	36	22	35014867	35014867	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002473	exon33	c.T4622C	p.L1541P	.	.	.
TMEM184B	25829	hgsc.bcm.edu	36	22	36957260	36957260	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012264	exon4	c.C385A	p.L129M	.	.	.
KDELR3	11015	hgsc.bcm.edu	36	22	37207236	37207236	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016657	exon4	c.G425A	p.G142E	.	.	.
KEAP1	9817	hgsc.bcm.edu	36	19	10460969	10460969	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203500	exon5	c.G1607A	p.R536H	.	.	.
USHBP1	83878	hgsc.bcm.edu	36	19	17228281	17228281	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031941	exon9	c.G1469T	p.R490M	.	.	.
DDA1	79016	hgsc.bcm.edu	36	19	17286159	17286159	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024050	exon3	c.T97C	p.S33P	.	.	.
FCHO1	23149	hgsc.bcm.edu	36	19	17754828	17754828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161359	exon22	c.G1790A	p.C597Y	.	.	.
JAK3	3718	hgsc.bcm.edu	36	19	17812106	17812106	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000215	exon9	c.C1187A	p.P396H	.	.	.
ZNF536	9745	hgsc.bcm.edu	36	19	35627946	35627946	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014717	exon2	c.G1637A	p.R546H	.	.	.
ITGB1BP3	27231	hgsc.bcm.edu	36	19	3892100	3892100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170678	exon7	c.G427A	p.G143S	.	.	.
ZNF790	388536	hgsc.bcm.edu	36	19	42001544	42001544	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206894	exon5	c.C1542A	p.A514A	.	.	.
ZNF573	126231	hgsc.bcm.edu	36	19	42922182	42922182	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172691	exon5	c.G1043T	p.R348I	.	.	.
FBXO27	126433	hgsc.bcm.edu	36	19	44207950	44207950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178820	exon6	c.G793A	p.G265S	.	.	.
FBXO27	126433	hgsc.bcm.edu	36	19	44213703	44213703	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178820	exon3	c.C462T	p.F154F	.	.	.
SUPT5H	6829	hgsc.bcm.edu	36	19	44647355	44647355	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003169	exon10	c.C702A	p.H234Q	.	.	.
SERTAD3	29946	hgsc.bcm.edu	36	19	45639701	45639701	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203344	exon2	c.C127T	p.R43C	.	.	.
ZNF180	7733	hgsc.bcm.edu	36	19	49673389	49673389	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013256	exon5	c.T1149C	p.C383C	.	.	.
CEACAM19	56971	hgsc.bcm.edu	36	19	49875438	49875438	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127893	exon5	c.A698G	p.H233R	.	.	.
PRKD2	25865	hgsc.bcm.edu	36	19	51873617	51873617	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079881	exon17	c.C2214T	p.G738G	.	.	.
GLTSCR2	29997	hgsc.bcm.edu	36	19	52942099	52942099	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015710	exon2	c.A288G	p.K96K	.	.	.
ELSPBP1	64100	hgsc.bcm.edu	36	19	53209359	53209359	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022142	exon3	c.A190G	p.K64E	.	.	.
RASIP1	54922	hgsc.bcm.edu	36	19	53919853	53919853	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017805	exon9	c.G2304A	p.V768V	.	.	.
SLC17A7	57030	hgsc.bcm.edu	36	19	54631751	54631751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020309	exon2	c.G182A	p.R61H	.	.	.
SIGLEC7	27036	hgsc.bcm.edu	36	19	56337768	56337768	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014385	exon1	c.C330T	p.I110I	.	.	.
SIGLEC12	89858	hgsc.bcm.edu	36	19	56696448	56696448	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053003	exon1	c.A352G	p.T118A	.	.	.
NLRP11	204801	hgsc.bcm.edu	36	19	61013372	61013372	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145007	exon5	c.C416T	p.T139I	.	.	.
ZIK1	284307	hgsc.bcm.edu	36	19	62793298	62793298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010879	exon4	c.G307A	p.E103K	.	.	.
CLPP	8192	hgsc.bcm.edu	36	19	6317341	6317341	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006012	exon5	c.G628A	p.A210T	.	.	.
SBSN	374897	hgsc.bcm.edu	36	19	40710886	40710887	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166034	exon1	c.137_138del	p.46_46del	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113423014	113423014	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon42	c.A6520G	p.T2174A	.	.	.
FBXO32	114907	hgsc.bcm.edu	36	8	124594749	124594749	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058229	exon6	c.A521G	p.Y174C	.	.	.
ADCY8	114	hgsc.bcm.edu	36	8	131985359	131985359	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001115	exon7	c.T1752G	p.T584T	.	.	.
NDRG1	10397	hgsc.bcm.edu	36	8	134340614	134340614	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135242	exon6	c.C368A	p.P123H	.	.	.
PARP10	84875	hgsc.bcm.edu	36	8	145130174	145130174	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032789	exon7	c.C1767T	p.D589D	.	.	.
EFHA2	286097	hgsc.bcm.edu	36	8	16966004	16966004	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181723	exon2	c.A422G	p.Y141C	.	.	.
NAT2	10	hgsc.bcm.edu	36	8	18302063	18302063	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000015	exon2	c.A270T	p.G90G	.	.	.
CSGALNACT1	55790	hgsc.bcm.edu	36	8	19320450	19320450	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018371	exon8	c.G1224A	p.Q408Q	.	.	.
PPP3CC	5533	hgsc.bcm.edu	36	8	22436117	22436117	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005605	exon8	c.C853T	p.R285X	.	.	.
DOCK5	80005	hgsc.bcm.edu	36	8	25254357	25254357	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024940	exon23	c.G2375A	p.R792H	.	.	.
BNIP3L	665	hgsc.bcm.edu	36	8	26304805	26304805	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004331	exon2	c.A230G	p.D77G	.	.	.
FBXO16	157574	hgsc.bcm.edu	36	8	28365740	28365740	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172366	exon6	c.C680T	p.T227I	.	.	.
FZD3	7976	hgsc.bcm.edu	36	8	28440891	28440891	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145866	exon4	c.G695A	p.R232H	.	.	.
NRG1	3084	hgsc.bcm.edu	36	8	32740905	32740905	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013957	exon12	c.G1357A	p.V453M	.	.	.
C8orf4	56892	hgsc.bcm.edu	36	8	40130372	40130372	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020130	exon1	c.C164T	p.S55F	.	.	.
HOOK3	84376	hgsc.bcm.edu	36	8	42982176	42982176	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032410	exon18	c.T1685C	p.L562P	.	.	.
CYP7A1	1581	hgsc.bcm.edu	36	8	59571763	59571763	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000780	exon3	c.G862T	p.A288S	.	.	.
CYP7B1	9420	hgsc.bcm.edu	36	8	65690265	65690265	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004820	exon4	c.G929A	p.R310Q	.	.	.
AGPAT5	55326	hgsc.bcm.edu	36	8	6592741	6592741	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018361	exon6	c.G729A	p.E243E	.	.	.
PREX2	80243	hgsc.bcm.edu	36	8	69135513	69135513	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025170	exon11	c.T1284C	p.P428P	.	.	.
SULF1	23213	hgsc.bcm.edu	36	8	70713361	70713361	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128205	exon20	c.G2355A	p.T785T	.	.	.
EYA1	2138	hgsc.bcm.edu	36	8	72346625	72346625	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172060	exon8	c.T789C	p.R263R	.	.	.
CDH17	1015	hgsc.bcm.edu	36	8	95251831	95251831	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144663	exon9	c.G1036A	p.V346I	.	.	.
RAD54B	25788	hgsc.bcm.edu	36	8	95461583	95461583	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012415	exon12	c.A2213G	p.Y738C	.	.	.
KDM5D	8284	hgsc.bcm.edu	36	Y	20337972	20337972	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004653	exon14	c.G1734A	p.Q578Q	.	.	.
EXTL2	2135	hgsc.bcm.edu	36	1	101115664	101115664	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033025	exon3	c.G389A	p.R130K	.	.	.
CELSR2	1952	hgsc.bcm.edu	36	1	109610321	109610321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001408	exon15	c.G5983A	p.A1995T	.	.	.
SLC6A17	388662	hgsc.bcm.edu	36	1	110541586	110541586	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010898	exon11	c.A1657G	p.M553V	.	.	.
MOV10	4343	hgsc.bcm.edu	36	1	113043863	113043863	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020963	exon18	c.C2617T	p.R873X	.	.	.
SYT6	148281	hgsc.bcm.edu	36	1	114483808	114483808	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205848	exon2	c.G209A	p.R70H	.	.	.
ATP1A1	476	hgsc.bcm.edu	36	1	116733588	116733588	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000701	exon8	c.C759A	p.T253T	.	.	.
CLCN6	1185	hgsc.bcm.edu	36	1	11821073	11821073	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001286	exon21	c.C2390T	p.P797L	.	.	.
WDR3	10885	hgsc.bcm.edu	36	1	118285025	118285025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006784	exon7	c.G728A	p.G243E	.	.	.
MFN2	9927	hgsc.bcm.edu	36	1	11989706	11989706	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127660	exon16	c.G1882A	p.A628T	.	.	.
NOTCH2	4853	hgsc.bcm.edu	36	1	120309599	120309599	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024408	exon10	c.G1681T	p.G561C	.	.	.
PIAS3	10401	hgsc.bcm.edu	36	1	144292830	144292830	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006099	exon9	c.G1054A	p.A352T	.	.	.
SETDB1	9869	hgsc.bcm.edu	36	1	149188361	149188361	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145415	exon11	c.C1407A	p.P469P	.	.	.
CGN	57530	hgsc.bcm.edu	36	1	149774716	149774716	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020770	exon17	c.C3011T	p.T1004I	.	.	.
TUFT1	7286	hgsc.bcm.edu	36	1	149803060	149803060	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020127	exon4	c.G294A	p.Q98Q	.	.	.
CRNN	49860	hgsc.bcm.edu	36	1	150648866	150648866	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016190	exon3	c.G1316T	p.G439V	.	.	.
RP1-21O18.1	23254	hgsc.bcm.edu	36	1	15262703	15262703	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201628	exon7	c.C1096T	p.Q366X	.	.	.
C1orf2	10712	hgsc.bcm.edu	36	1	153490040	153490040	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198264	exon2	c.G333T	p.T111T	.	.	.
RUSC1	23623	hgsc.bcm.edu	36	1	153564583	153564583	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014328	exon8	c.G1026A	p.L342L	.	.	.
DAP3	7818	hgsc.bcm.edu	36	1	153968361	153968361	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199849	exon12	c.T906C	p.H302H	.	.	.
SMG5	23381	hgsc.bcm.edu	36	1	154511098	154511098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015327	exon5	c.G458A	p.C153Y	.	.	.
OR6N1	128372	hgsc.bcm.edu	36	1	157002833	157002833	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005185	exon1	c.G264T	p.E88D	.	.	.
CADM3	57863	hgsc.bcm.edu	36	1	157433349	157433349	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021189	exon8	c.T929C	p.L310P	.	.	.
CCDC19	25790	hgsc.bcm.edu	36	1	158126907	158126907	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012337	exon3	c.G259T	p.V87F	.	.	.
IGSF8	93185	hgsc.bcm.edu	36	1	158329518	158329518	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052868	exon4	c.C1132T	p.H378Y	.	.	.
WDR42A	50717	hgsc.bcm.edu	36	1	158459132	158459132	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015726	exon11	c.A1373G	p.H458R	.	.	.
ITLN2	142683	hgsc.bcm.edu	36	1	159189120	159189120	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080878	exon3	c.C107T	p.S36L	.	.	.
B4GALT3	8703	hgsc.bcm.edu	36	1	159412342	159412342	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199874	exon3	c.A133C	p.T45P	.	.	.
OLFML2B	25903	hgsc.bcm.edu	36	1	160236682	160236682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015441	exon5	c.G794A	p.R265Q	.	.	.
TMCO1	54499	hgsc.bcm.edu	36	1	163979081	163979081	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019026	exon6	c.A415G	p.T139A	.	.	.
POGK	57645	hgsc.bcm.edu	36	1	165085807	165085807	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017542	exon5	c.G1367T	p.R456L	.	.	.
TNFSF4	7292	hgsc.bcm.edu	36	1	171422329	171422329	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003326	exon3	c.C501T	p.G167G	.	.	.
TNN	63923	hgsc.bcm.edu	36	1	173364385	173364385	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022093	exon15	c.C3210T	p.C1070C	.	.	.
ASTN1	460	hgsc.bcm.edu	36	1	175100110	175100110	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004319	exon23	c.G3818A	p.R1273K	.	.	.
RCC2	55920	hgsc.bcm.edu	36	1	17612192	17612192	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136204	exon9	c.A1277G	p.D426G	.	.	.
RCC2	55920	hgsc.bcm.edu	36	1	17621840	17621840	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136204	exon4	c.C603T	p.H201H	.	.	.
LAMC1	3915	hgsc.bcm.edu	36	1	181363070	181363070	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002293	exon17	c.C3031T	p.R1011C	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184235938	184235938	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031935	exon26	c.G4013A	p.C1338Y	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184350575	184350575	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031935	exon74	c.T11278C	p.Y3760H	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195339620	195339620	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018136	exon18	c.G5384T	p.R1795M	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195379326	195379326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018136	exon3	c.G679A	p.A227T	.	.	.
IGFN1	91156	hgsc.bcm.edu	36	1	199453208	199453208	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164586	exon17	c.C9766T	p.P3256S	.	.	.
OPTC	26254	hgsc.bcm.edu	36	1	201731836	201731836	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014359	exon2	c.G80T	p.R27M	.	.	.
CR2	1380	hgsc.bcm.edu	36	1	205716343	205716343	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001006658	exon15	c.G2858A	p.C953Y	.	.	.
CAMK1G	57172	hgsc.bcm.edu	36	1	207846334	207846334	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020439	exon6	c.T482C	p.M161T	.	.	.
KCNK2	3776	hgsc.bcm.edu	36	1	213409291	213409291	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017424	exon4	c.G590T	p.G197V	.	.	.
DUSP10	11221	hgsc.bcm.edu	36	1	219979548	219979548	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007207	exon2	c.G162T	p.K54N	.	.	.
C1orf124	83932	hgsc.bcm.edu	36	1	229540772	229540772	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010984	exon1	c.T20C	p.L7S	.	.	.
SLC35F3	148641	hgsc.bcm.edu	36	1	232525573	232525573	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173508	exon8	c.G1434A	p.Q478Q	.	.	.
GRHL3	57822	hgsc.bcm.edu	36	1	24541970	24541970	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198173	exon11	c.C1287T	p.G429G	.	.	.
C1orf201	90529	hgsc.bcm.edu	36	1	24568879	24568879	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199013	exon7	c.G609A	p.S203S	.	.	.
C1orf150	148823	hgsc.bcm.edu	36	1	245779125	245779125	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145278	exon1	c.T9A	p.N3K	.	.	.
MAN1C1	57134	hgsc.bcm.edu	36	1	25981713	25981713	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020379	exon11	c.C1701T	p.D567D	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26974083	26974083	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006015	exon18	c.G4778T	p.R1593L	.	.	.
SESN2	83667	hgsc.bcm.edu	36	1	28468302	28468302	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031459	exon2	c.C112T	p.R38W	.	.	.
BAI2	576	hgsc.bcm.edu	36	1	31976787	31976787	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001703	exon17	c.A2633G	p.D878G	.	.	.
EIF3I	8668	hgsc.bcm.edu	36	1	32464659	32464659	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003757	exon6	c.C469A	p.L157M	.	.	.
PHC2	1912	hgsc.bcm.edu	36	1	33592604	33592604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198040	exon8	c.C1540T	p.P514S	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33901188	33901188	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052896	exon26	c.C4024T	p.L1342L	.	.	.
C1orf94	84970	hgsc.bcm.edu	36	1	34450568	34450568	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032884	exon6	c.G1125A	p.P375P	.	.	.
THRAP3	9967	hgsc.bcm.edu	36	1	36527815	36527815	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005119	exon5	c.T1608C	p.P536P	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39624086	39624086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012090	exon53	c.G8056A	p.D2686N	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39626459	39626459	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012090	exon54	c.G9172T	p.G3058W	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39661025	39661025	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012090	exon56	c.T9829C	p.L3277L	.	.	.
KCNQ4	9132	hgsc.bcm.edu	36	1	41058203	41058203	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004700	exon6	c.G904T	p.G302C	.	.	.
PTPRF	5792	hgsc.bcm.edu	36	1	43837108	43837108	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130440	exon13	c.G2250A	p.R750R	.	.	.
PTCH2	8643	hgsc.bcm.edu	36	1	45061569	45061569	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166292	exon20	c.G3190A	p.D1064N	.	.	.
LRRC41	10489	hgsc.bcm.edu	36	1	46523947	46523947	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006369	exon4	c.G1169A	p.R390H	.	.	.
FAF1	11124	hgsc.bcm.edu	36	1	50982996	50982996	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007051	exon5	c.C407A	p.P136H	.	.	.
CYP2J2	1573	hgsc.bcm.edu	36	1	60146184	60146184	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000775	exon6	c.A865T	p.T289S	.	.	.
DOCK7	85440	hgsc.bcm.edu	36	1	62767633	62767633	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033407	exon29	c.G3591A	p.R1197R	.	.	.
THAP3	90326	hgsc.bcm.edu	36	1	6611303	6611303	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138350	exon2	c.G232A	p.V78M	.	.	.
PDE4B	5142	hgsc.bcm.edu	36	1	66231297	66231297	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037340	exon1	c.T120C	p.P40P	.	.	.
NEGR1	257194	hgsc.bcm.edu	36	1	71936408	71936408	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173808	exon4	c.A538C	p.K180Q	.	.	.
FPGT	8790	hgsc.bcm.edu	36	1	74442814	74442814	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003838	exon4	c.C495A	p.T165T	.	.	.
C1orf173	127254	hgsc.bcm.edu	36	1	74845102	74845102	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002912	exon10	c.A1260G	p.K420K	.	.	.
VAMP3	9341	hgsc.bcm.edu	36	1	7759887	7759887	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004781	exon3	c.C153T	p.D51D	.	.	.
PER3	8863	hgsc.bcm.edu	36	1	7809222	7809222	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016831	exon16	c.G2029A	p.A677T	.	.	.
PTGFR	5737	hgsc.bcm.edu	36	1	78731107	78731107	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000959	exon2	c.T91A	p.F31I	.	.	.
LPHN2	23266	hgsc.bcm.edu	36	1	82208735	82208735	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012302	exon14	c.T2832G	p.G944G	.	.	.
RERE	473	hgsc.bcm.edu	36	1	8638638	8638638	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012102	exon3	c.T306C	p.D102D	.	.	.
TRPC6	7225	hgsc.bcm.edu	36	11	100867676	100867676	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004621	exon3	c.G949A	p.D317N	.	.	.
RNF141	50862	hgsc.bcm.edu	36	11	10497215	10497215	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016422	exon5	c.C484T	p.R162W	.	.	.
EXPH5	23086	hgsc.bcm.edu	36	11	107889092	107889092	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015065	exon6	c.G2352A	p.P784P	.	.	.
CRYAB	1410	hgsc.bcm.edu	36	11	111284738	111284738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001885	exon3	c.G488A	p.R163H	.	.	.
SORL1	6653	hgsc.bcm.edu	36	11	120987027	120987027	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003105	exon39	c.T5272C	p.Y1758H	.	.	.
OR4D5	219875	hgsc.bcm.edu	36	11	123316434	123316434	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001965	exon1	c.C901A	p.L301M	.	.	.
OR6T1	219874	hgsc.bcm.edu	36	11	123319352	123319352	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005187	exon1	c.T404C	p.L135P	.	.	.
GTF2H1	2965	hgsc.bcm.edu	36	11	18326018	18326018	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142307	exon10	c.C1029T	p.D343D	.	.	.
TH	7054	hgsc.bcm.edu	36	11	2149578	2149578	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000360	exon1	c.C15T	p.D5D	.	.	.
FSHB	2488	hgsc.bcm.edu	36	11	30211876	30211876	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000510	exon3	c.C343T	p.R115X	.	.	.
ARFGAP2	84364	hgsc.bcm.edu	36	11	47144476	47144476	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032389	exon15	c.C1464T	p.D488D	.	.	.
OR5W2	390148	hgsc.bcm.edu	36	11	55438507	55438507	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001960	exon1	c.T128C	p.L43P	.	.	.
OR8H1	219469	hgsc.bcm.edu	36	11	55814493	55814493	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005199	exon1	c.G622A	p.V208M	.	.	.
TMEM132A	54972	hgsc.bcm.edu	36	11	60455762	60455762	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017870	exon6	c.T1045C	p.W349R	.	.	.
CNGA4	1262	hgsc.bcm.edu	36	11	6218156	6218156	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037329	exon4	c.C556A	p.L186I	.	.	.
NRXN2	9379	hgsc.bcm.edu	36	11	64176187	64176187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015080	exon13	c.C2432T	p.T811M	.	.	.
EFEMP2	30008	hgsc.bcm.edu	36	11	65395265	65395265	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016938	exon4	c.C306T	p.P102P	.	.	.
DCHS1	8642	hgsc.bcm.edu	36	11	6604775	6604775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003737	exon14	c.G6071A	p.R2024H	.	.	.
SUV420H1	51111	hgsc.bcm.edu	36	11	67682668	67682668	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017635	exon11	c.A1721G	p.D574G	.	.	.
MYEOV	26579	hgsc.bcm.edu	36	11	68820005	68820005	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138768	exon3	c.T512C	p.V171A	.	.	.
CAPN5	726	hgsc.bcm.edu	36	11	76504176	76504176	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004055	exon6	c.C787T	p.R263C	.	.	.
ALG8	79053	hgsc.bcm.edu	36	11	77512719	77512719	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007027	exon3	c.C364T	p.R122C	.	.	.
CHORDC1	26973	hgsc.bcm.edu	36	11	89578293	89578293	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012124	exon8	c.T652C	p.W218R	.	.	.
DENND5A	23258	hgsc.bcm.edu	36	11	9122369	9122369	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015213	exon19	c.T3155C	p.M1052T	.	.	.
DENND5A	23258	hgsc.bcm.edu	36	11	9181939	9181939	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015213	exon4	c.G793A	p.V265I	.	.	.
ZNF143	7702	hgsc.bcm.edu	36	11	9450875	9450875	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003442	exon3	c.T188C	p.I63T	.	.	.
SBF2	81846	hgsc.bcm.edu	36	11	9940152	9940152	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030962	exon16	c.C1788T	p.V596V	.	.	.
MCHR2	84539	hgsc.bcm.edu	36	6	100502458	100502458	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040179	exon3	c.A293G	p.E98G	.	.	.
RSPH4A	345895	hgsc.bcm.edu	36	6	117060075	117060075	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161664	exon5	c.T1793A	p.I598N	.	.	.
TMEM200A	114801	hgsc.bcm.edu	36	6	130804196	130804196	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052913	exon2	c.T936G	p.A312A	.	.	.
EPB41L2	2037	hgsc.bcm.edu	36	6	131232729	131232729	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199388	exon13	c.C2064A	p.P688P	.	.	.
TAAR5	9038	hgsc.bcm.edu	36	6	132951924	132951924	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003967	exon1	c.T595C	p.F199L	.	.	.
MAP3K5	4217	hgsc.bcm.edu	36	6	137022101	137022101	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005923	exon9	c.T1475C	p.M492T	.	.	.
FBXO30	84085	hgsc.bcm.edu	36	6	146167985	146167985	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032145	exon2	c.C1250A	p.P417H	.	.	.
GRM1	2911	hgsc.bcm.edu	36	6	146761850	146761850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114329	exon8	c.G1982A	p.R661H	.	.	.
PLEKHG1	57480	hgsc.bcm.edu	36	6	151203226	151203226	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029884	exon17	c.A3659G	p.Q1220R	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152692645	152692645	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033071	exon77	c.G14655T	p.K4885N	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152851326	152851326	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033071	exon12	c.A966C	p.E322D	.	.	.
ARID1B	57492	hgsc.bcm.edu	36	6	157543836	157543836	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017519	exon11	c.G3138T	p.K1046N	.	.	.
ZDHHC14	79683	hgsc.bcm.edu	36	6	157934045	157934045	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153746	exon3	c.G444A	p.P148P	.	.	.
SYNJ2	8871	hgsc.bcm.edu	36	6	158374655	158374655	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003898	exon4	c.C666A	p.G222G	.	.	.
SERAC1	84947	hgsc.bcm.edu	36	6	158469185	158469185	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032861	exon10	c.C958T	p.R320C	.	.	.
SERAC1	84947	hgsc.bcm.edu	36	6	158487832	158487832	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032861	exon6	c.C457T	p.R153W	.	.	.
IGF2R	3482	hgsc.bcm.edu	36	6	160397535	160397535	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Visver			SOLID	NM_000876	exon20	c.G2784A	p.T928T	.	.	.
DCDC2	51473	hgsc.bcm.edu	36	6	24465782	24465782	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195610	exon2	c.T176G	p.F59C	.	.	.
ALDH5A1	7915	hgsc.bcm.edu	36	6	24631064	24631064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170740	exon8	c.C1144T	p.R382C	.	.	.
HIST1H4E	8367	hgsc.bcm.edu	36	6	26313157	26313157	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003545	exon1	c.C306T	p.G102G	.	.	.
MYLK4	340156	hgsc.bcm.edu	36	6	2634134	2634134	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001012418	exon4	c.A291G	p.Q97Q	.	.	.
BTN3A1	11119	hgsc.bcm.edu	36	6	26521585	26521585	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145008	exon10	c.G1072A	p.G358R	.	.	.
ZNF192	7745	hgsc.bcm.edu	36	6	28229294	28229294	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006298	exon6	c.G1257A	p.A419A	.	.	.
SERPINB9	5272	hgsc.bcm.edu	36	6	2835501	2835501	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004155	exon7	c.C1026T	p.C342C	.	.	.
GABBR1	2550	hgsc.bcm.edu	36	6	29680374	29680374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021904	exon21	c.G2402A	p.R801Q	.	.	.
TRIM40	135644	hgsc.bcm.edu	36	6	30221765	30221765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138700	exon2	c.C361T	p.R121W	.	.	.
MDC1	9656	hgsc.bcm.edu	36	6	30779886	30779886	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014641	exon10	c.A5053C	p.R1685R	.	.	.
BAT2	7916	hgsc.bcm.edu	36	6	31708363	31708363	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004638	exon16	c.C3934T	p.Q1312X	.	.	.
HSPA1L	3305	hgsc.bcm.edu	36	6	31886342	31886342	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005527	exon2	c.C1387T	p.L463L	.	.	.
SLC44A4	80736	hgsc.bcm.edu	36	6	31939419	31939419	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178044	exon20	c.C1971T	p.N657N	.	.	.
AGPAT1	10554	hgsc.bcm.edu	36	6	32245061	32245061	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032741	exon7	c.C822T	p.D274D	.	.	.
COL11A2	1302	hgsc.bcm.edu	36	6	33254083	33254083	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080681	exon18	c.C1540T	p.R514X	.	.	.
B3GALT4	8705	hgsc.bcm.edu	36	6	33354122	33354122	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003782	exon1	c.C948G	p.H316Q	.	.	.
SLC26A8	116369	hgsc.bcm.edu	36	6	36075748	36075748	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052961	exon4	c.T444C	p.I148I	.	.	.
DNAH8	1769	hgsc.bcm.edu	36	6	38837497	38837497	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001371	exon9	c.T906C	p.T302T	.	.	.
DNAH8	1769	hgsc.bcm.edu	36	6	38958724	38958724	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001371	exon52	c.C7268A	p.P2423Q	.	.	.
DNAH8	1769	hgsc.bcm.edu	36	6	38975553	38975553	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001371	exon60	c.G8436A	p.S2812S	.	.	.
TREM2	54209	hgsc.bcm.edu	36	6	41237215	41237215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018965	exon2	c.G155A	p.R52H	.	.	.
TMEM63B	55362	hgsc.bcm.edu	36	6	44224523	44224523	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018426	exon15	c.C1276T	p.R426X	.	.	.
KLHL31	401265	hgsc.bcm.edu	36	6	53626871	53626871	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003760	exon2	c.A1159G	p.S387G	.	.	.
NRN1	51299	hgsc.bcm.edu	36	6	5944292	5944292	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016588	exon3	c.C345T	p.N115N	.	.	.
KCNQ5	56479	hgsc.bcm.edu	36	6	73844279	73844279	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160133	exon5	c.A866C	p.K289T	.	.	.
SLC17A5	26503	hgsc.bcm.edu	36	6	74408135	74408135	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012434	exon3	c.G525T	p.E175D	.	.	.
FILIP1	27145	hgsc.bcm.edu	36	6	76079730	76079730	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015687	exon5	c.C2538T	p.P846P	.	.	.
FILIP1	27145	hgsc.bcm.edu	36	6	76120113	76120113	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015687	exon4	c.G491A	p.R164H	.	.	.
UBE2CBP	90025	hgsc.bcm.edu	36	6	83824383	83824383	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198920	exon2	c.G155A	p.C52Y	.	.	.
KLHL32	114792	hgsc.bcm.edu	36	6	97639854	97639854	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052904	exon6	c.A543C	p.E181D	.	.	.
SFRS18	25957	hgsc.bcm.edu	36	6	99955643	99955643	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015491	exon11	c.G1912T	p.D638Y	.	.	.
ZNF18	7566	hgsc.bcm.edu	36	17	11834587	11834587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144680	exon6	c.G583A	p.A195T	.	.	.
MYOCD	93649	hgsc.bcm.edu	36	17	12588437	12588437	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146312	exon8	c.A930G	p.Q310Q	.	.	.
INPP5K	51763	hgsc.bcm.edu	36	17	1359321	1359321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016532	exon5	c.C455T	p.P152L	.	.	.
SLC13A2	9058	hgsc.bcm.edu	36	17	23846804	23846804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145976	exon9	c.C1184T	p.S395L	.	.	.
PROCA1	147011	hgsc.bcm.edu	36	17	24055931	24055931	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152465	exon2	c.T149C	p.I50T	.	.	.
PEX12	5193	hgsc.bcm.edu	36	17	30929059	30929059	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000286	exon1	c.C95T	p.A32V	.	.	.
PLXDC1	57125	hgsc.bcm.edu	36	17	34497388	34497388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020405	exon8	c.C905T	p.P302L	.	.	.
CNTNAP1	8506	hgsc.bcm.edu	36	17	38089749	38089749	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003632	exon3	c.G339A	p.P113P	.	.	.
BRCA1	672	hgsc.bcm.edu	36	17	38505356	38505356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007294	exon7	c.G509A	p.R170Q	.	.	.
SLC4A1	6521	hgsc.bcm.edu	36	17	39688631	39688631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000342	exon14	c.C1736T	p.A579V	.	.	.
ADAM11	4185	hgsc.bcm.edu	36	17	40205755	40205755	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002390	exon9	c.G683A	p.R228H	.	.	.
SCRN2	90507	hgsc.bcm.edu	36	17	43272737	43272737	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145023	exon3	c.T175C	p.C59R	.	.	.
MYST2	11143	hgsc.bcm.edu	36	17	45250363	45250363	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199157	exon7	c.C816T	p.R272R	.	.	.
COL1A1	1277	hgsc.bcm.edu	36	17	45623237	45623237	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000088	exon33	c.C2283T	p.G761G	.	.	.
NUP88	4927	hgsc.bcm.edu	36	17	5249240	5249240	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002532	exon6	c.C905T	p.A302V	.	.	.
PPM1D	8493	hgsc.bcm.edu	36	17	56032935	56032935	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003620	exon1	c.G378A	p.K126K	.	.	.
SMURF2	64750	hgsc.bcm.edu	36	17	60010062	60010062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022739	exon7	c.C548T	p.T183M	.	.	.
AXIN2	8313	hgsc.bcm.edu	36	17	60960624	60960624	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004655	exon10	c.C2273T	p.A758V	.	.	.
APOH	350	hgsc.bcm.edu	36	17	61654733	61654733	+	Silent	SNP	C	C	T	rs666	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000042	exon2	c.G108A	p.P36P	.	.	.
ARSG	22901	hgsc.bcm.edu	36	17	63902869	63902869	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014960	exon10	c.G1152A	p.R384R	.	.	.
RNF213	57674	hgsc.bcm.edu	36	17	75946830	75946830	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020914	exon38	c.T11157C	p.S3719S	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7630981	7630981	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020877	exon41	c.G6508A	p.V2170M	.	.	.
CNTROB	116840	hgsc.bcm.edu	36	17	7793488	7793488	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053051	exon19	c.G2647A	p.A883T	.	.	.
MYH10	4628	hgsc.bcm.edu	36	17	8331634	8331634	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005964	exon34	c.C4795T	p.R1599W	.	.	.
MYH10	4628	hgsc.bcm.edu	36	17	8350458	8350458	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005964	exon25	c.G3196A	p.D1066N	.	.	.
WDR16	146845	hgsc.bcm.edu	36	17	9444140	9444140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145054	exon6	c.G668A	p.G223D	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.
SPNS3	201305	hgsc.bcm.edu	36	17	4337918	4337918	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182538	exon12	c.G1519A	p.A507T	SPNS3,large_intestine,NS,Substitution - Missense,0	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519132	7519132	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.C523T	p.R175C	TP53,lung,NS,Substitution - Missense,+1	.	.
HSPA13	6782	hgsc.bcm.edu	36	21	14667828	14667828	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006948	exon5	c.A1397G	p.Q466R	.	.	.
C21orf66	94104	hgsc.bcm.edu	36	21	33042712	33042712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013329	exon11	c.G1892A	p.R631Q	.	.	.
TRAPPC10	7109	hgsc.bcm.edu	36	21	44336286	44336286	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003274	exon19	c.A2925G	p.S975S	.	.	.
MCM3AP	8888	hgsc.bcm.edu	36	21	46489362	46489362	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003906	exon23	c.A4825G	p.I1609V	.	.	.
MCM3AP	8888	hgsc.bcm.edu	36	21	46524372	46524372	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003906	exon4	c.G1630A	p.A544T	.	.	.
PCNT	5116	hgsc.bcm.edu	36	21	46660609	46660609	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006031	exon30	c.G6349A	p.G2117R	.	.	.
TNFRSF17	608	hgsc.bcm.edu	36	16	11967636	11967636	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001192	exon2	c.G214A	p.V72M	.	.	.
TNFRSF17	608	hgsc.bcm.edu	36	16	11969106	11969106	+	Silent	SNP	C	C	T	rs35434482	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001192	exon3	c.C456T	p.G152G	.	.	.
ERCC4	2072	hgsc.bcm.edu	36	16	13949300	13949300	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005236	exon11	c.T2346C	p.N782N	.	.	.
SYT17	51760	hgsc.bcm.edu	36	16	19099256	19099256	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016524	exon4	c.C225T	p.H75H	.	.	.
COG7	91949	hgsc.bcm.edu	36	16	23312117	23312117	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153603	exon15	c.A1940G	p.Q647R	.	.	.
PDPK1	5170	hgsc.bcm.edu	36	16	2587273	2587273	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002613	exon13	c.A1550G	p.H517R	.	.	.
SRRM2	23524	hgsc.bcm.edu	36	16	2755287	2755287	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016333	exon11	c.A4757G	p.D1586G	.	.	.
SRRM2	23524	hgsc.bcm.edu	36	16	2756688	2756688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016333	exon11	c.G6158A	p.R2053H	.	.	.
CLN3	1201	hgsc.bcm.edu	36	16	28396350	28396350	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042432	exon16	c.C1305A	p.C435X	.	.	.
SH2B1	25970	hgsc.bcm.edu	36	16	28791435	28791435	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015503	exon7	c.A1805T	p.E602V	.	.	.
CD2BP2	10421	hgsc.bcm.edu	36	16	30273064	30273064	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006110	exon3	c.G159T	p.E53D	.	.	.
SETD1A	9739	hgsc.bcm.edu	36	16	30882976	30882976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014712	exon6	c.G700A	p.V234M	.	.	.
ITGAD	3681	hgsc.bcm.edu	36	16	31322465	31322465	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005353	exon7	c.G702T	p.V234V	.	.	.
SLC5A2	6524	hgsc.bcm.edu	36	16	31402028	31402028	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003041	exon1	c.G70A	p.A24T	.	.	.
CREBBP	1387	hgsc.bcm.edu	36	16	3748864	3748864	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004380	exon17	c.G3361T	p.G1121X	.	.	.
SHCBP1	79801	hgsc.bcm.edu	36	16	45173298	45173298	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024745	exon13	c.C1863A	p.A621A	.	.	.
SALL1	6299	hgsc.bcm.edu	36	16	49731235	49731235	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002968	exon2	c.A2399G	p.D800G	.	.	.
CDH16	1014	hgsc.bcm.edu	36	16	65507773	65507773	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004062	exon4	c.G190A	p.A64T	.	.	.
DHX38	9785	hgsc.bcm.edu	36	16	70695054	70695054	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014003	exon13	c.C1690G	p.Q564E	.	.	.
PMFBP1	83449	hgsc.bcm.edu	36	16	70721963	70721963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160213	exon12	c.C1172T	p.S391L	.	.	.
MON1B	22879	hgsc.bcm.edu	36	16	75785816	75785816	+	Missense_Mutation	SNP	C	C	T	rs11544785	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014940	exon4	c.C559T	p.R187W	.	.	.
GRIN2A	2903	hgsc.bcm.edu	36	16	9939420	9939420	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134408	exon3	c.G904A	p.A302T	.	.	.
CDH2	1000	hgsc.bcm.edu	36	18	23797428	23797428	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001792	exon15	c.A2405T	p.K802M	.	.	.
SEC11C	90701	hgsc.bcm.edu	36	18	54967749	54967749	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033280	exon2	c.G112A	p.A38T	.	.	.
VPS4B	9525	hgsc.bcm.edu	36	18	59221999	59221999	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004869	exon5	c.C405T	p.D135D	.	.	.
CDH7	1005	hgsc.bcm.edu	36	18	61642898	61642898	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004361	exon6	c.G832T	p.A278S	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	7034737	7034737	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005559	exon7	c.C960T	p.S320S	.	.	.
CNDP1	84735	hgsc.bcm.edu	36	18	70398371	70398371	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032649	exon10	c.T1193C	p.F398S	.	.	.
PTPRM	5797	hgsc.bcm.edu	36	18	8369283	8369283	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002845	exon26	c.T3692G	p.F1231C	.	.	.
BOC	91653	hgsc.bcm.edu	36	3	114480858	114480858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033254	exon12	c.G1886A	p.R629H	.	.	.
CCDC52	152185	hgsc.bcm.edu	36	3	114649630	114649630	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144718	exon16	c.C2371A	p.P791T	.	.	.
SIDT1	54847	hgsc.bcm.edu	36	3	114812563	114812563	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017699	exon18	c.T1739C	p.M580T	.	.	.
PDIA5	10954	hgsc.bcm.edu	36	3	124312490	124312490	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006810	exon7	c.C490T	p.R164W	.	.	.
KALRN	8997	hgsc.bcm.edu	36	3	125500419	125500419	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003947	exon6	c.C1055T	p.T352M	.	.	.
KALRN	8997	hgsc.bcm.edu	36	3	125692258	125692258	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003947	exon30	c.G4418T	p.G1473V	.	.	.
EEFSEC	60678	hgsc.bcm.edu	36	3	129542961	129542961	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021937	exon5	c.C982G	p.P328A	.	.	.
ACAD9	28976	hgsc.bcm.edu	36	3	130111643	130111643	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014049	exon16	c.C1653T	p.S551S	.	.	.
NUDT16	131870	hgsc.bcm.edu	36	3	132584732	132584732	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152395	exon3	c.C445T	p.R149W	.	.	.
TMEM108	66000	hgsc.bcm.edu	36	3	134597485	134597485	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136469	exon6	c.C1693T	p.L565L	.	.	.
CLSTN2	64084	hgsc.bcm.edu	36	3	141765555	141765555	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022131	exon16	c.G2545T	p.A849S	.	.	.
PAQR9	344838	hgsc.bcm.edu	36	3	144163976	144163976	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198504	exon1	c.G893A	p.R298H	.	.	.
CPB1	1360	hgsc.bcm.edu	36	3	150045945	150045945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001871	exon9	c.C823T	p.P275S	.	.	.
CPA3	1359	hgsc.bcm.edu	36	3	150082077	150082077	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001870	exon7	c.A655G	p.N219D	.	.	.
SH3BP5	9467	hgsc.bcm.edu	36	3	15275446	15275446	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018009	exon7	c.G314A	p.R105H	.	.	.
P2RY1	5028	hgsc.bcm.edu	36	3	154036895	154036895	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002563	exon1	c.C634T	p.R212X	.	.	.
PLCH1	23007	hgsc.bcm.edu	36	3	156693282	156693282	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130960	exon17	c.T2201G	p.L734R	.	.	.
PLCH1	23007	hgsc.bcm.edu	36	3	156794508	156794508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130960	exon3	c.G350A	p.R117H	.	.	.
KCNAB1	7881	hgsc.bcm.edu	36	3	157737192	157737192	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172159	exon14	c.C1168T	p.R390C	.	.	.
SCHIP1	29970	hgsc.bcm.edu	36	3	161066707	161066707	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001197108	exon2	c.A125G	p.D42G	.	.	.
BCHE	590	hgsc.bcm.edu	36	3	167030821	167030821	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000055	exon2	c.T695G	p.V232G	.	.	.
SERPINI2	5276	hgsc.bcm.edu	36	3	168667628	168667628	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006217	exon3	c.A387G	p.E129E	.	.	.
TBC1D5	9779	hgsc.bcm.edu	36	3	17254707	17254707	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134380	exon17	c.C1540T	p.Q514X	.	.	.
FNDC3B	64778	hgsc.bcm.edu	36	3	173541597	173541597	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135095	exon17	c.C1853T	p.A618V	.	.	.
PEX5L	51555	hgsc.bcm.edu	36	3	181008244	181008244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016559	exon14	c.G1588A	p.A530T	.	.	.
MCCC1	56922	hgsc.bcm.edu	36	3	184242090	184242090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020166	exon11	c.G1226A	p.R409Q	.	.	.
MAP3K13	9175	hgsc.bcm.edu	36	3	186682863	186682863	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004721	exon14	c.C2826T	p.D942D	.	.	.
RTP4	64108	hgsc.bcm.edu	36	3	188571689	188571689	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022147	exon2	c.C575T	p.A192V	.	.	.
LEPREL1	55214	hgsc.bcm.edu	36	3	191164526	191164526	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134418	exon14	c.A1406G	p.N469S	.	.	.
LEPREL1	55214	hgsc.bcm.edu	36	3	191320775	191320775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018192	exon1	c.G440A	p.R147H	.	.	.
TCTEX1D2	255758	hgsc.bcm.edu	36	3	197507285	197507285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152773	exon4	c.G370A	p.V124I	.	.	.
DLG1	1739	hgsc.bcm.edu	36	3	198507659	198507659	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004087	exon3	c.C106T	p.R36W	.	.	.
BDH1	622	hgsc.bcm.edu	36	3	198723273	198723273	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203315	exon7	c.G922A	p.A308T	.	.	.
OXSM	54995	hgsc.bcm.edu	36	3	25808149	25808149	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017897	exon2	c.G634A	p.G212R	.	.	.
TMPPE	643853	hgsc.bcm.edu	36	3	33109996	33109996	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136238	exon2	c.G285T	p.M95I	.	.	.
UBP1	7342	hgsc.bcm.edu	36	3	33442169	33442169	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128161	exon3	c.A182G	p.H61R	.	.	.
PLCD1	5333	hgsc.bcm.edu	36	3	38026168	38026168	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006225	exon9	c.C1426T	p.R476C	.	.	.
SCN10A	6336	hgsc.bcm.edu	36	3	38728802	38728802	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006514	exon22	c.G3943A	p.D1315N	.	.	.
SCN10A	6336	hgsc.bcm.edu	36	3	38787787	38787787	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006514	exon4	c.G586A	p.V196I	.	.	.
ZNF621	285268	hgsc.bcm.edu	36	3	40548871	40548871	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098414	exon5	c.T606C	p.I202I	.	.	.
NKTR	4820	hgsc.bcm.edu	36	3	42660399	42660399	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005385	exon16	c.T4201C	p.S1401P	.	.	.
LARS2	23395	hgsc.bcm.edu	36	3	45563990	45563990	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015340	exon22	c.G2676T	p.P892P	.	.	.
SLC6A20	54716	hgsc.bcm.edu	36	3	45787880	45787880	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022405	exon5	c.C657T	p.F219F	.	.	.
SETD2	29072	hgsc.bcm.edu	36	3	47138602	47138602	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014159	exon3	c.A2528T	p.D843V	.	.	.
DHX30	22907	hgsc.bcm.edu	36	3	47843908	47843908	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138615	exon5	c.C192T	p.A64A	.	.	.
QARS	5859	hgsc.bcm.edu	36	3	49112414	49112414	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005051	exon14	c.C1279A	p.R427S	.	.	.
UBA7	7318	hgsc.bcm.edu	36	3	49823743	49823743	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003335	exon9	c.G1089A	p.M363I	.	.	.
GNAI2	2771	hgsc.bcm.edu	36	3	50268664	50268664	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002070	exon5	c.C501T	p.D167D	.	.	.
GRM2	2912	hgsc.bcm.edu	36	3	51727109	51727109	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130063	exon4	c.T706C	p.F236L	.	.	.
ITIH1	3697	hgsc.bcm.edu	36	3	52792161	52792161	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166434	exon7	c.G653A	p.R218Q	.	.	.
PSMD6	9861	hgsc.bcm.edu	36	3	63980146	63980146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014814	exon3	c.G363A	p.L121L	.	.	.
PRICKLE2	166336	hgsc.bcm.edu	36	3	64159531	64159531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198859	exon2	c.C113T	p.A38V	.	.	.
EPHA3	2042	hgsc.bcm.edu	36	3	89341782	89341782	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005233	exon3	c.A236C	p.N79T	.	.	.
THUMPD3	25917	hgsc.bcm.edu	36	3	9397245	9397245	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015453	exon7	c.T1067G	p.V356G	.	.	.
TMEM111	55831	hgsc.bcm.edu	36	3	9990358	9990358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018447	exon5	c.C448T	p.P150S	.	.	.
CLEC12A	160364	hgsc.bcm.edu	36	12	10024559	10024559	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138337	exon4	c.A491C	p.Q164P	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108181282	108181282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001093	exon46	c.C6482T	p.S2161F	.	.	.
TAS2R19	259294	hgsc.bcm.edu	36	12	11065865	11065865	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176888	exon1	c.C573T	p.S191S	.	.	.
MED13L	23389	hgsc.bcm.edu	36	12	114885614	114885614	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015335	exon30	c.A6481G	p.T2161A	MED13L,lung,NS,Substitution - Missense,0	.	.
HNF1A	6927	hgsc.bcm.edu	36	12	119911153	119911153	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000545	exon2	c.T461C	p.M154T	.	.	.
OASL	8638	hgsc.bcm.edu	36	12	119961058	119961058	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003733	exon1	c.C100A	p.L34I	.	.	.
RHOF	54509	hgsc.bcm.edu	36	12	120703464	120703464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019034	exon3	c.C244T	p.R82W	.	.	.
RSRC2	65117	hgsc.bcm.edu	36	12	121565676	121565676	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023012	exon6	c.C654T	p.S218S	.	.	.
EP400	57634	hgsc.bcm.edu	36	12	131063995	131063995	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015409	exon18	c.C3616T	p.R1206C	.	.	.
PDE3A	5139	hgsc.bcm.edu	36	12	20657831	20657831	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000921	exon3	c.C1199T	p.S400L	.	.	.
SLCO1C1	53919	hgsc.bcm.edu	36	12	20755640	20755640	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017435	exon5	c.C458T	p.P153L	.	.	.
COL2A1	1280	hgsc.bcm.edu	36	12	46678230	46678230	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033150	exon3	c.G124T	p.D42Y	.	.	.
KCNH3	23416	hgsc.bcm.edu	36	12	48223418	48223418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012284	exon5	c.G673A	p.A225T	.	.	.
KCNA1	3736	hgsc.bcm.edu	36	12	4891016	4891016	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000217	exon2	c.C211T	p.R71C	.	.	.
KRT75	9119	hgsc.bcm.edu	36	12	51104618	51104618	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004693	exon9	c.G1606A	p.V536I	.	.	.
ITGA5	3678	hgsc.bcm.edu	36	12	53083059	53083059	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002205	exon19	c.C1957T	p.P653S	.	.	.
MMP19	4327	hgsc.bcm.edu	36	12	54518696	54518696	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002429	exon6	c.C856A	p.P286T	.	.	.
FAM62A	23344	hgsc.bcm.edu	36	12	54814431	54814431	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015292	exon15	c.G1584A	p.A528A	.	.	.
KIF5A	3798	hgsc.bcm.edu	36	12	56247245	56247245	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004984	exon7	c.C571T	p.R191C	.	.	.
LRIG3	121227	hgsc.bcm.edu	36	12	57562979	57562979	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153377	exon12	c.C1419A	p.A473A	.	.	.
USP15	9958	hgsc.bcm.edu	36	12	61073193	61073193	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006313	exon18	c.T2427G	p.F809L	.	.	.
TMTC2	160335	hgsc.bcm.edu	36	12	81848400	81848400	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152588	exon4	c.G1543A	p.A515T	.	.	.
C15orf2	23742	hgsc.bcm.edu	36	15	22474128	22474128	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018958	exon1	c.C2021A	p.P674H	.	.	.
HERC2	8924	hgsc.bcm.edu	36	15	26093269	26093269	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004667	exon65	c.C9924A	p.G3308G	.	.	.
CGNL1	84952	hgsc.bcm.edu	36	15	55531773	55531773	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032866	exon6	c.T2048G	p.L683R	.	.	.
TLN2	83660	hgsc.bcm.edu	36	15	60754791	60754791	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015059	exon8	c.C936T	p.G312G	.	.	.
IGDCC4	57722	hgsc.bcm.edu	36	15	63469701	63469701	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020962	exon13	c.G2253A	p.L751L	.	.	.
MEGF11	84465	hgsc.bcm.edu	36	15	64010227	64010227	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032445	exon11	c.A1396G	p.T466A	.	.	.
MYO9A	4649	hgsc.bcm.edu	36	15	69979199	69979199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006901	exon24	c.C3353T	p.A1118V	.	.	.
MYO9A	4649	hgsc.bcm.edu	36	15	70087282	70087282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006901	exon8	c.G1319A	p.R440Q	.	.	.
NPTN	27020	hgsc.bcm.edu	36	15	71676425	71676425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161363	exon2	c.G430A	p.V144I	.	.	.
CYP1A1	1543	hgsc.bcm.edu	36	15	72799978	72799978	+	Missense_Mutation	SNP	C	C	T	rs28399429	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000499	exon7	c.G1444A	p.V482M	.	.	.
MORF4L1	10933	hgsc.bcm.edu	36	15	76952447	76952447	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006791	exon1	c.C33T	p.F11F	.	.	.
KIAA1024	23251	hgsc.bcm.edu	36	15	77536021	77536021	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015206	exon2	c.G477T	p.R159R	.	.	.
KIAA1024	23251	hgsc.bcm.edu	36	15	77536972	77536972	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015206	exon2	c.C1428A	p.T476T	.	.	.
ARNT2	9915	hgsc.bcm.edu	36	15	78659860	78659860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014862	exon16	c.C1667T	p.T556M	.	.	.
TTC23	64927	hgsc.bcm.edu	36	15	97579565	97579565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040659	exon3	c.C208T	p.R70C	.	.	.
BANK1	55024	hgsc.bcm.edu	36	4	103200508	103200508	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017935	exon12	c.A2087G	p.E696G	.	.	.
CASP6	839	hgsc.bcm.edu	36	4	110831475	110831475	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001226	exon6	c.T623C	p.M208T	.	.	.
TRAM1L1	133022	hgsc.bcm.edu	36	4	118225074	118225074	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152402	exon1	c.A924G	p.Q308Q	.	.	.
NDST3	9348	hgsc.bcm.edu	36	4	119278711	119278711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004784	exon5	c.G1279A	p.V427I	.	.	.
SYNPO2	171024	hgsc.bcm.edu	36	4	120171142	120171142	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133477	exon4	c.G1764A	p.T588T	.	.	.
SYNPO2	171024	hgsc.bcm.edu	36	4	120171546	120171546	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133477	exon4	c.C2168T	p.T723I	.	.	.
TRPC3	7222	hgsc.bcm.edu	36	4	123048133	123048133	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003305	exon6	c.C1613T	p.S538F	.	.	.
ANKRD50	57182	hgsc.bcm.edu	36	4	125810315	125810315	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167882	exon3	c.T3030A	p.N1010K	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126557180	126557180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024582	exon6	c.G6971A	p.R2324Q	.	.	.
ZNF330	27309	hgsc.bcm.edu	36	4	142363092	142363092	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014487	exon2	c.A117C	p.S39S	.	.	.
ZNF827	152485	hgsc.bcm.edu	36	4	146920009	146920009	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178835	exon9	c.C2488T	p.Q830X	.	.	.
POU4F2	5458	hgsc.bcm.edu	36	4	147781051	147781051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004575	exon2	c.G871A	p.V291M	.	.	.
EDNRA	1909	hgsc.bcm.edu	36	4	148626456	148626456	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166055	exon2	c.T173C	p.V58A	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155375468	155375468	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017639	exon25	c.G8421A	p.L2807L	.	.	.
CTSO	1519	hgsc.bcm.edu	36	4	157068992	157068992	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001334	exon7	c.A877C	p.S293R	.	.	.
FSTL5	56884	hgsc.bcm.edu	36	4	162526435	162526435	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020116	exon16	c.A2458G	p.I820V	.	.	.
KLHL2	11275	hgsc.bcm.edu	36	4	166451324	166451324	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161521	exon10	c.C1221T	p.Y407Y	.	.	.
TLL1	7092	hgsc.bcm.edu	36	4	167200789	167200789	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012464	exon15	c.A2006G	p.E669G	.	.	.
C4orf27	54969	hgsc.bcm.edu	36	4	170889480	170889480	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017867	exon7	c.T859C	p.Y287H	.	.	.
DCTD	1635	hgsc.bcm.edu	36	4	184051249	184051249	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001921	exon5	c.T387C	p.S129S	.	.	.
PDLIM3	27295	hgsc.bcm.edu	36	4	186660599	186660599	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114107	exon7	c.G794A	p.R265Q	.	.	.
TLR3	7098	hgsc.bcm.edu	36	4	187237101	187237101	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003265	exon3	c.G555A	p.A185A	.	.	.
SLC34A2	10568	hgsc.bcm.edu	36	4	25281496	25281496	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177999	exon8	c.T867C	p.D289D	.	.	.
RFC1	5981	hgsc.bcm.edu	36	4	39001376	39001376	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002913	exon7	c.T699C	p.D233D	.	.	.
N4BP2	55728	hgsc.bcm.edu	36	4	39799751	39799751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018177	exon9	c.G3625A	p.V1209I	.	.	.
ATP8A1	10396	hgsc.bcm.edu	36	4	42272411	42272411	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006095	exon13	c.T1191C	p.N397N	.	.	.
KCTD8	386617	hgsc.bcm.edu	36	4	43871822	43871822	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198353	exon2	c.A1164G	p.T388T	.	.	.
LNX1	84708	hgsc.bcm.edu	36	4	54042745	54042745	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126328	exon7	c.C1384T	p.R462C	.	.	.
STK32B	55351	hgsc.bcm.edu	36	4	5509496	5509496	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018401	exon8	c.A728C	p.E243A	.	.	.
EPHA5	2044	hgsc.bcm.edu	36	4	65915674	65915674	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004439	exon10	c.G1920C	p.G640G	.	.	.
EPHA5	2044	hgsc.bcm.edu	36	4	66043714	66043714	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004439	exon4	c.A1053G	p.T351T	.	.	.
UGT2B4	7363	hgsc.bcm.edu	36	4	70396080	70396080	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021139	exon1	c.C89A	p.P30H	.	.	.
NUP54	53371	hgsc.bcm.edu	36	4	77284339	77284339	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017426	exon3	c.G282A	p.Q94Q	.	.	.
SCD5	79966	hgsc.bcm.edu	36	4	83801248	83801248	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024906	exon4	c.G576T	p.Q192H	.	.	.
WDFY3	23001	hgsc.bcm.edu	36	4	85845628	85845628	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014991	exon54	c.A8278C	p.T2760P	.	.	.
TMEM175	84286	hgsc.bcm.edu	36	4	937047	937047	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032326	exon8	c.A532G	p.R178G	.	.	.
SLC2A9	56606	hgsc.bcm.edu	36	4	9445691	9445691	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001290	exon12	c.A1244G	p.Q415R	.	.	.
TSPAN5	10098	hgsc.bcm.edu	36	4	99622248	99622248	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005723	exon4	c.A381G	p.I127M	.	.	.
SERPINA7	6906	hgsc.bcm.edu	36	X	105164280	105164280	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000354	exon5	c.T1115G	p.L372R	.	.	.
IL13RA2	3598	hgsc.bcm.edu	36	X	114150368	114150368	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000640	exon7	c.A824G	p.E275G	.	.	.
RP13-102H20.1	158763	hgsc.bcm.edu	36	X	130048036	130048036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144967	exon10	c.C1334T	p.P445L	.	.	.
GPC3	2719	hgsc.bcm.edu	36	X	132914881	132914881	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164618	exon2	c.C199A	p.P67T	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147842927	147842927	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002025	exon10	c.T1515C	p.T505T	.	.	.
PCYT1B	9468	hgsc.bcm.edu	36	X	24490437	24490437	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001163264	exon8	c.C950T	p.S317L	.	.	.
ARSH	347527	hgsc.bcm.edu	36	X	2938156	2938156	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011719	exon2	c.G178A	p.A60T	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	32376674	32376674	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004006	exon27	c.A3606C	p.R1202S	.	.	.
MXRA5	25878	hgsc.bcm.edu	36	X	3238941	3238941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015419	exon7	c.G7303A	p.V2435I	.	.	.
PCTK1	5127	hgsc.bcm.edu	36	X	46970155	46970155	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006201	exon7	c.G675A	p.T225T	.	.	.
ITIH5L	347365	hgsc.bcm.edu	36	X	54793133	54793133	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198510	exon13	c.C3862G	p.R1288G	.	.	.
PJA1	64219	hgsc.bcm.edu	36	X	68298779	68298779	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001032396	exon2	c.G863A	p.R288H	.	.	.
CXorf65	158830	hgsc.bcm.edu	36	X	70242617	70242617	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025265	exon3	c.C208T	p.R70X	.	.	.
KLHL4	56062	hgsc.bcm.edu	36	X	86659722	86659722	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057162	exon1	c.G170A	p.R57Q	.	.	.
USP26	83844	hgsc.bcm.edu	36	X	131988079	131988080	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031907	exon1	c.1835_1836del	p.612_612del	.	.	.
ST6GAL2	84620	hgsc.bcm.edu	36	2	106816989	106816989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142351	exon3	c.G989A	p.G330D	.	.	.
ATP6V1C2	245973	hgsc.bcm.edu	36	2	10821977	10821977	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039362	exon5	c.T353C	p.V118A	.	.	.
TMEM177	80775	hgsc.bcm.edu	36	2	120155271	120155271	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105199	exon2	c.A372G	p.I124M	.	.	.
CCNT2	905	hgsc.bcm.edu	36	2	135392906	135392906	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058241	exon1	c.C12T	p.G4G	.	.	.
YSK4	80122	hgsc.bcm.edu	36	2	135460019	135460019	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025052	exon7	c.T2893C	p.L965L	.	.	.
DARS	1615	hgsc.bcm.edu	36	2	136390281	136390281	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001349	exon11	c.A1091C	p.D364A	.	.	.
PKP4	8502	hgsc.bcm.edu	36	2	159234668	159234668	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003628	exon17	c.C2919T	p.G973G	.	.	.
PLA2R1	22925	hgsc.bcm.edu	36	2	160609753	160609753	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007366	exon2	c.G271T	p.G91C	.	.	.
PPIG	9360	hgsc.bcm.edu	36	2	170201810	170201810	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004792	exon14	c.G1796T	p.R599M	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179321023	179321023	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133379	exon46	c.A14349C	p.E4783D	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179375219	179375219	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133379	exon3	c.C186T	p.R62R	.	.	.
NEUROD1	4760	hgsc.bcm.edu	36	2	182251476	182251476	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002500	exon2	c.G357A	p.A119A	.	.	.
NT5C1B	93034	hgsc.bcm.edu	36	2	18629500	18629500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033253	exon4	c.C484T	p.R162W	.	.	.
WDR75	84128	hgsc.bcm.edu	36	2	190023881	190023881	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032168	exon3	c.C224G	p.S75C	.	.	.
SDPR	8436	hgsc.bcm.edu	36	2	192419567	192419567	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004657	exon1	c.G330A	p.T110T	.	.	.
BMPR2	659	hgsc.bcm.edu	36	2	203105596	203105596	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001204	exon9	c.C1172A	p.A391D	.	.	.
MDH1B	130752	hgsc.bcm.edu	36	2	207329926	207329926	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039845	exon4	c.A354C	p.K118N	.	.	.
MYL1	4632	hgsc.bcm.edu	36	2	210871429	210871429	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_079422	exon3	c.T132C	p.N44N	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215548929	215548929	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173076	exon34	c.A5206C	p.R1736R	.	.	.
IGFBP5	3488	hgsc.bcm.edu	36	2	217251129	217251129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Visver			SOLID	NM_000599	exon3	c.C638T	p.A213V	.	.	.
TMBIM1	64114	hgsc.bcm.edu	36	2	218852021	218852021	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022152	exon5	c.G406A	p.V136I	.	.	.
STK36	27148	hgsc.bcm.edu	36	2	219270501	219270501	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015690	exon24	c.T2833A	p.S945T	.	.	.
NHEJ1	79840	hgsc.bcm.edu	36	2	219651072	219651072	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024782	exon6	c.A689C	p.Q230P	.	.	.
SERPINE2	5270	hgsc.bcm.edu	36	2	224555721	224555721	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136530	exon6	c.A942G	p.T314T	.	.	.
SERPINE2	5270	hgsc.bcm.edu	36	2	224564821	224564821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136530	exon4	c.G664A	p.A222T	.	.	.
IRS1	3667	hgsc.bcm.edu	36	2	227369589	227369589	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005544	exon1	c.G2110A	p.G704R	.	.	.
CHRNG	1146	hgsc.bcm.edu	36	2	233112721	233112721	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005199	exon1	c.C20T	p.P7L	.	.	.
AGAP1	116987	hgsc.bcm.edu	36	2	236504234	236504234	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037131	exon12	c.C1411T	p.R471C	.	.	.
CXCR7	57007	hgsc.bcm.edu	36	2	237154570	237154570	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020311	exon2	c.G723A	p.A241A	.	.	.
NDUFA10	4705	hgsc.bcm.edu	36	2	240609390	240609390	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004544	exon3	c.T357C	p.D119D	.	.	.
ANO7	50636	hgsc.bcm.edu	36	2	241797468	241797468	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001891	exon12	c.C1335T	p.S445S	.	.	.
NCOA1	8648	hgsc.bcm.edu	36	2	24783527	24783527	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003743	exon11	c.A1684G	p.R562G	.	.	.
ADCY3	109	hgsc.bcm.edu	36	2	24913320	24913320	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004036	exon8	c.G1632A	p.T544T	.	.	.
DPYSL5	56896	hgsc.bcm.edu	36	2	27021054	27021054	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020134	exon12	c.C1467T	p.R489R	.	.	.
TRIM54	57159	hgsc.bcm.edu	36	2	27375051	27375051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032546	exon2	c.G281A	p.G94D	.	.	.
GTF3C2	2976	hgsc.bcm.edu	36	2	27413706	27413706	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001035521	exon7	c.G1036A	p.A346T	.	.	.
IFT172	26160	hgsc.bcm.edu	36	2	27529855	27529855	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015662	exon35	c.G3851A	p.R1284Q	.	.	.
GALNT14	79623	hgsc.bcm.edu	36	2	31008495	31008495	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024572	exon10	c.T1001G	p.V334G	.	.	.
XDH	7498	hgsc.bcm.edu	36	2	31462843	31462843	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000379	exon9	c.T734C	p.L245P	.	.	.
COLEC11	78989	hgsc.bcm.edu	36	2	3638810	3638810	+	Missense_Mutation	SNP	C	C	T	rs62107197	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199235	exon3	c.C77T	p.P26L	.	.	.
FAM82A1	151393	hgsc.bcm.edu	36	2	38032777	38032777	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144713	exon2	c.T915C	p.F305F	.	.	.
SLC8A1	6546	hgsc.bcm.edu	36	2	40510758	40510758	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001112800	exon1	c.A167C	p.K56T	.	.	.
ABCG8	64241	hgsc.bcm.edu	36	2	43955805	43955805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022437	exon11	c.C1505T	p.P502L	.	.	.
LRPPRC	10128	hgsc.bcm.edu	36	2	44015419	44015419	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133259	exon24	c.C2607T	p.G869G	.	.	.
MSH6	2956	hgsc.bcm.edu	36	2	47880084	47880084	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000179	exon4	c.T1458G	p.T486T	.	.	.
REL	5966	hgsc.bcm.edu	36	2	61000744	61000744	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002908	exon8	c.T918C	p.D306D	.	.	.
WDR92	116143	hgsc.bcm.edu	36	2	68212026	68212026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138458	exon8	c.G922A	p.A308T	.	.	.
APLF	200558	hgsc.bcm.edu	36	2	68618739	68618739	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173545	exon7	c.G1036C	p.E346Q	.	.	.
PROKR1	10887	hgsc.bcm.edu	36	2	68735623	68735623	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138964	exon2	c.C593T	p.A198V	.	.	.
ZNF638	27332	hgsc.bcm.edu	36	2	71507795	71507795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014497	exon24	c.C5288T	p.A1763V	.	.	.
ZNF638	27332	hgsc.bcm.edu	36	2	71509252	71509252	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014497	exon25	c.A5613G	p.E1871E	.	.	.
C2orf65	130951	hgsc.bcm.edu	36	2	74642950	74642950	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138804	exon8	c.C1183T	p.L395L	.	.	.
SEMA4F	10505	hgsc.bcm.edu	36	2	74755298	74755298	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004263	exon8	c.T988G	p.F330V	.	.	.
NCAPH	23397	hgsc.bcm.edu	36	2	96396812	96396812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015341	exon15	c.C1972T	p.L658F	.	.	.
CNGA3	1261	hgsc.bcm.edu	36	2	98379927	98379927	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001298	exon8	c.C1862T	p.A621V	.	.	.
C2orf67	151050	hgsc.bcm.edu	36	2	210702026	210702029	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	TGTC	TGTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152519	exon3	c.1201_1204del	p.401_402del	.	.	.
C9orf125	84302	hgsc.bcm.edu	36	9	103278124	103278124	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032342	exon2	c.A1072G	p.K358E	.	.	.
ABCA1	19	hgsc.bcm.edu	36	9	106618379	106618379	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005502	exon25	c.C3604T	p.H1202Y	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116843093	116843093	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002160	exon19	c.C5340T	p.I1780I	.	.	.
PAPPA	5069	hgsc.bcm.edu	36	9	118137056	118137056	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002581	exon13	c.A3493G	p.S1165G	.	.	.
DBC1	1620	hgsc.bcm.edu	36	9	121010928	121010928	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014618	exon7	c.G1035A	p.L345L	.	.	.
DAB2IP	153090	hgsc.bcm.edu	36	9	123570647	123570647	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032552	exon10	c.G1729A	p.A577T	.	.	.
SPTAN1	6709	hgsc.bcm.edu	36	9	130390988	130390988	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195532	exon21	c.G2951A	p.R984Q	.	.	.
NUP214	8021	hgsc.bcm.edu	36	9	133063655	133063655	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005085	exon29	c.C4953T	p.A1651A	.	.	.
TSC1	7248	hgsc.bcm.edu	36	9	134790927	134790927	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001162426	exon5	c.C231T	p.N77N	.	.	.
DBH	1621	hgsc.bcm.edu	36	9	135497331	135497331	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000787	exon3	c.T668C	p.I223T	.	.	.
COL5A1	1289	hgsc.bcm.edu	36	9	136763789	136763789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000093	exon9	c.G1384A	p.E462K	.	.	.
NFX1	4799	hgsc.bcm.edu	36	9	33309053	33309053	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147134	exon9	c.C1834T	p.R612W	.	.	.
UBAP2	55833	hgsc.bcm.edu	36	9	33913265	33913265	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018449	exon26	c.G2923A	p.A975T	.	.	.
FRMPD1	22844	hgsc.bcm.edu	36	9	37719787	37719787	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014907	exon8	c.C675A	p.A225A	.	.	.
TJP2	9414	hgsc.bcm.edu	36	9	71052871	71052871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201629	exon19	c.G2791A	p.A931T	.	.	.
TRPM3	80036	hgsc.bcm.edu	36	9	72424856	72424856	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007471	exon15	c.C2049T	p.N683N	.	.	.
TRPM6	140803	hgsc.bcm.edu	36	9	76587525	76587525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177310	exon22	c.G2969A	p.R990H	.	.	.
DMRT1	1761	hgsc.bcm.edu	36	9	836983	836983	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021951	exon2	c.C378A	p.A126A	.	.	.
SLC28A3	64078	hgsc.bcm.edu	36	9	86092890	86092890	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022127	exon13	c.A1173G	p.T391T	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100574979	100574979	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052867	exon18	c.G2173A	p.A725T	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100688261	100688261	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052867	exon12	c.T1280C	p.V427A	.	.	.
MYO16	23026	hgsc.bcm.edu	36	13	108348476	108348476	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198950	exon15	c.A1771G	p.T591A	.	.	.
ARHGEF7	8874	hgsc.bcm.edu	36	13	110742622	110742622	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001113512	exon18	c.A2204G	p.Y735C	.	.	.
ATP11A	23250	hgsc.bcm.edu	36	13	112487566	112487566	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015205	exon2	c.G156A	p.S52S	.	.	.
SACS	26278	hgsc.bcm.edu	36	13	22813582	22813582	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014363	exon10	c.T2433C	p.G811G	.	.	.
SPATA13	221178	hgsc.bcm.edu	36	13	23721940	23721940	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166271	exon3	c.G1979T	p.G660V	.	.	.
PARP4	143	hgsc.bcm.edu	36	13	23942059	23942059	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006437	exon16	c.C2019T	p.F673F	.	.	.
RXFP2	122042	hgsc.bcm.edu	36	13	31269491	31269491	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166058	exon16	c.A1868C	p.D623A	.	.	.
AKAP11	11215	hgsc.bcm.edu	36	13	41775914	41775914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016248	exon8	c.G5032A	p.G1678R	.	.	.
KIAA1704	55425	hgsc.bcm.edu	36	13	44487160	44487160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018559	exon5	c.C482T	p.T161M	.	.	.
COG3	83548	hgsc.bcm.edu	36	13	44968353	44968353	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031431	exon13	c.G1393A	p.V465I	.	.	.
LCP1	3936	hgsc.bcm.edu	36	13	45625012	45625012	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002298	exon7	c.G643T	p.D215Y	.	.	.
FNDC3A	22862	hgsc.bcm.edu	36	13	48670120	48670120	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079673	exon22	c.C2492A	p.A831D	.	.	.
CDADC1	81602	hgsc.bcm.edu	36	13	48752765	48752765	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030911	exon8	c.A1340G	p.D447G	.	.	.
PCDH17	27253	hgsc.bcm.edu	36	13	57197163	57197163	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040429	exon4	c.T3214C	p.L1072L	.	.	.
MYCBP2	23077	hgsc.bcm.edu	36	13	76524012	76524012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015057	exon81	c.C13690T	p.R4564W	.	.	.
SLITRK5	26050	hgsc.bcm.edu	36	13	87126252	87126252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015567	exon2	c.C608T	p.T203M	.	.	.
CLDN10	9071	hgsc.bcm.edu	36	13	95010394	95010394	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006984	exon2	c.A228G	p.I76M	.	.	.
CPN1	1369	hgsc.bcm.edu	36	10	101798620	101798620	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001308	exon8	c.A1115C	p.D372A	.	.	.
SEMA4G	57715	hgsc.bcm.edu	36	10	102733201	102733201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017893	exon14	c.G1855A	p.V619M	.	.	.
GBF1	8729	hgsc.bcm.edu	36	10	104008758	104008758	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199378	exon2	c.C73T	p.R25X	.	.	.
PSD	5662	hgsc.bcm.edu	36	10	104154347	104154347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002779	exon15	c.G2683A	p.A895T	.	.	.
TAF5	6877	hgsc.bcm.edu	36	10	105137050	105137050	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006951	exon9	c.T1958G	p.L653R	.	.	.
IDI1	3422	hgsc.bcm.edu	36	10	1078638	1078638	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004508	exon4	c.C471T	p.D157D	.	.	.
KIAA1598	57698	hgsc.bcm.edu	36	10	118677328	118677328	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018330	exon11	c.A1077T	p.P359P	.	.	.
PDZD8	118987	hgsc.bcm.edu	36	10	119068408	119068408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173791	exon3	c.G1063A	p.V355I	.	.	.
EIF3A	8661	hgsc.bcm.edu	36	10	120785708	120785708	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003750	exon22	c.C3982A	p.R1328S	.	.	.
SEC23IP	11196	hgsc.bcm.edu	36	10	121653690	121653690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007190	exon4	c.G1012A	p.A338T	.	.	.
UROS	7390	hgsc.bcm.edu	36	10	127474722	127474722	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000375	exon8	c.G501A	p.V167V	.	.	.
BCCIP	56647	hgsc.bcm.edu	36	10	127506153	127506153	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016567	exon3	c.A277T	p.T93S	.	.	.
MKI67	4288	hgsc.bcm.edu	36	10	129803259	129803259	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002417	exon7	c.G1403A	p.G468D	.	.	.
PHYH	5264	hgsc.bcm.edu	36	10	13376488	13376488	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037537	exon3	c.G60A	p.K20K	.	.	.
TUBGCP2	10844	hgsc.bcm.edu	36	10	134962967	134962967	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006659	exon4	c.T410C	p.L137P	.	.	.
MTG1	92170	hgsc.bcm.edu	36	10	135083530	135083530	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138384	exon11	c.C876T	p.N292N	.	.	.
ST8SIA6	338596	hgsc.bcm.edu	36	10	17403022	17403022	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004470	exon8	c.T1058C	p.I353T	.	.	.
ACBD5	91452	hgsc.bcm.edu	36	10	27537281	27537281	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145698	exon10	c.G1304A	p.S435N	.	.	.
CCDC7	221016	hgsc.bcm.edu	36	10	32846907	32846907	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145023	exon11	c.G901A	p.A301T	.	.	.
ZNF32	7580	hgsc.bcm.edu	36	10	43460128	43460128	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006973	exon3	c.G198T	p.Q66H	.	.	.
FRMPD2	143162	hgsc.bcm.edu	36	10	49070812	49070812	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018071	exon16	c.G2086T	p.G696X	.	.	.
CSTF2T	23283	hgsc.bcm.edu	36	10	53127659	53127659	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015235	exon1	c.A1657G	p.K553E	.	.	.
PRKCQ	5588	hgsc.bcm.edu	36	10	6567147	6567147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006257	exon10	c.C991T	p.P331S	.	.	.
LRRTM3	347731	hgsc.bcm.edu	36	10	68357234	68357234	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178011	exon2	c.T554C	p.L185P	.	.	.
HK1	3098	hgsc.bcm.edu	36	10	70773660	70773660	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033498	exon5	c.G147T	p.K49N	.	.	.
MYST4	23522	hgsc.bcm.edu	36	10	76458812	76458812	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012330	exon18	c.C4224T	p.H1408H	.	.	.
KCNMA1	3778	hgsc.bcm.edu	36	10	78502872	78502872	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161353	exon14	c.T1738C	p.S580P	.	.	.
KIAA1128	54462	hgsc.bcm.edu	36	10	86175519	86175519	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018999	exon5	c.G1758A	p.Q586Q	.	.	.
HECTD2	143279	hgsc.bcm.edu	36	10	93262083	93262083	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182765	exon21	c.A2293G	p.I765V	.	.	.
ALDH18A1	5832	hgsc.bcm.edu	36	10	97366269	97366269	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017423	exon13	c.C1554A	p.T518T	.	.	.
TLL2	7093	hgsc.bcm.edu	36	10	98135862	98135862	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012465	exon15	c.G1953A	p.V651V	.	.	.
ARHGAP19	84986	hgsc.bcm.edu	36	10	98993814	98993814	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032900	exon8	c.G1086A	p.Q362Q	.	.	.
PAM	5066	hgsc.bcm.edu	36	5	102392571	102392571	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138822	exon23	c.G2567T	p.S856I	.	.	.
HISPPD1	23262	hgsc.bcm.edu	36	5	102536813	102536813	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015216	exon19	c.C2342A	p.P781H	.	.	.
LVRN	206338	hgsc.bcm.edu	36	5	115378887	115378887	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173800	exon17	c.C2490T	p.G830G	.	.	.
DMXL1	1657	hgsc.bcm.edu	36	5	118497218	118497218	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005509	exon12	c.C1700A	p.S567Y	.	.	.
DMXL1	1657	hgsc.bcm.edu	36	5	118513714	118513714	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005509	exon18	c.G4293A	p.T1431T	.	.	.
MEGF10	84466	hgsc.bcm.edu	36	5	126804429	126804429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032446	exon19	c.C2333T	p.T778I	.	.	.
KIF3A	11127	hgsc.bcm.edu	36	5	132066498	132066498	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007054	exon11	c.G1544A	p.R515H	.	.	.
PHF15	23338	hgsc.bcm.edu	36	5	133915765	133915765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015288	exon4	c.C278T	p.A93V	.	.	.
CTNNA1	1495	hgsc.bcm.edu	36	5	138297404	138297404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001903	exon18	c.G2448A	p.M816I	.	.	.
PCDHAC2	56134	hgsc.bcm.edu	36	5	140327952	140327952	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018899	exon1	c.T1417G	p.S473A	.	.	.
PCDHB6	56130	hgsc.bcm.edu	36	5	140510202	140510202	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018939	exon1	c.G180A	p.S60S	.	.	.
PCDH1	5097	hgsc.bcm.edu	36	5	141224511	141224511	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032420	exon3	c.A1569C	p.E523D	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150885652	150885652	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon17	c.G10376C	p.G3459A	.	.	.
SPARC	6678	hgsc.bcm.edu	36	5	151023864	151023864	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003118	exon9	c.C860T	p.A287V	.	.	.
GRIA1	2890	hgsc.bcm.edu	36	5	153034284	153034284	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114183	exon6	c.A731G	p.K244R	.	.	.
LARP1	23367	hgsc.bcm.edu	36	5	154168248	154168248	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015315	exon16	c.T2504C	p.M835T	.	.	.
SLU7	10569	hgsc.bcm.edu	36	5	159774852	159774852	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006425	exon2	c.A28G	p.N10D	.	.	.
FBXW11	23291	hgsc.bcm.edu	36	5	171237657	171237657	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033645	exon6	c.C769T	p.R257C	.	.	.
SH3PXD2B	285590	hgsc.bcm.edu	36	5	171705852	171705852	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017995	exon12	c.C1081T	p.P361S	.	.	.
C5orf41	153222	hgsc.bcm.edu	36	5	172446152	172446152	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168393	exon3	c.C52T	p.R18X	.	.	.
CDH9	1007	hgsc.bcm.edu	36	5	26941941	26941941	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016279	exon5	c.A695G	p.Y232C	.	.	.
C6	729	hgsc.bcm.edu	36	5	41217251	41217251	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000065	exon7	c.C894A	p.A298A	.	.	.
GHR	2690	hgsc.bcm.edu	36	5	42724782	42724782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000163	exon4	c.G170A	p.R57H	.	.	.
FST	10468	hgsc.bcm.edu	36	5	52814587	52814587	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013409	exon2	c.A206G	p.D69G	.	.	.
ACTBL2	345651	hgsc.bcm.edu	36	5	56814113	56814113	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017992	exon1	c.A179G	p.Q60R	.	.	.
RAB3C	115827	hgsc.bcm.edu	36	5	57949253	57949253	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138453	exon2	c.C51T	p.Y17Y	.	.	.
SLC30A5	64924	hgsc.bcm.edu	36	5	68447552	68447552	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022902	exon9	c.C827T	p.T276M	.	.	.
MARVELD2	153562	hgsc.bcm.edu	36	5	68751716	68751716	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001038603	exon2	c.G748T	p.G250C	.	.	.
IQGAP2	10788	hgsc.bcm.edu	36	5	76029592	76029592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006633	exon33	c.C4231T	p.R1411C	.	.	.
PAPD4	167153	hgsc.bcm.edu	36	5	79000546	79000546	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114394	exon12	c.A1147G	p.N383D	.	.	.
ZFYVE16	9765	hgsc.bcm.edu	36	5	79779853	79779853	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105251	exon8	c.G2977A	p.A993T	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82872493	82872493	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164097	exon7	c.T4954C	p.S1652P	.	.	.
ERAP1	51752	hgsc.bcm.edu	36	5	96143194	96143194	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040458	exon16	c.A2406T	p.E802D	.	.	.
